Sed0015169 (gene) Chayote v1

Overview


Name	Sed0015169
Type	gene
Organism	Sechium edule (Chayote v1)
Description	RING-type domain-containing protein
Location	LG06: 40363043 .. 40363645 (-)
RNA-Seq Expression	Sed0015169
Synteny	Sed0015169

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGTGTTTACACTCTCGTTCAAGTGCCGAATCGAGAGCGGCAGCAGCGCAGCTTCGGACGAGCTACGGAAAGAAGAGATGATACTCCGATTGCAAAGTTTGAGCCTTCTGGTCCCAGGACATCGGTTGGGCGATTTCCTACAGCAAATCCTCAAAGAAATTGCATTATGGGCAGATGAGGCAACTATTCAAGTGGCTACAGACGTGTTCCCTCTCACTCTACACGCGGATCCCGCGACATACGAGTACCACCTCGAGCAGTTTCTTTCCGGGCACGGCATATCCATGGCCGCCACCAAGATGATCTTTGACGGGATCCTGGTGTACGTGAGCGAACCTGAGAGAGAGAGGAAACTATACATCACGGTGAATGTGGACCACATCGAACTGAATTCGACGTCGACGCTCGAGATGAAAGGAGAAGAAGTTCAAGATCTTCCAGAGGATGAAATTTGTAGTATCTGTTTGGATGAACTGAGAGGCGGGAAAATGGAGGAGGTTGAGGTTGCTTGCGGGCATGCGTATCATGATTTGTGTATCTATAATTGGTTGGCCAATAACACTACATGCCCTTTGTGCCGAGCCTTTTTGGACTTCTAA

mRNA sequence

ATGGCTGTGTTTACACTCTCGTTCAAGTGCCGAATCGAGAGCGGCAGCAGCGCAGCTTCGGACGAGCTACGGAAAGAAGAGATGATACTCCGATTGCAAAGTTTGAGCCTTCTGGTCCCAGGACATCGGTTGGGCGATTTCCTACAGCAAATCCTCAAAGAAATTGCATTATGGGCAGATGAGGCAACTATTCAAGTGGCTACAGACGTGTTCCCTCTCACTCTACACGCGGATCCCGCGACATACGAGTACCACCTCGAGCAGTTTCTTTCCGGGCACGGCATATCCATGGCCGCCACCAAGATGATCTTTGACGGGATCCTGGTGTACGTGAGCGAACCTGAGAGAGAGAGGAAACTATACATCACGGTGAATGTGGACCACATCGAACTGAATTCGACGTCGACGCTCGAGATGAAAGGAGAAGAAGTTCAAGATCTTCCAGAGGATGAAATTTGTAGTATCTGTTTGGATGAACTGAGAGGCGGGAAAATGGAGGAGGTTGAGGTTGCTTGCGGGCATGCGTATCATGATTTGTGTATCTATAATTGGTTGGCCAATAACACTACATGCCCTTTGTGCCGAGCCTTTTTGGACTTCTAA

Coding sequence (CDS)

ATGGCTGTGTTTACACTCTCGTTCAAGTGCCGAATCGAGAGCGGCAGCAGCGCAGCTTCGGACGAGCTACGGAAAGAAGAGATGATACTCCGATTGCAAAGTTTGAGCCTTCTGGTCCCAGGACATCGGTTGGGCGATTTCCTACAGCAAATCCTCAAAGAAATTGCATTATGGGCAGATGAGGCAACTATTCAAGTGGCTACAGACGTGTTCCCTCTCACTCTACACGCGGATCCCGCGACATACGAGTACCACCTCGAGCAGTTTCTTTCCGGGCACGGCATATCCATGGCCGCCACCAAGATGATCTTTGACGGGATCCTGGTGTACGTGAGCGAACCTGAGAGAGAGAGGAAACTATACATCACGGTGAATGTGGACCACATCGAACTGAATTCGACGTCGACGCTCGAGATGAAAGGAGAAGAAGTTCAAGATCTTCCAGAGGATGAAATTTGTAGTATCTGTTTGGATGAACTGAGAGGCGGGAAAATGGAGGAGGTTGAGGTTGCTTGCGGGCATGCGTATCATGATTTGTGTATCTATAATTGGTTGGCCAATAACACTACATGCCCTTTGTGCCGAGCCTTTTTGGACTTCTAA

