Sed0014987 (gene) Chayote v1

Overview


Name	Sed0014987
Type	gene
Organism	Sechium edule (Chayote v1)
Description	ubiquinol-cytochrome c reductase complex 6.7 kDa protein
Location	LG04: 41128951 .. 41129319 (+)
RNA-Seq Expression	Sed0014987
Synteny	Sed0014987

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTGGTGAAAAGGGATTGTTGAAGTTCATGAGCCCAAAGCTCCGGAACCTCCTGCACCCCACCAACATCGAAGCTGCAATGTTATGGAGTGCTACTGGCACAGTCACTGCCCTTTGGCTTGTACAGGTATATATTTTTCTTAAAACTTCACCGTTTCTTTTAATTGCTTTGCCTCTTTTGGCAACTGCACCCATTCTTATTATCTAATCAGCATATGCTTTTGTTGGTTAGTGTAATGGTATTTTAGTGCAAGATCATAAATGATTTTCTTCTTCTGTTTGAAACTGACCAAACTTGGAGCCATTTGACTGGTTGAAGAAGAAGGTTTGGGAGGAGGAGAAAACAGAGGTGAAAACGGATGAATAG

mRNA sequence

ATGACTGGTGAAAAGGGATTGTTGAAGTTCATGAGCCCAAAGCTCCGGAACCTCCTGCACCCCACCAACATCGAAGCTGCAATGTTATGGAGTGCTACTGGCACAGTCACTGCCCTTTGGCTTGTACAGCCATTTGACTGGTTGAAGAAGAAGGTTTGGGAGGAGGAGAAAACAGAGGTGAAAACGGATGAATAG

Coding sequence (CDS)

ATGACTGGTGAAAAGGGATTGTTGAAGTTCATGAGCCCAAAGCTCCGGAACCTCCTGCACCCCACCAACATCGAAGCTGCAATGTTATGGAGTGCTACTGGCACAGTCACTGCCCTTTGGCTTGTACAGCCATTTGACTGGTTGAAGAAGAAGGTTTGGGAGGAGGAGAAAACAGAGGTGAAAACGGATGAATAG

Protein sequence

MTGEKGLLKFMSPKLRNLLHPTNIEAAMLWSATGTVTALWLVQPFDWLKKKVWEEEKTEVKTDE

Homology

[Close]

BLAST of Sed0014987 vs. NCBI nr
Match: XP_022988689.1 (ubiquinol-cytochrome c reductase complex 6.7 kDa protein [Cucurbita maxima])

HSP 1 Score: 106.7 bits (265), Expect = 7.6e-20
Identity = 53/67 (79.10%), Postives = 58/67 (86.57%), Query Frame = 0


Query: 1  MTGEKGLLKFMSPKLRNLLHPTNIEAAMLWSATGTVTALWLVQPFDWLKKKVW-EEEKTE 60
          MTGEKGLLKF+SPKLRN LHP NIEAA+LWS  GT TALWLVQPFDWLKKK+W  EEKTE
Sbjct: 17 MTGEKGLLKFLSPKLRNRLHPINIEAAVLWSVAGTATALWLVQPFDWLKKKIWGVEEKTE 76

Query: 61 --VKTDE 65
            V++DE
Sbjct: 77 DKVQSDE 83

[Close]

BLAST of Sed0014987 vs. NCBI nr
Match: KAG7031504.1 (hypothetical protein SDJN02_05544, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 106.7 bits (265), Expect = 7.6e-20
Identity = 53/67 (79.10%), Postives = 57/67 (85.07%), Query Frame = 0


Query: 1  MTGEKGLLKFMSPKLRNLLHPTNIEAAMLWSATGTVTALWLVQPFDWLKKKVWE-EEKTE 60
          MTGEKGLLKF SPKLRN LHP NIEAA+LWS  GT TALWLVQPFDWLKKK+WE EEK E
Sbjct: 17 MTGEKGLLKFFSPKLRNRLHPINIEAAVLWSVAGTATALWLVQPFDWLKKKIWEVEEKAE 76

Query: 61 --VKTDE 65
            V++DE
Sbjct: 77 DKVQSDE 83

[Close]

BLAST of Sed0014987 vs. NCBI nr
Match: KAG6600869.1 (hypothetical protein SDJN03_06102, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 106.7 bits (265), Expect = 7.6e-20
Identity = 53/67 (79.10%), Postives = 57/67 (85.07%), Query Frame = 0


