Sed0015052 (gene) Chayote v1

Overview


Name	Sed0015052
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Retrotran_gag_3 domain-containing protein
Location	LG09: 28512027 .. 28513679 (-)
RNA-Seq Expression	Sed0015052
Synteny	Sed0015052

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCTACACCGGCTTCGTCATCTTCTACTTCTTTCTCAAATTCGTCCATTCATCTACTAACAAACATTTGCAATCTTGTATCTATGCGATTCGATTCGACCAAATTTGTATTATGGCGATTCCAAATCTCCCCACTGCTGAAAGCTCACAAGCTCTATGGCTATGTCGATGGAACCATATCTGCACCAAAAATCAGCGAAACATCTGAGACAATGACTACTGAAGAAAGAACTGCGTACGACCAATGGTTCGAAAGAGAACAAGCATTTATGACACTGCTCAATGCAACATTATCTCCAACAGCGCTTTCCTTAGCGAGAGGGTGTGAAACATCTAAAGATCTATGGGAAACCCTAGAAAAACAATTTTCATCTTCTACCCATACCTAGATTGTTGGTCTCAAGACTGATCTTCAAGGTATAATGAAGAAATCTGGAGAAACAATTGATTCCTACATTCAAAGAATTAAGAATTTGTATCATCGACTTGCTGCTGTTGAAGTTCTAATTGATCCGGAAGATTTGGTGATCTACACTGTTAATGGCCTTCCTTTGGCTTACAATGTCTTCAAGACCTCTATTCGCACTCGTTCACAGAGTATTTCATTATTTGAGTTGCATATTATGTTAAAATTTGAAGAAGCTGCCCTTGATGCTCAAAACAAGAAAGATGATTATGCAACACAATCTTTGGCAATGACTGAAAATTTTAATCGAGGGGGTAACTGGCGCGGTTCTGGTCGAGGTCGTGGCAGAGGTAATAATGGAAGAGGTCGAGGTTCATATTCGCAACAATCAAATTTCTCCTCTGGTTCTTCTTCTTCTTCTTCTTCGAACACACAAGGTTTTGGATCAAATACCTTTGGGAATCAGTCAGATCTTGCAGACCGACCAGTCAATCCTCCATGTCAAATCTGTAACAGAGAAGGACATAATGCCTTAGATTGTTACCACATAGGGAATTTCGCATATCAAGGAAAACAACCTTCAGCAAAGTTAGCAGCCATGGTAACATCTTCATACAGACAACCTCGTTTCCCTGCTCATACAAGTAATACTCAAGATTCTGGAATTTGGTTATATGACTCGGGCTGTAATATACATCTCTCTAGTGAACTAAGCAACTTCAACACAACCTCACCTTATTCCGGAGATGATAATGTAACAGTTGGCAACGACCAACCACCACAAATTTCCCATCAAGGCATTGGTATCCTCTCTACCCTCTCTCACTCCTTTGTCTTATCTAATCTTTTACGTGTCTCTCATATTAGCTCTAACTTTCTGTCTGTTCACCATCTTTGTGTTGATAATAACTGTCGAATTATTTTTTATGCAACACATTTCTTAATACAGGACAAAGCCACAAGCAAAACTCTCTATTATGGTCCAAGCAAGGATGGTATTTACCCAATCTATACTTCAAATTCTTTGCCTCCCTTCCCAAAAGCTAATATTAGTATTAAAGATTCGTCCAAACTTTGGCATGATAGATTAGGACACCCAAATGATGTTGTTCTAAAGAATTTTCTTAGTACTTTTTCTTCTCAAGTTTCTATAGATACTGAGTTTTGTAATGAATGTAAAAGTGGAAAAATGTGTAAGCAATTTTTTCCCATCTCTGTTTCTGTTTCTCACTCACCTTTAGAGTTGTTA

