Sed0015260 (gene) Chayote v1

Overview
NameSed0015260
Typegene
OrganismSechium edule (Chayote v1)
Descriptionthionin-like protein 2
LocationLG11: 28181324 .. 28182562 (+)
RNA-Seq ExpressionSed0015260
SyntenySed0015260
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GAGAAAATGAAGTCATTTGTGGTTCTTTGTTTGGTTCTAAGCTTAGTGGTAAGTAAGTCCACATCCCAAGAACTTTCTTCCAATGATTGTTATCTTAACTGCATAACGGGTGTCTGCGCCATCGAAGGTTTATTCAGTTGTGGAATGTGCATAGTCAATTGTGTTTTGACACCGAATGATCTTTCACCAATGGAATTGCGCCACATGGATAACGGTTACTTTTGCAAGCTTGGTTGTTCCGTTTCTCGATGCACCAACCTCCGCACTAACAATCACCCAGGTTCGTTAAATAGTATGAGATTTCATTTCATAATTATTTGGTGATGAGATGAGAACTCATCTATCTTTTAAATGTTAAAGGTCTCCTTCACATTTTTTAGGGATGTTTAATATATTCTCTCAAAATGGTGGCTCTTTTGAATTCAACAATTTTGAATTAGATCTCAATTTCATTTCTATTGGACCAAATACTCATTTCTCCGGCATATTCCTTTTATAAATTTTATAAATAGTGATATTTCTTGTATTGTATGTACCTTACATGCTATGTTATTTTGTATATGTGTAAGGTTACCTAGAGTCTTAAGGGACTAAGGAGTCATGATACTTTTTTTAATAGATGTATACCACCCAAATGTTAATATTATAGTTTTAACCTCCCAAAACTTGAAATTTTGTAATTTTGTATATGAAATAACTCTTTTATATATATATATATATATTAATATTATTTATGTCATGCATATAAGTTTTTTTTTTAGATTACAACAATTGGAGGTGGGGGGAGACTCGAACCTATGACCTTCAAGTCATTAGGTGTACACTGATGTCGCTTGAGCTATTGCTCTATTGGCTGTCATGCATATAAGTTAGTGACCCTAAAATTATTTATTATTTTTTATATAAAAGAGTGGATACCACGCATAATTTAATAATATGCATCACATGCATTAAACGGCGATCCTAAAAAACTTGATTCTTTTTAATATGAAACTAAACATCTCAAAATAATTCAAATCTAACTAGCAAAATAAATTTTTTGGATCCACTCATGCATATCAAGGGAACAATCACAAAGTACAAAGATTAAATTAGTATCGTAATCTAAATTTTATGTTATTTTTCTACCATTAATACATATTTTATTTTGGTTTTTTTTTAATGTATATGACTGATGGGAAGAAAGTGAAAGGTTGTGTGAACTCGTGTTCCCAACGATGTACCAACACTATGAACTAA

mRNA sequence

GAGAAAATGAAGTCATTTGTGGTTCTTTGTTTGGTTCTAAGCTTAGTGGTAAGTAAGTCCACATCCCAAGAACTTTCTTCCAATGATTGTTATCTTAACTGCATAACGGGTGTCTGCGCCATCGAAGGTTTATTCAGTTGTGGAATGTGCATAGTCAATTGTGTTTTGACACCGAATGATCTTTCACCAATGGAATTGCGCCACATGGATAACGGTTACTTTTGCAAGCTTGGTTGTTCCGTTTCTCGATGCACCAACCTCCGCACTAACAATCACCCAGTGAAAGGTTGTGTGAACTCGTGTTCCCAACGATGTACCAACACTATGAACTAA

Coding sequence (CDS)

ATGAAGTCATTTGTGGTTCTTTGTTTGGTTCTAAGCTTAGTGGTAAGTAAGTCCACATCCCAAGAACTTTCTTCCAATGATTGTTATCTTAACTGCATAACGGGTGTCTGCGCCATCGAAGGTTTATTCAGTTGTGGAATGTGCATAGTCAATTGTGTTTTGACACCGAATGATCTTTCACCAATGGAATTGCGCCACATGGATAACGGTTACTTTTGCAAGCTTGGTTGTTCCGTTTCTCGATGCACCAACCTCCGCACTAACAATCACCCAGTGAAAGGTTGTGTGAACTCGTGTTCCCAACGATGTACCAACACTATGAACTAA

