Sed0015314 (gene) Chayote v1

Overview


Name	Sed0015314
Type	gene
Organism	Sechium edule (Chayote v1)
Description	ATP synthase subunit e, mitochondrial
Location	LG13: 21090838 .. 21093035 (-)
RNA-Seq Expression	Sed0015314
Synteny	Sed0015314

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTAAATTAATTTTGTAGGAAGTCGGGGCGGGTGGAATTGATAGGTAACTTGAGATCCGAAAACGCAGGGGAAATTAGGGTTTTAGGATCCAAGCATTTCTCTGTTGCCACTGATCATCTTCTTCATCGATCTAATGGCGCCACCGCCTGGACCTTACTCCGGCACCAGCACTCTCGCTCTGGTATTTTGCCTTTCTCTTTTACCTCCAATCATCTGCGGATCTTCTTTCTTTCCTTCACATTTCCGATTTCTAATTGCTTCGATCTCTGTCGTAATTGGTGTGGATCATTATCCACCGTTCAAAATTTGCATTTAAATGTATCTAAATTTACGCGATTCAGAAGTCTCAATCGCGTCGTAATTGCTGTGGATCTATATCTACAATTGAAAATTGTATTTAAATGCATCTTAACTTACACAATTCAGAAAATATCTACCATTGGAAATTGTATTTGAATGCATATTAACTTGCACAATTCAGTAGTTTCAATCGGGTCGTCTATGATTGAATTTTTTTCTGTATTTCTTCGTTATATCAAATTTTAAATCCTTTGTTGGGAATCAAATGGATTGGTTCATTTTAGAGTCTAAATTTGTTTTATGATCCGATTTTTATGGGGCCTGGTTTACACAGGTAGCACGTGCATCAGCATTCACCTTTGGTTTGGTTTACGGAAACATTAAGCTCAAGGTTCTGAAGGTATATTGTACTCTACTGTTACAGAGTTTTCTGTTTGATCGTATGGTGTATCTGTCTACAAATCAACTCACCCATGTTTATTACAAGTTTGAAAATATGAGTGTCATGAATTCATGTAATCTATTTCTTTAATGGTTTTATCTTGTTCCCCTATTTACATTGACATTTCTAATTTGAAAAAGATGTATTGTTGGAAGCATAAAGTTCAACCCTTGTGCCTGTTTAGTATTTATTGGTACAAACTTATCCAAAAAATCAAAGAAAAATACAAACGTGACCCTAAAATCAAAGAAAAATAGCTATATCTTACAAAAGAAAATCAATTTTATAGTTATGTAGAACTTAGAAGGATTTAGCTATGAGCCATTTTTACTGGATAAGAAAGTTGGTTGATCGTGGAGCAAAGGCTGGATAAAACATGGATAGGCATGCATTATCATCCAAAAGGCTCATTTCCTTCTTTCTTTTACTGTACTCACTTTTTCGATTATTACGTATATATTTTATGCCCAAAATATGGGGTTTCAAGTAGCAACCCTACATACCCTCATTCCCTAACCTGGTGGAAAATTACCGCTCCGTTGTTCCTGCTTTCCCATTACCCTACTAATATTAGATTAGCAAACCAAGATGTGCTTTTTGCCCTGCCCTTGCTAAGATGTTGATCTTAAGAGGTGTAGAAGTCTGTATTTAGTACTTTCCTGTTAAGGAGAGGAAAGGCTCACTTCTGAAGCTACTTTACTCTCCGAGGTTTAGAAGGAATGAGTCTTAAGAGGTTACAAAGGATCAGAAAGGAGAAAGGAAGGTGGTTGCATCAACTTCCATGTCATGTTATTTGTTCTTAGATTATGATAAAAGTACGAGCATCTAACTATCATGAGTTGGCTTTTAGTGGTCAAGAGGGTCTTGGGGAACAAAAAAATTAAAAGTTTAGTCCATAATAATCACTCATTTAGGAATTAATTTTATTTTGATTTTTGTCTTGCGAGATTAGTCGAAGCGTGCATAAACTGGTCTAAACTCTCACAAATACTAAAAAAAAGTACTGGACCGAATGTATGCACATGAAGCATAGAACTGTCATATGAACCTTATCAGTTAACTAACTGTATAGAATATCATTTTGATTGTCTTAAGAACATATCGTTTGGTTGTATTTTTGTGCAATTGCCAGGCAAAGGCCAAGTCACATGCGAAAGCTGAAGCCAAGGCACATCATTGATGAGCATATTTGCTGATGCAGTTTGTAGCAGTGGTAGAGATGGAAAACATTTGAGAAACTCTGATCATTGATTGGAGAAATGTGATTTTTTTGCTTATGGTTTATTTGATTCTGTTTTTATCTTACTTCCAAAGCAATAGAGAATTTCTTTGTTTAAACGAGTTGCGTATTGCAAATACTGTATGGTATATGCTTTACTTTTTCAGTTGATTGGCAATTCTGCCTTGTGAAGATGTTCTTATGAATAAAACTTGATCATGATTGTCTTTGATCTA