mRNA sequence

GCTACACCGGCTTCGTCATCTTCTACTTCTTTCTCAAATTCGTCCATTCATCTACTAACAAACATTTGCAATCTTGTATCTATGCGATTCGATTCGACCAAATTTGTATTATGGCGATTCCAAATCTCCCCACTGCTGAAAGCTCACAAGCTCTATGGCTATGTCGATGGAACCATATCTGCACCAAAAATCAGCGAAACATCTGAGACAATGACTACTGAAGAAAGAACTGCGTACGACCAATGGTTCGAAAGAGAACAAGCATTTATGACACTGCTCAATGCAACATTATCTCCAACAGCGCTTTCCTTAGCGAGAGGGTGTGAAACATCTAAAGATCTATGGGAAACCCTAGAAAAACAATTTTCATCTTCTACCCATACCTAGATTGTTGGTCTCAAGACTGATCTTCAAGGTATAATGAAGAAATCTGGAGAAACAATTGATTCCTACATTCAAAGAATTAAGAATTTGTATCATCGACTTGCTGCTGTTGAAGTTCTAATTGATCCGGAAGATTTGGTGATCTACACTGTTAATGGCCTTCCTTTGGCTTACAATGTCTTCAAGACCTCTATTCGCACTCGTTCACAGAGTATTTCATTATTTGAGTTGCATATTATGTTAAAATTTGAAGAAGCTGCCCTTGATGCTCAAAACAAGAAAGATGATTATGCAACACAATCTTTGGCAATGACTGAAAATTTTAATCGAGGGGGTAACTGGCGCGGTTCTGGTCGAGGTCGTGGCAGAGGTAATAATGGAAGAGGTCGAGGTTCATATTCGCAACAATCAAATTTCTCCTCTGGTTCTTCTTCTTCTTCTTCTTCGAACACACAAGGTTTTGGATCAAATACCTTTGGGAATCAGTCAGATCTTGCAGACCGACCAGTCAATCCTCCATGTCAAATCTGTAACAGAGAAGGACATAATGCCTTAGATTGTTACCACATAGGGAATTTCGCATATCAAGGAAAACAACCTTCAGCAAAGTTAGCAGCCATGGTAACATCTTCATACAGACAACCTCGTTTCCCTGCTCATACAAGTAATACTCAAGATTCTGGAATTTGGTTATATGACTCGGGCTGTAATATACATCTCTCTAGTGAACTAAGCAACTTCAACACAACCTCACCTTATTCCGGAGATGATAATGTAACAGTTGGCAACGACCAACCACCACAAATTTCCCATCAAGGCATTGGACAAAGCCACAAGCAAAACTCTCTATTATGGTCCAAGCAAGGATGGTATTTACCCAATCTATACTTCAAATTCTTTGCCTCCCTTCCCAAAAGCTAATATTAGTATTAAAGATTCGTCCAAACTTTGGCATGATAGATTAGGACACCCAAATGATGTTGTTCTAAAGAATTTTCTTAGTACTTTTTCTTCTCAAGTTTCTATAGATACTGAGTTTTGTAATGAATGTAAAAGTGGAAAAATGTGTAAGCAATTTTTTCCCATCTCTGTTTCTGTTTCTCACTCACCTTTAGAGTTGTTA

Coding sequence (CDS)

ATGAAGAAATCTGGAGAAACAATTGATTCCTACATTCAAAGAATTAAGAATTTGTATCATCGACTTGCTGCTGTTGAAGTTCTAATTGATCCGGAAGATTTGGTGATCTACACTGTTAATGGCCTTCCTTTGGCTTACAATGTCTTCAAGACCTCTATTCGCACTCGTTCACAGAGTATTTCATTATTTGAGTTGCATATTATGTTAAAATTTGAAGAAGCTGCCCTTGATGCTCAAAACAAGAAAGATGATTATGCAACACAATCTTTGGCAATGACTGAAAATTTTAATCGAGGGGGTAACTGGCGCGGTTCTGGTCGAGGTCGTGGCAGAGGTAATAATGGAAGAGGTCGAGGTTCATATTCGCAACAATCAAATTTCTCCTCTGGTTCTTCTTCTTCTTCTTCTTCGAACACACAAGGTTTTGGATCAAATACCTTTGGGAATCAGTCAGATCTTGCAGACCGACCAGTCAATCCTCCATGTCAAATCTGTAACAGAGAAGGACATAATGCCTTAGATTGTTACCACATAGGGAATTTCGCATATCAAGGAAAACAACCTTCAGCAAAGTTAGCAGCCATGGTAACATCTTCATACAGACAACCTCGTTTCCCTGCTCATACAAGTAATACTCAAGATTCTGGAATTTGGTTATATGACTCGGGCTGTAATATACATCTCTCTAGTGAACTAAGCAACTTCAACACAACCTCACCTTATTCCGGAGATGATAATGTAACAGTTGGCAACGACCAACCACCACAAATTTCCCATCAAGGCATTGGACAAAGCCACAAGCAAAACTCTCTATTATGGTCCAAGCAAGGATGGTATTTACCCAATCTATACTTCAAATTCTTTGCCTCCCTTCCCAAAAGCTAA

Protein sequence

MKKSGETIDSYIQRIKNLYHRLAAVEVLIDPEDLVIYTVNGLPLAYNVFKTSIRTRSQSISLFELHIMLKFEEAALDAQNKKDDYATQSLAMTENFNRGGNWRGSGRGRGRGNNGRGRGSYSQQSNFSSGSSSSSSSNTQGFGSNTFGNQSDLADRPVNPPCQICNREGHNALDCYHIGNFAYQGKQPSAKLAAMVTSSYRQPRFPAHTSNTQDSGIWLYDSGCNIHLSSELSNFNTTSPYSGDDNVTVGNDQPPQISHQGIGQSHKQNSLLWSKQGWYLPNLYFKFFASLPKS

Homology

[Close]

BLAST of Sed0015052 vs. NCBI nr
Match: KAA8523789.1 (hypothetical protein F0562_010212 [Nyssa sinensis])

