Sed0015087 (gene) Chayote v1

Overview
NameSed0015087
Typegene
OrganismSechium edule (Chayote v1)
DescriptionMajor viral transcription factor
LocationLG01: 6212436 .. 6212807 (+)
RNA-Seq ExpressionSed0015087
SyntenySed0015087
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAACGATCACAAGGCCAAATTACCTAAGCCTCCGACGAGGTTACAGAAGCGAGCGCCGGCGGGTCTTCACCTCGATCAAATCTCAAGCGTCTCGATGTTTTCCGGTGGTTCCGATCCTTCTCCCAAGGCGATTCTTCCTCTGCTATCGCCGCTCCCTTTGTCGCCGTTACCTTTACCTGAAACTGAGGGGGATGGAGCATCGGCGAACGGAAACGCCGCGGGCGGCGGCGGCGGCGACGAAAGAGGTGTAGGGTTTTTCACTCCTGGTGTCTGGCAACATCCGGCGGTGGCAACGACATTCGCGGATCCTTCAACTCTGTTCACTTTTTTTCAATCGCAGTGCGTTGTAAGCAGTAACACGCCATGA

mRNA sequence

ATGGAGAACGATCACAAGGCCAAATTACCTAAGCCTCCGACGAGGTTACAGAAGCGAGCGCCGGCGGGTCTTCACCTCGATCAAATCTCAAGCGTCTCGATGTTTTCCGGTGGTTCCGATCCTTCTCCCAAGGCGATTCTTCCTCTGCTATCGCCGCTCCCTTTGTCGCCGTTACCTTTACCTGAAACTGAGGGGGATGGAGCATCGGCGAACGGAAACGCCGCGGGCGGCGGCGGCGGCGACGAAAGAGGTGTAGGGTTTTTCACTCCTGGTGTCTGGCAACATCCGGCGGTGGCAACGACATTCGCGGATCCTTCAACTCTGTTCACTTTTTTTCAATCGCAGTGCGTTGTAAGCAGTAACACGCCATGA

Coding sequence (CDS)

ATGGAGAACGATCACAAGGCCAAATTACCTAAGCCTCCGACGAGGTTACAGAAGCGAGCGCCGGCGGGTCTTCACCTCGATCAAATCTCAAGCGTCTCGATGTTTTCCGGTGGTTCCGATCCTTCTCCCAAGGCGATTCTTCCTCTGCTATCGCCGCTCCCTTTGTCGCCGTTACCTTTACCTGAAACTGAGGGGGATGGAGCATCGGCGAACGGAAACGCCGCGGGCGGCGGCGGCGGCGACGAAAGAGGTGTAGGGTTTTTCACTCCTGGTGTCTGGCAACATCCGGCGGTGGCAACGACATTCGCGGATCCTTCAACTCTGTTCACTTTTTTTCAATCGCAGTGCGTTGTAAGCAGTAACACGCCATGA

Protein sequence

MENDHKAKLPKPPTRLQKRAPAGLHLDQISSVSMFSGGSDPSPKAILPLLSPLPLSPLPLPETEGDGASANGNAAGGGGGDERGVGFFTPGVWQHPAVATTFADPSTLFTFFQSQCVVSSNTP
Homology
BLAST of Sed0015087 vs. NCBI nr
Match: XP_038902307.1 (uncharacterized protein LOC120088941 [Benincasa hispida])

HSP 1 Score: 189.9 bits (481), Expect = 1.3e-44
Identity = 96/125 (76.80%), Postives = 107/125 (85.60%), Query Frame = 0

Query: 1   MENDHKAKLPKPPTRLQKRAPAGLHLDQISSVSMFSGGSDPSPKAILPLLSPLPLSPLPL 60
           MEN+HKA+LPKPPTRLQK+APA LHLDQ+SSVSM SG +D   KAILPLLSPLPLSP PL
Sbjct: 16  MENEHKARLPKPPTRLQKQAPASLHLDQLSSVSMSSGSADTCSKAILPLLSPLPLSPQPL 75

Query: 61  PETEGDGASANGNAA--GGGGGDERGVGFFTPGVWQHPAVATTFADPSTLFTFFQSQCVV 120
           PE +G+  SANGNAA  GGG GD+RG+GF  PG WQHPAVA TF DPSTLFTFFQSQC+V
Sbjct: 76  PEIDGNRISANGNAADGGGGNGDQRGIGFAAPGGWQHPAVAATFPDPSTLFTFFQSQCIV 135

Query: 121 SSNTP 124
           +SNTP
Sbjct: 136 TSNTP 140

BLAST of Sed0015087 vs. NCBI nr
Match: XP_011657141.1 (uncharacterized protein LOC105435808 [Cucumis sativus] >XP_031742438.1 uncharacterized protein LOC116404357 [Cucumis sativus] >KAE8645882.1 hypothetical protein Csa_017707 [Cucumis sativus])

