Sed0015245 (gene) Chayote v1

Overview


Name	Sed0015245
Type	gene
Organism	Sechium edule (Chayote v1)
Description	protein BRICK 1
Location	LG10: 5772397 .. 5773338 (-)
RNA-Seq Expression	Sed0015245
Synteny	Sed0015245

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAGGGCTGGAGGAATCACCAACGCCGTAAACGTAGGGATAGCGGTTCAAGCCGACTGGGAGAATCGCGAGTTCATCTCCCATATTTCCATCAATATCCGCCGTCTCTTCGATTTTCTCGTCCATTTTGGTAGTCATCTCCGTTTTTCTCTGTGTTCTTTTGTTTTCGCTTTGATCTATCTCTCAGTCCACTGTTAGGTCTTTTTATCTCGTATTTGAACTTCATGTTCTTAGAAATTTCCTAATATGGCTGTGTGTTTTGTTTGATTTGTTCGAATTAATTGCCTTTTAGAACCGATACACGACTCATAGTCTGATTCTGCAACTTTTGATACCTGCCTTTTGAGATTGAGAATCGAATCCCATTGTTATGAAAATGAAACAACAATCAAAAGAAAAGGGAGCGAAAACACACAAAATTGCTCGGTTCACTAACAGTTTTCTTAAGTAGATAACAAATTACATAATGTCGATCAACTAAGTAATATAGACCCCAGCTTGCTAGACCTCGACTAAGTAATCGTGGAACATCAATTAGTTAAAGCATATATCAACACCCATGTTCTTTTTTATTGTTTTAATGAAGTGAATTGTTCTTTTCTTTTTCGCTTGCTCTTGATTTCTATGAATGTTGCCGGAAATTGATTGGCTGAGCACTAACATGCCCTACGAGTTTTCAACCTCCGGCTATGGTTTTCCGATTAAAATTTATAGACTAATAACTTCCAATTTTGAAGTCAGTGTTGCTGTATTTTACTCAATTGGTTGCTAAGAAAAATATCCAGGTTTCTAACTCATTTTCTTGTTCCATCAGAGGCAACAACAAAGAGCAAGTTGGCATCTTTGAACGAGAAGCTTGATACGCTGGAGCGGCGCCTTGAAACGCTTGAAGTCCAAGTCAGTACTGCATCTGCTAACCCATCTCTCTTTACTACTTAA

mRNA sequence

ATGGCGAGGGCTGGAGGAATCACCAACGCCGTAAACGTAGGGATAGCGGTTCAAGCCGACTGGGAGAATCGCGAGTTCATCTCCCATATTTCCATCAATATCCGCCGTCTCTTCGATTTTCTCGTCCATTTTGAGGCAACAACAAAGAGCAAGTTGGCATCTTTGAACGAGAAGCTTGATACGCTGGAGCGGCGCCTTGAAACGCTTGAAGTCCAAGTCAGTACTGCATCTGCTAACCCATCTCTCTTTACTACTTAA

Coding sequence (CDS)

ATGGCGAGGGCTGGAGGAATCACCAACGCCGTAAACGTAGGGATAGCGGTTCAAGCCGACTGGGAGAATCGCGAGTTCATCTCCCATATTTCCATCAATATCCGCCGTCTCTTCGATTTTCTCGTCCATTTTGAGGCAACAACAAAGAGCAAGTTGGCATCTTTGAACGAGAAGCTTGATACGCTGGAGCGGCGCCTTGAAACGCTTGAAGTCCAAGTCAGTACTGCATCTGCTAACCCATCTCTCTTTACTACTTAA

Protein sequence

MARAGGITNAVNVGIAVQADWENREFISHISINIRRLFDFLVHFEATTKSKLASLNEKLDTLERRLETLEVQVSTASANPSLFTT

Homology

[Close]

BLAST of Sed0015245 vs. NCBI nr
Match: XP_022963287.1 (protein BRICK 1 [Cucurbita moschata] >XP_023003607.1 protein BRICK 1 [Cucurbita maxima] >XP_023518559.1 protein BRICK 1 [Cucurbita pepo subsp. pepo] >KAG6594917.1 Protein BRICK 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 161.0 bits (406), Expect = 4.5e-36
Identity = 84/85 (98.82%), Postives = 84/85 (98.82%), Query Frame = 0


