Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGATGGGGATTGATCTAAACGTTACTCCCCAAACTGAGGATGAGGGTTTGAATCTTGAACTCTCTCTCGCTCCTCCCTCGTCGTCATCGTCCCCACCGCACCATAAACCGAAACGATCCAAATCGGTTAAGTTTCCATCGATATGCCACCAAGAACCCCCCAATATCCACGAGCTAGCGCCGTTGCAACTAAGTTTATTCCTAGACCCATCGCAACCGGGGCCATTGCTCGCACCATCTCAACTGAATTCATCCCAATGGGGGCCATTATTGCAACCTTGGCCATCCCAACAGGGGTTGTCGCAATTACCGGGGCCATCCCAACCGAGTTCATTCCAACCGGATCAGCCATTGCAACCTCGGCCATCCCAAGAGGGGTCATCGCAATTACTGGTGCCAACGCCACCATTAAATCAGAGGCAACATAAGAGAATAGCGAACGACATATCGACGACAAATCACCAGGAACCAGCAACAACAAAAGAGAGACGACAAAGAACAAAAGCAGACGAGAGGGAGATCGATCCACCGTATCCGTGGTCGACGAACCGTCGAGCCAAGATCCAGACAATGGAGTACCTACGGTCGAACAACATAGCAACGATCACAGGGGAGGTAGAGTGCAGCCAATGCAAGGAAAAGTACGAGATGGAGTACGACCTGGTGTCGAAGTTCGAGGAGGTAGCAAGGTTCGTAGCAAGAAATGGGGAAGACTGCAACGACAGAGCTCCGAGTTCGTGGGCGACGCCAGTTGCACTGAATTGCAGGATGTGCAACCAACAAAAGTGTGTAGAAGCAGTGATTCCAAAGAGTGATTTCAAGACCATAAATTGGCTGTTCTTGCTGTTGGGGCAAATGCTTGGAAATTTGCAACTGGATCAGCTTAGATACTTCTGCACTCACACCAACAATCATCGAACCGGTGCAAAAGATCGCCTTCTTTATCAAACTTACATTACTTTGTGTCAACAACTTAATGCCTAG
mRNA sequence
ATGGGGATGGGGATTGATCTAAACGTTACTCCCCAAACTGAGGATGAGGGTTTGAATCTTGAACTCTCTCTCGCTCCTCCCTCGTCGTCATCGTCCCCACCGCACCATAAACCGAAACGATCCAAATCGGTTAAGTTTCCATCGATATGCCACCAAGAACCCCCCAATATCCACGAGCTAGCGCCGTTGCAACTAAGTTTATTCCTAGACCCATCGCAACCGGGGCCATTGCTCGCACCATCTCAACTGAATTCATCCCAATGGGGGCCATTATTGCAACCTTGGCCATCCCAACAGGGGTTGTCGCAATTACCGGGGCCATCCCAACCGAGTTCATTCCAACCGGATCAGCCATTGCAACCTCGGCCATCCCAAGAGGGGTCATCGCAATTACTGGTGCCAACGCCACCATTAAATCAGAGGCAACATAAGAGAATAGCGAACGACATATCGACGACAAATCACCAGGAACCAGCAACAACAAAAGAGAGACGACAAAGAACAAAAGCAGACGAGAGGGAGATCGATCCACCGTATCCGTGGTCGACGAACCGTCGAGCCAAGATCCAGACAATGGAGTACCTACGGTCGAACAACATAGCAACGATCACAGGGGAGGTAGAGTGCAGCCAATGCAAGGAAAAGTACGAGATGGAGTACGACCTGGTGTCGAAGTTCGAGGAGGTAGCAAGGTTCGTAGCAAGAAATGGGGAAGACTGCAACGACAGAGCTCCGAGTTCGTGGGCGACGCCAGTTGCACTGAATTGCAGGATGTGCAACCAACAAAAGTGTGTAGAAGCAGTGATTCCAAAGAGTGATTTCAAGACCATAAATTGGCTGTTCTTGCTGTTGGGGCAAATGCTTGGAAATTTGCAACTGGATCAGCTTAGATACTTCTGCACTCACACCAACAATCATCGAACCGGTGCAAAAGATCGCCTTCTTTATCAAACTTACATTACTTTGTGTCAACAACTTAATGCCTAG
Coding sequence (CDS)
ATGGGGATGGGGATTGATCTAAACGTTACTCCCCAAACTGAGGATGAGGGTTTGAATCTTGAACTCTCTCTCGCTCCTCCCTCGTCGTCATCGTCCCCACCGCACCATAAACCGAAACGATCCAAATCGGTTAAGTTTCCATCGATATGCCACCAAGAACCCCCCAATATCCACGAGCTAGCGCCGTTGCAACTAAGTTTATTCCTAGACCCATCGCAACCGGGGCCATTGCTCGCACCATCTCAACTGAATTCATCCCAATGGGGGCCATTATTGCAACCTTGGCCATCCCAACAGGGGTTGTCGCAATTACCGGGGCCATCCCAACCGAGTTCATTCCAACCGGATCAGCCATTGCAACCTCGGCCATCCCAAGAGGGGTCATCGCAATTACTGGTGCCAACGCCACCATTAAATCAGAGGCAACATAAGAGAATAGCGAACGACATATCGACGACAAATCACCAGGAACCAGCAACAACAAAAGAGAGACGACAAAGAACAAAAGCAGACGAGAGGGAGATCGATCCACCGTATCCGTGGTCGACGAACCGTCGAGCCAAGATCCAGACAATGGAGTACCTACGGTCGAACAACATAGCAACGATCACAGGGGAGGTAGAGTGCAGCCAATGCAAGGAAAAGTACGAGATGGAGTACGACCTGGTGTCGAAGTTCGAGGAGGTAGCAAGGTTCGTAGCAAGAAATGGGGAAGACTGCAACGACAGAGCTCCGAGTTCGTGGGCGACGCCAGTTGCACTGAATTGCAGGATGTGCAACCAACAAAAGTGTGTAGAAGCAGTGATTCCAAAGAGTGATTTCAAGACCATAAATTGGCTGTTCTTGCTGTTGGGGCAAATGCTTGGAAATTTGCAACTGGATCAGCTTAGATACTTCTGCACTCACACCAACAATCATCGAACCGGTGCAAAAGATCGCCTTCTTTATCAAACTTACATTACTTTGTGTCAACAACTTAATGCCTAG
Protein sequence
MGMGIDLNVTPQTEDEGLNLELSLAPPSSSSSPPHHKPKRSKSVKFPSICHQEPPNIHELAPLQLSLFLDPSQPGPLLAPSQLNSSQWGPLLQPWPSQQGLSQLPGPSQPSSFQPDQPLQPRPSQEGSSQLLVPTPPLNQRQHKRIANDISTTNHQEPATTKERRQRTKADEREIDPPYPWSTNRRAKIQTMEYLRSNNIATITGEVECSQCKEKYEMEYDLVSKFEEVARFVARNGEDCNDRAPSSWATPVALNCRMCNQQKCVEAVIPKSDFKTINWLFLLLGQMLGNLQLDQLRYFCTHTNNHRTGAKDRLLYQTYITLCQQLNA
Homology
BLAST of Sed0015323 vs. NCBI nr
Match:
XP_008439384.1 (PREDICTED: protein PAF1 homolog [Cucumis melo])
HSP 1 Score: 223.0 bits (567), Expect = 3.7e-54
Identity = 145/334 (43.41%), Postives = 188/334 (56.29%), Query Frame = 0
Query: 19 NLELSLAPPSSSSSPPHHKPKRSKSVKFPSICHQEPPNIHELAPLQLSLFLDPSQPGPLL 78
NL+LSL PP S PP + + F S PP++ L L LSL L P P
Sbjct: 11 NLQLSLRPPFQSPPPPSPQSLFTLHSSFQS----PPPSLQSLQSL-LSLRLPTQSPTP-- 70
Query: 79 APSQLNSSQWGPLLQPWP----------SQQGLSQLPGPSQPSSFQ---PDQPLQPRPSQ 138
P+Q + SQ LQP P S Q P P P SF P P P++
Sbjct: 71 -PTQSSLSQ-HLSLQPPPSPPHERLLCVSPQPPHPPPPPEHPLSFHLLLESPPPPPSPAE 130
Query: 139 EGSS-QLLVPTPPL------------NQRQHKRIANDISTTNHQEPATTKERRQRTKADE 198
SS L + +PPL Q Q I T +Q P K +R+RT+AD
Sbjct: 131 FPSSLPLPLQSPPLPFDYLQPPPTQQTQNQPPEIPKPKRQTQNQPPEIPKPKRRRTQADN 190
Query: 199 REIDPPYPWSTNRRAKIQTMEYLRSNNIATITGEVECSQCKEKYEMEYDLVSKFEEVARF 258
I+PPYPWST + A I +EYL +NNI TI GEV+C +C K E+EY+L+SKF+E+ RF
Sbjct: 191 SRIEPPYPWSTEKGAVIHKLEYLEANNILTIKGEVKCKRCDRKDEIEYELISKFDEIRRF 250
Query: 259 VARNGEDCNDRAPSSWATPVALNCRMCNQQKCVEAVIPKSDFKTINWLFLLLGQMLGNLQ 318
+ R ++ +DRAP W P+ LNC CN+++CVE +I +++ INWLFLLLG LG L+
Sbjct: 251 IEREKDNMHDRAPDRWVNPILLNCNFCNKEECVEPIISEAN-SNINWLFLLLGNFLGCLK 310
Query: 319 LDQLRYFCTHTNNHRTGAKDRLLYQTYITLCQQL 327
L QL+YFCT TN HRTGAKDRL+Y TY+ LC+QL
Sbjct: 311 LSQLKYFCTQTNIHRTGAKDRLIYLTYLALCKQL 334
BLAST of Sed0015323 vs. NCBI nr
Match:
XP_038895979.1 (junction-mediating and -regulatory protein-like [Benincasa hispida])
HSP 1 Score: 217.2 bits (552), Expect = 2.1e-52
Identity = 119/250 (47.60%), Postives = 156/250 (62.40%), Query Frame = 0
Query: 95 WPSQQGLS-QLPGPSQPSSFQPDQPL-----QPRPSQEGSSQLLVPTPPLNQRQHKRIAN 154
W S LS +LP P S P P P P LL T L+ R+ +