HSP 1 Score: 164.5 bits (415), Expect = 1.4e-36
Identity = 116/278 (41.73%), Postives = 165/278 (59.35%), Query Frame = 0


Query: 1   MKKSGETIDSYIQRIKNLYHRLAAVEVLIDPEDLVIYTVNGLPLAYNVFKTSIRTRSQSI 60
           + K  ++IDSYIQ+IK     LA+V VLI+ ED++IY +NGLP  YN FKTSIRT+S++I
Sbjct: 174 ISKGKDSIDSYIQKIKQARDSLASVSVLIEDEDILIYVLNGLPQEYNAFKTSIRTKSENI 233

Query: 61  SLFELHIMLKFEEAALDAQNKKDDY-----ATQSLAMTENF--NRG---GNWRGSGRGRG 120
           +L E++ MLK EE  +++ +K+++      A  +     NF  NRG    N+ G GRGRG
Sbjct: 234 TLEEVYAMLKIEEQTIESVHKQNNSPPFPGAMMATNYRPNFSSNRGYSPSNFSGRGRGRG 293

Query: 121 RGNNGRGR-GSYSQQSNFSSGSSSSSSSNTQGFGSNTFGNQSDLADRPVNPPCQICNREG 180
           R +N  GR  S+ +  + + G S+      Q   SN   N S     PV   CQICN+ G
Sbjct: 294 RFSNRGGRMHSFGRFQSPNFGQSNLPYPTKQPQQSNQRSNNS----HPV--VCQICNKNG 353

Query: 181 HNALDCYHIGNFAYQGKQPSAKLAAMVTSSYRQPRFPAHTSNTQDSGIWLYDSGCNIHLS 240
           H+ALDCYH  +F+YQGK PS +L AM +++Y       +T +      W  D+G   H++
Sbjct: 354 HSALDCYHRMDFSYQGKPPSPQLTAM-SATY-------NTGSDCSPNYWYTDTGATNHIT 413

Query: 241 SELSNFNTTSPYSGDDNVTVGNDQPPQISHQGIGQSHK 268
           ++L+N N    Y GDDN+T+ N Q   ISH   GQSH+
Sbjct: 414 ADLANLNFPVEYQGDDNITIANGQALDISHS--GQSHQ 435

[Close]

BLAST of Sed0015052 vs. NCBI nr
Match: KAA8524269.1 (hypothetical protein F0562_010692 [Nyssa sinensis])

HSP 1 Score: 163.7 bits (413), Expect = 2.4e-36
Identity = 114/277 (41.16%), Postives = 162/277 (58.48%), Query Frame = 0


Query: 1   MKKSGETIDSYIQRIKNLYHRLAAVEVLIDPEDLVIYTVNGLPLAYNVFKTSIRTRSQSI 60
           + K  ++IDSYIQ+IK     LA+V VLI+ ED++IY +NGLP  YN FKTSIRT+S++I
Sbjct: 174 ISKGKDSIDSYIQKIKQARDSLASVSVLIEDEDILIYVLNGLPQEYNAFKTSIRTKSENI 233

Query: 61  SLFELHIMLKFEEAALDAQNKKDDY-----ATQSLAMTENF--NRG---GNWRGSGRGRG 120
           +L E++ MLK EE  +++ +K+++      A  +     NF  NRG    N+ G GRGRG
Sbjct: 234 TLEEVYAMLKIEEQTIESVHKQNNSPPFPGAMMATNYRPNFSSNRGYSPSNFSGRGRGRG 293

Query: 121 RGNNGRGR-GSYSQQSNFSSGSSSSSSSNTQGFGSNTFGNQSDLADRPVNPPCQICNREG 180
           R +N  GR  S+ +  + + G S+      Q   SN   N S     PV   CQICN+ G
Sbjct: 294 RFSNRGGRMHSFGRFQSPNFGQSNLPYPTKQPQQSNQRSNNS----HPV--VCQICNKNG 353

Query: 181 HNALDCYHIGNFAYQGKQPSAKLAAMVTSSYRQPRFPAHTSNTQDSGIWLYDSGCNIHLS 240
           H+ALDCYH  +F+YQGK PS +L AM +++Y       +T +      W  D+G   H++
Sbjct: 354 HSALDCYHRMDFSYQGKPPSPQLTAM-SATY-------NTGSDCSPNYWYTDTGATNHIT 413

Query: 241 SELSNFNTTSPYSGDDNVTVGNDQPPQISHQGIGQSH 267
           ++L+N N    Y GDDN+T+ N Q   ISH G    H
Sbjct: 414 ADLANLNFPVEYQGDDNITIANGQALDISHSGQSSIH 436

[Close]

BLAST of Sed0015052 vs. NCBI nr
Match: KAA8516701.1 (hypothetical protein F0562_016793 [Nyssa sinensis])