Protein sequence

MKSFVVLCLVLSLVVSKSTSQELSSNDCYLNCITGVCAIEGLFSCGMCIVNCVLTPNDLSPMELRHMDNGYFCKLGCSVSRCTNLRTNNHPVKGCVNSCSQRCTNTMN
Homology
BLAST of Sed0015260 vs. NCBI nr
Match: KAG7014099.1 (hypothetical protein SDJN02_24272, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 98.2 bits (243), Expect = 4.6e-17
Identity = 54/114 (47.37%), Postives = 69/114 (60.53%), Query Frame = 0

Query: 1   MKSFVVLCLVLSLVV--SKSTSQELSSNDCYLNCITGVCAIEGLFSCGMCIVNCVLTPND 60
           MK+ +V CLVLS VV      ++ +   +CY  CI     +E  F C +CI  C+++  +
Sbjct: 115 MKTVLVACLVLSFVVVGISEPTEYVGGPNCYFGCINS--CLESAFQCAICIGKCMISV-E 174

Query: 61  LSPMELRHMDNGYFCKLGCSVSRCTNLRTNNHP----VKGCVNSCSQRCTNTMN 109
            +PM+  HMDN YFCKLGCS SRC  L   NHP    +KGCVNSCS  CTN MN
Sbjct: 175 STPMQANHMDNRYFCKLGCSTSRCAKLLL-NHPNEKQMKGCVNSCSHTCTNIMN 224

BLAST of Sed0015260 vs. NCBI nr
Match: KAG6575553.1 (Thionin-like protein 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 97.4 bits (241), Expect = 7.8e-17
Identity = 54/114 (47.37%), Postives = 68/114 (59.65%), Query Frame = 0

Query: 1   MKSFVVLCLVLSLVV--SKSTSQELSSNDCYLNCITGVCAIEGLFSCGMCIVNCVLTPND 60
           MK+ +V CLVLS VV      ++ +   +CY  CI      E  F C +CI  C+++  +
Sbjct: 1   MKTVLVACLVLSFVVVGISEPTEYVGGPNCYFGCINS--CFESAFQCAICIGKCMISV-E 60

Query: 61  LSPMELRHMDNGYFCKLGCSVSRCTNLRTNNHP----VKGCVNSCSQRCTNTMN 109
            +PM+  HMDN YFCKLGCS SRC  L   NHP    +KGCVNSCS  CTN MN
Sbjct: 61  STPMQANHMDNRYFCKLGCSTSRCAKLLL-NHPNEKQMKGCVNSCSHTCTNIMN 110

BLAST of Sed0015260 vs. NCBI nr
Match: KAG6575558.1 (hypothetical protein SDJN03_26197, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 88.2 bits (217), Expect = 4.7e-14
Identity = 44/86 (51.16%), Postives = 53/86 (61.63%), Query Frame = 0

Query: 27  DCYLNCITGVCAIEGLFSCGMCIVNCVLTPNDLSPMELRHMDNGYFCKLGCSVSRCTNLR 86
           +CY  CI      E  F C +CI  C+++  + +PM+  HMDN YFCKLGCS SRC  L 
Sbjct: 114 NCYFGCINS--CFESAFQCAICIGKCMISV-ESTPMQANHMDNRYFCKLGCSTSRCAKLL 173

Query: 87  TNNHP----VKGCVNSCSQRCTNTMN 109
             NHP    +KGCVNSCS  CTN MN
Sbjct: 174 L-NHPNEKQMKGCVNSCSHTCTNIMN 195

BLAST of Sed0015260 vs. NCBI nr
Match: XP_038897055.1 (thionin-like protein 2 [Benincasa hispida])

HSP 1 Score: 82.0 bits (201), Expect = 3.4e-12
Identity = 50/112 (44.64%), Postives = 64/112 (57.14%), Query Frame = 0

Query: 1   MKSFVVLCLVLSLVVSKSTSQELSSNDCYLNCITGVCA----IEGLFSC-GMCIVNCVLT 60
           MKS VV+CL++SLV  +ST+   +  DCY  C  G CA    I  L +C   C+  C + 
Sbjct: 1   MKSVVVICLIMSLVAERSTA---TFEDCYTKCF-GECASKTPIFLLQTCAAQCVAQCFIN 60