Query: 1  MARAGGITNAVNVGIAVQADWENREFISHISINIRRLFDFLVHFEATTKSKLASLNEKLD 60
          MARAGGITNAVNVGIAVQADWENREFISHISINIRRLFDFLVHFEATTKSKLASLNEKLD
Sbjct: 1  MARAGGITNAVNVGIAVQADWENREFISHISINIRRLFDFLVHFEATTKSKLASLNEKLD 60

Query: 61 TLERRLETLEVQVSTASANPSLFTT 86
          TLERRLE LEVQVSTASANPSLFTT
Sbjct: 61 TLERRLEMLEVQVSTASANPSLFTT 85

[Close]

BLAST of Sed0015245 vs. NCBI nr
Match: XP_022132950.1 (protein BRICK 1 [Momordica charantia])

HSP 1 Score: 160.6 bits (405), Expect = 5.9e-36
Identity = 83/85 (97.65%), Postives = 84/85 (98.82%), Query Frame = 0


Query: 1  MARAGGITNAVNVGIAVQADWENREFISHISINIRRLFDFLVHFEATTKSKLASLNEKLD 60
          MARAGGITNAVNVGIAVQADWENREFISHISIN+RRLFDFLVHFEATTKSKLASLNEKLD
Sbjct: 1  MARAGGITNAVNVGIAVQADWENREFISHISINVRRLFDFLVHFEATTKSKLASLNEKLD 60

Query: 61 TLERRLETLEVQVSTASANPSLFTT 86
          TLERRLE LEVQVSTASANPSLFTT
Sbjct: 61 TLERRLEMLEVQVSTASANPSLFTT 85

[Close]

BLAST of Sed0015245 vs. NCBI nr
Match: XP_004143434.1 (protein BRICK 1 isoform X6 [Cucumis sativus] >XP_008440511.1 PREDICTED: protein BRICK 1 [Cucumis melo])

HSP 1 Score: 157.5 bits (397), Expect = 5.0e-35
Identity = 82/85 (96.47%), Postives = 83/85 (97.65%), Query Frame = 0


Query: 1  MARAGGITNAVNVGIAVQADWENREFISHISINIRRLFDFLVHFEATTKSKLASLNEKLD 60
          MARAGGITNAVNVGIAVQADWENREFISHISIN+RRLFDFLVHFEATTKSKLASLNEKLD
Sbjct: 1  MARAGGITNAVNVGIAVQADWENREFISHISINVRRLFDFLVHFEATTKSKLASLNEKLD 60

Query: 61 TLERRLETLEVQVSTASANPSLFTT 86
          TLERRLE LEVQVSTASAN SLFTT
Sbjct: 61 TLERRLEMLEVQVSTASANSSLFTT 85

[Close]

BLAST of Sed0015245 vs. NCBI nr
Match: XP_038883736.1 (protein BRICK 1 [Benincasa hispida])

HSP 1 Score: 156.0 bits (393), Expect = 1.5e-34
Identity = 81/85 (95.29%), Postives = 83/85 (97.65%), Query Frame = 0


Query: 1   MARAGGITNAVNVGIAVQADWENREFISHISINIRRLFDFLVHFEATTKSKLASLNEKLD 60
           MARAGGITNAVNVGIAVQADWENREFISHISIN+RRLFDFLVHFEATTKSKLASLNEKLD
Sbjct: 34  MARAGGITNAVNVGIAVQADWENREFISHISINVRRLFDFLVHFEATTKSKLASLNEKLD 93

Query: 61  TLERRLETLEVQVSTASANPSLFTT 86
           TLERRLE LEVQVSTASAN SLFT+
Sbjct: 94  TLERRLEMLEVQVSTASANSSLFTS 118

[Close]

BLAST of Sed0015245 vs. NCBI nr
Match: PON97096.1 (Matrilin, coiled-coil trimerization domain containing protein [Trema orientale])

HSP 1 Score: 153.7 bits (387), Expect = 7.2e-34
Identity = 79/84 (94.05%), Postives = 81/84 (96.43%), Query Frame = 0


Query: 1  MARAGGITNAVNVGIAVQADWENREFISHISINIRRLFDFLVHFEATTKSKLASLNEKLD 60
          MARAGGITNAVNVGIAVQADWENREFISHIS+N+RRLFDFLV FEATTKSKLASLNEKLD
Sbjct: 1  MARAGGITNAVNVGIAVQADWENREFISHISLNVRRLFDFLVQFEATTKSKLASLNEKLD 60

Query: 61 TLERRLETLEVQVSTASANPSLFT 85
          TLERRLE LEVQV TASANPSLFT
Sbjct: 61 TLERRLELLEVQVGTASANPSLFT 84

[Close]

