Sed0015139 (gene) Chayote v1

Overview


Name	Sed0015139
Type	gene
Organism	Sechium edule (Chayote v1)
Description	RING/U-box superfamily protein
Location	LG06: 190713 .. 194138 (-)
RNA-Seq Expression	Sed0015139
Synteny	Sed0015139

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGATTTCCATGACGATGCATGGTCCTTTGATGACGACGCATCGTCATTGTTGGATGATGAAGAGTTGGCAGAACAATTACAGCTCGAGGAAGCAATCTTGGCTTCAATGATTGCAATGGAGGATAACAATTCTTCTGAAACAATGTGCTGCACCATCTGTATGGACACAAAATCTGTAGATGAAATGTTCACAATCGAAGGCTGCTCACATTCGTTCTGCGCCGACTGCATCTCCCACCACATTGCTGCGAAGCTCGAGGACCACGCGGCGGTGAAGTGTCCGGAGCCGAAGTGCACGGTGGTGCTGGAGCCGGGTATGTGGGAGTTTTTGGTTTCGAAAGAGGTGTTGGAGTGGTGGGGAGATGCTCTGTTAGAGGCGATGCTTGTGAAGACGAAGAGAATCTACTGTCCGTTTGAGGAGTGCTCGGGGGTGATGGTGGACGATGGAGAGGAGGCGGCGAGGGAAGCGGAGTGTCCGAGTTGTTGGAGAATGTTCTGCGCGCGATGTGAAGTTGGATGGCATGAGGATATGGAATGCGAGGAGTTTGAGAAACTACGGAAGGAGTTGGGAGGAGGAGACAGAGAGGATGTGTTGACGTTGAAGCTGGCTGGTAGCAACAAATGGAAGAGATGCTCTCAATGCAATATTTATGTTGATAAGATCGAAGGTTGCTCCCATATTACCTGCATGTAAATTACTCTTTCTCCTTCCTCTCATTTTTCTTCTAGAGTATTTAGTATATGGTGTAATTTGGTTTCATTATATATATATGTGTGTGTGTGTGAAAAATGTGAAATTACTTTGTAGGTGTGGTTCAGAATTTTGCTACAGCTGTGGATCAGAGTGGAGTAGCGGCCATGCATGCACCTAAATATACATTTTATTATTATGGTATTCATCATCCATGCAGCGAAAAGCCCACTTTACAACCAAACTGGTGCATTTCTATTTCTCATTTTTGGGCTCTCAAATTTCACATGAATTGCCTGCCTGCCCTCATGTGTACTATTACTTTAAAATTCTGATTCATGATTGGATTGTCTAAAATCTCTCAAATTATGTGTGTTTTAAGTTTTTTGGTATCCTATTTCAGAGTGAAAATTTTAAAATATATTGTTAGCGAGCCTATTGTGTATGCCATCGGATCTACTAGCGAGCTTGTTAAGCATCGACATATAGCGGTCATTAGTAGTACATTGTAGAAGCATGTATGTTAGCAAATCTACTATTGAGCCTGTTACGCATGCCAGATAGTAGATCCTTTGCATGCACATGTTGCAGACCCTTGATTGTGTTGTTATTTTGTACTCACATTTTTCCTATTTCTCCCAACTACTTGGGCTTTACTGAGAATTTTTTACATTTATTTCATATGTTGTCGTTTTACAACTCTGGAATTATTTGTGGTTTTATCTTAAACATTGGGATTCTGAACTGTGTTTTCAATTAATGTAATCTTGAGGGCATTATAATTTCTTTTTCATGGTGTGTTTGAGTTAGATTTTATGATGATATTGAATGCATATGGATCAGTAATACCATATAAGGAGGTCGATAGAGAGTATATTTACGCTTAAGTATATTTGCTTAATTCCTTTGAATATAGCCGAGGGTCAGTGGTGCAGTTGGTTATCTTGTTTGGTGTTAATTCATTTTAACTCCACGGTCACGAGTCCTCTCATATTATTTGAGAGCAGTTGTGCTCTCTATGTAAGATTTGTTGGTCCCCCTCCCCCATACTAAAAAAAAACAATCCTTTGAATATAACGGTTATAACTATAATGAATTCCTTTTTCAAAAAAAAAAAAACTATAATGAATTCCACAAAAAAAAAACAAATACATAATAATTTGGCTAAAGTTATTTTAAATTAGCTAATTGATATATATTATTGCAAGGTGTACATAAATAATTGGGGATTCTTTTTTATAACAAGAAAAAAAAAATCTTTGAATAGGAACTTTAAAAGAAATTCATACGATGACAAAAAGATTGAAGCACGTCTAGCAAAAAGATGAAAAAGTTTATGCGCCTGAAGATATCAACCAATGCAATAGGTAGTCTTCAATTGATAATGTACATATAATTTTCAATCTACGTCACAAAGATTTTTCAATTATTATCACAAACTGTCTTTAATAAACATAGTATTCAATCGATGTCATATATAGTACTTTTCAATCATTGTAGCTATACTCTTCAATCAAGAGATAGTAAAGATAGAATTGAAATACACAAAAAAAAAACCAAAAAATCTAGAAAAGTGTTATATTAAAATAGACAACTAAAAAGTTATTACTAATGTTCTCAAATAAATAAGAGTCAAATACTAATTCTTTGAATTAAATCCATGACCATGGTGTTTAATTGAATTACCACCAAATAATGAAATCAACAGGCCACCGACCAATTCAATATCTAATTTCAATTTTTGTACTTTAAAAAGAATTAGAAAATGTACTTTTTATATATATGATAAATTCAAACTAACAAAATAACATACAACTTAGTGACAATATTAATGTATATTTAATGATGAAGTTGTTATGTTTCAAATTCCCATCTTCCATTATTATAGGGTACAAAAAAAAATATATGATAAATTTAAAGTTATATTTATTAATGAAGATTGGTTGAATAATGCAAGTATTTTGTTTATAGAAGATAAAAACAAAACATGGAGGGTTATTTTTGTGGGATAAAGGGAAACAAATTCAAAGTATATGGAGAAAATGAACCGTATAAAAAGCTAAATTGAATTATTATAAAATAAAAAAAATGGGGGAGTTAAATTAGGAAAATGAAACGAAGAGGCAGGGCGTGTGTGTGTTTATTGTGCATGGGAAATGGTTATATTTGTCCCTTTAAATTCGGATAAGTTTCGCCCAATTGAAGATGAAGTACATAGCACACATCACAGCACTTCGTTGGAGGTGATATCGGTTGTTCCGAGTACGATATGCTGAGAGTAGTGTACTGCCCGTTCGAGGACTGCTCGATGAAGGTGTTTGGCTACGAACCGATGACGGCGACATATTGTACGAGCTGTTGGAGAATGTTCTGCGCGCAGTGTAACGTGAGATATTGGCACGAGGAAATGGAATGCGAAGAGTTCCAGAAATTGCGCAACCATTATTTACGCAGCGACGACAACGACGACGATGCAATGATGATGATCATACTTGCTCATAGGAACAAATGGAAAAGATGCCCTAATTGCAAAAGTTTTGTTGACAAAATTGATGGTTGCCTCCATATTACCTGCCTGTAATGAACCACCTTTCCTTCATAACGGTTTTTATAAATATTACTCTAATTCATATAAATGGATAATCATTTAGTGAAGTTTATTGTAGGTGTGGATCGGAGTTTTGCTACAGCTGTGGATCCAAGTGGACTAGTGGCCATGCATGTACCTAA