Query: 61  PNDLSPMELRHMDNGYFCKLGCSVSRCTNLRTNNHP----VKGCVNSCSQRC 104
           P   S M+  HMD  YFCKLGC+ S CTN  T   P    VK CV+SC ++C
Sbjct: 61  PP--STMDSNHMDTHYFCKLGCATSICTNFSTMGDPAGDKVKSCVDSCDKKC 106

BLAST of Sed0015260 vs. NCBI nr
Match: XP_008461038.1 (PREDICTED: beta-hordothionin-like [Cucumis melo])

HSP 1 Score: 80.9 bits (198), Expect = 7.6e-12
Identity = 50/128 (39.06%), Postives = 69/128 (53.91%), Query Frame = 0

Query: 1   MKSFVVLCLVLS-LVVSKS-------------TSQELSSNDCYLNCITGVCAIEGLFSCG 60
           MKS  VLCL+LS LVV KS                +  S+ CY++C+   C  +G+F C 
Sbjct: 1   MKSIFVLCLILSLLVVGKSEPENDVGSGSGSGNGNDNGSSGCYISCLLNDCR-KGVFQCA 60

Query: 61  MCIVNCVLTPNDLS-PMELRHMDNGYFCKLGCSVSRCT------NLRTNNHPVKGCVNSC 108
           +C+  C +   + S       MDN  FCK+GC+ S CT      N  ++   VKGCV+SC
Sbjct: 61  VCLGKCAVVGAESSYSSRSNRMDNHDFCKIGCTTSLCTKFALPNNQHSDEKEVKGCVSSC 120

BLAST of Sed0015260 vs. ExPASy Swiss-Prot
Match: A8MRP4 (Thionin-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=At1g12663 PE=3 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 1.1e-05
Identity = 30/108 (27.78%), Postives = 54/108 (50.00%), Query Frame = 0

Query: 5   VVLCLVLSLVVSKSTSQELSSNDCYLNCITGVCA---IEGLFSCGM-CIVNCVLTPNDLS 64
           V++ +V+  +++++ +Q++   +CY  C+    A         C   C   C+  P+  S
Sbjct: 5   VMIVMVIGNLLAQTAAQKIPFKECYPACLVECKAGSKFPKYLKCPFTCTKECLQQPSPPS 64

Query: 65  PMELRHMDNGYFCKLGCSVSRCTNLRTNNHP----VKGCVNSCSQRCT 105
                  ++ YFCKLGC+   C +L +  +P    V  CV+SCS +CT
Sbjct: 65  VSSNNIDESDYFCKLGCATYHCVSLSSIQNPNVERVSACVDSCSNKCT 112

BLAST of Sed0015260 vs. ExPASy TrEMBL
Match: A0A1S3CDB8 (beta-hordothionin-like OS=Cucumis melo OX=3656 GN=LOC103499744 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 3.7e-12
Identity = 50/128 (39.06%), Postives = 69/128 (53.91%), Query Frame = 0

Query: 1   MKSFVVLCLVLS-LVVSKS-------------TSQELSSNDCYLNCITGVCAIEGLFSCG 60
           MKS  VLCL+LS LVV KS                +  S+ CY++C+   C  +G+F C 
Sbjct: 1   MKSIFVLCLILSLLVVGKSEPENDVGSGSGSGNGNDNGSSGCYISCLLNDCR-KGVFQCA 60

Query: 61  MCIVNCVLTPNDLS-PMELRHMDNGYFCKLGCSVSRCT------NLRTNNHPVKGCVNSC 108
           +C+  C +   + S       MDN  FCK+GC+ S CT      N  ++   VKGCV+SC
Sbjct: 61  VCLGKCAVVGAESSYSSRSNRMDNHDFCKIGCTTSLCTKFALPNNQHSDEKEVKGCVSSC 120

BLAST of Sed0015260 vs. ExPASy TrEMBL
Match: A0A6J1KDK0 (thionin-like protein 2 OS=Cucurbita maxima OX=3661 GN=LOC111494667 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 6.2e-12
Identity = 48/111 (43.24%), Postives = 64/111 (57.66%), Query Frame = 0