HSP 1 Score: 181.8 bits (460), Expect = 3.6e-42
Identity = 93/125 (74.40%), Postives = 104/125 (83.20%), Query Frame = 0

Query: 1   MENDHKAKLPKPPTRLQKRAPAGLHLDQISSVSMFSGGSDPSPKAILPLLSPLPLSPLPL 60
           MEN++K +LPKPPTRLQK+APA LHLDQ+SSVSM S  +D   KAILPLLSPLPLSP PL
Sbjct: 16  MENEYKPRLPKPPTRLQKQAPASLHLDQLSSVSMSSASNDICSKAILPLLSPLPLSPQPL 75

Query: 61  PETEGDGASANGNA--AGGGGGDERGVGFFTPGVWQHPAVATTFADPSTLFTFFQSQCVV 120
           PE +G+  SANGNA   GGG GD+RG+GF  PG WQHPAVA TF DPSTLFTFFQSQC+V
Sbjct: 76  PEIDGNRISANGNAVDGGGGNGDQRGIGFVAPGGWQHPAVAATFPDPSTLFTFFQSQCMV 135

Query: 121 SSNTP 124
           SSNTP
Sbjct: 136 SSNTP 140

BLAST of Sed0015087 vs. NCBI nr
Match: KAG6605440.1 (hypothetical protein SDJN03_02757, partial [Cucurbita argyrosperma subsp. sororia] >KAG7035388.1 hypothetical protein SDJN02_02184, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 180.6 bits (457), Expect = 8.0e-42
Identity = 90/123 (73.17%), Postives = 103/123 (83.74%), Query Frame = 0

Query: 1   MENDHKAKLPKPPTRLQKRAPAGLHLDQISSVSMFSGGSDPSPKAILPLLSPLPLSPLPL 60
           ME +HK++LPKPPTRLQK+APA LHLDQ++SVSM SG +D S KAILPLLSPLP SP P 
Sbjct: 16  MEKEHKSRLPKPPTRLQKQAPASLHLDQLTSVSMSSGSADISSKAILPLLSPLPSSPQPF 75

Query: 61  PETEGDGASANGNAAGGGGGDERGVGFFTPGVWQHPAVATTFADPSTLFTFFQSQCVVSS 120
           PETEG+  +ANGN   GG GD+RG+ F  PG WQHPAVATTFADPSTLFTFFQSQC+V+S
Sbjct: 76  PETEGNRRAANGNTVDGGYGDQRGICFAPPGGWQHPAVATTFADPSTLFTFFQSQCIVNS 135

Query: 121 NTP 124
            TP
Sbjct: 136 KTP 138

BLAST of Sed0015087 vs. NCBI nr
Match: KAA0061869.1 (uncharacterized protein E6C27_scaffold89G001110 [Cucumis melo var. makuwa] >TYK15387.1 uncharacterized protein E5676_scaffold571G00270 [Cucumis melo var. makuwa])

HSP 1 Score: 178.7 bits (452), Expect = 3.0e-41
Identity = 92/125 (73.60%), Postives = 102/125 (81.60%), Query Frame = 0

Query: 1   MENDHKAKLPKPPTRLQKRAPAGLHLDQISSVSMFSGGSDPSPKAILPLLSPLPLSPLPL 60
           MEN+ K +LPKPPTRLQK+APA LHLDQ+SSVSM S  +D   KAILPLLSPLPLSP PL
Sbjct: 1   MENELKPRLPKPPTRLQKQAPASLHLDQLSSVSMSSASNDTYSKAILPLLSPLPLSPQPL 60

Query: 61  PETEGDGASANGNA--AGGGGGDERGVGFFTPGVWQHPAVATTFADPSTLFTFFQSQCVV 120
           PE +G+  SA GNA   GGG GD+RG+GF  PG WQHPAVA TF DPSTLFTFFQSQC+V
Sbjct: 61  PEIDGNRISATGNAVEGGGGNGDQRGIGFVAPGGWQHPAVAATFPDPSTLFTFFQSQCIV 120

Query: 121 SSNTP 124
           SSNTP
Sbjct: 121 SSNTP 125

BLAST of Sed0015087 vs. NCBI nr
Match: KAG6570684.1 (hypothetical protein SDJN03_29599, partial [Cucurbita argyrosperma subsp. sororia] >KAG7010531.1 hypothetical protein SDJN02_27325, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 162.5 bits (410), Expect = 2.2e-36
Identity = 81/124 (65.32%), Postives = 100/124 (80.65%), Query Frame = 0