mRNA sequence

ATGGAAGATTTCCATGACGATGCATGGTCCTTTGATGACGACGCATCGTCATTGTTGGATGATGAAGAGTTGGCAGAACAATTACAGCTCGAGGAAGCAATCTTGGCTTCAATGATTGCAATGGAGGATAACAATTCTTCTGAAACAATGTGCTGCACCATCTGTATGGACACAAAATCTGTAGATGAAATGTTCACAATCGAAGGCTGCTCACATTCGTTCTGCGCCGACTGCATCTCCCACCACATTGCTGCGAAGCTCGAGGACCACGCGGCGGTGAAGTGTCCGGAGCCGAAGTGCACGGTGGTGCTGGAGCCGGGTATGTGGGAGTTTTTGGTTTCGAAAGAGGTGTTGGAGTGGTGGGGAGATGCTCTGTTAGAGGCGATGCTTGTGAAGACGAAGAGAATCTACTGTCCGTTTGAGGAGTGCTCGGGGGTGATGGTGGACGATGGAGAGGAGGCGGCGAGGGAAGCGGAGTGTCCGAGTTGTTGGAGAATGTTCTGCGCGCGATGTGAAGTTGGATGGCATGAGGATATGGAATGCGAGGAGTTTGAGAAACTACGGAAGGAGTTGGGAGGAGGAGACAGAGAGGATGTGTTGACGTTGAAGCTGGCTGGTAGCAACAAATGGAAGAGATGCTCTCAATGCAATATTTATGTTGATAAGATCGAAGGTTGCTCCCATATTACCTGCATGTGTGGATCGGAGTTTTGCTACAGCTGTGGATCCAAGTGGACTAGTGGCCATGCATGTACCTAA

Coding sequence (CDS)

ATGGAAGATTTCCATGACGATGCATGGTCCTTTGATGACGACGCATCGTCATTGTTGGATGATGAAGAGTTGGCAGAACAATTACAGCTCGAGGAAGCAATCTTGGCTTCAATGATTGCAATGGAGGATAACAATTCTTCTGAAACAATGTGCTGCACCATCTGTATGGACACAAAATCTGTAGATGAAATGTTCACAATCGAAGGCTGCTCACATTCGTTCTGCGCCGACTGCATCTCCCACCACATTGCTGCGAAGCTCGAGGACCACGCGGCGGTGAAGTGTCCGGAGCCGAAGTGCACGGTGGTGCTGGAGCCGGGTATGTGGGAGTTTTTGGTTTCGAAAGAGGTGTTGGAGTGGTGGGGAGATGCTCTGTTAGAGGCGATGCTTGTGAAGACGAAGAGAATCTACTGTCCGTTTGAGGAGTGCTCGGGGGTGATGGTGGACGATGGAGAGGAGGCGGCGAGGGAAGCGGAGTGTCCGAGTTGTTGGAGAATGTTCTGCGCGCGATGTGAAGTTGGATGGCATGAGGATATGGAATGCGAGGAGTTTGAGAAACTACGGAAGGAGTTGGGAGGAGGAGACAGAGAGGATGTGTTGACGTTGAAGCTGGCTGGTAGCAACAAATGGAAGAGATGCTCTCAATGCAATATTTATGTTGATAAGATCGAAGGTTGCTCCCATATTACCTGCATGTGTGGATCGGAGTTTTGCTACAGCTGTGGATCCAAGTGGACTAGTGGCCATGCATGTACCTAA

Protein sequence

MEDFHDDAWSFDDDASSLLDDEELAEQLQLEEAILASMIAMEDNNSSETMCCTICMDTKSVDEMFTIEGCSHSFCADCISHHIAAKLEDHAAVKCPEPKCTVVLEPGMWEFLVSKEVLEWWGDALLEAMLVKTKRIYCPFEECSGVMVDDGEEAAREAECPSCWRMFCARCEVGWHEDMECEEFEKLRKELGGGDREDVLTLKLAGSNKWKRCSQCNIYVDKIEGCSHITCMCGSEFCYSCGSKWTSGHACT

Homology

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BLAST of Sed0015139 vs. NCBI nr
Match: XP_022956145.1 (probable E3 ubiquitin-protein ligase ARI10 [Cucurbita moschata])

HSP 1 Score: 302.0 bits (772), Expect = 4.9e-78
Identity = 153/265 (57.74%), Postives = 177/265 (66.79%), Query Frame = 0


Query: 5   HDDAWSFDDDASSLL---------DDEELAEQLQLEEAILASMI---------AMEDNNS 64
           H  + S DD   S+L          DE  AE+LQL+E+I +S+          +    +S
Sbjct: 9   HGSSLSVDDIYFSVLHEHQSVFPISDEIFAEELQLQESIASSLFTSTIMSNKPSPNPESS 68

Query: 65  SETMCCTICMDTKSVDEMFTIEGCSHSFCADCISHHIAAKLEDHAAVKCPEPKCTVVLEP 124
             T  CTIC DTKS  EMFT  GCSH+FCADCIS HIAAKLED  AVKCPEPKC  VLEP
Sbjct: 69  GSTTLCTICTDTKSASEMFTSTGCSHTFCADCISKHIAAKLEDSMAVKCPEPKCAAVLEP 128

Query: 125 GMWEFLVSKEVLEWWGDALLEAMLVKTKRIYCPFEECSGVMVDDGEEAAREAECPSCWRM 184
            M +  V KEVLE WGDALL+AML+K K +YCPF++CS  MVD  EE     ECP CWRM
Sbjct: 129 EMCDSFVPKEVLERWGDALLKAMLLKWKMVYCPFKDCSAGMVD--EEDMEAVECPKCWRM 188

Query: 185 FCARCEVGWHEDMECEEFEKLRKELGGGDREDVLTLKLAGSNKWKRCSQCNIYVDKIEGC 244
           FCA+C VGWH DM C EF++L K  GG DRE+ +T+KLA   KWKRC  C I V+KIEGC
Sbjct: 189 FCAKCGVGWHGDMNCTEFQRLLKN-GGVDREEEMTMKLADERKWKRCPHCKILVEKIEGC 248

Query: 245 SHITCMCGSEFCYSCGSKWTSGHAC 252
            HITC CGSEFCY CG+KW   HAC
Sbjct: 249 LHITCRCGSEFCYCCGAKWNGHHAC 270

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BLAST of Sed0015139 vs. NCBI nr
Match: XP_022980686.1 (probable E3 ubiquitin-protein ligase ARI5 [Cucurbita maxima])

HSP 1 Score: 296.6 bits (758), Expect = 2.0e-76
Identity = 145/241 (60.17%), Postives = 167/241 (69.29%), Query Frame = 0