HSP 1 Score: 163.7 bits (413), Expect = 2.4e-36
Identity = 114/277 (41.16%), Postives = 162/277 (58.48%), Query Frame = 0


Query: 1   MKKSGETIDSYIQRIKNLYHRLAAVEVLIDPEDLVIYTVNGLPLAYNVFKTSIRTRSQSI 60
           + K  ++IDSYIQ+IK     LA+V VLI+ ED++IY +NGLP  YN FKTSIRT+S++I
Sbjct: 174 ISKGKDSIDSYIQKIKQARDSLASVSVLIEDEDILIYVLNGLPQEYNAFKTSIRTKSENI 233

Query: 61  SLFELHIMLKFEEAALDAQNKKDDY-----ATQSLAMTENF--NRG---GNWRGSGRGRG 120
           +L E++ MLK EE  +++ +K+++      A  +     NF  NRG    N+ G GRGRG
Sbjct: 234 TLEEVYAMLKIEEQTIESVHKQNNSPPFPGAMMATNYRPNFSSNRGYSPSNFSGRGRGRG 293

Query: 121 RGNNGRGR-GSYSQQSNFSSGSSSSSSSNTQGFGSNTFGNQSDLADRPVNPPCQICNREG 180
           R +N  GR  S+ +  + + G S+      Q   SN   N S     PV   CQICN+ G
Sbjct: 294 RFSNRGGRMHSFGRFQSPNFGQSNLPYPTKQPQQSNQRSNNS----HPV--VCQICNKNG 353

Query: 181 HNALDCYHIGNFAYQGKQPSAKLAAMVTSSYRQPRFPAHTSNTQDSGIWLYDSGCNIHLS 240
           H+ALDCYH  +F+YQGK PS +L AM +++Y       +T +      W  D+G   H++
Sbjct: 354 HSALDCYHRMDFSYQGKPPSPQLTAM-SATY-------NTGSDCSPNYWYTDTGATNHIT 413

Query: 241 SELSNFNTTSPYSGDDNVTVGNDQPPQISHQGIGQSH 267
           ++L+N N    Y GDDN+T+ N Q   ISH G    H
Sbjct: 414 ADLANLNFPVEYQGDDNITIANGQALDISHSGQSSIH 436

[Close]

BLAST of Sed0015052 vs. NCBI nr
Match: KAA8519786.1 (hypothetical protein F0562_014124 [Nyssa sinensis])

HSP 1 Score: 163.7 bits (413), Expect = 2.4e-36
Identity = 114/277 (41.16%), Postives = 162/277 (58.48%), Query Frame = 0


Query: 1   MKKSGETIDSYIQRIKNLYHRLAAVEVLIDPEDLVIYTVNGLPLAYNVFKTSIRTRSQSI 60
           + K  ++IDSYIQ+IK     LA+V VLI+ ED++IY +NGLP  YN FKTSIRT+S++I
Sbjct: 174 ISKGKDSIDSYIQKIKQARDSLASVSVLIEDEDILIYVLNGLPQEYNAFKTSIRTKSENI 233

Query: 61  SLFELHIMLKFEEAALDAQNKKDDY-----ATQSLAMTENF--NRG---GNWRGSGRGRG 120
           +L E++ MLK EE  +++ +K+++      A  +     NF  NRG    N+ G GRGRG
Sbjct: 234 TLEEVYAMLKIEEQTIESVHKQNNSPPFPGAMMATNYRPNFSSNRGYSPSNFSGRGRGRG 293

Query: 121 RGNNGRGR-GSYSQQSNFSSGSSSSSSSNTQGFGSNTFGNQSDLADRPVNPPCQICNREG 180
           R +N  GR  S+ +  + + G S+      Q   SN   N S     PV   CQICN+ G
Sbjct: 294 RFSNRGGRMHSFGRFQSPNFGQSNLPYPTKQPQQSNQRSNNS----HPV--VCQICNKNG 353

Query: 181 HNALDCYHIGNFAYQGKQPSAKLAAMVTSSYRQPRFPAHTSNTQDSGIWLYDSGCNIHLS 240
           H+ALDCYH  +F+YQGK PS +L AM +++Y       +T +      W  D+G   H++
Sbjct: 354 HSALDCYHRMDFSYQGKPPSPQLTAM-SATY-------NTGSDCSPNYWYTDTGATNHIT 413

Query: 241 SELSNFNTTSPYSGDDNVTVGNDQPPQISHQGIGQSH 267
           ++L+N N    Y GDDN+T+ N Q   ISH G    H
Sbjct: 414 ADLANLNFPVEYQGDDNITIANGQALDISHSGQSSIH 436

[Close]

BLAST of Sed0015052 vs. NCBI nr
Match: KAA8521875.1 (hypothetical protein F0562_012811 [Nyssa sinensis])

HSP 1 Score: 163.7 bits (413), Expect = 2.4e-36
Identity = 114/277 (41.16%), Postives = 162/277 (58.48%), Query Frame = 0