mRNA sequence

ATTAAATTAATTTTGTAGGAAGTCGGGGCGGGTGGAATTGATAGGTAACTTGAGATCCGAAAACGCAGGGGAAATTAGGGTTTTAGGATCCAAGCATTTCTCTGTTGCCACTGATCATCTTCTTCATCGATCTAATGGCGCCACCGCCTGGACCTTACTCCGGCACCAGCACTCTCGCTCTGGTAGCACGTGCATCAGCATTCACCTTTGGTTTGGTTTACGGAAACATTAAGCTCAAGGTTCTGAAGGCAAAGGCCAAGTCACATGCGAAAGCTGAAGCCAAGGCACATCATTGATGAGCATATTTGCTGATGCAGTTTGTAGCAGTGGTAGAGATGGAAAACATTTGAGAAACTCTGATCATTGATTGGAGAAATGTGATTTTTTTGCTTATGGTTTATTTGATTCTGTTTTTATCTTACTTCCAAAGCAATAGAGAATTTCTTTGTTTAAACGAGTTGCGTATTGCAAATACTGTATGGTATATGCTTTACTTTTTCAGTTGATTGGCAATTCTGCCTTGTGAAGATGTTCTTATGAATAAAACTTGATCATGATTGTCTTTGATCTA

Coding sequence (CDS)

ATGGCGCCACCGCCTGGACCTTACTCCGGCACCAGCACTCTCGCTCTGGTAGCACGTGCATCAGCATTCACCTTTGGTTTGGTTTACGGAAACATTAAGCTCAAGGTTCTGAAGGCAAAGGCCAAGTCACATGCGAAAGCTGAAGCCAAGGCACATCATTGA

Protein sequence

MAPPPGPYSGTSTLALVARASAFTFGLVYGNIKLKVLKAKAKSHAKAEAKAHH

Homology

[Close]

BLAST of Sed0015314 vs. NCBI nr
Match: XP_008466504.1 (PREDICTED: uncharacterized protein LOC103503894 [Cucumis melo])

HSP 1 Score: 100.1 bits (248), Expect = 5.9e-18
Identity = 52/53 (98.11%), Postives = 52/53 (98.11%), Query Frame = 0


Query: 1  MAPPPGPYSGTSTLALVARASAFTFGLVYGNIKLKVLKAKAKSHAKAEAKAHH 54
          MAPPPGPYSGTSTLALVARASAFTFGLVYGNIKLKVLKAKAKS AKAEAKAHH
Sbjct: 1  MAPPPGPYSGTSTLALVARASAFTFGLVYGNIKLKVLKAKAKSRAKAEAKAHH 53

[Close]

BLAST of Sed0015314 vs. NCBI nr
Match: XP_022132454.1 (uncharacterized protein LOC111005275 [Momordica charantia])

HSP 1 Score: 100.1 bits (248), Expect = 5.9e-18
Identity = 51/53 (96.23%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 1  MAPPPGPYSGTSTLALVARASAFTFGLVYGNIKLKVLKAKAKSHAKAEAKAHH 54
          MAPPPGPYSGTSTLALVARASAFTFG+VYG+IKLKVLKAKAKSHAKAEAKAHH
Sbjct: 1  MAPPPGPYSGTSTLALVARASAFTFGVVYGSIKLKVLKAKAKSHAKAEAKAHH 53

[Close]

BLAST of Sed0015314 vs. NCBI nr
Match: XP_038898502.1 (uncharacterized protein LOC120086120 [Benincasa hispida])

HSP 1 Score: 98.2 bits (243), Expect = 2.2e-17
Identity = 51/53 (96.23%), Postives = 52/53 (98.11%), Query Frame = 0


Query: 1  MAPPPGPYSGTSTLALVARASAFTFGLVYGNIKLKVLKAKAKSHAKAEAKAHH 54
          MA PPGPYSGTSTLALVARASAFTFGLVYG+IKLKVLKAKAKSHAKAEAKAHH
Sbjct: 1  MATPPGPYSGTSTLALVARASAFTFGLVYGSIKLKVLKAKAKSHAKAEAKAHH 53

[Close]

BLAST of Sed0015314 vs. NCBI nr
Match: XP_022974819.1 (uncharacterized protein LOC111473599 [Cucurbita maxima])

HSP 1 Score: 97.8 bits (242), Expect = 2.9e-17
Identity = 51/53 (96.23%), Postives = 51/53 (96.23%), Query Frame = 0