Query: 19  LDDEELAEQLQLEEAILASMIAMEDNN--------SSETMCCTICMDTKSVDEMFTIEGC 78
           + DE  AE+LQL+E+I +S  +   +N        S     CTIC DTKS  EMFT  GC
Sbjct: 32  ISDEIFAEELQLQESIASSFTSTIMSNKPSPNPESSGSKTLCTICTDTKSASEMFTSTGC 91

Query: 79  SHSFCADCISHHIAAKLEDHAAVKCPEPKCTVVLEPGMWEFLVSKEVLEWWGDALLEAML 138
           SH+FCADCIS HIAAKL D  AVKCPEPKC  VL+P M +  V KEVLE WGDALL+AML
Sbjct: 92  SHTFCADCISKHIAAKLVDSLAVKCPEPKCAAVLKPEMCDSFVPKEVLERWGDALLKAML 151

Query: 139 VKTKRIYCPFEECSGVMVDDGEEAAREAECPSCWRMFCARCEVGWHEDMECEEFEKLRKE 198
           +K K +YCPF++CS  MVD  EE     ECP CWRMFCA+C VGWH DM C EF++L K 
Sbjct: 152 LKWKMVYCPFKDCSAGMVD--EEDREAVECPKCWRMFCAKCGVGWHADMNCTEFQRLLKN 211

Query: 199 LGGGDREDVLTLKLAGSNKWKRCSQCNIYVDKIEGCSHITCMCGSEFCYSCGSKWTSGHA 252
            GG DRE+ +T+KLA   KWKRC  C I V+KI GC HITC CGSEFCYSCG KW   HA
Sbjct: 212 -GGVDREEEMTMKLADERKWKRCPHCKILVEKILGCLHITCRCGSEFCYSCGGKWNDRHA 269

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BLAST of Sed0015139 vs. NCBI nr
Match: XP_023527456.1 (probable E3 ubiquitin-protein ligase rbrA [Cucurbita pepo subsp. pepo] >XP_023527457.1 probable E3 ubiquitin-protein ligase rbrA [Cucurbita pepo subsp. pepo])

HSP 1 Score: 292.7 bits (748), Expect = 3.0e-75
Identity = 136/209 (65.07%), Postives = 157/209 (75.12%), Query Frame = 0


Query: 43  DNNSSETMCCTICMDTKSVDEMFTIEGCSHSFCADCISHHIAAKLEDHAAVKCPEPKCTV 102
           +++ SET+ CTIC  TKS  EMFT  GCSH+FCADCIS HIAA+LED  AVKCPEPKC  
Sbjct: 10  ESSGSETL-CTICTGTKSASEMFTSTGCSHTFCADCISKHIAARLEDSMAVKCPEPKCAA 69

Query: 103 VLEPGMWEFLVSKEVLEWWGDALLEAMLVKTKRIYCPFEECSGVMVDDGEEAAREAECPS 162
           VLEP M +  V KEVLE WGDALL+AML+K K +YCPF++C   MVD  +E     ECP 
Sbjct: 70  VLEPEMCDSFVPKEVLERWGDALLKAMLLKWKMVYCPFKDCLAGMVD--KEDREAVECPK 129

Query: 163 CWRMFCARCEVGWHEDMECEEFEKLRKELGGGDREDVLTLKLAGSNKWKRCSQCNIYVDK 222
           CWRMFCA+C VGWH DM C EF++L K  GG DRE+V+T+KLA   KWKRC  C I V+K
Sbjct: 130 CWRMFCAKCGVGWHGDMNCTEFQRLLKN-GGVDREEVMTMKLADERKWKRCPHCKILVEK 189

Query: 223 IEGCSHITCMCGSEFCYSCGSKWTSGHAC 252
           IEGC HITC CGSEFCYSCG+KW   HAC
Sbjct: 190 IEGCLHITCRCGSEFCYSCGAKWNGHHAC 214

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BLAST of Sed0015139 vs. NCBI nr
Match: XP_038889081.1 (probable E3 ubiquitin-protein ligase RNF144A-A [Benincasa hispida])

HSP 1 Score: 282.0 bits (720), Expect = 5.2e-72
Identity = 135/241 (56.02%), Postives = 171/241 (70.95%), Query Frame = 0


Query: 19  LDDEELAEQLQLEEAILASMIA----MEDNNSS---ETMCCTICMDTKSVDEMFTIEGCS 78
           L DE  A +LQL+EAI +S+ +    + +NNSS   +   CTIC D K   EMFT   CS
Sbjct: 21  LSDENFAYELQLQEAITSSLSSTPAEIPNNNSSPKPQDSICTICTDAKLASEMFTNGLCS 80

Query: 79  HSFCADCISHHIAAKLEDHAAVKCPEPKCTVVLEPGMWEFLVSKEVLEWWGDALLEAMLV 138
           H+FC DCIS +IAAKLED  AVKCP+PKC  +LEP M    + KEVLE WGDAL EAM++
Sbjct: 81  HTFCTDCISKYIAAKLEDSMAVKCPQPKCGTLLEPEMCRSFIPKEVLERWGDALFEAMIL 140

Query: 139 KTKRIYCPFEECSGVMVDDGEEAAREA-ECPSCWRMFCARCEVGWHEDMECEEFEKLRKE 198
           K KR+ CPF++CS  M+ +G+E    A EC +CWR+FCA+C+VGWH DMEC EFEK+RKE
Sbjct: 141 KWKRLNCPFKDCSAPMIYEGDEKGVTAVECLNCWRLFCAQCKVGWHGDMECREFEKVRKE 200

Query: 199 LGGGDREDVLTLKLAGSNKWKRCSQCNIYVDKIEGCSHITCMCGSEFCYSCGSKWTSGHA 252
               + ED++T+KLA   KWK+C  C +YV+K  GC HI C CG++FCYSCG+KW  GHA
Sbjct: 201 ----NTEDMMTMKLADEKKWKKCPNCKVYVEKTVGCVHIICRCGTQFCYSCGAKWGGGHA 257

[Close]

BLAST of Sed0015139 vs. NCBI nr
Match: XP_004144476.2 (probable E3 ubiquitin-protein ligase RNF144A [Cucumis sativus] >KGN58470.1 hypothetical protein Csa_001774 [Cucumis sativus])

HSP 1 Score: 282.0 bits (720), Expect = 5.2e-72
Identity = 132/241 (54.77%), Postives = 167/241 (69.29%), Query Frame = 0


Query: 19  LDDEELAEQLQLEEAILASMIAMEDN------NSSETMCCTICMDTKSVDEMFTIEGCSH 78
           L DE  AE+LQL+E I +S+++   N      +S+  + C+IC D KS  +MFT   C+H
Sbjct: 17  LSDENYAEELQLQEVITSSLLSSPINPSPTPHSSTSQLLCSICTDAKSHSQMFTNRVCTH 76

Query: 79  SFCADCISHHIAAKLEDHAAVKCPEPKCTVVLEPGMWEFLVSKEVLEWWGDALLEAMLVK 138
           +FC  CIS+HIAAKLE   AVKCPEP C  VLEP M    V K VLE W DAL EAM++K
Sbjct: 77  TFCTACISNHIAAKLEVAMAVKCPEPNCGTVLEPEMCGSFVPKRVLERWADALFEAMILK 136

