Sed0015057 (gene) Chayote v1

Overview
NameSed0015057
Typegene
OrganismSechium edule (Chayote v1)
DescriptionUnknown protein
LocationLG09: 33677052 .. 33677450 (-)
RNA-Seq ExpressionSed0015057
SyntenySed0015057
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTGAATTATGATTTTTGTTTTGTTTTAGTCCCTCAACTTTCAGAAATCTAATTTTGGTTCTTGAACTTTTAAAAAAATTTAAAGGTAGTCCTTGAGTTAGAAAAAAAAAAACCACGATTAAAAATGACAAGGTGTCAATAAATTTATTATCATCTTCTTCTCCTCTCTCTTAATGCCTGTGGATTTCATATCGAAACAGGGTCTGGAAAAAAGGGGCTCAAGGAAATGGAGGAGAACAGGTTGAAGGGTATGAATCAAAAGTGGGCTTTGTTGCATACCGAAGAGGCAGAGCTTAAGGCAAGGAGGGCTGCGTTATTACAGCGCCAATTTGGAATTACACTTAAGTTTTCTATTCTGATTAGGGTTAACAATGTTCTTACCTATTTGAGAAAGTGAGC

mRNA sequence

CTTGAATTATGATTTTTGTTTTGTTTTAGTCCCTCAACTTTCAGAAATCTAATTTTGGTTCTTGAACTTTTAAAAAAATTTAAAGGTAGTCCTTGAGTTAGAAAAAAAAAAACCACGATTAAAAATGACAAGGTGTCAATAAATTTATTATCATCTTCTTCTCCTCTCTCTTAATGCCTGTGGATTTCATATCGAAACAGGGTCTGGAAAAAAGGGGCTCAAGGAAATGGAGGAGAACAGGTTGAAGGGTATGAATCAAAAGTGGGCTTTGTTGCATACCGAAGAGGCAGAGCTTAAGGCAAGGAGGGCTGCGTTATTACAGCGCCAATTTGGAATTACACTTAAGTTTTCTATTCTGATTAGGGTTAACAATGTTCTTACCTATTTGAGAAAGTGAGC

Coding sequence (CDS)

ATGGAGGAGAACAGGTTGAAGGGTATGAATCAAAAGTGGGCTTTGTTGCATACCGAAGAGGCAGAGCTTAAGGCAAGGAGGGCTGCGTTATTACAGCGCCAATTTGGAATTACACTTAAGTTTTCTATTCTGATTAGGGTTAACAATGTTCTTACCTATTTGAGAAAGTGA

Protein sequence

MEENRLKGMNQKWALLHTEEAELKARRAALLQRQFGITLKFSILIRVNNVLTYLRK
Homology
[Close]
BLAST of Sed0015057 vs. NCBI nr
Match: KAG6606028.1 (hypothetical protein SDJN03_03345, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 58.9 bits (141), Expect = 1.6e-05
Identity = 29/38 (76.32%), Postives = 31/38 (81.58%), Query Frame = 0 

Query: 1   MEENRLKGMNQKWALLHTEEAELKARRAALLQRQFGIT 39
           MEE  LKGMN+KW LLH EEAELKARR AL+QRQ G T
Sbjct: 176 MEEWSLKGMNEKWVLLHIEEAELKARRVALIQRQIGTT 213

[Close]
BLAST of Sed0015057 vs. NCBI nr
Match: KAG6570827.1 (hypothetical protein SDJN03_29742, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 53.9 bits (128), Expect = 5.1e-04
Identity = 26/34 (76.47%), Postives = 29/34 (85.29%), Query Frame = 0 

Query: 1   MEENRLKGMNQKWALLHTEEAELKARRAALLQRQ 35
           MEE  L+ MN+KW LLH EEAELKARRAALLQ+Q
Sbjct: 168 MEEKSLRDMNEKWVLLHIEEAELKARRAALLQKQ 201

The following BLAST results are available for this feature:
BLAST of Sed0015057 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6606028.11.6e-0576.32hypothetical protein SDJN03_03345, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6570827.15.1e-0476.47hypothetical protein SDJN03_29742, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Sed0015057 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Sed0015057 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Sed0015057 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0015057.1Sed0015057.1mRNA