Query: 1   MKSFVVLCLVLSLVVSKSTSQELSSNDCYLNCITGVCAIE---GLFSC-GMCIVNCVLTP 60
           MKS VV+C +LSLV  +ST+   S   CY  C   VCAI     + +C G C+ +C+   
Sbjct: 36  MKSVVVICFILSLVAGRSTA---SFGKCYAKCFI-VCAITPGVPIGTCGGKCLADCLFLA 95

Query: 61  NDLSPMELRHMDNGYFCKLGCSVSRCTNLRTNNHP----VKGCVNSCSQRC 104
           +  +P +L H+D  YFCKLGC+ S CT   T   P    V+ CVNSCS+ C
Sbjct: 96  S--APRDLNHLDTHYFCKLGCATSLCTKFSTKTDPAEKKVESCVNSCSRTC 140

BLAST of Sed0015260 vs. ExPASy TrEMBL
Match: A0A059AI82 (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_J03010 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 4.0e-11
Identity = 49/113 (43.36%), Postives = 68/113 (60.18%), Query Frame = 0

Query: 1   MKSFVVLCLVLSLVVSKSTSQELSSNDCYLNCITGVCAI---EGLFSCGM-CIVNCVLTP 60
           +KS  ++CLVL L + +S +   +  DCY  C   +CAI     LFSC + C+ +C++ P
Sbjct: 4   VKSVFMVCLVLGLFLGQSGA---NFQDCYPACFI-LCAITPGRTLFSCSVECLKDCIIPP 63

Query: 61  NDLSPMELRHMDNGYFCKLGCSVSRCTNLRTNNHP----VKGCVNSCSQRCTN 106
           +D     L   D  YFCKLGC+ S CTNL T ++P    V GCVNSCS+ CT+
Sbjct: 64  SD----SLSLRDTMYFCKLGCASSLCTNLSTKDNPREKRVAGCVNSCSKTCTD 108

BLAST of Sed0015260 vs. ExPASy TrEMBL
Match: M5XBV6 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_3G072800 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 5.8e-10
Identity = 45/108 (41.67%), Postives = 64/108 (59.26%), Query Frame = 0

Query: 5   VVLCLVLSLVVSKSTSQELSSNDCYLNCITGVCAI--EGLFSCGM-CIVNCVLTPNDLSP 64
           V++CLVL LV+ +ST+Q      CY  C  G+C +       CG+ C+  C+LTP    P
Sbjct: 10  VLVCLVLGLVMGQSTAQLFQL--CYGACF-GICIVNEHNPLKCGIRCLKKCILTP---EP 69

Query: 65  MELRHMDNGYFCKLGCSVSRCTNLRTNNHP----VKGCVNSCSQRCTN 106
            +    ++ +FCKLGC+ S CTN+ T ++P    VK CV+SCS  CTN
Sbjct: 70  SDGHQTNSLHFCKLGCATSLCTNISTKDNPNEEKVKNCVDSCSGTCTN 111

BLAST of Sed0015260 vs. ExPASy TrEMBL
Match: A0A5E4GD16 (PREDICTED: thionin OS=Prunus dulcis OX=3755 GN=ALMOND_2B025793 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 5.8e-10
Identity = 45/108 (41.67%), Postives = 64/108 (59.26%), Query Frame = 0

Query: 5   VVLCLVLSLVVSKSTSQELSSNDCYLNCITGVCAI--EGLFSCGM-CIVNCVLTPNDLSP 64
           V++CLVL LV+ +ST+Q      CY  C  G+C +       CG+ C+  C+LTP    P
Sbjct: 10  VLVCLVLGLVMGQSTAQLFQL--CYGACF-GICIVNDHNPLKCGIRCLKKCILTP---EP 69

Query: 65  MELRHMDNGYFCKLGCSVSRCTNLRTNNHP----VKGCVNSCSQRCTN 106
            +    ++ +FCKLGC+ S CTN+ T ++P    VK CV+SCS  CTN
Sbjct: 70  SDGHQTNSLHFCKLGCATSLCTNISTKDNPNEEKVKNCVDSCSGTCTN 111

BLAST of Sed0015260 vs. TAIR 10
Match: AT1G12663.1 (Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant thionin (PR-13) family with the following members: At1g66100, At5g36910, At1g72260, At2g15010, At1g12663, At1g12660. )