Query: 1  MAPPPGPYSGTSTLALVARASAFTFGLVYGNIKLKVLKAKAKSHAKAEAKAHH 54
          MA PPGPYSGTSTLALVARASAFTFGLVYGNIKLKVLKAKAKSHAKAEAK HH
Sbjct: 1  MALPPGPYSGTSTLALVARASAFTFGLVYGNIKLKVLKAKAKSHAKAEAKTHH 53

[Close]

BLAST of Sed0015314 vs. NCBI nr
Match: XP_004147837.1 (uncharacterized protein LOC101217057 [Cucumis sativus])

HSP 1 Score: 96.7 bits (239), Expect = 6.5e-17
Identity = 50/53 (94.34%), Postives = 52/53 (98.11%), Query Frame = 0


Query: 1  MAPPPGPYSGTSTLALVARASAFTFGLVYGNIKLKVLKAKAKSHAKAEAKAHH 54
          MAPPPGPYSGTSTLALVARASAF+FGLVYG+IKLKVLKAKAKS AKAEAKAHH
Sbjct: 1  MAPPPGPYSGTSTLALVARASAFSFGLVYGSIKLKVLKAKAKSRAKAEAKAHH 53

[Close]

BLAST of Sed0015314 vs. ExPASy TrEMBL
Match: A0A6J1BT37 (ATP synthase subunit e, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111005275 PE=3 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 2.9e-18
Identity = 51/53 (96.23%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 1  MAPPPGPYSGTSTLALVARASAFTFGLVYGNIKLKVLKAKAKSHAKAEAKAHH 54
          MAPPPGPYSGTSTLALVARASAFTFG+VYG+IKLKVLKAKAKSHAKAEAKAHH
Sbjct: 1  MAPPPGPYSGTSTLALVARASAFTFGVVYGSIKLKVLKAKAKSHAKAEAKAHH 53

[Close]

BLAST of Sed0015314 vs. ExPASy TrEMBL
Match: A0A1S3CRK7 (uncharacterized protein LOC103503894 OS=Cucumis melo OX=3656 GN=LOC103503894 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 2.9e-18
Identity = 52/53 (98.11%), Postives = 52/53 (98.11%), Query Frame = 0


Query: 1  MAPPPGPYSGTSTLALVARASAFTFGLVYGNIKLKVLKAKAKSHAKAEAKAHH 54
          MAPPPGPYSGTSTLALVARASAFTFGLVYGNIKLKVLKAKAKS AKAEAKAHH
Sbjct: 1  MAPPPGPYSGTSTLALVARASAFTFGLVYGNIKLKVLKAKAKSRAKAEAKAHH 53

[Close]

BLAST of Sed0015314 vs. ExPASy TrEMBL
Match: A0A6J1IIN9 (uncharacterized protein LOC111473599 OS=Cucurbita maxima OX=3661 GN=LOC111473599 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.4e-17
Identity = 51/53 (96.23%), Postives = 51/53 (96.23%), Query Frame = 0


Query: 1  MAPPPGPYSGTSTLALVARASAFTFGLVYGNIKLKVLKAKAKSHAKAEAKAHH 54
          MA PPGPYSGTSTLALVARASAFTFGLVYGNIKLKVLKAKAKSHAKAEAK HH
Sbjct: 1  MALPPGPYSGTSTLALVARASAFTFGLVYGNIKLKVLKAKAKSHAKAEAKTHH 53

[Close]

BLAST of Sed0015314 vs. ExPASy TrEMBL
Match: A0A0A0LH44 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G866500 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 3.2e-17
Identity = 50/53 (94.34%), Postives = 52/53 (98.11%), Query Frame = 0


Query: 1  MAPPPGPYSGTSTLALVARASAFTFGLVYGNIKLKVLKAKAKSHAKAEAKAHH 54
          MAPPPGPYSGTSTLALVARASAF+FGLVYG+IKLKVLKAKAKS AKAEAKAHH
Sbjct: 1  MAPPPGPYSGTSTLALVARASAFSFGLVYGSIKLKVLKAKAKSRAKAEAKAHH 53

[Close]

BLAST of Sed0015314 vs. ExPASy TrEMBL
Match: A0A067H1L4 (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g0354532mg PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 4.1e-17
Identity = 47/53 (88.68%), Postives = 52/53 (98.11%), Query Frame = 0


Query: 1  MAPPPGPYSGTSTLALVARASAFTFGLVYGNIKLKVLKAKAKSHAKAEAKAHH 54
          MAPPPGPYSGTSTLALVARASAFTFG+VYGN+KLK+LK KAK+H+KAEAKAHH
Sbjct: 1  MAPPPGPYSGTSTLALVARASAFTFGVVYGNMKLKILKMKAKTHSKAEAKAHH 53

[Close]