Query: 1   MKKSGETIDSYIQRIKNLYHRLAAVEVLIDPEDLVIYTVNGLPLAYNVFKTSIRTRSQSI 60
           + K  ++IDSYIQ+IK     LA+V VLI+ ED++IY +NGLP  YN FKTSIRT+S++I
Sbjct: 480 ISKGKDSIDSYIQKIKQARDSLASVSVLIEDEDILIYVLNGLPQEYNAFKTSIRTKSENI 539

Query: 61  SLFELHIMLKFEEAALDAQNKKDDY-----ATQSLAMTENF--NRG---GNWRGSGRGRG 120
           +L E++ MLK EE  +++ +K+++      A  +     NF  NRG    N+ G GRGRG
Sbjct: 540 TLEEVYAMLKIEEQTIESVHKQNNSPPFPGAMMATNYRPNFSSNRGYSPSNFSGRGRGRG 599

Query: 121 RGNNGRGR-GSYSQQSNFSSGSSSSSSSNTQGFGSNTFGNQSDLADRPVNPPCQICNREG 180
           R +N  GR  S+ +  + + G S+      Q   SN   N S     PV   CQICN+ G
Sbjct: 600 RFSNRGGRMHSFGRFQSPNFGQSNLPYPTKQPQQSNQRSNNS----HPV--VCQICNKNG 659

Query: 181 HNALDCYHIGNFAYQGKQPSAKLAAMVTSSYRQPRFPAHTSNTQDSGIWLYDSGCNIHLS 240
           H+ALDCYH  +F+YQGK PS +L AM +++Y       +T +      W  D+G   H++
Sbjct: 660 HSALDCYHRMDFSYQGKPPSPQLTAM-SATY-------NTGSDCSPNYWYTDTGATNHIT 719

Query: 241 SELSNFNTTSPYSGDDNVTVGNDQPPQISHQGIGQSH 267
           ++L+N N    Y GDDN+T+ N Q   ISH G    H
Sbjct: 720 ADLANLNFPVEYQGDDNITIANGQALDISHSGQSSIH 742

[Close]

BLAST of Sed0015052 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 4.5e-09
Identity = 72/284 (25.35%), Postives = 119/284 (41.90%), Query Frame = 0


Query: 3   KSGETIDSYIQRIKNLYHRLAAVEVLIDPEDLVIYTVNGLPLAYNVFKTSIRTRSQSISL 62
           K  +TID Y+Q +   + +LA +   +D ++ V   +  LP  Y      I  +    +L
Sbjct: 137 KGTKTIDDYMQGLVTRFDQLALLGKPMDHDEQVERVLENLPEEYKPVIDQIAAKDTPPTL 196

Query: 63  FELHIMLKFEEAALDAQNKKDDYATQSLAMTENFNRGGNWRGSGRGRGRGNNGRGRGSYS 122
            E+H  L   E+ + A +        + A++       N           NNG     Y 
Sbjct: 197 TEIHERLLNHESKILAVSSATVIPITANAVSHRNTTTTN---------NNNNGNRNNRYD 256

Query: 123 QQSNFSSGSSSSSSSNTQGFGSNTFGNQSDLADRPVNPPCQICNREGHNALDCYHIGNF- 182
            ++N ++ S     S+T    +N   NQS    +P    CQIC  +GH+A  C  + +F 
Sbjct: 257 NRNN-NNNSKPWQQSSTNFHPNN---NQS----KPYLGKCQICGVQGHSAKRCSQLQHFL 316

Query: 183 -AYQGKQPSAKLAAMVTSSYRQPRFPAHTSNTQDSGIWLYDSGCNIHLSSELSNFNTTSP 242
            +   +QP +           QPR      +   S  WL DSG   H++S+ +N +   P
Sbjct: 317 SSVNSQQPPSPFTPW------QPRANLALGSPYSSNNWLLDSGATHHITSDFNNLSLHQP 376

Query: 243 YSGDDNVTVGNDQPPQISHQGIGQSHKQNSLLWSKQGWYLPNLY 285
           Y+G D+V V +     ISH G      ++  L      Y+PN++
Sbjct: 377 YTGGDDVMVADGSTIPISHTGSTSLSTKSRPLNLHNILYVPNIH 397

[Close]

BLAST of Sed0015052 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.3e-08
Identity = 69/271 (25.46%), Postives = 112/271 (41.33%), Query Frame = 0


Query: 19  YHRLAAVEVLIDPEDLVIYTVNGLPLAYNVFKTSIRTRSQSISLFELHIMLKFEEAALDA 78
           + +LA +   +D ++ V   +  LP  Y      I  +    SL E+H  L   E+ L A
Sbjct: 134 FDQLALLGKPMDHDEQVERVLENLPDDYKPVIDQIAAKDTPPSLTEIHERLINRESKLLA 193