Query: 139 TKRIYCPFEECSGVMVDD-GEEAAREAECPSCWRMFCARCEVGWHEDMECEEFEKLRKEL 198
            KR+ CPF++C   ++D+ GEE     EC SCWR+FCA C VGWH +MEC EF++LRKE 
Sbjct: 137 WKRLNCPFKDCGAAIIDEGGEEGVTAVECGSCWRLFCAECRVGWHGEMECGEFQRLRKEA 196

Query: 199 G-GGDREDVLTLKLAGSNKWKRCSQCNIYVDKIEGCSHITCMCGSEFCYSCGSKWTSGHA 252
           G  GD++D +T+KLA + KW+RC  C IYV+K  GC HI C CGS+FCYSCG+KW  GHA
Sbjct: 197 GVSGDKDDAMTVKLAENKKWRRCPHCKIYVEKTVGCVHIVCRCGSDFCYSCGAKWGGGHA 256

[Close]

BLAST of Sed0015139 vs. ExPASy Swiss-Prot
Match: P0CE10 (ATP-dependent RNA helicase DEAH11, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g01020 PE=3 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 1.0e-17
Identity = 54/205 (26.34%), Postives = 91/205 (44.39%), Query Frame = 0


Query: 52   CTICMDTKSVDEMFTIEGCSHSFCADCISHHIAAKLEDHAA--VKCPEPKCTVVLEPGMW 111
            C IC+    VD+ +++EGCSH FC  C+     A + +  A  + C    C   +     
Sbjct: 1561 CPICL--SEVDDGYSLEGCSHLFCKACLLEQFEASMRNFDAFPILCSHIDCGAPIVVADM 1620

Query: 112  EFLVSKEVLEWWGDALLEAMLVKT--KRIYCPFEECSGV-MVDDGEEAAREAECPSCWRM 171
              L+S+E L+    A L A +  +  K  +C   +C  +  V   +E+     C +C   
Sbjct: 1621 RALLSQEKLDELISASLSAFVTSSDGKLRFCSTPDCPSIYRVAGPQESGEPFICGACHSE 1680

Query: 172  FCARCEVGWHEDMECEEFEKLRKELGGGDREDVLTLKLAGSNKWKRCSQCNIYVDKIEGC 231
             C RC + +H  + CE ++K +      +  D+     A     K C  C   ++K +GC
Sbjct: 1681 TCTRCHLEYHPLITCERYKKFK------ENPDLSLKDWAKGKDVKECPICKSTIEKTDGC 1740

Query: 232  SHITCMCGSEFCYSCGSKWTSGHAC 252
            +H+ C CG   C++C   +T    C
Sbjct: 1741 NHLQCRCGKHICWTCLDVFTQAEPC 1757

[Close]

BLAST of Sed0015139 vs. ExPASy Swiss-Prot
Match: F4KGU4 (ATP-dependent RNA helicase DEAH12, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At5g10370 PE=3 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 2.2e-17
Identity = 54/205 (26.34%), Postives = 91/205 (44.39%), Query Frame = 0


Query: 52   CTICMDTKSVDEMFTIEGCSHSFCADCISHHIAAKLEDHAA--VKCPEPKCTVVLEPGMW 111
            C IC+    VD+ +++EGCSH FC  C+     A + +  A  + C    C   +     
Sbjct: 1564 CPICL--SEVDDGYSLEGCSHLFCKACLLEQFEASMRNFDAFPILCSHIDCGAPIVLADM 1623

Query: 112  EFLVSKEVLEWWGDALLEAMLVKT--KRIYCPFEECSGV-MVDDGEEAAREAECPSCWRM 171
              L+S+E L+    A L + +  +  K  +C   +C  V  V   +E+     C +C   
Sbjct: 1624 RALLSQEKLDELFSASLSSFVTSSDGKFRFCSTPDCPSVYRVAGPQESGEPFICGACHSE 1683

Query: 172  FCARCEVGWHEDMECEEFEKLRKELGGGDREDVLTLKLAGSNKWKRCSQCNIYVDKIEGC 231
             C RC + +H  + CE ++K +      +  D+     A     K C  C   ++K +GC
Sbjct: 1684 ICTRCHLEYHPLITCERYKKFK------ENPDLSLKDWAKGKNVKECPICKSTIEKTDGC 1743

Query: 232  SHITCMCGSEFCYSCGSKWTSGHAC 252
            +H+ C CG   C++C   +T    C
Sbjct: 1744 NHMKCRCGKHICWTCLDVFTQEEPC 1760

[Close]

BLAST of Sed0015139 vs. ExPASy Swiss-Prot
Match: Q4KLT0 (Probable E3 ubiquitin-protein ligase RNF217 OS=Xenopus laevis OX=8355 GN=rnf217 PE=2 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.9e-16
Identity = 51/204 (25.00%), Postives = 98/204 (48.04%), Query Frame = 0


Query: 50  MCCTICMDTKSVDEMFTIEGCSHSFCADCISHHIAAKLE-DHAAVKCPEPKCTVVL-EPG 109
           M C +C++ +S+     +  C    C +C+  +++++++   A ++CP  +C   L E  
Sbjct: 1   MSCRVCLEDRSIK---PLPCCKKPVCDECLKRYLSSQVQLGQAEIQCPITECNKHLDEST 60

Query: 110 MWEFLVSKEVLEWWGDALLEAMLVKTK-----RIYCPFEECSGVMVDDGEEAAREAECPS 169
           +   L   +++++     L  M   TK     + +  F+  + +      E   + +CPS
Sbjct: 61  ILYSLPHDDIIKYKYFLELSRMDSSTKPCPQCKHFTTFKRKTHIPNPTKSENKLKIQCPS 120

Query: 170 CWRMFCARCEVGWHEDMECEEFEKLRKELGGGDREDVLTLKLAGSNKWKRCSQCNIYVDK 229
           C  ++C RC   WHE + C E++K  K L     E        G    ++C +C +++ +
Sbjct: 121 CQFIWCFRCHAPWHEGVNCREYKKGDKLLRHWANEIE-----HGQRNAQKCPRCKVHIQR 180

Query: 230 IEGCSHITC-MCGSEFCYSCGSKW 246
            EGC H+TC  C + FCY CG ++
Sbjct: 181 TEGCDHMTCSQCNTNFCYRCGERY 196

[Close]

BLAST of Sed0015139 vs. ExPASy Swiss-Prot
Match: Q8TC41 (Probable E3 ubiquitin-protein ligase RNF217 OS=Homo sapiens OX=9606 GN=RNF217 PE=2 SV=4)

HSP 1 Score: 86.7 bits (213), Expect = 4.2e-16
Identity = 50/206 (24.27%), Postives = 99/206 (48.06%), Query Frame = 0