Query: 1   MENDHKAKLPKPPTRLQKRAPAGLHLDQISSVSMFSGGSDPSPKAILPLLSPLPLSPLPL 60
           M+ND   ++PKPPTRLQK+APAGL+LDQ+SSVSM S G++   K +LPLLSPLP SP P 
Sbjct: 16  MDNDRGGRIPKPPTRLQKQAPAGLYLDQLSSVSMPSVGTETYSKTVLPLLSPLPSSPQPF 75

Query: 61  PETEGDGASANGNAA-GGGGGDERGVGFFTPGVWQHPAVATTFADPSTLFTFFQSQCVVS 120
           PETEG+   ANGN    GG GD+RG+ F +PG WQHPAVA T+ADPSTLFTFFQS+C+++
Sbjct: 76  PETEGNRMLANGNGVNSGGNGDQRGIVFASPGGWQHPAVAATYADPSTLFTFFQSKCIIT 135

Query: 121 SNTP 124
           S+TP
Sbjct: 136 SSTP 139

BLAST of Sed0015087 vs. ExPASy TrEMBL
Match: A0A0A0KBQ7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G188670 PE=4 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 1.7e-42
Identity = 93/125 (74.40%), Postives = 104/125 (83.20%), Query Frame = 0

Query: 1   MENDHKAKLPKPPTRLQKRAPAGLHLDQISSVSMFSGGSDPSPKAILPLLSPLPLSPLPL 60
           MEN++K +LPKPPTRLQK+APA LHLDQ+SSVSM S  +D   KAILPLLSPLPLSP PL
Sbjct: 16  MENEYKPRLPKPPTRLQKQAPASLHLDQLSSVSMSSASNDICSKAILPLLSPLPLSPQPL 75

Query: 61  PETEGDGASANGNA--AGGGGGDERGVGFFTPGVWQHPAVATTFADPSTLFTFFQSQCVV 120
           PE +G+  SANGNA   GGG GD+RG+GF  PG WQHPAVA TF DPSTLFTFFQSQC+V
Sbjct: 76  PEIDGNRISANGNAVDGGGGNGDQRGIGFVAPGGWQHPAVAATFPDPSTLFTFFQSQCMV 135

Query: 121 SSNTP 124
           SSNTP
Sbjct: 136 SSNTP 140

BLAST of Sed0015087 vs. ExPASy TrEMBL
Match: A0A5A7V856 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold571G00270 PE=4 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 1.5e-41
Identity = 92/125 (73.60%), Postives = 102/125 (81.60%), Query Frame = 0

Query: 1   MENDHKAKLPKPPTRLQKRAPAGLHLDQISSVSMFSGGSDPSPKAILPLLSPLPLSPLPL 60
           MEN+ K +LPKPPTRLQK+APA LHLDQ+SSVSM S  +D   KAILPLLSPLPLSP PL
Sbjct: 1   MENELKPRLPKPPTRLQKQAPASLHLDQLSSVSMSSASNDTYSKAILPLLSPLPLSPQPL 60

Query: 61  PETEGDGASANGNA--AGGGGGDERGVGFFTPGVWQHPAVATTFADPSTLFTFFQSQCVV 120
           PE +G+  SA GNA   GGG GD+RG+GF  PG WQHPAVA TF DPSTLFTFFQSQC+V
Sbjct: 61  PEIDGNRISATGNAVEGGGGNGDQRGIGFVAPGGWQHPAVAATFPDPSTLFTFFQSQCIV 120

Query: 121 SSNTP 124
           SSNTP
Sbjct: 121 SSNTP 125

BLAST of Sed0015087 vs. ExPASy TrEMBL
Match: A0A6J1D5B7 (uncharacterized protein LOC111017071 OS=Momordica charantia OX=3673 GN=LOC111017071 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 2.3e-18
Identity = 59/90 (65.56%), Postives = 69/90 (76.67%), Query Frame = 0

Query: 1   MENDHKAK--LPKPPTRLQKRAPAGLHLDQISSVSMFSGGSDPSPKAILPLLSPLPLSPL 60
           ME +HKAK  +PKPPTRLQK+APA LHLDQ+SS SM  GG++ S KAILPLLSPLPLSP 
Sbjct: 16  MEKEHKAKSRIPKPPTRLQKQAPASLHLDQVSSTSMAPGGAETSSKAILPLLSPLPLSPQ 75

Query: 61  PLPETEGDG----ASANGNAAGGGGGDERG 85
           P PETE +     ++AN NA   GGGD+RG
Sbjct: 76  PWPETEENNTNRVSAANENAV-DGGGDQRG 104

