Sed0015260 (gene) Chayote v1
Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.GAGAAAATGAAGTCATTTGTGGTTCTTTGTTTGGTTCTAAGCTTAGTGGTAAGTAAGTCCACATCCCAAGAACTTTCTTCCAATGATTGTTATCTTAACTGCATAACGGGTGTCTGCGCCATCGAAGGTTTATTCAGTTGTGGAATGTGCATAGTCAATTGTGTTTTGACACCGAATGATCTTTCACCAATGGAATTGCGCCACATGGATAACGGTTACTTTTGCAAGCTTGGTTGTTCCGTTTCTCGATGCACCAACCTCCGCACTAACAATCACCCAGGTTCGTTAAATAGTATGAGATTTCATTTCATAATTATTTGGTGATGAGATGAGAACTCATCTATCTTTTAAATGTTAAAGGTCTCCTTCACATTTTTTAGGGATGTTTAATATATTCTCTCAAAATGGTGGCTCTTTTGAATTCAACAATTTTGAATTAGATCTCAATTTCATTTCTATTGGACCAAATACTCATTTCTCCGGCATATTCCTTTTATAAATTTTATAAATAGTGATATTTCTTGTATTGTATGTACCTTACATGCTATGTTATTTTGTATATGTGTAAGGTTACCTAGAGTCTTAAGGGACTAAGGAGTCATGATACTTTTTTTAATAGATGTATACCACCCAAATGTTAATATTATAGTTTTAACCTCCCAAAACTTGAAATTTTGTAATTTTGTATATGAAATAACTCTTTTATATATATATATATATATTAATATTATTTATGTCATGCATATAAGTTTTTTTTTTAGATTACAACAATTGGAGGTGGGGGGAGACTCGAACCTATGACCTTCAAGTCATTAGGTGTACACTGATGTCGCTTGAGCTATTGCTCTATTGGCTGTCATGCATATAAGTTAGTGACCCTAAAATTATTTATTATTTTTTATATAAAAGAGTGGATACCACGCATAATTTAATAATATGCATCACATGCATTAAACGGCGATCCTAAAAAACTTGATTCTTTTTAATATGAAACTAAACATCTCAAAATAATTCAAATCTAACTAGCAAAATAAATTTTTTGGATCCACTCATGCATATCAAGGGAACAATCACAAAGTACAAAGATTAAATTAGTATCGTAATCTAAATTTTATGTTATTTTTCTACCATTAATACATATTTTATTTTGGTTTTTTTTTAATGTATATGACTGATGGGAAGAAAGTGAAAGGTTGTGTGAACTCGTGTTCCCAACGATGTACCAACACTATGAACTAA GAGAAAATGAAGTCATTTGTGGTTCTTTGTTTGGTTCTAAGCTTAGTGGTAAGTAAGTCCACATCCCAAGAACTTTCTTCCAATGATTGTTATCTTAACTGCATAACGGGTGTCTGCGCCATCGAAGGTTTATTCAGTTGTGGAATGTGCATAGTCAATTGTGTTTTGACACCGAATGATCTTTCACCAATGGAATTGCGCCACATGGATAACGGTTACTTTTGCAAGCTTGGTTGTTCCGTTTCTCGATGCACCAACCTCCGCACTAACAATCACCCAGTGAAAGGTTGTGTGAACTCGTGTTCCCAACGATGTACCAACACTATGAACTAA ATGAAGTCATTTGTGGTTCTTTGTTTGGTTCTAAGCTTAGTGGTAAGTAAGTCCACATCCCAAGAACTTTCTTCCAATGATTGTTATCTTAACTGCATAACGGGTGTCTGCGCCATCGAAGGTTTATTCAGTTGTGGAATGTGCATAGTCAATTGTGTTTTGACACCGAATGATCTTTCACCAATGGAATTGCGCCACATGGATAACGGTTACTTTTGCAAGCTTGGTTGTTCCGTTTCTCGATGCACCAACCTCCGCACTAACAATCACCCAGTGAAAGGTTGTGTGAACTCGTGTTCCCAACGATGTACCAACACTATGAACTAA MKSFVVLCLVLSLVVSKSTSQELSSNDCYLNCITGVCAIEGLFSCGMCIVNCVLTPNDLSPMELRHMDNGYFCKLGCSVSRCTNLRTNNHPVKGCVNSCSQRCTNTMN Homology
BLAST of Sed0015260 vs. NCBI nr
Match: KAG7014099.1 (hypothetical protein SDJN02_24272, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 98.2 bits (243), Expect = 4.6e-17 Identity = 54/114 (47.37%), Postives = 69/114 (60.53%), Query Frame = 0
BLAST of Sed0015260 vs. NCBI nr
Match: KAG6575553.1 (Thionin-like protein 2, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 97.4 bits (241), Expect = 7.8e-17 Identity = 54/114 (47.37%), Postives = 68/114 (59.65%), Query Frame = 0
BLAST of Sed0015260 vs. NCBI nr
Match: KAG6575558.1 (hypothetical protein SDJN03_26197, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 88.2 bits (217), Expect = 4.7e-14 Identity = 44/86 (51.16%), Postives = 53/86 (61.63%), Query Frame = 0
BLAST of Sed0015260 vs. NCBI nr