Query: 50  MCCTICMDTKSVDEMFTIEGCSHSFCADCISHHIAAKLE-DHAAVKCPEPKCTVVLEPGM 109
           + C +C++ K +     +  C  + C +C+  +++A+++     +KCP  +C   LE   
Sbjct: 261 LMCRVCLEDKPIK---PLPCCKKAVCEECLKVYLSAQVQLGQVEIKCPITECFEFLEETT 320

Query: 110 WEF-LVSKEVLEWWGDALLEAMLVKTKRIYCP-------FEECSGVMVDDGEEAAREAEC 169
             + L  ++ +++     LE   + +    CP       F++   +      E+  + +C
Sbjct: 321 VVYNLTHEDSIKY--KYFLELGRIDSSTKPCPQCKHFTTFKKKGHIPTPSRSESKYKIQC 380

Query: 170 PSCWRMFCARCEVGWHEDMECEEFEKLRKELGGGDREDVLTLKLAGSNKWKRCSQCNIYV 229
           P+C  ++C +C   WHE + C+E++K  K L     E        G    ++C +C I++
Sbjct: 381 PTCQFVWCFKCHSPWHEGVNCKEYKKGDKLLRHWASEIE-----HGQRNAQKCPKCKIHI 440

Query: 230 DKIEGCSHITC-MCGSEFCYSCGSKW 246
            + EGC H+TC  C + FCY CG ++
Sbjct: 441 QRTEGCDHMTCSQCNTNFCYRCGERY 456

[Close]

BLAST of Sed0015139 vs. ExPASy Swiss-Prot
Match: D3YYI7 (Probable E3 ubiquitin-protein ligase RNF217 OS=Mus musculus OX=10090 GN=Rnf217 PE=3 SV=2)

HSP 1 Score: 86.3 bits (212), Expect = 5.5e-16
Identity = 49/206 (23.79%), Postives = 99/206 (48.06%), Query Frame = 0


Query: 50  MCCTICMDTKSVDEMFTIEGCSHSFCADCISHHIAAKLE-DHAAVKCPEPKCTVVLEPGM 109
           + C +C++ K +     +  C  + C +C+  +++++++     +KCP  +C   LE   
Sbjct: 234 LMCRVCLEDKPIK---PLPCCKKAVCEECLKIYLSSQVQLGQVEIKCPVTECFEFLEETT 293

Query: 110 WEF-LVSKEVLEWWGDALLEAMLVKTKRIYCP-------FEECSGVMVDDGEEAAREAEC 169
             + L  ++ +++     LE   + +    CP       F++   +      E+  + +C
Sbjct: 294 VVYNLTHEDSIKY--KYFLELGRIDSSTKPCPQCKHFTTFKKKGHIPTPSRSESRYKIQC 353

Query: 170 PSCWRMFCARCEVGWHEDMECEEFEKLRKELGGGDREDVLTLKLAGSNKWKRCSQCNIYV 229
           P+C  ++C +C   WHE + C+E++K  K L     E        G    ++C +C I++
Sbjct: 354 PTCQLIWCFKCHSPWHEGVNCKEYKKGDKLLRHWASEIE-----HGQRNAQKCPKCKIHI 413

Query: 230 DKIEGCSHITC-MCGSEFCYSCGSKW 246
            + EGC H+TC  C + FCY CG ++
Sbjct: 414 QRTEGCDHMTCSQCNTNFCYRCGERY 429

[Close]

BLAST of Sed0015139 vs. ExPASy TrEMBL
Match: A0A6J1GX07 (probable E3 ubiquitin-protein ligase ARI10 OS=Cucurbita moschata OX=3662 GN=LOC111457924 PE=3 SV=1)

HSP 1 Score: 302.0 bits (772), Expect = 2.4e-78
Identity = 153/265 (57.74%), Postives = 177/265 (66.79%), Query Frame = 0


Query: 5   HDDAWSFDDDASSLL---------DDEELAEQLQLEEAILASMI---------AMEDNNS 64
           H  + S DD   S+L          DE  AE+LQL+E+I +S+          +    +S
Sbjct: 9   HGSSLSVDDIYFSVLHEHQSVFPISDEIFAEELQLQESIASSLFTSTIMSNKPSPNPESS 68

Query: 65  SETMCCTICMDTKSVDEMFTIEGCSHSFCADCISHHIAAKLEDHAAVKCPEPKCTVVLEP 124
             T  CTIC DTKS  EMFT  GCSH+FCADCIS HIAAKLED  AVKCPEPKC  VLEP
Sbjct: 69  GSTTLCTICTDTKSASEMFTSTGCSHTFCADCISKHIAAKLEDSMAVKCPEPKCAAVLEP 128

Query: 125 GMWEFLVSKEVLEWWGDALLEAMLVKTKRIYCPFEECSGVMVDDGEEAAREAECPSCWRM 184
            M +  V KEVLE WGDALL+AML+K K +YCPF++CS  MVD  EE     ECP CWRM
Sbjct: 129 EMCDSFVPKEVLERWGDALLKAMLLKWKMVYCPFKDCSAGMVD--EEDMEAVECPKCWRM 188

Query: 185 FCARCEVGWHEDMECEEFEKLRKELGGGDREDVLTLKLAGSNKWKRCSQCNIYVDKIEGC 244
           FCA+C VGWH DM C EF++L K  GG DRE+ +T+KLA   KWKRC  C I V+KIEGC
Sbjct: 189 FCAKCGVGWHGDMNCTEFQRLLKN-GGVDREEEMTMKLADERKWKRCPHCKILVEKIEGC 248

Query: 245 SHITCMCGSEFCYSCGSKWTSGHAC 252
            HITC CGSEFCY CG+KW   HAC
Sbjct: 249 LHITCRCGSEFCYCCGAKWNGHHAC 270

[Close]

BLAST of Sed0015139 vs. ExPASy TrEMBL
Match: A0A6J1IU95 (probable E3 ubiquitin-protein ligase ARI5 OS=Cucurbita maxima OX=3661 GN=LOC111479983 PE=3 SV=1)

HSP 1 Score: 296.6 bits (758), Expect = 9.9e-77
Identity = 145/241 (60.17%), Postives = 167/241 (69.29%), Query Frame = 0


Query: 19  LDDEELAEQLQLEEAILASMIAMEDNN--------SSETMCCTICMDTKSVDEMFTIEGC 78
           + DE  AE+LQL+E+I +S  +   +N        S     CTIC DTKS  EMFT  GC
Sbjct: 32  ISDEIFAEELQLQESIASSFTSTIMSNKPSPNPESSGSKTLCTICTDTKSASEMFTSTGC 91

Query: 79  SHSFCADCISHHIAAKLEDHAAVKCPEPKCTVVLEPGMWEFLVSKEVLEWWGDALLEAML 138
           SH+FCADCIS HIAAKL D  AVKCPEPKC  VL+P M +  V KEVLE WGDALL+AML
Sbjct: 92  SHTFCADCISKHIAAKLVDSLAVKCPEPKCAAVLKPEMCDSFVPKEVLERWGDALLKAML 151

