Sed0015012 (gene) Chayote v1

Overview


Name	Sed0015012
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Unknown protein
Location	LG05: 1429101 .. 1429454 (+)
RNA-Seq Expression	Sed0015012
Synteny	Sed0015012

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGGGGAGAGGGGAAGCAAAATGGAGCGAAGGACGGCGACGAATATGAAGGCAGCACTAAATCCAAATGGAAAAGGGAAAAATATACGAAGCGCCGAATCTATTTTTCTTACGGTCTTCTCCGCGAATAGCAGCTGTTGGATTTGTTGATGCTTTTAATCGGACGGTGAAAGTGCGGATATCGCGAGGGGGAGGTGCAGGCTTAATGTGTGAACAATTGTAGACGATGGTTTCTATGTTCCACGTGGATGCCAGCGTGGAATATTCGACCGGCGTACACAAATAAAAGAATATTCGAAGAGTCACGTGGCGCGTCTGTATATGCTGCATCGGCGAAAAGCCCATTTGTGA

mRNA sequence

ATGGCGGGGGAGAGGGGAAGCAAAATGGAGCGAAGGACGGCGACGAATATGAAGGCAGCACTAAATCCAAATGGAAAAGGGAAAAATATACGAAGCGCCGAATCTATTTTTCTTACGGTCTTCTCCGCGAATAGCAGCTGTTGGATTTACGATGGTTTCTATGTTCCACGTGGATGCCAGCGTGGAATATTCGACCGGCGTACACAAATAAAAGAATATTCGAAGAGTCACGTGGCGCGTCTGTATATGCTGCATCGGCGAAAAGCCCATTTGTGA

Coding sequence (CDS)

ATGGCGGGGGAGAGGGGAAGCAAAATGGAGCGAAGGACGGCGACGAATATGAAGGCAGCACTAAATCCAAATGGAAAAGGGAAAAATATACGAAGCGCCGAATCTATTTTTCTTACGGTCTTCTCCGCGAATAGCAGCTGTTGGATTTACGATGGTTTCTATGTTCCACGTGGATGCCAGCGTGGAATATTCGACCGGCGTACACAAATAAAAGAATATTCGAAGAGTCACGTGGCGCGTCTGTATATGCTGCATCGGCGAAAAGCCCATTTGTGA

Protein sequence

MAGERGSKMERRTATNMKAALNPNGKGKNIRSAESIFLTVFSANSSCWIYDGFYVPRGCQRGIFDRRTQIKEYSKSHVARLYMLHRRKAHL

Homology

[Close]

BLAST of Sed0015012 vs. ExPASy TrEMBL
Match: A0A0A0L981 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G638000 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 3.1e-12
Identity = 46/81 (56.79%), Postives = 53/81 (65.43%), Query Frame = 0


Query: 3  GERGSKMERRTATNMKAALNPNGKGKNIRSAESIFLTVFSANSSCWIYDGFYVPRGCQRG 62
          GE G +MERRTATNMK ALNPN K K +R    I      A     + D  YVPRGCQRG
Sbjct: 10 GEEGKQMERRTATNMKGALNPNRKIKRMR----ILRERRQAQRLGNVDDSLYVPRGCQRG 69

Query: 63 IFDRRTQIKEYSKSHVARLYM 84
          +F R T++KEYS SHVAR Y+
Sbjct: 70 LFGRLTRMKEYSWSHVARGYV 86

The following BLAST results are available for this feature:

BLAST of Sed0015012 vs.


Match Name	E-value	Identity	Description

BLAST of Sed0015012 vs.


Match Name	E-value	Identity	Description

BLAST of Sed0015012 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L981	3.1e-12	56.79	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G638000 PE=4 SV=1	[more]

BLAST of Sed0015012 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0015012.1	Sed0015012.1	mRNA