BLAST of Sed0015245 vs. ExPASy Swiss-Prot
Match: Q94JY4 (Protein BRICK 1 OS=Arabidopsis thaliana OX=3702 GN=BRK1 PE=1 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 6.8e-35
Identity = 75/85 (88.24%), Postives = 81/85 (95.29%), Query Frame = 0


Query: 1  MARAGGITNAVNVGIAVQADWENREFISHISINIRRLFDFLVHFEATTKSKLASLNEKLD 60
          MA+AGGITNAVNVGIAVQADWENREFISHIS+N+RRLF+FLV FE+TTKSKLASLNEKLD
Sbjct: 1  MAKAGGITNAVNVGIAVQADWENREFISHISLNVRRLFEFLVQFESTTKSKLASLNEKLD 60

Query: 61 TLERRLETLEVQVSTASANPSLFTT 86
           LERRLE LEVQVSTA+ANPSLF T
Sbjct: 61 LLERRLEMLEVQVSTATANPSLFAT 85

[Close]

BLAST of Sed0015245 vs. ExPASy Swiss-Prot
Match: Q8RW98 (Protein BRICK1 OS=Zea mays OX=4577 GN=BRK1 PE=2 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 6.6e-30
Identity = 65/83 (78.31%), Postives = 74/83 (89.16%), Query Frame = 0


Query: 1  MARAGGITNAVNVGIAVQADWENREFISHISINIRRLFDFLVHFEATTKSKLASLNEKLD 60
          M R GG+ N VNVGIAVQADWENREFIS+IS+N+RRLFDFL+ FEATTKSKLASLNEKLD
Sbjct: 1  MGRGGGMGNPVNVGIAVQADWENREFISNISLNVRRLFDFLLRFEATTKSKLASLNEKLD 60

Query: 61 TLERRLETLEVQVSTASANPSLF 84
           LER+LE LEVQV +A+ NPS+F
Sbjct: 61 ILERKLEVLEVQVGSATTNPSVF 83

[Close]

BLAST of Sed0015245 vs. ExPASy Swiss-Prot
Match: Q84VA7 (Probable protein BRICK1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0829900 PE=3 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 8.6e-30
Identity = 68/85 (80.00%), Postives = 77/85 (90.59%), Query Frame = 0


Query: 1  MARAG--GITNAVNVGIAVQADWENREFISHISINIRRLFDFLVHFEATTKSKLASLNEK 60
          MARAG  G+ N VNVGIAVQADWENREFIS+IS+N+RRLFDFL+ FEATTKSKLASLNEK
Sbjct: 1  MARAGGHGMGNPVNVGIAVQADWENREFISNISLNVRRLFDFLLRFEATTKSKLASLNEK 60

Query: 61 LDTLERRLETLEVQVSTASANPSLF 84
          LD LER+LE LEVQVS+A+ NPS+F
Sbjct: 61 LDILERKLEVLEVQVSSATTNPSVF 85

[Close]

BLAST of Sed0015245 vs. ExPASy Swiss-Prot
Match: Q54X65 (Protein BRICK1 OS=Dictyostelium discoideum OX=44689 GN=brk1 PE=1 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 2.2e-09
Identity = 29/59 (49.15%), Postives = 43/59 (72.88%), Query Frame = 0


Query: 17 VQADWENREFISHISINIRRLFDFLVHFEATTKSKLASLNEKLDTLERRLETLEVQVST 76
          +Q DWE REFI  +SINI+++ +FL  FE +T++KL+ LNEKL  L+R+++ LE    T
Sbjct: 7  IQKDWEQREFIEDMSINIQKIVEFLNKFELSTRNKLSDLNEKLTILDRQVDYLEATFKT 65

[Close]

BLAST of Sed0015245 vs. ExPASy Swiss-Prot
Match: A2BD66 (Probable protein BRICK1-B OS=Xenopus laevis OX=8355 GN=brk1-b PE=3 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 4.9e-09
Identity = 28/58 (48.28%), Postives = 44/58 (75.86%), Query Frame = 0


Query: 17 VQADWENREFISHISINIRRLFDFLVHFEATTKSKLASLNEKLDTLERRLETLEVQVS 75
          +  DW NRE+I  I+ +I+++ DFL  F+ + +S+LA+LNEKL TLERR+E +E +V+
Sbjct: 12 IHQDWANREYIEVITSSIKKIADFLNSFDMSCRSRLATLNEKLTTLERRIEYIEARVT 69

[Close]