Query: 139 VKTKRIYCPFEECSGVMVDDGEEAAREAECPSCWRMFCARCEVGWHEDMECEEFEKLRKE 198
           +K K +YCPF++CS  MVD  EE     ECP CWRMFCA+C VGWH DM C EF++L K 
Sbjct: 152 LKWKMVYCPFKDCSAGMVD--EEDREAVECPKCWRMFCAKCGVGWHADMNCTEFQRLLKN 211

Query: 199 LGGGDREDVLTLKLAGSNKWKRCSQCNIYVDKIEGCSHITCMCGSEFCYSCGSKWTSGHA 252
            GG DRE+ +T+KLA   KWKRC  C I V+KI GC HITC CGSEFCYSCG KW   HA
Sbjct: 212 -GGVDREEEMTMKLADERKWKRCPHCKILVEKILGCLHITCRCGSEFCYSCGGKWNDRHA 269

[Close]

BLAST of Sed0015139 vs. ExPASy TrEMBL
Match: A0A0A0L952 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G646570 PE=3 SV=1)

HSP 1 Score: 282.0 bits (720), Expect = 2.5e-72
Identity = 132/241 (54.77%), Postives = 167/241 (69.29%), Query Frame = 0


Query: 19  LDDEELAEQLQLEEAILASMIAMEDN------NSSETMCCTICMDTKSVDEMFTIEGCSH 78
           L DE  AE+LQL+E I +S+++   N      +S+  + C+IC D KS  +MFT   C+H
Sbjct: 17  LSDENYAEELQLQEVITSSLLSSPINPSPTPHSSTSQLLCSICTDAKSHSQMFTNRVCTH 76

Query: 79  SFCADCISHHIAAKLEDHAAVKCPEPKCTVVLEPGMWEFLVSKEVLEWWGDALLEAMLVK 138
           +FC  CIS+HIAAKLE   AVKCPEP C  VLEP M    V K VLE W DAL EAM++K
Sbjct: 77  TFCTACISNHIAAKLEVAMAVKCPEPNCGTVLEPEMCGSFVPKRVLERWADALFEAMILK 136

Query: 139 TKRIYCPFEECSGVMVDD-GEEAAREAECPSCWRMFCARCEVGWHEDMECEEFEKLRKEL 198
            KR+ CPF++C   ++D+ GEE     EC SCWR+FCA C VGWH +MEC EF++LRKE 
Sbjct: 137 WKRLNCPFKDCGAAIIDEGGEEGVTAVECGSCWRLFCAECRVGWHGEMECGEFQRLRKEA 196

Query: 199 G-GGDREDVLTLKLAGSNKWKRCSQCNIYVDKIEGCSHITCMCGSEFCYSCGSKWTSGHA 252
           G  GD++D +T+KLA + KW+RC  C IYV+K  GC HI C CGS+FCYSCG+KW  GHA
Sbjct: 197 GVSGDKDDAMTVKLAENKKWRRCPHCKIYVEKTVGCVHIVCRCGSDFCYSCGAKWGGGHA 256

[Close]

BLAST of Sed0015139 vs. ExPASy TrEMBL
Match: A0A5A7UED3 (E3 ubiquitin-protein ligase RNF144B-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold522G00700 PE=3 SV=1)

HSP 1 Score: 280.0 bits (715), Expect = 9.6e-72
Identity = 132/245 (53.88%), Postives = 166/245 (67.76%), Query Frame = 0


Query: 19  LDDEELAEQLQLEEAILASMI----------AMEDNNSSETMCCTICMDTKSVDEMFTIE 78
           L DE  AE+LQL+E I +S++          +   ++S+  + C+IC D KS  +MFT  
Sbjct: 13  LSDENYAEELQLQEVITSSLLSPPIKIPIHPSPTPHSSTSQVLCSICTDAKSHSQMFTNR 72

Query: 79  GCSHSFCADCISHHIAAKLEDHAAVKCPEPKCTVVLEPGMWEFLVSKEVLEWWGDALLEA 138
            C+H+FC DCIS HIAAKLE   AVKCPEP C  VLEP M    V K VLE W DAL EA
Sbjct: 73  VCTHTFCTDCISKHIAAKLEVTMAVKCPEPNCGTVLEPEMCGSFVPKRVLERWADALFEA 132

Query: 139 MLVKTKRIYCPFEECSGVMVDDG-EEAAREAECPSCWRMFCARCEVGWHEDMECEEFEKL 198
           M++K+KR+ CPF++C   M+D+G EE     EC SCWR+FCA C VGWH +M+C EF++L
Sbjct: 133 MILKSKRLNCPFKDCGAAMIDEGDEEGVTAVECGSCWRLFCAECRVGWHGEMKCGEFQRL 192

Query: 199 RKELG-GGDREDVLTLKLAGSNKWKRCSQCNIYVDKIEGCSHITCMCGSEFCYSCGSKWT 252
           RKE G  GD++D +T+KLA + KW+RC  C IYV+K  GC HI C CGSEFCYSCG KW 
Sbjct: 193 RKEAGVSGDKDDAMTVKLAENKKWRRCPHCKIYVEKTVGCVHILCRCGSEFCYSCGGKWG 252

[Close]

BLAST of Sed0015139 vs. ExPASy TrEMBL
Match: A0A1S3CDI0 (E3 ubiquitin-protein ligase RNF144B-like OS=Cucumis melo OX=3656 GN=LOC103499194 PE=3 SV=1)

HSP 1 Score: 280.0 bits (715), Expect = 9.6e-72
Identity = 132/245 (53.88%), Postives = 166/245 (67.76%), Query Frame = 0


Query: 19  LDDEELAEQLQLEEAILASMI----------AMEDNNSSETMCCTICMDTKSVDEMFTIE 78
           L DE  AE+LQL+E I +S++          +   ++S+  + C+IC D KS  +MFT  
Sbjct: 13  LSDENYAEELQLQEVITSSLLSPPIKIPIHPSPTPHSSTSQVLCSICTDAKSHSQMFTNR 72

Query: 79  GCSHSFCADCISHHIAAKLEDHAAVKCPEPKCTVVLEPGMWEFLVSKEVLEWWGDALLEA 138
            C+H+FC DCIS HIAAKLE   AVKCPEP C  VLEP M    V K VLE W DAL EA
Sbjct: 73  VCTHTFCTDCISKHIAAKLEVTMAVKCPEPNCGTVLEPEMCGSFVPKRVLERWADALFEA 132

Query: 139 MLVKTKRIYCPFEECSGVMVDDG-EEAAREAECPSCWRMFCARCEVGWHEDMECEEFEKL 198
           M++K+KR+ CPF++C   M+D+G EE     EC SCWR+FCA C VGWH +M+C EF++L
Sbjct: 133 MILKSKRLNCPFKDCGAAMIDEGDEEGVTAVECGSCWRLFCAECRVGWHGEMKCGEFQRL 192

Query: 199 RKELG-GGDREDVLTLKLAGSNKWKRCSQCNIYVDKIEGCSHITCMCGSEFCYSCGSKWT 252
           RKE G  GD++D +T+KLA + KW+RC  C IYV+K  GC HI C CGSEFCYSCG KW 
Sbjct: 193 RKEAGVSGDKDDAMTVKLAENKKWRRCPHCKIYVEKTVGCVHILCRCGSEFCYSCGGKWG 252