Sbjct: 13 WQSNLELSLRLPSPPPLESPPPPPPYPPPLESPPPPSPLEYPLLSTTTSLSPRKTPNESE 72
Query: 155 DI------STTNHQE------PATTKERRQRTKADEREIDPPYPWSTNRRAKIQTMEYLR 214
+I T+NHQ+ + RR+RT+AD I+PPYPWST+RRA I ++YL+
Sbjct: 73 EIPTQHNNETSNHQQQPMEIVEPQPRPRRRRTRADMTRIEPPYPWSTDRRAVIHELKYLQ 132
Query: 215 SNNIATITGEVECSQCKEKYEMEYDLVSKFEEVARFVARNGEDCNDRAPSSWATPVALNC 274
SNNI TI GEV+C +C++KYEMEYDL++KF E+ARF+ + +DRAP W P+ NC
Sbjct: 133 SNNIVTIKGEVKCKKCEQKYEMEYDLMNKFNEIARFIEYEKDSMHDRAPKCWTKPILPNC 192
Query: 275 RMCNQQKCVEAVIPKSDFKTINWLFLLLGQMLGNLQLDQLRYFCTHTNNHRTGAKDRLLY 327
+CN+++CVE VI + D+ INWLFLLLG+ LG L+L QL+YFC TN HRTGAK+RLLY
Sbjct: 193 NLCNKERCVEPVISEEDYTKINWLFLLLGKFLGCLKLKQLKYFCAQTNIHRTGAKNRLLY 252
BLAST of Sed0015323 vs. NCBI nr
Match:
XP_022135937.1 (uncharacterized protein LOC111007768 [Momordica charantia])
HSP 1 Score: 210.7 bits (535), Expect = 1.9e-50
Identity = 109/239 (45.61%), Postives = 147/239 (61.51%), Query Frame = 0
Query: 90 PLLQPWPSQQGLSQLPGPSQPSSFQPDQPLQPRPSQEGSSQLLVPTPPLNQRQHKRIAND 149
P L+P P L S P S +Q + S S L V P R R
Sbjct: 41 PPLEPQPETLDL------STPLSTTTNQIMHSSTSSRNSQSLRVRRPRARARVRVRARAS 100
Query: 150 ISTTNHQEPAT--TKERRQRTKADEREIDPPYPWSTNRRAKIQTMEYLRSNNIATITGEV 209
S +EPA+ ++RR R + I PPYPWST +A + + YLR N I TITG+V
Sbjct: 101 PSPRRAREPASPVVRQRRSRVELKNTPIKPPYPWSTEHQAVVHDLNYLRENQILTITGDV 160
Query: 210 ECSQCKEKYEMEYDLVSKFEEVARFVARNGEDCNDRAPSSWATPVALNCRMCNQQKCVEA 269
C +C+++Y +EYDL++KFEE+A F+ +N +DRAP SW P L+C++C ++ CV
Sbjct: 161 RCDRCEKQYTIEYDLMTKFEEIASFIEKNKATLHDRAPESWTNPNFLDCKLCGEENCVRP 220
Query: 270 VIPKSDFKTINWLFLLLGQMLGNLQLDQLRYFCTHTNNHRTGAKDRLLYQTYITLCQQL 327
IP+ D K INWLFLLLGQM+G L+L+ L+YFC +TNNHRTGAK+RL+Y TY+TLC+QL
Sbjct: 221 TIPEGDNKNINWLFLLLGQMIGRLKLEHLKYFCAYTNNHRTGAKNRLVYLTYLTLCKQL 273
BLAST of Sed0015323 vs. NCBI nr
Match:
XP_022135938.1 (probable serine/threonine-protein kinase samkC [Momordica charantia])
HSP 1 Score: 210.3 bits (534), Expect = 2.5e-50
Identity = 132/320 (41.25%), Postives = 185/320 (57.81%), Query Frame = 0
Query: 15 DEG--LNLELSLAPPSSSSSPPHHKPKRSKSVKFPSICHQ-EPPNIHELAPLQLSLFLDP 74
D+G L+LELSL P P + ++ + + + P +++ P Q L P
Sbjct: 33 DDGNDLDLELSLRLPLQKKFFRRPLPGENTPLQQQFLFYMAQVPLENKVPPQQFYLHSLP 92
Query: 75 SQPGPLLAPSQLNSSQWGPLLQPWPSQQGLSQLPGPSQPSSFQPDQPL-QPRPSQEGSSQ 134
S+ + ++ S P L P Q L P P QP QP+ P+ P S +SQ
Sbjct: 93 SEES---TSTPISPSDPHP-LSSQPQPQSLQLQPQPLQPQP-QPEPPIPHPSTSSCNTSQ 152
Query: 135 LLVPTPPLNQRQHKRIANDISTTNHQEPATTKERRQRTKADEREIDPPYPWSTNRRAKIQ 194
L P+ Q + S+ Q+ RR R K + I+PPYPWST RA +
Sbjct: 153 SLKPSRKRRSSQESPSTHPSSSEQRQQKPNI-SRRPRIKPKDTAIEPPYPWSTANRAVVH 212
Query: 195 TMEYLRSNNIATITGEVECSQCKEKYEMEYDLVSKFEEVARFVARNGEDCNDRAPSSWAT 254