HSP 1 Score: 50.8 bits (120), Expect = 7.8e-07
Identity = 30/108 (27.78%), Postives = 54/108 (50.00%), Query Frame = 0

Query: 5   VVLCLVLSLVVSKSTSQELSSNDCYLNCITGVCA---IEGLFSCGM-CIVNCVLTPNDLS 64
           V++ +V+  +++++ +Q++   +CY  C+    A         C   C   C+  P+  S
Sbjct: 5   VMIVMVIGNLLAQTAAQKIPFKECYPACLVECKAGSKFPKYLKCPFTCTKECLQQPSPPS 64

Query: 65  PMELRHMDNGYFCKLGCSVSRCTNLRTNNHP----VKGCVNSCSQRCT 105
                  ++ YFCKLGC+   C +L +  +P    V  CV+SCS +CT
Sbjct: 65  VSSNNIDESDYFCKLGCATYHCVSLSSIQNPNVERVSACVDSCSNKCT 112

BLAST of Sed0015260 vs. TAIR 10
Match: AT1G12672.2 (unknown protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G12663.1). )

HSP 1 Score: 48.9 bits (115), Expect = 3.0e-06
Identity = 27/69 (39.13%), Postives = 37/69 (53.62%), Query Frame = 0

Query: 43  FSCGMCIVNCVLTPNDL--SPMELRHMDNGYFCKLGCSVSRCTNLRTNNHP----VKGCV 102
           F    CI  C+  P+    S  E+ H  N Y+CKLGCS   C +L +  +P    V  CV
Sbjct: 36  FKTFSCIKTCLEPPSSQMDSTNEINH--NDYYCKLGCSTHHCASLSSIQNPNVDKVVDCV 95

Query: 103 NSCSQRCTN 106
           +SCS +C+N
Sbjct: 96  DSCSDKCSN 102

BLAST of Sed0015260 vs. TAIR 10
Match: AT1G12672.1 (unknown protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G12663.1); Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 45.4 bits (106), Expect = 3.3e-05
Identity = 22/50 (44.00%), Postives = 30/50 (60.00%), Query Frame = 0

Query: 60  SPMELRHMDNGYFCKLGCSVSRCTNLRTNNHP----VKGCVNSCSQRCTN 106
           S  E+ H  N Y+CKLGCS   C +L +  +P    V  CV+SCS +C+N
Sbjct: 17  STNEINH--NDYYCKLGCSTHHCASLSSIQNPNVDKVVDCVDSCSDKCSN 64

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7014099.14.6e-1747.37hypothetical protein SDJN02_24272, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6575553.17.8e-1747.37Thionin-like protein 2, partial [Cucurbita argyrosperma subsp. sororia][more]
KAG6575558.14.7e-1451.16hypothetical protein SDJN03_26197, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_038897055.13.4e-1244.64thionin-like protein 2 [Benincasa hispida][more]
XP_008461038.17.6e-1239.06PREDICTED: beta-hordothionin-like [Cucumis melo][more]
Match NameE-valueIdentityDescription
A8MRP41.1e-0527.78Thionin-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=At1g12663 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
A0A1S3CDB83.7e-1239.06beta-hordothionin-like OS=Cucumis melo OX=3656 GN=LOC103499744 PE=4 SV=1[more]
A0A6J1KDK06.2e-1243.24thionin-like protein 2 OS=Cucurbita maxima OX=3661 GN=LOC111494667 PE=4 SV=1[more]
A0A059AI824.0e-1143.36Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_J03010 PE=4 SV... [more]
M5XBV65.8e-1041.67Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_3G072800 PE=4 SV=1[more]
A0A5E4GD165.8e-1041.67PREDICTED: thionin OS=Prunus dulcis OX=3755 GN=ALMOND_2B025793 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT1G12663.17.8e-0727.78Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant t... [more]
AT1G12672.23.0e-0639.13unknown protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana prot... [more]
AT1G12672.13.3e-0544.00unknown protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana prot... [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR038975Thionin-like proteinPANTHERPTHR36312THIONIN-LIKE PROTEIN 1coord: 2..106
NoneNo IPR availablePANTHERPTHR36312:SF1THIONIN-LIKE PROTEIN 1coord: 2..106

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0015260.1Sed0015260.1mRNA