Protein sequence

MAVFTLSFKCRIESGSSAASDELRKEEMILRLQSLSLLVPGHRLGDFLQQILKEIALWADEATIQVATDVFPLTLHADPATYEYHLEQFLSGHGISMAATKMIFDGILVYVSEPERERKLYITVNVDHIELNSTSTLEMKGEEVQDLPEDEICSICLDELRGGKMEEVEVACGHAYHDLCIYNWLANNTTCPLCRAFLDF

Homology

[Close]

BLAST of Sed0015169 vs. NCBI nr
Match: KGN66555.2 (hypothetical protein Csa_007514 [Cucumis sativus])

HSP 1 Score: 80.5 bits (197), Expect = 1.8e-11
Identity = 44/135 (32.59%), Postives = 72/135 (53.33%), Query Frame = 0


Query: 76  HADPATYEYHLEQFLSGHGISMAATKMIFDGILVYVSEPERER---KLYITVNVDHIELN 135
           + +P+++ +++ Q  S   I+  A++ +   I +  ++   E      +I V +D I   
Sbjct: 71  YGEPSSFTFYVAQLFSSLNINSIASEAMARNIFLIANQVANENSNASFHIAVIIDFINFT 130

Query: 136 -----STSTLEMKGEEVQDLPEDEI------CSICLDELRGGKMEEV-EVACGHAYHDLC 195
                S ST ++ G EV  + + +I      CSICLDEL     E V +++CGH YH+LC
Sbjct: 131 WMCPLSFSTRQLTGNEVSMVEQKKIGNDLGDCSICLDELSPSNREVVLKISCGHVYHELC 190

[Close]

BLAST of Sed0015169 vs. NCBI nr
Match: XP_023518048.1 (uncharacterized protein LOC111781594 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 77.4 bits (189), Expect = 1.5e-10
Identity = 66/229 (28.82%), Postives = 98/229 (42.79%), Query Frame = 0


Query: 11  RIESGSSAASDELRKEEMILRLQSLSLLVPGHRLGDFLQQILKEIALWADEATIQVATDV 70
           RI   +SAAS E   + + L+L  +          D     L  +    + A I +   +
Sbjct: 12  RIYGYTSAASGEQPYQVLQLQLHYIR--------RDISVSPLSGVTYLQETAPILLRNLL 71

Query: 71  FPLTLHA--DPATYEYHLEQFLSGHGISMAATKMIFDGILVY---VSEPERERKLYITVN 130
           FPL L    DP   + ++ Q LS   +   A + I + I+ Y   ++   RE   +  V+
Sbjct: 72  FPLPLQELHDPVILQVYVAQLLSLLNVRSPACEAIAERIVSYTILMAGGNRETSFHTVVD 131

Query: 131 VDHIELNS-------------------------------TSTLEMKGEEVQDLPEDEICS 190
           +D I L +                               T  +E  GEE+ D      CS
Sbjct: 132 LDFIRLITWMEENHGLFQGWSNGSAEGEETVILEEARPVTEKVEENGEEMGD------CS 191

Query: 191 ICLDELRG-----GKMEE--VEVACGHAYHDLCIYNWLANNTTCPLCRA 197
           ICL+EL G     GK  E  + + CGH YH+ CI+NWL +N++CPLCRA
Sbjct: 192 ICLEELNGNGNGEGKKREEVIRMQCGHVYHESCIFNWLHHNSSCPLCRA 226

[Close]

BLAST of Sed0015169 vs. NCBI nr
Match: KAG6595650.1 (hypothetical protein SDJN03_12203, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 75.1 bits (183), Expect = 7.7e-10
Identity = 68/235 (28.94%), Postives = 102/235 (43.40%), Query Frame = 0


Query: 11  RIESGSSAASDELRKEEMILRLQSLSLLVPGHRLGDFLQQI----LKEIALWADEATIQV 70
           RI   +SAAS E  +   +L+LQ          L  F ++I    L  +    + A I +
Sbjct: 12  RIYGYTSAASGE--QPYQVLQLQ----------LRYFRREISVSPLSGVTYLQETAPILL 71