[Close]

BLAST of Sed0015139 vs. TAIR 10
Match: AT3G53690.1 (RING/U-box superfamily protein )

HSP 1 Score: 201.8 bits (512), Expect = 6.4e-52
Identity = 88/202 (43.56%), Postives = 133/202 (65.84%), Query Frame = 0


Query: 44  NNSSETMCCTICMDTKSVDEMFTIEGCSHSFCADCISHHIAAKLEDH-AAVKCPEPKCTV 103
           ++ + T  C IC+D+KS+ E F I GCSH +C DC+S +IAAKL+D+  +++CP   C+ 
Sbjct: 107 SSKTATFDCEICVDSKSIIESFRIGGCSHFYCNDCVSKYIAAKLQDNILSIECPVSGCSG 166

Query: 104 VLEPGMWEFLVSKEVLEWWGDALLEAMLVKTKRIYCPFEECSG-VMVDDGEEAAREAECP 163
            LEP     ++ KEV + WGDAL EA+++++K+ YCP+++CS  V +++ E   +++ECP
Sbjct: 167 RLEPDQCRQILPKEVFDRWGDALCEAVVMRSKKFYCPYKDCSALVFLEESEVKMKDSECP 226

Query: 164 SCWRMFCARCEVGWHEDMECEEFEKLRKELGGGDREDVLTLKLAGSNKWKRCSQCNIYVD 223
            C RM C  C   WH +M CEEF+KL     G  R+D+L   +A   KWKRC  C  Y++
Sbjct: 227 HCHRMVCVECGTQWHPEMTCEEFQKLAANERG--RDDILLATMAKQKKWKRCPSCKFYIE 286

Query: 224 KIEGCSHITCMCGSEFCYSCGS 244
           K +GC ++ C CG  FCY+CG+
Sbjct: 287 KSQGCLYMKCRCGLAFCYNCGT 306

[Close]

BLAST of Sed0015139 vs. TAIR 10
Match: AT3G14250.1 (RING/U-box superfamily protein )

HSP 1 Score: 196.8 bits (499), Expect = 2.1e-50
Identity = 82/205 (40.00%), Postives = 131/205 (63.90%), Query Frame = 0


Query: 52  CTICMDTKSVDEMFT-IEGCSHSFCADCISHHIAAKLEDHAA-VKCPEPKCTVVLEPGMW 111
           C ICMD K   ++F     C+H++C DC   ++A K++++A+ +KCP+ +CT ++EP   
Sbjct: 95  CMICMDEKPSSDIFRGTTNCTHAYCTDCTVRYVATKIKENASRIKCPDVECTRLIEPYTC 154

Query: 112 EFLVSKEVLEWWGDALLEAMLVKTKRIYCPFEECSGVMV--DDGEEAAREAECPSCWRMF 171
             L+ K+V + W   L E+++    + YCPF++CS +MV  ++G+    + EC SC R+F
Sbjct: 155 RDLIPKDVFDRWEKILCESLISSWDKFYCPFKDCSAMMVNNENGDANVTQTECRSCHRLF 214

Query: 172 CARCEVGWHEDMECEEFEKL-RKELGGGDREDVLTLKLAGSNKWKRCSQCNIYVDKIEGC 231
           C +C+V WH  + C+EF++    +    D +D L +++A + +W+RC  C  YVDK+EGC
Sbjct: 215 CVQCKVTWHAGIGCDEFQRFGNTKKKSSDEDDALLIQMAKNKQWRRCPSCKFYVDKVEGC 274

Query: 232 SHITCMCGSEFCYSCGSKWTSGHAC 252
            HI C CG +FCY CGS W+S HAC
Sbjct: 275 QHIKCRCGYQFCYGCGSVWSSSHAC 299

[Close]

BLAST of Sed0015139 vs. TAIR 10
Match: AT5G60250.1 (zinc finger (C3HC4-type RING finger) family protein )

HSP 1 Score: 143.7 bits (361), Expect = 2.1e-34
Identity = 73/228 (32.02%), Postives = 114/228 (50.00%), Query Frame = 0


Query: 32  EAILASMIAMEDNNSSETMC---CTICMDTKSVDEMFTIEGCSHSFCADCISHHIAAKLE 91
           E+IL+ +   ED   ++ +    C IC +    + MF+++ C H FC  C+  H+  KL 
Sbjct: 278 ESILSMVTPHEDPRQAKAVLKEECAICFNDIVAEGMFSVDKCRHRFCFQCVKQHVEVKLL 337

Query: 92  DHAAVKCPEPKCTVVLEPGMWEFLVSKEVLEWWGDALLEAMLVKTKRIYCPFEECSGVMV 151
              A KCP   C   L       L++ ++ + W   L E  +  T+R+YCP+  CS +M 
Sbjct: 338 HGMAPKCPHDGCKSELVIDACGKLLTPKLSKLWQQRLQENAIPVTERVYCPYPRCSALMS 397

Query: 152 DDG-EEAARE----------AECPSCWRMFCARCEVGWHEDMECEEFEKLRKELGGGDRE 211
                E+A+             C  C  +FC  C+V WH ++ C E++KL  E      +
Sbjct: 398 KTKISESAKSLLSLYPKSGVRRCVECRGLFCVDCKVPWHGNLSCTEYKKLHPE---PPAD 457

Query: 212 DVLTLKLAGSNKWKRCSQCNIYVDKIEGCSHITCMCGSEFCYSCGSKW 246
           DV    LA +  W++C +C   ++  +GC+HITC CG EFCY+CG  W
Sbjct: 458 DVKLKSLANNKMWRQCGKCQHMIELSQGCNHITCRCGHEFCYNCGGGW 502

[Close]

BLAST of Sed0015139 vs. TAIR 10
Match: AT5G37560.1 (RING/U-box superfamily protein )

HSP 1 Score: 143.3 bits (360), Expect = 2.7e-34
Identity = 69/223 (30.94%), Postives = 110/223 (49.33%), Query Frame = 0


Query: 33  AILASMIAMEDNNSSETMCCTICMDTKSVDEMFTIEGCSHSFCADCISHHIAAKLEDHAA 92
           A+  ++ A+      + + C+IC D    + M   + C H  C  C+   +  KL     
Sbjct: 162 ALRLAIDALVKATQEKPLTCSICSDKTDAEHMLLNDKCLHRHCFSCVKQQVKVKLRSGIV 221

Query: 93  VKCPEPKCTVVLEPGMWEFLVSKEVLEWWGDALLEAMLVKTKRIYCPFEECSGVMVDDGE 152
             C E  C   L       +++ +++E W   + E ++   ++IYCP+  CS  M+    
Sbjct: 222 PPCLEDGCKSELTLESCSMVLTPKLIEMWKRKMEEDLIPDAEKIYCPYRSCS--MLMSKT 281

Query: 153 EAAREAE------CPSCWRMFCARCEVGWHEDMECEEFEKLRKELGGGDREDVLTLKLAG 212
           E +REAE      C  C  +FC  C+V WH D+ C +++++  E       D++   LA 
Sbjct: 282 ELSREAEQSNVRACIKCSELFCIDCKVPWHSDLSCADYKRIHSE---RLVNDMMLKVLAN 341