BLAST of Sed0015245 vs. ExPASy TrEMBL
Match: A0A6J1KN25 (protein BRICK 1 OS=Cucurbita maxima OX=3661 GN=LOC111497156 PE=3 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 2.2e-36
Identity = 84/85 (98.82%), Postives = 84/85 (98.82%), Query Frame = 0


Query: 1  MARAGGITNAVNVGIAVQADWENREFISHISINIRRLFDFLVHFEATTKSKLASLNEKLD 60
          MARAGGITNAVNVGIAVQADWENREFISHISINIRRLFDFLVHFEATTKSKLASLNEKLD
Sbjct: 1  MARAGGITNAVNVGIAVQADWENREFISHISINIRRLFDFLVHFEATTKSKLASLNEKLD 60

Query: 61 TLERRLETLEVQVSTASANPSLFTT 86
          TLERRLE LEVQVSTASANPSLFTT
Sbjct: 61 TLERRLEMLEVQVSTASANPSLFTT 85

[Close]

BLAST of Sed0015245 vs. ExPASy TrEMBL
Match: A0A6J1HEV8 (protein BRICK 1 OS=Cucurbita moschata OX=3662 GN=LOC111463546 PE=3 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 2.2e-36
Identity = 84/85 (98.82%), Postives = 84/85 (98.82%), Query Frame = 0


Query: 1  MARAGGITNAVNVGIAVQADWENREFISHISINIRRLFDFLVHFEATTKSKLASLNEKLD 60
          MARAGGITNAVNVGIAVQADWENREFISHISINIRRLFDFLVHFEATTKSKLASLNEKLD
Sbjct: 1  MARAGGITNAVNVGIAVQADWENREFISHISINIRRLFDFLVHFEATTKSKLASLNEKLD 60

Query: 61 TLERRLETLEVQVSTASANPSLFTT 86
          TLERRLE LEVQVSTASANPSLFTT
Sbjct: 61 TLERRLEMLEVQVSTASANPSLFTT 85

[Close]

BLAST of Sed0015245 vs. ExPASy TrEMBL
Match: A0A6J1BTZ0 (protein BRICK 1 OS=Momordica charantia OX=3673 GN=LOC111005668 PE=3 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 2.9e-36
Identity = 83/85 (97.65%), Postives = 84/85 (98.82%), Query Frame = 0


Query: 1  MARAGGITNAVNVGIAVQADWENREFISHISINIRRLFDFLVHFEATTKSKLASLNEKLD 60
          MARAGGITNAVNVGIAVQADWENREFISHISIN+RRLFDFLVHFEATTKSKLASLNEKLD
Sbjct: 1  MARAGGITNAVNVGIAVQADWENREFISHISINVRRLFDFLVHFEATTKSKLASLNEKLD 60

Query: 61 TLERRLETLEVQVSTASANPSLFTT 86
          TLERRLE LEVQVSTASANPSLFTT
Sbjct: 61 TLERRLEMLEVQVSTASANPSLFTT 85

[Close]

BLAST of Sed0015245 vs. ExPASy TrEMBL
Match: A0A0A0KG45 (Protein BRICK1 OS=Cucumis sativus OX=3659 GN=Csa_6G497300 PE=3 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 2.4e-35
Identity = 82/85 (96.47%), Postives = 83/85 (97.65%), Query Frame = 0


Query: 1  MARAGGITNAVNVGIAVQADWENREFISHISINIRRLFDFLVHFEATTKSKLASLNEKLD 60
          MARAGGITNAVNVGIAVQADWENREFISHISIN+RRLFDFLVHFEATTKSKLASLNEKLD
Sbjct: 1  MARAGGITNAVNVGIAVQADWENREFISHISINVRRLFDFLVHFEATTKSKLASLNEKLD 60

Query: 61 TLERRLETLEVQVSTASANPSLFTT 86
          TLERRLE LEVQVSTASAN SLFTT
Sbjct: 61 TLERRLEMLEVQVSTASANSSLFTT 85

[Close]

BLAST of Sed0015245 vs. ExPASy TrEMBL
Match: A0A1S3B198 (protein BRICK 1 OS=Cucumis melo OX=3656 GN=LOC103484915 PE=3 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 2.4e-35
Identity = 82/85 (96.47%), Postives = 83/85 (97.65%), Query Frame = 0


Query: 1  MARAGGITNAVNVGIAVQADWENREFISHISINIRRLFDFLVHFEATTKSKLASLNEKLD 60
          MARAGGITNAVNVGIAVQADWENREFISHISIN+RRLFDFLVHFEATTKSKLASLNEKLD
Sbjct: 1  MARAGGITNAVNVGIAVQADWENREFISHISINVRRLFDFLVHFEATTKSKLASLNEKLD 60