Query: 71  ATDVFPLTLHA--DPATYEYHLEQFLSGHGISMAATKMIFDGILVY---VSEPERERKLY 130
              +FPL L    DP   + ++ Q LS   +     ++I + I+ Y   V+   RE   +
Sbjct: 72  RNLLFPLRLQELHDPVFLQVYVAQLLSLLNVRSPVREVIAERIVSYTLLVAGGNRETSFH 131

Query: 131 ITVNVDHIELNS-------------------------------TSTLEMKGEEVQDLPED 190
             + +D+I L +                               T  +E  GEE+ D    
Sbjct: 132 TVLELDYIRLITWMEENHGLFQGWSNDNAAGEETAILEEARPVTEKVEENGEEMGD---- 191

Query: 191 EICSICLDELRG-------GKMEE--VEVACGHAYHDLCIYNWLANNTTCPLCRA 197
             CSICL+EL G       GK  E  + + CGH YH+ CI+NWL +N++CPLCRA
Sbjct: 192 --CSICLEELNGNGNGKGEGKKREEVIRMQCGHVYHESCIFNWLHHNSSCPLCRA 228

[Close]

BLAST of Sed0015169 vs. NCBI nr
Match: XP_022151640.1 (E3 ubiquitin-protein ligase RNF181-like [Momordica charantia])

HSP 1 Score: 74.3 bits (181), Expect = 1.3e-09
Identity = 49/162 (30.25%), Postives = 79/162 (48.77%), Query Frame = 0


Query: 56  ALWADEATIQVATDVFPLTLHA--DPATYEYHLEQFLSGHGISMAATKMIFDGILVYVSE 115
           A+  + +   +A  VFPL L A       E ++ Q L    +   A ++I   I  +V E
Sbjct: 47  AILQETSWTPMANAVFPLPLSALNGLLFLEAYIRQLLCSLDLPEGACEVIARKIASFVVE 106

Query: 116 ----PERERKLYITVNVDHIE------------LNSTSTLEMKGEEVQDLPEDEICSICL 175
                  +  L++   VD+IE               ++   +K E+V++  E   CS+CL
Sbjct: 107 LAGGNSDQVNLHVVALVDYIEEMAIVAEEAPAGAAKSAISRLKKEKVEEEVELGDCSVCL 166

Query: 176 DELRGGKMEEVEVACGHAYHDLCIYNWLANNTTCPLCRAFLD 200
           +E+ GG  E +++ CGH YH+ CI +WL  N +CPLCR  L+
Sbjct: 167 NEMNGGS-EVIKMPCGHVYHESCILSWLNKNNSCPLCRTKLE 207

[Close]

BLAST of Sed0015169 vs. NCBI nr
Match: KAG6595648.1 (hypothetical protein SDJN03_12201, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 73.9 bits (180), Expect = 1.7e-09
Identity = 67/235 (28.51%), Postives = 102/235 (43.40%), Query Frame = 0


Query: 11  RIESGSSAASDELRKEEMILRLQSLSLLVPGHRLGDFLQQI----LKEIALWADEATIQV 70
           RI   +SAAS E  +   +L+LQ          L  F ++I    L  +    + A I +
Sbjct: 12  RIYGYTSAASGE--QPYQVLQLQ----------LRYFRREISVSPLSGVTYLQETAPILL 71

Query: 71  ATDVFPLTLHA--DPATYEYHLEQFLSGHGISMAATKMIFDGILVY---VSEPERERKLY 130
              +FPL L    DP   + ++ Q LS   +     ++I + I+ Y   V+   RE   +
Sbjct: 72  RNLLFPLRLQELHDPVFLQVYVAQLLSLLNVRSPVREVIAERIVSYTLLVAGGNRETSFH 131

Query: 131 ITVNVDHIELNS-------------------------------TSTLEMKGEEVQDLPED 190
             + +D+I + +                               T  +E  GEE+ D    
Sbjct: 132 TVLELDYIRVITWMEENHGLFQGWSNDNAAGEETAILEEARPVTEKVEENGEEMGD---- 191

Query: 191 EICSICLDELRG-------GKMEE--VEVACGHAYHDLCIYNWLANNTTCPLCRA 197
             CSICL+EL G       GK  E  + + CGH YH+ CI+NWL +N++CPLCRA
Sbjct: 192 --CSICLEELNGNGNGNGEGKKREEVIRMQCGHVYHESCIFNWLHHNSSCPLCRA 228