Match: XP_038897055.1 (thionin-like protein 2 [Benincasa hispida]) HSP 1 Score: 82.0 bits (201), Expect = 3.4e-12 Identity = 50/112 (44.64%), Postives = 64/112 (57.14%), Query Frame = 0
BLAST of Sed0015260 vs. NCBI nr
Match: XP_008461038.1 (PREDICTED: beta-hordothionin-like [Cucumis melo]) HSP 1 Score: 80.9 bits (198), Expect = 7.6e-12 Identity = 50/128 (39.06%), Postives = 69/128 (53.91%), Query Frame = 0
BLAST of Sed0015260 vs. ExPASy Swiss-Prot
Match: A8MRP4 (Thionin-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=At1g12663 PE=3 SV=1) HSP 1 Score: 50.8 bits (120), Expect = 1.1e-05 Identity = 30/108 (27.78%), Postives = 54/108 (50.00%), Query Frame = 0
BLAST of Sed0015260 vs. ExPASy TrEMBL
Match: A0A1S3CDB8 (beta-hordothionin-like OS=Cucumis melo OX=3656 GN=LOC103499744 PE=4 SV=1) HSP 1 Score: 80.9 bits (198), Expect = 3.7e-12 Identity = 50/128 (39.06%), Postives = 69/128 (53.91%), Query Frame = 0
BLAST of Sed0015260 vs. ExPASy TrEMBL
Match: A0A6J1KDK0 (thionin-like protein 2 OS=Cucurbita maxima OX=3661 GN=LOC111494667 PE=4 SV=1) HSP 1 Score: 80.1 bits (196), Expect = 6.2e-12 Identity = 48/111 (43.24%), Postives = 64/111 (57.66%), Query Frame = 0
BLAST of Sed0015260 vs. ExPASy TrEMBL
Match: A0A059AI82 (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_J03010 PE=4 SV=1) HSP 1 Score: 77.4 bits (189), Expect = 4.0e-11 Identity = 49/113 (43.36%), Postives = 68/113 (60.18%), Query Frame = 0
BLAST of Sed0015260 vs. ExPASy TrEMBL
Match: M5XBV6 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_3G072800 PE=4 SV=1) HSP 1 Score: 73.6 bits (179), Expect = 5.8e-10 Identity = 45/108 (41.67%), Postives = 64/108 (59.26%), Query Frame = 0
BLAST of Sed0015260 vs. ExPASy TrEMBL
Match: A0A5E4GD16 (PREDICTED: thionin OS=Prunus dulcis OX=3755 GN=ALMOND_2B025793 PE=4 SV=1) HSP 1 Score: 73.6 bits (179), Expect = 5.8e-10 Identity = 45/108 (41.67%), Postives = 64/108 (59.26%), Query Frame = 0
BLAST of Sed0015260 vs. TAIR 10
Match: AT1G12663.1 (Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant thionin (PR-13) family with the following members: At1g66100, At5g36910, At1g72260, At2g15010, At1g12663, At1g12660. ) HSP 1 Score: 50.8 bits (120), Expect = 7.8e-07 Identity = 30/108 (27.78%), Postives = 54/108 (50.00%), Query Frame = 0
BLAST of Sed0015260 vs. TAIR 10
Match: AT1G12672.2 (unknown protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G12663.1). ) HSP 1 Score: 48.9 bits (115), Expect = 3.0e-06 Identity = 27/69 (39.13%), Postives = 37/69 (53.62%), Query Frame = 0
BLAST of Sed0015260 vs. TAIR 10
Match: AT1G12672.1 (unknown protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G12663.1); Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 45.4 bits (106), Expect = 3.3e-05 Identity = 22/50 (44.00%), Postives = 30/50 (60.00%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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