++YL+ N I TITG+V+CSQC+++Y++EYDLV+KF+E+A F+ +N + +DRAPSSW
Sbjct: 213 DLKYLQQNQILTITGDVKCSQCQKQYKIEYDLVTKFDEIASFIEKNKDTLHDRAPSSWTN 272
Query: 255 PVALNCRMCNQQKCVEAVIP----KSDFKTINWLFLLLGQMLGNLQLDQLRYFCTHTNNH 314
P NC+ C Q+ C+ VIP D+K INWLFLLLGQM+G L L L+YFCT+TNNH
Sbjct: 273 PNLPNCKFCGQESCMRPVIPPEDEDDDYKNINWLFLLLGQMIGCLGLKHLKYFCTYTNNH 332
Query: 315 RTGAKDRLLYQTYITLCQQL 327
RT AKDRL+Y TY++LC+QL
Sbjct: 333 RTAAKDRLVYLTYLSLCKQL 346
BLAST of Sed0015323 vs. NCBI nr
Match:
XP_011652763.1 (uncharacterized protein LOC105435088 [Cucumis sativus])
HSP 1 Score: 209.9 bits (533), Expect = 3.3e-50
Identity = 132/315 (41.90%), Postives = 181/315 (57.46%), Query Frame = 0
Query: 12 QTEDEGLNLELSLAPPSSSSSPPHHKPKRSKSVKFPSICHQEPPNIHELAPLQLSLFLDP 71
++ D+ ++ LSL PP S P P+ S++ P+ P PL L L L P
Sbjct: 5 ESGDQCISQWLSLRPPFQSPPP---SPQTLLSLRLPT--QSLTP------PLSLHLSLHP 64
Query: 72 SQPGPLLAPSQLNSSQWGPLLQPWPSQQGLSQLPGPSQPSSFQPDQPLQPRPSQEGSSQL 131
+P P P Q ++ PL P + S L PSQ P LQP +Q+ ++
Sbjct: 65 PRPHP--PPPQHRPLEFSPL--PSTAADPPSSLLLPSQSPDLLPPDRLQPPSTQQTQNEA 124
Query: 132 LVPTPPLNQRQHKRIANDISTTNHQEPATTKERRQRTKADEREIDPPYPWSTNRRAKIQT 191
P + Q++ N + P + +R R +AD I+PPYPWST + A I
Sbjct: 125 DEEIRPTKRTQNE--------PNEELP---RPKRTRKQADTSRIEPPYPWSTEQGAIIHK 184
Query: 192 MEYLRSNNIATITGEVECSQCKEKYEMEYDLVSKFEEVARFVARNGEDCNDRAPSSWATP 251
+EYL++NNI TI GEV+C +CK K E+EYDL+SKFEE+ +F+ R + +DRAP+ W P
Sbjct: 185 LEYLQANNIRTIKGEVKCKRCKRKDEIEYDLMSKFEEMIKFIEREKCNMHDRAPNCWTNP 244
Query: 252 VALNCRMCNQQKCVEAVIPKSDFKTINWLFLLLGQMLGNLQLDQLRYFCTHTNNHRTGAK 311
LNC+ CN++KCVE +IP + INWLFLLLG LG L+L QL++FCT T HRTGAK
Sbjct: 245 TLLNCKFCNKEKCVEPIIPAGNDNKINWLFLLLGNFLGRLKLTQLKHFCTQTKIHRTGAK 293
Query: 312 DRLLYQTYITLCQQL 327
DRL+Y TY LC+QL
Sbjct: 305 DRLVYFTYFGLCKQL 293
BLAST of Sed0015323 vs. ExPASy TrEMBL
Match:
A0A1S3AZB1 (protein PAF1 homolog OS=Cucumis melo OX=3656 GN=LOC103484199 PE=4 SV=1)
HSP 1 Score: 223.0 bits (567), Expect = 1.8e-54
Identity = 145/334 (43.41%), Postives = 188/334 (56.29%), Query Frame = 0
Query: 19 NLELSLAPPSSSSSPPHHKPKRSKSVKFPSICHQEPPNIHELAPLQLSLFLDPSQPGPLL 78
NL+LSL PP S PP + + F S PP++ L L LSL L P P
Sbjct: 11 NLQLSLRPPFQSPPPPSPQSLFTLHSSFQS----PPPSLQSLQSL-LSLRLPTQSPTP-- 70
Query: 79 APSQLNSSQWGPLLQPWP----------SQQGLSQLPGPSQPSSFQ---PDQPLQPRPSQ 138
P+Q + SQ LQP P S Q P P P SF P P P++
Sbjct: 71 -PTQSSLSQ-HLSLQPPPSPPHERLLCVSPQPPHPPPPPEHPLSFHLLLESPPPPPSPAE 130
Query: 139 EGSS-QLLVPTPPL------------NQRQHKRIANDISTTNHQEPATTKERRQRTKADE 198
SS L + +PPL Q Q I T +Q P K +R+RT+AD
Sbjct: 131 FPSSLPLPLQSPPLPFDYLQPPPTQQTQNQPPEIPKPKRQTQNQPPEIPKPKRRRTQADN 190