Query: 79  QNKKDDYATQSLAMTE---NFNRGGNWRGSGRGRGRGNNGRGRGSYSQQSNFSSGSSSSS 138
            N  +     +  +T    N NR  N RG  R     NN        + +++   SS S 
Sbjct: 194 LNSAEVVPITANVVTHRNTNTNRNQNNRGDNRNYNNNNN--------RSNSWQPSSSGSR 253

Query: 139 SSNTQGFGSNTFGNQSDLADRPVNPPCQICNREGHNALDCYHIGNFAYQGKQPSAKLAAM 198
           S N Q               +P    CQIC+ +GH+A  C  +  F     Q  +     
Sbjct: 254 SDNRQ--------------PKPYLGRCQICSVQGHSAKRCPQLHQFQSTTNQQQS----- 313

Query: 199 VTSSYR--QPRFPAHTSNTQDSGIWLYDSGCNIHLSSELSNFNTTSPYSGDDNVTVGNDQ 258
            TS +   QPR     ++  ++  WL DSG   H++S+ +N +   PY+G D+V + +  
Sbjct: 314 -TSPFTPWQPRANLAVNSPYNANNWLLDSGATHHITSDFNNLSFHQPYTGGDDVMIADGS 373

Query: 259 PPQISHQGIGQSHKQNSLLWSKQGWYLPNLY 285
              I+H G       +  L   +  Y+PN++
Sbjct: 374 TIPITHTGSASLPTSSRSLDLNKVLYVPNIH 376

[Close]

BLAST of Sed0015052 vs. ExPASy TrEMBL
Match: A0A2N9G2N5 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS21313 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 1.1e-37
Identity = 110/273 (40.29%), Postives = 153/273 (56.04%), Query Frame = 0


Query: 1   MKKSGETIDSYIQRIKNLYHRLAAVEVLIDPEDLVIYTVNGLPLAYNVFKTSIRTRSQSI 60
           +KK GE+I SY+Q++KN   +L AV +LID E+L+   + GLP  Y  F ++IRTR++ +
Sbjct: 159 LKKGGESISSYLQKVKNTRDKLVAVGILIDNEELLHIILKGLPREYGPFCSAIRTRNEPV 218

Query: 61  SLFELHIMLKFEEAAL--DAQNKKDDYATQSLAMTENFNRGGNWRGS-------GRGRGR 120
           S  E+ ++L+ +E +L   + + KD  A    A     NR  N + S        RGRGR
Sbjct: 219 SFEEIMVLLQTDELSLVECSDSAKDLQAMALFASAAPNNRNFNSQSSFYVNNSHSRGRGR 278

Query: 121 GNNGRGRGSYSQQSNFSSGSSSSSSSNTQGFGSNTFGNQSDLADRPVNPPCQICNREGHN 180
            N+ RGRG  +  +N  S    SS SN+   G +TF   S        P CQIC + GH 
Sbjct: 279 NNSQRGRGGRNNNNNQYSPHQYSSQSNSPTQGQSTFSQHSQNKSENSRPQCQICGKLGHQ 338

Query: 181 ALDCYHIGNFAYQGKQPSAKLAAMVTSSYRQPRFPAHTSNTQDSGIWLYDSGCNIHLSSE 240
           ALDCYH  +FAYQG+ P AKLAAM ++S          + TQ    WL D+G   HL++ 
Sbjct: 339 ALDCYHRMDFAYQGRHPPAKLAAMASTS----------NGTQAGESWLTDTGATDHLTAN 398

Query: 241 LSNFNTTSPYSGDDNVTVGNDQPPQISHQGIGQ 265
           +SN N  +PY G+D V VGN Q   I++ G GQ
Sbjct: 399 MSNLNVHTPYKGNDQVAVGNGQSIPINNIGTGQ 421

[Close]

BLAST of Sed0015052 vs. ExPASy TrEMBL
Match: A0A2N9G2I0 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS21670 PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 3.1e-37
Identity = 112/274 (40.88%), Postives = 153/274 (55.84%), Query Frame = 0


Query: 1   MKKSGETIDSYIQRIKNLYHRLAAVEVLIDPEDLVIYTVNGLPLAYNVFKTSIRTRSQSI 60
           +KK GE+I SY+Q++KN   +L AV +LID E+L+   + GLP  Y  F ++IRTR++ +
Sbjct: 37  LKKGGESISSYLQKVKNTRDKLVAVGILIDNEELLHIILKGLPREYGPFCSAIRTRNKPV 96

Query: 61  SLFELHIMLKFEEAAL--DAQNKKDDYATQSLAMTENFNRGGNWRGS-------GRGRGR 120
           S  E+ ++L+ EE +L   + + KD  A    A     NR  N + S        RGRGR
Sbjct: 97  SFEEIMVLLQTEELSLVECSDSAKDLQAMALFASAAPNNRNFNSQSSFYVNNSHSRGRGR 156