Query: 213 SNKWKRCSQCNIYVDKIEGCSHITCMCGSEFCYSCGSKWTSGH 250
              W++CS+C   ++  EGC+HITC CG EFCY CG KWT  H
Sbjct: 342 DQMWRQCSECKHMIELTEGCNHITCRCGYEFCYRCGHKWTKYH 379

[Close]

BLAST of Sed0015139 vs. TAIR 10
Match: AT2G26135.1 (RING/U-box protein with C6HC-type zinc finger )

HSP 1 Score: 137.1 bits (344), Expect = 1.9e-32
Identity = 63/195 (32.31%), Postives = 101/195 (51.79%), Query Frame = 0


Query: 52  CTICMDTK-SVDEMFTIEGCSHSFCADCISHHIAAKLEDHAAVKCPEPKCTVVLEPGMWE 111
           CTIC D   + D MF I+ C H FC++C+  HI   L   + + CP  +C   L  G   
Sbjct: 153 CTICFDDDINADMMFYIDQCGHMFCSECVKRHIEVSLLQGSLITCPSYRCKSKLTYGSCV 212

Query: 112 FLVSKEVLEWWGDALLEAMLVKTKRIYCPFEECSGVM--VDDGEEAAREAECPSCWRMFC 171
            +++ +V E W   + E  +  T R+YCP   CS +M   +  +    +  C  C   FC
Sbjct: 213 NILTPKVKEMWIQRMGEDSIPVTDRVYCPNPTCSALMSVTELDQLTGSKRCCVKCGESFC 272

Query: 172 ARCEVGWHEDMECEEFEKLRKELGGGDREDVLTLKLAGSNKWKRCSQCNIYVDKIEGCSH 231
            +C+V WH+++ C+ ++KL       D++     +LA    W++CS+C   ++  +GC  
Sbjct: 273 IKCKVPWHDNLSCKRYKKLHSNRTTNDKQ---LNELANQESWRQCSKCKHMIELTQGCVR 332

Query: 232 ITCMCGSEFCYSCGS 244
           + C CG EFCY CG+
Sbjct: 333 VICRCGHEFCYGCGA 344

The following BLAST results are available for this feature:

BLAST of Sed0015139 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022956145.1	4.9e-78	57.74	probable E3 ubiquitin-protein ligase ARI10 [Cucurbita moschata]	[more]
XP_022980686.1	2.0e-76	60.17	probable E3 ubiquitin-protein ligase ARI5 [Cucurbita maxima]	[more]
XP_023527456.1	3.0e-75	65.07	probable E3 ubiquitin-protein ligase rbrA [Cucurbita pepo subsp. pepo] >XP_02352...	[more]
XP_038889081.1	5.2e-72	56.02	probable E3 ubiquitin-protein ligase RNF144A-A [Benincasa hispida]	[more]
XP_004144476.2	5.2e-72	54.77	probable E3 ubiquitin-protein ligase RNF144A [Cucumis sativus] >KGN58470.1 hypot...	[more]

BLAST of Sed0015139 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P0CE10	1.0e-17	26.34	ATP-dependent RNA helicase DEAH11, chloroplastic OS=Arabidopsis thaliana OX=3702...	[more]
F4KGU4	2.2e-17	26.34	ATP-dependent RNA helicase DEAH12, chloroplastic OS=Arabidopsis thaliana OX=3702...	[more]
Q4KLT0	1.9e-16	25.00	Probable E3 ubiquitin-protein ligase RNF217 OS=Xenopus laevis OX=8355 GN=rnf217 ...	[more]
Q8TC41	4.2e-16	24.27	Probable E3 ubiquitin-protein ligase RNF217 OS=Homo sapiens OX=9606 GN=RNF217 PE...	[more]
D3YYI7	5.5e-16	23.79	Probable E3 ubiquitin-protein ligase RNF217 OS=Mus musculus OX=10090 GN=Rnf217 P...	[more]

BLAST of Sed0015139 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GX07	2.4e-78	57.74	probable E3 ubiquitin-protein ligase ARI10 OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]
A0A6J1IU95	9.9e-77	60.17	probable E3 ubiquitin-protein ligase ARI5 OS=Cucurbita maxima OX=3661 GN=LOC1114...	[more]
A0A0A0L952	2.5e-72	54.77	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G646570 PE=3 SV=1	[more]
A0A5A7UED3	9.6e-72	53.88	E3 ubiquitin-protein ligase RNF144B-like protein OS=Cucumis melo var. makuwa OX=...	[more]
A0A1S3CDI0	9.6e-72	53.88	E3 ubiquitin-protein ligase RNF144B-like OS=Cucumis melo OX=3656 GN=LOC103499194...	[more]

BLAST of Sed0015139 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G53690.1	6.4e-52	43.56	RING/U-box superfamily protein	[more]
AT3G14250.1	2.1e-50	40.00	RING/U-box superfamily protein	[more]
AT5G60250.1	2.1e-34	32.02	zinc finger (C3HC4-type RING finger) family protein	[more]
AT5G37560.1	2.7e-34	30.94	RING/U-box superfamily protein	[more]
AT2G26135.1	1.9e-32	32.31	RING/U-box protein with C6HC-type zinc finger	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002867	IBR domain	SMART	SM00647	ibrneu5	coord: 119..181 e-value: 3.3E-10 score: 49.9 coord: 195..251 e-value: 0.19 score: 9.8
IPR002867	IBR domain	PFAM	PF01485	IBR	coord: 128..181 e-value: 3.8E-10 score: 39.8 coord: 207..251 e-value: 2.5E-6 score: 27.6
IPR018957	Zinc finger, C3HC4 RING-type	PFAM	PF00097	zf-C3HC4	coord: 52..97 e-value: 8.6E-5 score: 22.3
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 45..133 e-value: 7.3E-20 score: 72.7
None	No IPR available	GENE3D	1.20.120.1750		coord: 179..252 e-value: 4.8E-14 score: 54.8
None	No IPR available	PANTHER	PTHR11685:SF350	RBR-TYPE E3 UBIQUITIN TRANSFERASE	coord: 40..246
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 199..251
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 46..128
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 120..186
IPR031127	E3 ubiquitin ligase RBR family	PANTHER	PTHR11685	RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING	coord: 40..246
IPR017907	Zinc finger, RING-type, conserved site	PROSITE	PS00518	ZF_RING_1	coord: 70..79
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 52..99 score: 10.33534
IPR044066	TRIAD supradomain	PROSITE	PS51873	TRIAD	coord: 48..252 score: 26.769781

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0015139.1	Sed0015139.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032436	positive regulation of proteasomal ubiquitin-dependent protein catabolic process
biological_process	GO:0000209	protein polyubiquitination
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0000151	ubiquitin ligase complex
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0031624	ubiquitin conjugating enzyme binding
molecular_function	GO:0061630	ubiquitin protein ligase activity
molecular_function	GO:0004842	ubiquitin-protein transferase activity