Query: 199 REIDPPYPWSTNRRAKIQTMEYLRSNNIATITGEVECSQCKEKYEMEYDLVSKFEEVARF 258
I+PPYPWST + A I +EYL +NNI TI GEV+C +C K E+EY+L+SKF+E+ RF
Sbjct: 191 SRIEPPYPWSTEKGAVIHKLEYLEANNILTIKGEVKCKRCDRKDEIEYELISKFDEIRRF 250
Query: 259 VARNGEDCNDRAPSSWATPVALNCRMCNQQKCVEAVIPKSDFKTINWLFLLLGQMLGNLQ 318
+ R ++ +DRAP W P+ LNC CN+++CVE +I +++ INWLFLLLG LG L+
Sbjct: 251 IEREKDNMHDRAPDRWVNPILLNCNFCNKEECVEPIISEAN-SNINWLFLLLGNFLGCLK 310
Query: 319 LDQLRYFCTHTNNHRTGAKDRLLYQTYITLCQQL 327
L QL+YFCT TN HRTGAKDRL+Y TY+ LC+QL
Sbjct: 311 LSQLKYFCTQTNIHRTGAKDRLIYLTYLALCKQL 334
BLAST of Sed0015323 vs. ExPASy TrEMBL
Match:
A0A6J1C462 (uncharacterized protein LOC111007768 OS=Momordica charantia OX=3673 GN=LOC111007768 PE=4 SV=1)
HSP 1 Score: 210.7 bits (535), Expect = 9.3e-51
Identity = 109/239 (45.61%), Postives = 147/239 (61.51%), Query Frame = 0
Query: 90 PLLQPWPSQQGLSQLPGPSQPSSFQPDQPLQPRPSQEGSSQLLVPTPPLNQRQHKRIAND 149
P L+P P L S P S +Q + S S L V P R R
Sbjct: 41 PPLEPQPETLDL------STPLSTTTNQIMHSSTSSRNSQSLRVRRPRARARVRVRARAS 100
Query: 150 ISTTNHQEPAT--TKERRQRTKADEREIDPPYPWSTNRRAKIQTMEYLRSNNIATITGEV 209
S +EPA+ ++RR R + I PPYPWST +A + + YLR N I TITG+V
Sbjct: 101 PSPRRAREPASPVVRQRRSRVELKNTPIKPPYPWSTEHQAVVHDLNYLRENQILTITGDV 160
Query: 210 ECSQCKEKYEMEYDLVSKFEEVARFVARNGEDCNDRAPSSWATPVALNCRMCNQQKCVEA 269
C +C+++Y +EYDL++KFEE+A F+ +N +DRAP SW P L+C++C ++ CV
Sbjct: 161 RCDRCEKQYTIEYDLMTKFEEIASFIEKNKATLHDRAPESWTNPNFLDCKLCGEENCVRP 220
Query: 270 VIPKSDFKTINWLFLLLGQMLGNLQLDQLRYFCTHTNNHRTGAKDRLLYQTYITLCQQL 327
IP+ D K INWLFLLLGQM+G L+L+ L+YFC +TNNHRTGAK+RL+Y TY+TLC+QL
Sbjct: 221 TIPEGDNKNINWLFLLLGQMIGRLKLEHLKYFCAYTNNHRTGAKNRLVYLTYLTLCKQL 273
BLAST of Sed0015323 vs. ExPASy TrEMBL
Match:
A0A6J1C690 (probable serine/threonine-protein kinase samkC OS=Momordica charantia OX=3673 GN=LOC111007769 PE=4 SV=1)
HSP 1 Score: 210.3 bits (534), Expect = 1.2e-50
Identity = 132/320 (41.25%), Postives = 185/320 (57.81%), Query Frame = 0
Query: 15 DEG--LNLELSLAPPSSSSSPPHHKPKRSKSVKFPSICHQ-EPPNIHELAPLQLSLFLDP 74
D+G L+LELSL P P + ++ + + + P +++ P Q L P
Sbjct: 33 DDGNDLDLELSLRLPLQKKFFRRPLPGENTPLQQQFLFYMAQVPLENKVPPQQFYLHSLP 92
Query: 75 SQPGPLLAPSQLNSSQWGPLLQPWPSQQGLSQLPGPSQPSSFQPDQPL-QPRPSQEGSSQ 134
S+ + ++ S P L P Q L P P QP QP+ P+ P S +SQ
Sbjct: 93 SEES---TSTPISPSDPHP-LSSQPQPQSLQLQPQPLQPQP-QPEPPIPHPSTSSCNTSQ 152
Query: 135 LLVPTPPLNQRQHKRIANDISTTNHQEPATTKERRQRTKADEREIDPPYPWSTNRRAKIQ 194
L P+ Q + S+ Q+ RR R K + I+PPYPWST RA +
Sbjct: 153 SLKPSRKRRSSQESPSTHPSSSEQRQQKPNI-SRRPRIKPKDTAIEPPYPWSTANRAVVH 212
Query: 195 TMEYLRSNNIATITGEVECSQCKEKYEMEYDLVSKFEEVARFVARNGEDCNDRAPSSWAT 254