[Close]

BLAST of Sed0015169 vs. ExPASy Swiss-Prot
Match: Q9LRB7 (E3 ubiquitin-protein ligase EL5 OS=Oryza sativa subsp. japonica OX=39947 GN=EL5.1 PE=1 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 9.8e-08
Identity = 32/84 (38.10%), Postives = 46/84 (54.76%), Query Frame = 0


Query: 113 EPERERKLYITVNVDHIELNSTSTLEMKGEEVQDLPEDEI-CSICLDELRGGKMEEVEVA 172
           +PE  R L +TV        ST+    K EE +D  +D + C++CL EL  G+       
Sbjct: 100 DPEVLRSLPVTV-----YSRSTAAAAAKEEEEED--DDGVECAVCLAELEDGEEARFLPR 159

Query: 173 CGHAYHDLCIYNWLANNTTCPLCR 196
           CGH +H  C+  WL +++TCPLCR
Sbjct: 160 CGHGFHAECVDMWLGSHSTCPLCR 176

[Close]

BLAST of Sed0015169 vs. ExPASy Swiss-Prot
Match: Q9SRM0 (RING-H2 finger protein ATL66 OS=Arabidopsis thaliana OX=3702 GN=ATL66 PE=2 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 8.3e-07
Identity = 29/91 (31.87%), Postives = 45/91 (49.45%), Query Frame = 0


Query: 105 DGILVYVSEPERERKLYITVNVDHIELNSTSTLEMKGEEVQDLPEDEICSICLDELRGGK 164
           D I ++ S P+R  +   +  +D  E+ S   +  + E  ++  E E C ICL     G+
Sbjct: 61  DSINLHASSPDRLTRCR-SGGLDPAEIRSLPVVLCRRERAEEEEEKE-CCICLGGFEEGE 120

Query: 165 MEEVEVACGHAYHDLCIYNWLANNTTCPLCR 196
             +V   C H YH  C+  WL   ++CPLCR
Sbjct: 121 KMKVLPPCSHCYHCECVDRWLKTESSCPLCR 149

[Close]

BLAST of Sed0015169 vs. ExPASy Swiss-Prot
Match: Q9SRQ8 (RING-H2 finger protein ATL51 OS=Arabidopsis thaliana OX=3702 GN=ATL51 PE=2 SV=2)

HSP 1 Score: 54.7 bits (130), Expect = 1.4e-06
Identity = 22/59 (37.29%), Postives = 33/59 (55.93%), Query Frame = 0


Query: 140 KGEEVQDLPEDEICSICLDELRGGKMEEVEVACGHAYHDLCIYNWLANNTTCPLCRAFL 199
           K  ++    E   CS+CL E +  +   +   C HA+H  CI  WL +++ CPLCRAF+
Sbjct: 146 KYRKMDGFVESSDCSVCLSEFQENESLRLLPKCNHAFHVPCIDTWLKSHSNCPLCRAFI 204

[Close]

BLAST of Sed0015169 vs. ExPASy Swiss-Prot
Match: Q9SN28 (RING-H2 finger protein ATL7 OS=Arabidopsis thaliana OX=3702 GN=ATL7 PE=2 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 4.1e-06
Identity = 21/50 (42.00%), Postives = 31/50 (62.00%), Query Frame = 0


Query: 149 EDEICSICLDELRGGKMEEVEVACGHAYHDLCIYNWLANNTTCPLCRAFL 199
           +D  CS+CL + +  +  +   +CGH +H  CI  WL ++TTCPLCR  L
Sbjct: 107 KDSQCSVCLGDYQAEEKLQQMPSCGHTFHMECIDLWLTSHTTCPLCRLSL 156

[Close]

BLAST of Sed0015169 vs. ExPASy Swiss-Prot
Match: Q90ZT7 (E3 ubiquitin-protein ligase arkadia-A (Fragment) OS=Xenopus laevis OX=8355 GN=rnf111-a PE=2 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 4.1e-06
Identity = 22/59 (37.29%), Postives = 33/59 (55.93%), Query Frame = 0