BLAST of Sed0015314 vs. TAIR 10
Match: AT3G01130.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: M germinated pollen stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G15320.1); Has 64 Blast hits to 64 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 81.6 bits (200), Expect = 2.0e-16
Identity = 43/53 (81.13%), Postives = 44/53 (83.02%), Query Frame = 0


Query: 1  MAPPPGPYSGTSTLALVARASAFTFGLVYGNIKLKVLKAKAKSHAKAEAKAHH 54
          MAPPPG YSGTSTLALVARASAF  GL+YGNIKLK LK K  S  KAEAKAHH
Sbjct: 1  MAPPPGLYSGTSTLALVARASAFGLGLIYGNIKLKALKIKKNSQIKAEAKAHH 53

[Close]

BLAST of Sed0015314 vs. TAIR 10
Match: AT5G15320.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01130.1); Has 64 Blast hits to 64 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 72.0 bits (175), Expect = 1.6e-13
Identity = 39/53 (73.58%), Postives = 42/53 (79.25%), Query Frame = 0


Query: 1  MAPPPGPYSGTSTLALVARASAFTFGLVYGNIKLKVLKAKAKSHAKAEAKAHH 54
          M  PPG YSGTS+LALVARASAF  GLVYGN+KLKVLK K+ S  K EA AHH
Sbjct: 1  MTLPPGLYSGTSSLALVARASAFGLGLVYGNMKLKVLKIKSMSQKKVEATAHH 53

[Close]

BLAST of Sed0015314 vs. TAIR 10
Match: AT3G01130.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: M germinated pollen stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G15320.1); Has 64 Blast hits to 64 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 65.9 bits (159), Expect = 1.2e-11
Identity = 34/40 (85.00%), Postives = 35/40 (87.50%), Query Frame = 0


Query: 1  MAPPPGPYSGTSTLALVARASAFTFGLVYGNIKLKVLKAK 41
          MAPPPG YSGTSTLALVARASAF  GL+YGNIKLK LK K
Sbjct: 1  MAPPPGLYSGTSTLALVARASAFGLGLIYGNIKLKALKHK 40

[Close]

BLAST of Sed0015314 vs. TAIR 10
Match: AT5G15320.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01130.1); Has 64 Blast hits to 64 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 63.5 bits (153), Expect = 5.7e-11
Identity = 36/53 (67.92%), Postives = 40/53 (75.47%), Query Frame = 0


Query: 1  MAPPPGPYSGTSTLALVARASAFTFGLVYGNIKLKVLKAKAKSHAKAEAKAHH 54
          M  PPG YSGTS+LALVARASAF  GLVYGN+KLK+   K+ S  K EA AHH
Sbjct: 1  MTLPPGLYSGTSSLALVARASAFGLGLVYGNMKLKI---KSMSQKKVEATAHH 50

The following BLAST results are available for this feature:

BLAST of Sed0015314 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008466504.1	5.9e-18	98.11	PREDICTED: uncharacterized protein LOC103503894 [Cucumis melo]	[more]
XP_022132454.1	5.9e-18	96.23	uncharacterized protein LOC111005275 [Momordica charantia]	[more]
XP_038898502.1	2.2e-17	96.23	uncharacterized protein LOC120086120 [Benincasa hispida]	[more]
XP_022974819.1	2.9e-17	96.23	uncharacterized protein LOC111473599 [Cucurbita maxima]	[more]
XP_004147837.1	6.5e-17	94.34	uncharacterized protein LOC101217057 [Cucumis sativus]	[more]

BLAST of Sed0015314 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0015314 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BT37	2.9e-18	96.23	ATP synthase subunit e, mitochondrial OS=Momordica charantia OX=3673 GN=LOC11100...	[more]
A0A1S3CRK7	2.9e-18	98.11	uncharacterized protein LOC103503894 OS=Cucumis melo OX=3656 GN=LOC103503894 PE=...	[more]
A0A6J1IIN9	1.4e-17	96.23	uncharacterized protein LOC111473599 OS=Cucurbita maxima OX=3661 GN=LOC111473599...	[more]
A0A0A0LH44	3.2e-17	94.34	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G866500 PE=4 SV=1	[more]
A0A067H1L4	4.1e-17	88.68	Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g0354532mg PE=4 SV=...	[more]

BLAST of Sed0015314 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G01130.1	2.0e-16	81.13	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G15320.1	1.6e-13	73.58	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT3G01130.2	1.2e-11	85.00	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G15320.2	5.7e-11	67.92	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36028	OSJNBB0050O03.8 PROTEIN	coord: 1..53
None	No IPR available	PANTHER	PTHR36028:SF4	SUBFAMILY NOT NAMED	coord: 1..53

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0015314.1	Sed0015314.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015986	ATP synthesis coupled proton transport
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0000276	mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)
molecular_function	GO:0015078	proton transmembrane transporter activity