++YL+ N I TITG+V+CSQC+++Y++EYDLV+KF+E+A F+ +N + +DRAPSSW
Sbjct: 213 DLKYLQQNQILTITGDVKCSQCQKQYKIEYDLVTKFDEIASFIEKNKDTLHDRAPSSWTN 272
Query: 255 PVALNCRMCNQQKCVEAVIP----KSDFKTINWLFLLLGQMLGNLQLDQLRYFCTHTNNH 314
P NC+ C Q+ C+ VIP D+K INWLFLLLGQM+G L L L+YFCT+TNNH
Sbjct: 273 PNLPNCKFCGQESCMRPVIPPEDEDDDYKNINWLFLLLGQMIGCLGLKHLKYFCTYTNNH 332
Query: 315 RTGAKDRLLYQTYITLCQQL 327
RT AKDRL+Y TY++LC+QL
Sbjct: 333 RTAAKDRLVYLTYLSLCKQL 346
BLAST of Sed0015323 vs. ExPASy TrEMBL
Match:
A0A0A0LAK2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G153700 PE=4 SV=1)
HSP 1 Score: 209.9 bits (533), Expect = 1.6e-50
Identity = 132/315 (41.90%), Postives = 181/315 (57.46%), Query Frame = 0
Query: 12 QTEDEGLNLELSLAPPSSSSSPPHHKPKRSKSVKFPSICHQEPPNIHELAPLQLSLFLDP 71
++ D+ ++ LSL PP S P P+ S++ P+ P PL L L L P
Sbjct: 5 ESGDQCISQWLSLRPPFQSPPP---SPQTLLSLRLPT--QSLTP------PLSLHLSLHP 64
Query: 72 SQPGPLLAPSQLNSSQWGPLLQPWPSQQGLSQLPGPSQPSSFQPDQPLQPRPSQEGSSQL 131
+P P P Q ++ PL P + S L PSQ P LQP +Q+ ++
Sbjct: 65 PRPHP--PPPQHRPLEFSPL--PSTAADPPSSLLLPSQSPDLLPPDRLQPPSTQQTQNEA 124
Query: 132 LVPTPPLNQRQHKRIANDISTTNHQEPATTKERRQRTKADEREIDPPYPWSTNRRAKIQT 191
P + Q++ N + P + +R R +AD I+PPYPWST + A I
Sbjct: 125 DEEIRPTKRTQNE--------PNEELP---RPKRTRKQADTSRIEPPYPWSTEQGAIIHK 184
Query: 192 MEYLRSNNIATITGEVECSQCKEKYEMEYDLVSKFEEVARFVARNGEDCNDRAPSSWATP 251
+EYL++NNI TI GEV+C +CK K E+EYDL+SKFEE+ +F+ R + +DRAP+ W P
Sbjct: 185 LEYLQANNIRTIKGEVKCKRCKRKDEIEYDLMSKFEEMIKFIEREKCNMHDRAPNCWTNP 244
Query: 252 VALNCRMCNQQKCVEAVIPKSDFKTINWLFLLLGQMLGNLQLDQLRYFCTHTNNHRTGAK 311
LNC+ CN++KCVE +IP + INWLFLLLG LG L+L QL++FCT T HRTGAK
Sbjct: 245 TLLNCKFCNKEKCVEPIIPAGNDNKINWLFLLLGNFLGRLKLTQLKHFCTQTKIHRTGAK 293
Query: 312 DRLLYQTYITLCQQL 327
DRL+Y TY LC+QL
Sbjct: 305 DRLVYFTYFGLCKQL 293
BLAST of Sed0015323 vs. ExPASy TrEMBL
Match:
A0A6J1GM83 (mucin-16-like OS=Cucurbita moschata OX=3662 GN=LOC111455541 PE=4 SV=1)
HSP 1 Score: 204.9 bits (520), Expect = 5.1e-49
Identity = 109/255 (42.75%), Postives = 156/255 (61.18%), Query Frame = 0
Query: 77 LLAPSQLNSSQWGPLLQPWPSQQGLSQLPGPSQPSSFQPDQPLQ-PRPSQEGSSQLLVPT 136
L P + + + P +Q SQ P +Q +QP+ P+ +E +Q
Sbjct: 349 LAIPHNIRETSNQSVAIPHAIEQTSSQPPTITQAIRETLNQPVAIPQTVEETPNQSTTIH 408
Query: 137 PPLNQRQHKRIANDISTTNHQEPATTKERRQRTKADEREIDPPYPWSTNRRAKIQTMEYL 196
+ Q ++ +T H + + RR RT+AD R I+PPYPWS +RA I +EYL
Sbjct: 409 QAIEQTPNQSTTIPQATNGH-STSRPRRRRSRTRADTRRIEPPYPWSAEQRASIHNLEYL 468
Query: 197 RSNNIATITGEVECSQCKEKYEMEYDLVSKFEEVARFVARNGEDCNDRAPSSWATPVALN 256
+SNNI TI G+V C +C+ YE+EY+L++KF+E+ARF+ R ++ +DRAP W P+ N
Sbjct: 469 QSNNIVTIKGDVRCKKCERFYEIEYNLMNKFDEIARFIERERDNMHDRAPICWKNPILPN 528