Query: 61 TLERRLETLEVQVSTASANPSLFTT 86
          TLERRLE LEVQVSTASAN SLFTT
Sbjct: 61 TLERRLEMLEVQVSTASANSSLFTT 85

[Close]

BLAST of Sed0015245 vs. TAIR 10
Match: AT2G22640.1 (BRICK1, putative )

HSP 1 Score: 147.5 bits (371), Expect = 4.8e-36
Identity = 75/85 (88.24%), Postives = 81/85 (95.29%), Query Frame = 0


Query: 1  MARAGGITNAVNVGIAVQADWENREFISHISINIRRLFDFLVHFEATTKSKLASLNEKLD 60
          MA+AGGITNAVNVGIAVQADWENREFISHIS+N+RRLF+FLV FE+TTKSKLASLNEKLD
Sbjct: 1  MAKAGGITNAVNVGIAVQADWENREFISHISLNVRRLFEFLVQFESTTKSKLASLNEKLD 60

Query: 61 TLERRLETLEVQVSTASANPSLFTT 86
           LERRLE LEVQVSTA+ANPSLF T
Sbjct: 61 LLERRLEMLEVQVSTATANPSLFAT 85

The following BLAST results are available for this feature:

BLAST of Sed0015245 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022963287.1	4.5e-36	98.82	protein BRICK 1 [Cucurbita moschata] >XP_023003607.1 protein BRICK 1 [Cucurbita ...	[more]
XP_022132950.1	5.9e-36	97.65	protein BRICK 1 [Momordica charantia]	[more]
XP_004143434.1	5.0e-35	96.47	protein BRICK 1 isoform X6 [Cucumis sativus] >XP_008440511.1 PREDICTED: protein ...	[more]
XP_038883736.1	1.5e-34	95.29	protein BRICK 1 [Benincasa hispida]	[more]
PON97096.1	7.2e-34	94.05	Matrilin, coiled-coil trimerization domain containing protein [Trema orientale]	[more]

BLAST of Sed0015245 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94JY4	6.8e-35	88.24	Protein BRICK 1 OS=Arabidopsis thaliana OX=3702 GN=BRK1 PE=1 SV=1	[more]
Q8RW98	6.6e-30	78.31	Protein BRICK1 OS=Zea mays OX=4577 GN=BRK1 PE=2 SV=1	[more]
Q84VA7	8.6e-30	80.00	Probable protein BRICK1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0829900...	[more]
Q54X65	2.2e-09	49.15	Protein BRICK1 OS=Dictyostelium discoideum OX=44689 GN=brk1 PE=1 SV=1	[more]
A2BD66	4.9e-09	48.28	Probable protein BRICK1-B OS=Xenopus laevis OX=8355 GN=brk1-b PE=3 SV=1	[more]

BLAST of Sed0015245 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KN25	2.2e-36	98.82	protein BRICK 1 OS=Cucurbita maxima OX=3661 GN=LOC111497156 PE=3 SV=1	[more]
A0A6J1HEV8	2.2e-36	98.82	protein BRICK 1 OS=Cucurbita moschata OX=3662 GN=LOC111463546 PE=3 SV=1	[more]
A0A6J1BTZ0	2.9e-36	97.65	protein BRICK 1 OS=Momordica charantia OX=3673 GN=LOC111005668 PE=3 SV=1	[more]
A0A0A0KG45	2.4e-35	96.47	Protein BRICK1 OS=Cucumis sativus OX=3659 GN=Csa_6G497300 PE=3 SV=1	[more]
A0A1S3B198	2.4e-35	96.47	protein BRICK 1 OS=Cucumis melo OX=3656 GN=LOC103484915 PE=3 SV=1	[more]

BLAST of Sed0015245 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G22640.1	4.8e-36	88.24	BRICK1, putative	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 45..79
None	No IPR available	GENE3D	1.20.5.110		coord: 6..72 e-value: 5.9E-26 score: 91.8
IPR033378	Protein BRICK1	PANTHER	PTHR33668	PROTEIN BRICK1	coord: 1..76

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0015245.1	Sed0015245.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048870	cell motility
biological_process	GO:0008064	regulation of actin polymerization or depolymerization
biological_process	GO:0007015	actin filament organization
cellular_component	GO:0005856	cytoskeleton
cellular_component	GO:0031209	SCAR complex
molecular_function	GO:0044877	protein-containing complex binding