Query: 121 GNNGRGRGSYSQQSNFSSGSSSSSSSNTQGFGSNTFGNQSDLADRPVNPPCQICNREGHN 180
            N+ RGRG  +  +N  S    SS SN+   G +TF   S        P CQIC + GH 
Sbjct: 157 NNSQRGRGGRNNNNNQYSPHQYSSQSNSPTQGQSTFSQHSQNKSESSRPQCQICGKLGHQ 216

Query: 181 ALDCYHIGNFAYQGKQPSAKLAAMVTSSYRQPRFPAHTSNTQDSG-IWLYDSGCNIHLSS 240
           ALDCYH  +FAYQG+ P AKLAAM           A TSN   +G  WL D+G   HL++
Sbjct: 217 ALDCYHRMDFAYQGRHPPAKLAAM-----------ASTSNGAQAGESWLTDTGATDHLTA 276

Query: 241 ELSNFNTTSPYSGDDNVTVGNDQPPQISHQGIGQ 265
            ++N N  +PY G+D V VGN Q   I++ G GQ
Sbjct: 277 NMNNLNVHTPYKGNDQVAVGNGQSIPINNIGTGQ 299

[Close]

BLAST of Sed0015052 vs. ExPASy TrEMBL
Match: A0A5J5A0G3 (Retrotran_gag_3 domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_010212 PE=4 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 6.9e-37
Identity = 116/278 (41.73%), Postives = 165/278 (59.35%), Query Frame = 0


Query: 1   MKKSGETIDSYIQRIKNLYHRLAAVEVLIDPEDLVIYTVNGLPLAYNVFKTSIRTRSQSI 60
           + K  ++IDSYIQ+IK     LA+V VLI+ ED++IY +NGLP  YN FKTSIRT+S++I
Sbjct: 174 ISKGKDSIDSYIQKIKQARDSLASVSVLIEDEDILIYVLNGLPQEYNAFKTSIRTKSENI 233

Query: 61  SLFELHIMLKFEEAALDAQNKKDDY-----ATQSLAMTENF--NRG---GNWRGSGRGRG 120
           +L E++ MLK EE  +++ +K+++      A  +     NF  NRG    N+ G GRGRG
Sbjct: 234 TLEEVYAMLKIEEQTIESVHKQNNSPPFPGAMMATNYRPNFSSNRGYSPSNFSGRGRGRG 293

Query: 121 RGNNGRGR-GSYSQQSNFSSGSSSSSSSNTQGFGSNTFGNQSDLADRPVNPPCQICNREG 180
           R +N  GR  S+ +  + + G S+      Q   SN   N S     PV   CQICN+ G
Sbjct: 294 RFSNRGGRMHSFGRFQSPNFGQSNLPYPTKQPQQSNQRSNNS----HPV--VCQICNKNG 353

Query: 181 HNALDCYHIGNFAYQGKQPSAKLAAMVTSSYRQPRFPAHTSNTQDSGIWLYDSGCNIHLS 240
           H+ALDCYH  +F+YQGK PS +L AM +++Y       +T +      W  D+G   H++
Sbjct: 354 HSALDCYHRMDFSYQGKPPSPQLTAM-SATY-------NTGSDCSPNYWYTDTGATNHIT 413

Query: 241 SELSNFNTTSPYSGDDNVTVGNDQPPQISHQGIGQSHK 268
           ++L+N N    Y GDDN+T+ N Q   ISH   GQSH+
Sbjct: 414 ADLANLNFPVEYQGDDNITIANGQALDISHS--GQSHQ 435

[Close]

BLAST of Sed0015052 vs. ExPASy TrEMBL
Match: A0A5J5B049 (Retrotran_gag_3 domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_030285 PE=4 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 1.2e-36
Identity = 114/277 (41.16%), Postives = 162/277 (58.48%), Query Frame = 0


Query: 1   MKKSGETIDSYIQRIKNLYHRLAAVEVLIDPEDLVIYTVNGLPLAYNVFKTSIRTRSQSI 60
           + K  ++IDSYIQ+IK     LA+V VLI+ ED++IY +NGLP  YN FKTSIRT+S++I
Sbjct: 174 ISKGKDSIDSYIQKIKRARDSLASVSVLIEDEDILIYVLNGLPQEYNAFKTSIRTKSENI 233

Query: 61  SLFELHIMLKFEEAALDAQNKKDDY-----ATQSLAMTENF--NRG---GNWRGSGRGRG 120
           +L E++ MLK EE  +++ +K+++      A  +     NF  NRG    N+ G GRGRG
Sbjct: 234 TLEEVYAMLKIEEQTIESVHKQNNSPPFPGAMMATNYRPNFSSNRGYSPSNFSGRGRGRG 293

Query: 121 RGNNGRGR-GSYSQQSNFSSGSSSSSSSNTQGFGSNTFGNQSDLADRPVNPPCQICNREG 180
           R +N  GR  S+ +  + + G S+      Q   SN   N S     PV   CQICN+ G
Sbjct: 294 RFSNRGGRMHSFGRFQSPNFGQSNLPYPTKQPQQSNQRSNNS----HPV--VCQICNKNG 353