Query: 257 CRMCNQQKCVEAVIPKSD----FKTINWLFLLLGQMLGNLQLDQLRYFCTHTNNHRTGAK 316
C C ++ CVE +IP + F INWLFLLLGQ++G L+L QL+YFC HT NHRTGAK
Sbjct: 529 CEHCREENCVEPMIPDEEDDNQFSRINWLFLLLGQLIGRLKLKQLKYFCAHTYNHRTGAK 588
Query: 317 DRLLYQTYITLCQQL 327
DRL++ TY+ LC+QL
Sbjct: 589 DRLIFLTYLALCKQL 602
BLAST of Sed0015323 vs. TAIR 10
Match:
AT1G49330.1 (hydroxyproline-rich glycoprotein family protein )
HSP 1 Score: 155.6 bits (392), Expect = 6.8e-38
Identity = 104/288 (36.11%), Postives = 141/288 (48.96%), Query Frame = 0
Query: 70 DPSQPGPLLAPSQLNSSQWGPLLQPWPSQQGLSQLPGPSQPSSFQPDQPLQPRPSQEGSS 129
D P L S SSQ P+ P P + P F P P+ ++
Sbjct: 41 DEQLPLSLTLGSTSYSSQIRPVKSPVPI----------APPPEFPGPVTTWPTPADFLAT 100
Query: 130 QLLVPTPPLNQRQ--------HKRIANDISTTNH-------------------QEPATTK 189
+ +VP PP Q ++ N H + P T
Sbjct: 101 RSMVPDPPPPSHQIPLWMSNYFQQTPNPPQLVTHFFPPSGLAPPSSNLTPPPVKRPVTGS 160
Query: 190 ER--RQRTKADERE--IDPPYPWSTNRRAKIQTMEYLRSNNIATITGEVECSQCKEKYEM 249
R R R+ ++ I PP+PW+TNRR +IQ++EYL SN I TITGEV+C C++ Y++
Sbjct: 161 VRIYRSRSTVSKKSDTISPPFPWATNRRGEIQSLEYLESNQITTITGEVQCRHCEKVYQV 220
Query: 250 EYDLVSKFEEVARFVARNGEDCNDRAPSSWATPVALNCRMCNQQKCVEAVIPKSDFKTIN 309
Y+L +F EV +F DRA WA P C +C ++K V+ VI + IN
Sbjct: 221 SYNLRERFAEVVKFYLTEKRKMRDRAHKDWAYPEQRRCELCGREKAVKPVIAERK-SQIN 280
Query: 310 WLFLLLGQMLGNLQLDQLRYFCTHTNNHRTGAKDRLLYQTYITLCQQL 327
WLFLLLGQ LG L+QL+ FC H+ NHRTGAKDR+LY TY+ LC+ L
Sbjct: 281 WLFLLLGQTLGFCTLEQLKNFCKHSKNHRTGAKDRVLYLTYMGLCKML 317
BLAST of Sed0015323 vs. TAIR 10
Match:
AT2G16190.1 (BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT1G49330.1); Has 77 Blast hits to 77 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 13; Plants - 56; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). )
HSP 1 Score: 154.1 bits (388), Expect = 2.0e-37
Identity = 112/322 (34.78%), Postives = 165/322 (51.24%), Query Frame = 0
Query: 13 TEDEGLNLELSLAPPSSSSSPPHHKPKRSKSVKFPSICHQEPPNIHELAPLQLSLFLDP- 72
++DE L+L L L + +PK++ + K + P E + L DP
Sbjct: 2 SDDEDLDLSLRL----------YTQPKKTVNEKNGLV----PQRQEEQGEVMQLLTSDPP 61
Query: 73 --SQPGPLLAPSQLNSSQWGPLLQPWPSQQGLSQLPGPS----QPSSFQPDQPLQPRPSQ 132
+QP P P+ + S G P+Q +P P+ P +QP + + P P
Sbjct: 62 QNTQPSP-PQPNDMTSFANGTNHVIVPTQALEQAVPPPNVSVRTPLPYQPSEEVLPPPQL 121
Query: 133 EGSSQLLVPTPPLNQRQHKRIANDISTTNHQEPATTKERRQRTKADEREIDPPYPWSTNR 192
+ + + TP + R + N + P ER +REI PPYPW+T +
Sbjct: 122 NQVATVALATP-----RRGRPPGGQARRNSKRPVAGVER----NVGDREIVPPYPWATKK 181
Query: 193 RAKIQTMEYLRSNNIATITGEVECSQCKEKYEMEYDLVSKFEEVARFVARNGEDCNDRAP 252
KIQ+ L SNNI I+G+V C C +EY+L KF E+ ++ N E+ RAP