BLAST of Sed0015087 vs. ExPASy TrEMBL
Match: A0A6P3ZH11 (uncharacterized protein LOC107411018 OS=Ziziphus jujuba OX=326968 GN=LOC107411018 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 2.2e-13
Identity = 60/117 (51.28%), Postives = 73/117 (62.39%), Query Frame = 0

Query: 6   KAKLPKPPTRLQKRAPAGLHLDQISSVSMFSGGSDPSPKAILPLLSPLPLSPLPLP---E 65
           +AK  KPPTRLQK+APA L LDQ+ + S  +   + + KAI PLLSPL LSP PLP   E
Sbjct: 9   EAKGWKPPTRLQKKAPASLKLDQVPT-SAANDSFNETSKAI-PLLSPLVLSPQPLPEMLE 68

Query: 66  TEGDGASANGNAAGGGGGDERGVGFFTPG-VWQHPAVATTFADPSTLFTFFQSQCVV 119
               G +A+ +       D+R      P   WQHPAV TTF DPS+LF FFQSQCV+
Sbjct: 69  KRRFGCAADQHDV----EDKRSEAVPLPADGWQHPAVPTTFTDPSSLFAFFQSQCVI 119

BLAST of Sed0015087 vs. ExPASy TrEMBL
Match: A0A2I4HGI9 (uncharacterized protein LOC109017360 OS=Juglans regia OX=51240 GN=LOC109017360 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 2.2e-13
Identity = 55/113 (48.67%), Postives = 68/113 (60.18%), Query Frame = 0

Query: 6   KAKLPKPPTRLQKRAPAGLHLDQISSVSMFSGGSDPSPKAILPLLSPLPLSPLPLPETEG 65
           K K+ KPPTRLQK APA L LD+ +     S  S  +PKAI P LSPL LSP PLPET  
Sbjct: 4   KPKVGKPPTRLQKHAPASLQLDKAAPAVDPSAVSGETPKAI-PFLSPLVLSPQPLPETVE 63

Query: 66  DGASANGNAAGGGGGDERGVGFFTPGVWQHPAVATTFADPSTLFTFFQSQCVV 119
             +  +G+      G+E      +PG WQHPA A   ADP+ L T FQS+C++
Sbjct: 64  KRSGESGSDDQKANGEEEKSEVLSPGGWQHPA-APALADPAALCTSFQSKCLL 114

BLAST of Sed0015087 vs. TAIR 10
Match: AT1G07473.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G07476.1); Has 22 Blast hits to 22 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 44.3 bits (103), Expect = 8.3e-05
Identity = 25/62 (40.32%), Postives = 33/62 (53.23%), Query Frame = 0

Query: 6  KAKLPKPPTRLQKRAPAGLHLDQISSVSMFSGGSDPSPKAILPLLSPLPLSPLPLPETEG 65
          K++ P+ PTRLQK+AP  LHL  +         SD      +PLLSPL +SP P      
Sbjct: 10 KSESPRSPTRLQKQAPTALHLGLVPENPFLQQSSDVVGTTAIPLLSPLFVSPSPHSSLSK 69

Query: 66 DG 68
          +G
Sbjct: 70 EG 71

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038902307.11.3e-4476.80uncharacterized protein LOC120088941 [Benincasa hispida][more]
XP_011657141.13.6e-4274.40uncharacterized protein LOC105435808 [Cucumis sativus] >XP_031742438.1 uncharact... [more]
KAG6605440.18.0e-4273.17hypothetical protein SDJN03_02757, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAA0061869.13.0e-4173.60uncharacterized protein E6C27_scaffold89G001110 [Cucumis melo var. makuwa] >TYK1... [more]
KAG6570684.12.2e-3665.32hypothetical protein SDJN03_29599, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KBQ71.7e-4274.40Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G188670 PE=4 SV=1[more]
A0A5A7V8561.5e-4173.60Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A6J1D5B72.3e-1865.56uncharacterized protein LOC111017071 OS=Momordica charantia OX=3673 GN=LOC111017... [more]
A0A6P3ZH112.2e-1351.28uncharacterized protein LOC107411018 OS=Ziziphus jujuba OX=326968 GN=LOC10741101... [more]
A0A2I4HGI92.2e-1348.67uncharacterized protein LOC109017360 OS=Juglans regia OX=51240 GN=LOC109017360 P... [more]
Match NameE-valueIdentityDescription
AT1G07473.18.3e-0540.32unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 55..88
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..23
NoneNo IPR availablePANTHERPTHR33912:SF5F22G5.17coord: 4..121
IPR040381Uncharacterized protein At4g14450-likePANTHERPTHR33912OS01G0939400 PROTEINcoord: 4..121

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0015087.1Sed0015087.1mRNA