Query: 181 HNALDCYHIGNFAYQGKQPSAKLAAMVTSSYRQPRFPAHTSNTQDSGIWLYDSGCNIHLS 240
           H+ALDCYH  +F+YQGK PS +L AM +++Y       +T +      W  D+G   H++
Sbjct: 354 HSALDCYHRMDFSYQGKPPSPQLTAM-SATY-------NTGSDCSPNYWYTDTGATNHIT 413

Query: 241 SELSNFNTTSPYSGDDNVTVGNDQPPQISHQGIGQSH 267
           ++L+N N    Y GDDN+T+ N Q   ISH G    H
Sbjct: 414 ADLANLNFPVEYQGDDNITIANGQALDISHSGQSSIH 436

[Close]

BLAST of Sed0015052 vs. ExPASy TrEMBL
Match: A0A5J4ZT09 (Flavin-containing monooxygenase OS=Nyssa sinensis OX=561372 GN=F0562_012811 PE=3 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 1.2e-36
Identity = 114/277 (41.16%), Postives = 162/277 (58.48%), Query Frame = 0


Query: 1   MKKSGETIDSYIQRIKNLYHRLAAVEVLIDPEDLVIYTVNGLPLAYNVFKTSIRTRSQSI 60
           + K  ++IDSYIQ+IK     LA+V VLI+ ED++IY +NGLP  YN FKTSIRT+S++I
Sbjct: 480 ISKGKDSIDSYIQKIKQARDSLASVSVLIEDEDILIYVLNGLPQEYNAFKTSIRTKSENI 539

Query: 61  SLFELHIMLKFEEAALDAQNKKDDY-----ATQSLAMTENF--NRG---GNWRGSGRGRG 120
           +L E++ MLK EE  +++ +K+++      A  +     NF  NRG    N+ G GRGRG
Sbjct: 540 TLEEVYAMLKIEEQTIESVHKQNNSPPFPGAMMATNYRPNFSSNRGYSPSNFSGRGRGRG 599

Query: 121 RGNNGRGR-GSYSQQSNFSSGSSSSSSSNTQGFGSNTFGNQSDLADRPVNPPCQICNREG 180
           R +N  GR  S+ +  + + G S+      Q   SN   N S     PV   CQICN+ G
Sbjct: 600 RFSNRGGRMHSFGRFQSPNFGQSNLPYPTKQPQQSNQRSNNS----HPV--VCQICNKNG 659

Query: 181 HNALDCYHIGNFAYQGKQPSAKLAAMVTSSYRQPRFPAHTSNTQDSGIWLYDSGCNIHLS 240
           H+ALDCYH  +F+YQGK PS +L AM +++Y       +T +      W  D+G   H++
Sbjct: 660 HSALDCYHRMDFSYQGKPPSPQLTAM-SATY-------NTGSDCSPNYWYTDTGATNHIT 719

Query: 241 SELSNFNTTSPYSGDDNVTVGNDQPPQISHQGIGQSH 267
           ++L+N N    Y GDDN+T+ N Q   ISH G    H
Sbjct: 720 ADLANLNFPVEYQGDDNITIANGQALDISHSGQSSIH 742

The following BLAST results are available for this feature:

BLAST of Sed0015052 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA8523789.1	1.4e-36	41.73	hypothetical protein F0562_010212 [Nyssa sinensis]	[more]
KAA8524269.1	2.4e-36	41.16	hypothetical protein F0562_010692 [Nyssa sinensis]	[more]
KAA8516701.1	2.4e-36	41.16	hypothetical protein F0562_016793 [Nyssa sinensis]	[more]
KAA8519786.1	2.4e-36	41.16	hypothetical protein F0562_014124 [Nyssa sinensis]	[more]
KAA8521875.1	2.4e-36	41.16	hypothetical protein F0562_012811 [Nyssa sinensis]	[more]

BLAST of Sed0015052 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94HW2	4.5e-09	25.35	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	1.3e-08	25.46	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]

BLAST of Sed0015052 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2N9G2N5	1.1e-37	40.29	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS21313 PE=4 SV=1	[more]
A0A2N9G2I0	3.1e-37	40.88	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS21670 PE=4 SV=1	[more]
A0A5J5A0G3	6.9e-37	41.73	Retrotran_gag_3 domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_0...	[more]
A0A5J5B049	1.2e-36	41.16	Retrotran_gag_3 domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_0...	[more]
A0A5J4ZT09	1.2e-36	41.16	Flavin-containing monooxygenase OS=Nyssa sinensis OX=561372 GN=F0562_012811 PE=3...	[more]

BLAST of Sed0015052 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 3..75 e-value: 5.8E-9 score: 35.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 96..156
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 116..153
None	No IPR available	PANTHER	PTHR47481	FAMILY NOT NAMED	coord: 1..272

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0015052.1	Sed0015052.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005488	binding