Query: 141 GEEVQDLPEDEICSICLDELRGGKMEEVEVACGHAYHDLCIYNWLANNTTCPLCRAFLD 200
           GEE  +   +E C+ICL  L  G+ +   + C H +H +C+  WL  N  CP+CR  +D
Sbjct: 859 GEEAPEEDTEEKCTICLSILEEGE-DVRRLPCMHLFHQVCVDQWLITNKKCPICRVDID 916

[Close]

BLAST of Sed0015169 vs. ExPASy TrEMBL
Match: A0A0A0LW68 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G573640 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 8.9e-12
Identity = 44/135 (32.59%), Postives = 72/135 (53.33%), Query Frame = 0


Query: 76  HADPATYEYHLEQFLSGHGISMAATKMIFDGILVYVSEPERER---KLYITVNVDHIELN 135
           + +P+++ +++ Q  S   I+  A++ +   I +  ++   E      +I V +D I   
Sbjct: 71  YGEPSSFTFYVAQLFSSLNINSIASEAMARNIFLIANQVANENSNASFHIAVIIDFINFT 130

Query: 136 -----STSTLEMKGEEVQDLPEDEI------CSICLDELRGGKMEEV-EVACGHAYHDLC 195
                S ST ++ G EV  + + +I      CSICLDEL     E V +++CGH YH+LC
Sbjct: 131 WMCPLSFSTRQLTGNEVSMVEQKKIGNDLGDCSICLDELSPSNREVVLKISCGHVYHELC 190

[Close]

BLAST of Sed0015169 vs. ExPASy TrEMBL
Match: A0A6J1DBR5 (E3 ubiquitin-protein ligase RNF181-like OS=Momordica charantia OX=3673 GN=LOC111019547 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 6.3e-10
Identity = 49/162 (30.25%), Postives = 79/162 (48.77%), Query Frame = 0


Query: 56  ALWADEATIQVATDVFPLTLHA--DPATYEYHLEQFLSGHGISMAATKMIFDGILVYVSE 115
           A+  + +   +A  VFPL L A       E ++ Q L    +   A ++I   I  +V E
Sbjct: 47  AILQETSWTPMANAVFPLPLSALNGLLFLEAYIRQLLCSLDLPEGACEVIARKIASFVVE 106

Query: 116 ----PERERKLYITVNVDHIE------------LNSTSTLEMKGEEVQDLPEDEICSICL 175
                  +  L++   VD+IE               ++   +K E+V++  E   CS+CL
Sbjct: 107 LAGGNSDQVNLHVVALVDYIEEMAIVAEEAPAGAAKSAISRLKKEKVEEEVELGDCSVCL 166

Query: 176 DELRGGKMEEVEVACGHAYHDLCIYNWLANNTTCPLCRAFLD 200
           +E+ GG  E +++ CGH YH+ CI +WL  N +CPLCR  L+
Sbjct: 167 NEMNGGS-EVIKMPCGHVYHESCILSWLNKNNSCPLCRTKLE 207

[Close]

BLAST of Sed0015169 vs. ExPASy TrEMBL
Match: A0A5A7TLM1 (E3 ubiquitin-protein ligase RNF181-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G001430 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.1e-09
Identity = 30/58 (51.72%), Postives = 39/58 (67.24%), Query Frame = 0


Query: 141 GEEVQDLPEDE---ICSICLDELRGGKMEEVEVACGHAYHDLCIYNWLANNTTCPLCR 196
           GE ++ L  +E    CS+CLDEL  GK E + + CGH YH+ CI+ WL NN +CPLCR
Sbjct: 155 GERLRKLKSEEEEGDCSVCLDELDCGKREVIRIPCGHVYHESCIFEWLNNNNSCPLCR 212

[Close]

BLAST of Sed0015169 vs. ExPASy TrEMBL
Match: A0A1S4DZR1 (uncharacterized protein LOC107991269 OS=Cucumis melo OX=3656 GN=LOC107991269 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.1e-09
Identity = 30/58 (51.72%), Postives = 39/58 (67.24%), Query Frame = 0


Query: 141 GEEVQDLPEDE---ICSICLDELRGGKMEEVEVACGHAYHDLCIYNWLANNTTCPLCR 196
           GE ++ L  +E    CS+CLDEL  GK E + + CGH YH+ CI+ WL NN +CPLCR
Sbjct: 155 GERLRKLKSEEEEGDCSVCLDELDCGKREVIRIPCGHVYHESCIFEWLNNNNSCPLCR 212