Sbjct: 182 PGKIQSFRDLSSNNINVISGQVHCKTCDRTDTVEYNLEEKFSELYGYIKVNKEEMRHRAP 241
Query: 253 SSWATPVALNCRMCNQQKCVEAVIPKSDFKTINWLFLLLGQMLGNLQLDQLRYFCTHTNN 312
SW+TP + CR C + ++ V+ + + INWLFLLLGQMLG LDQLRYFC +
Sbjct: 242 GSWSTPKLIPCRTCKSE--MKPVMSERK-EEINWLFLLLGQMLGCCTLDQLRYFCQLNSK 296
Query: 313 HRTGAKDRLLYQTYITLCQQLN 328
HRTG+KDR++Y TY++LC+QL+
Sbjct: 302 HRTGSKDRVVYITYLSLCKQLD 296
BLAST of Sed0015323 vs. TAIR 10
Match:
AT2G16190.2 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT1G49330.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )
HSP 1 Score: 111.7 bits (278), Expect = 1.1e-24
Identity = 94/291 (32.30%), Postives = 139/291 (47.77%), Query Frame = 0
Query: 13 TEDEGLNLELSLAPPSSSSSPPHHKPKRSKSVKFPSICHQEPPNIHELAPLQLSLFLDP- 72
++DE L+L L L + +PK++ + K + P E + L DP
Sbjct: 2 SDDEDLDLSLRL----------YTQPKKTVNEKNGLV----PQRQEEQGEVMQLLTSDPP 61
Query: 73 --SQPGPLLAPSQLNSSQWGPLLQPWPSQQGLSQLPGPS----QPSSFQPDQPLQPRPSQ 132
+QP P P+ + S G P+Q +P P+ P +QP + + P P
Sbjct: 62 QNTQPSP-PQPNDMTSFANGTNHVIVPTQALEQAVPPPNVSVRTPLPYQPSEEVLPPPQL 121
Query: 133 EGSSQLLVPTPPLNQRQHKRIANDISTTNHQEPATTKERRQRTKADEREIDPPYPWSTNR 192
+ + + TP + R + N + P ER +REI PPYPW+T +
Sbjct: 122 NQVATVALATP-----RRGRPPGGQARRNSKRPVAGVER----NVGDREIVPPYPWATKK 181
Query: 193 RAKIQTMEYLRSNNIATITGEVECSQCKEKYEMEYDLVSKFEEVARFVARNGEDCNDRAP 252
KIQ+ L SNNI I+G+V C C +EY+L KF E+ ++ N E+ RAP
Sbjct: 182 PGKIQSFRDLSSNNINVISGQVHCKTCDRTDTVEYNLEEKFSELYGYIKVNKEEMRHRAP 241
Query: 253 SSWATPVALNCRMCNQQKCVEAVIPKSDFKTINWLFLLLGQMLGNLQLDQL 297
SW+TP + CR C + ++ V+ + + INWLFLLLGQMLG LDQL
Sbjct: 242 GSWSTPKLIPCRTCKSE--MKPVMSERK-EEINWLFLLLGQMLGCCTLDQL 265
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A1S3AZB1 | 1.8e-54 | 43.41 | protein PAF1 homolog OS=Cucumis melo OX=3656 GN=LOC103484199 PE=4 SV=1 | [more] |
| A0A6J1C462 | 9.3e-51 | 45.61 | uncharacterized protein LOC111007768 OS=Momordica charantia OX=3673 GN=LOC111007... | [more] |
| A0A6J1C690 | 1.2e-50 | 41.25 | probable serine/threonine-protein kinase samkC OS=Momordica charantia OX=3673 GN... | [more] |
| A0A0A0LAK2 | 1.6e-50 | 41.90 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G153700 PE=4 SV=1 | [more] |
| A0A6J1GM83 | 5.1e-49 | 42.75 | mucin-16-like OS=Cucurbita moschata OX=3662 GN=LOC111455541 PE=4 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| AT1G49330.1 | 6.8e-38 | 36.11 | hydroxyproline-rich glycoprotein family protein | [more] |
| AT2G16190.1 | 2.0e-37 | 34.78 | BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein fam... | [more] |
| AT2G16190.2 | 1.1e-24 | 32.30 | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow... | [more] |