[Close]

BLAST of Sed0015169 vs. ExPASy TrEMBL
Match: A0A5D3E1S5 (E3 ubiquitin-protein ligase RNF181-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold208G00800 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 7.0e-09
Identity = 29/54 (53.70%), Postives = 38/54 (70.37%), Query Frame = 0


Query: 142 EEVQDLPEDEICSICLDELRGGKMEEVEVACGHAYHDLCIYNWLANNTTCPLCR 196
           E+V+DL +   CSICLDEL   K E + + CGH YH+ CI+ WL N+ +CPLCR
Sbjct: 166 EKVEDLGD---CSICLDELSCEKREVIRIPCGHVYHESCIFKWLKNHNSCPLCR 216

[Close]

BLAST of Sed0015169 vs. TAIR 10
Match: AT4G12140.1 (RING/U-box superfamily protein )

HSP 1 Score: 58.2 bits (139), Expect = 9.1e-09
Identity = 29/87 (33.33%), Postives = 42/87 (48.28%), Query Frame = 0


Query: 122 ITVNVDHIELNSTSTLE--------MKGEEVQDL-PEDEICSICLDEL-RGGKMEEVEVA 181
           +TV   ++ +  TS+ E        MK EE++    E + CSICL  L    K     ++
Sbjct: 113 VTVTYQYVHVEETSSKESRMVRLGSMKAEELKSFNMETDSCSICLQSLVSSSKTGPTRMS 172

Query: 182 CGHAYHDLCIYNWLANNTTCPLCRAFL 199
           C H +H  C+  WL    TCP+CR  L
Sbjct: 173 CSHVFHSSCLVEWLKRKNTCPMCRTVL 199

[Close]

BLAST of Sed0015169 vs. TAIR 10
Match: AT1G68070.1 (Zinc finger, C3HC4 type (RING finger) family protein )

HSP 1 Score: 57.0 bits (136), Expect = 2.0e-08
Identity = 27/58 (46.55%), Postives = 30/58 (51.72%), Query Frame = 0


Query: 138 EMKGEEVQDLPEDEICSICLDELRGGKMEEVEVACGHAYHDLCIYNWLANNTTCPLCR 196
           E  G E   LPED  C ICL     G  E V + C H +H  CI  WL  N TCPLC+
Sbjct: 277 ENLGNERVLLPEDADCCICLSSYEDG-AELVSLPCNHHFHSTCIVKWLKMNATCPLCK 333

[Close]

BLAST of Sed0015169 vs. TAIR 10
Match: AT4G05350.1 (RING/U-box superfamily protein )

HSP 1 Score: 56.6 bits (135), Expect = 2.6e-08
Identity = 32/81 (39.51%), Postives = 40/81 (49.38%), Query Frame = 0


Query: 121 YITVNV---DHIELNSTSTLEMKGEEVQDLP-EDEICSICLDELRGG--KMEEVEVACGH 180
           Y TV+V   D   L       MK EE + L  E E CSICL+ L  G    +   + C H
Sbjct: 121 YRTVSVMSNDEKSLRMVLLGRMKAEEFKSLKMETEPCSICLESLVSGPKPRDVTRMTCSH 180

Query: 181 AYHDLCIYNWLANNTTCPLCR 196
            +H+ C+  WL    TCPLCR
Sbjct: 181 VFHNGCLLEWLKRKNTCPLCR 201

[Close]

BLAST of Sed0015169 vs. TAIR 10
Match: AT3G11110.1 (RING/U-box superfamily protein )

HSP 1 Score: 55.5 bits (132), Expect = 5.9e-08
Identity = 29/91 (31.87%), Postives = 45/91 (49.45%), Query Frame = 0


Query: 105 DGILVYVSEPERERKLYITVNVDHIELNSTSTLEMKGEEVQDLPEDEICSICLDELRGGK 164
           D I ++ S P+R  +   +  +D  E+ S   +  + E  ++  E E C ICL     G+
Sbjct: 61  DSINLHASSPDRLTRCR-SGGLDPAEIRSLPVVLCRRERAEEEEEKE-CCICLGGFEEGE 120

Query: 165 MEEVEVACGHAYHDLCIYNWLANNTTCPLCR 196
             +V   C H YH  C+  WL   ++CPLCR
Sbjct: 121 KMKVLPPCSHCYHCECVDRWLKTESSCPLCR 149

[Close]

BLAST of Sed0015169 vs. TAIR 10
Match: AT3G03550.1 (RING/U-box superfamily protein )

HSP 1 Score: 54.7 bits (130), Expect = 1.0e-07
Identity = 22/59 (37.29%), Postives = 33/59 (55.93%), Query Frame = 0


Query: 140 KGEEVQDLPEDEICSICLDELRGGKMEEVEVACGHAYHDLCIYNWLANNTTCPLCRAFL 199
           K  ++    E   CS+CL E +  +   +   C HA+H  CI  WL +++ CPLCRAF+
Sbjct: 146 KYRKMDGFVESSDCSVCLSEFQENESLRLLPKCNHAFHVPCIDTWLKSHSNCPLCRAFI 204

The following BLAST results are available for this feature:

BLAST of Sed0015169 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN66555.2	1.8e-11	32.59	hypothetical protein Csa_007514 [Cucumis sativus]	[more]
XP_023518048.1	1.5e-10	28.82	uncharacterized protein LOC111781594 [Cucurbita pepo subsp. pepo]	[more]
KAG6595650.1	7.7e-10	28.94	hypothetical protein SDJN03_12203, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022151640.1	1.3e-09	30.25	E3 ubiquitin-protein ligase RNF181-like [Momordica charantia]	[more]
KAG6595648.1	1.7e-09	28.51	hypothetical protein SDJN03_12201, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Sed0015169 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LRB7	9.8e-08	38.10	E3 ubiquitin-protein ligase EL5 OS=Oryza sativa subsp. japonica OX=39947 GN=EL5....	[more]
Q9SRM0	8.3e-07	31.87	RING-H2 finger protein ATL66 OS=Arabidopsis thaliana OX=3702 GN=ATL66 PE=2 SV=1	[more]
Q9SRQ8	1.4e-06	37.29	RING-H2 finger protein ATL51 OS=Arabidopsis thaliana OX=3702 GN=ATL51 PE=2 SV=2	[more]
Q9SN28	4.1e-06	42.00	RING-H2 finger protein ATL7 OS=Arabidopsis thaliana OX=3702 GN=ATL7 PE=2 SV=1	[more]
Q90ZT7	4.1e-06	37.29	E3 ubiquitin-protein ligase arkadia-A (Fragment) OS=Xenopus laevis OX=8355 GN=rn...	[more]

BLAST of Sed0015169 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LW68	8.9e-12	32.59	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G573640 P...	[more]
A0A6J1DBR5	6.3e-10	30.25	E3 ubiquitin-protein ligase RNF181-like OS=Momordica charantia OX=3673 GN=LOC111...	[more]
A0A5A7TLM1	1.1e-09	51.72	E3 ubiquitin-protein ligase RNF181-like protein OS=Cucumis melo var. makuwa OX=1...	[more]
A0A1S4DZR1	1.1e-09	51.72	uncharacterized protein LOC107991269 OS=Cucumis melo OX=3656 GN=LOC107991269 PE=...	[more]
A0A5D3E1S5	7.0e-09	53.70	E3 ubiquitin-protein ligase RNF181-like protein OS=Cucumis melo var. makuwa OX=1...	[more]

BLAST of Sed0015169 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G12140.1	9.1e-09	33.33	RING/U-box superfamily protein	[more]
AT1G68070.1	2.0e-08	46.55	Zinc finger, C3HC4 type (RING finger) family protein	[more]
AT4G05350.1	2.6e-08	39.51	RING/U-box superfamily protein	[more]
AT3G11110.1	5.9e-08	31.87	RING/U-box superfamily protein	[more]
AT3G03550.1	1.0e-07	37.29	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 153..194 e-value: 3.7E-5 score: 33.1
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 152..195 e-value: 1.4E-11 score: 44.6
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 153..195 score: 12.710573
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 129..198 e-value: 7.4E-16 score: 59.2
None	No IPR available	PANTHER	PTHR22765	RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING	coord: 125..196
None	No IPR available	PANTHER	PTHR22765:SF329	SUBFAMILY NOT NAMED	coord: 125..196
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 146..198

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0015169.1	Sed0015169.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044267	cellular protein metabolic process