Query: 1  MTGEKGLLKFMSPKLRNLLHPTNIEAAMLWSATGTVTALWLVQPFDWLKKKVWE-EEKTE 60
          MTGEKGLLKF SPKLRN LHP NIEAA+LWS  GT TALWLVQPFDWLKKK+WE EEK E
Sbjct: 2  MTGEKGLLKFFSPKLRNRLHPINIEAAVLWSVAGTATALWLVQPFDWLKKKIWEVEEKAE 61

Query: 61 --VKTDE 65
            V++DE
Sbjct: 62 DKVQSDE 68

[Close]

BLAST of Sed0014987 vs. NCBI nr
Match: KGN50751.1 (hypothetical protein Csa_005826 [Cucumis sativus])

HSP 1 Score: 98.6 bits (244), Expect = 2.1e-17
Identity = 50/66 (75.76%), Postives = 54/66 (81.82%), Query Frame = 0


Query: 2  TGEKGLLKFMSPKLRNLLHPTNIEAAMLWSATGTVTALWLVQPFDWLKKKVWE-EEKTE- 61
          TGEKGLLKF+ PKLRN+LHP NIEAA LWS  G  TALWLVQPFDWLKKKVW  EEK E 
Sbjct: 3  TGEKGLLKFLHPKLRNVLHPINIEAAALWSVAGIATALWLVQPFDWLKKKVWAVEEKGES 62

Query: 62 -VKTDE 65
           V+T+E
Sbjct: 63 GVQTNE 68

[Close]

BLAST of Sed0014987 vs. NCBI nr
Match: KAA0067023.1 (hypothetical protein E6C27_scaffold38G00590 [Cucumis melo var. makuwa] >TYK26259.1 hypothetical protein E5676_scaffold14G00230 [Cucumis melo var. makuwa])

HSP 1 Score: 77.8 bits (190), Expect = 3.8e-11
Identity = 47/103 (45.63%), Postives = 52/103 (50.49%), Query Frame = 0


Query: 2   TGEKGLLKFMSPKLRNLLHPTNIEAAMLWSATGTVTALWLV------------------- 61
           TGEKGLLKF+ PKLRNLLHP NIEA  LWS  GT TA  L                    
Sbjct: 3   TGEKGLLKFLHPKLRNLLHPINIEAVALWSVAGTATAFGLYRYSSLASPTLFFSSTSMFL 62

Query: 62  ------------------QPFDWLKKKVW---EEEKTEVKTDE 65
                             QPFDWLKKKVW   E+E+ EV+T+E
Sbjct: 63  FVVKNRNYSYRLETEKTWQPFDWLKKKVWKVEEKEENEVQTNE 105

[Close]

BLAST of Sed0014987 vs. ExPASy Swiss-Prot
Match: P48505 (Ubiquinol-cytochrome c reductase complex 6.7 kDa protein OS=Solanum tuberosum OX=4113 PE=1 SV=2)

HSP 1 Score: 47.4 bits (111), Expect = 7.2e-05
Identity = 23/54 (42.59%), Postives = 34/54 (62.96%), Query Frame = 0


Query: 6  GLLKFMSPKLRNLLHPTNIEAAMLWSATGTVTALWLVQPFDWLKKKVWEEEKTE 60
          GL KF+ PKLR     T+I+AA  W       ALW++QP+D+L+K   E+++ E
Sbjct: 10 GLFKFLRPKLRP--QSTDIQAAAGWGVAAVTGALWVIQPWDFLRKTFIEKQEEE 61

[Close]

BLAST of Sed0014987 vs. ExPASy Swiss-Prot
Match: Q94K78 (Cytochrome b-c1 complex subunit 10, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=UCRY PE=1 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 1.2e-04
Identity = 23/61 (37.70%), Postives = 33/61 (54.10%), Query Frame = 0


Query: 1  MTGEKGLLKFMSPKLRNLLHPTNIEAAMLWSATGTVTALWLVQPFDWLKKKVWEEEKTEV 60
          M G  GLL  + PK++ +    +I+AA  W       A+W+VQPF W+KK   +   TE 
Sbjct: 1  MAGTSGLLNAVKPKIQTI----DIQAAAGWGIAAAAGAIWVVQPFGWIKKTFIDPPPTEE 57

Query: 61 K 62
          K
Sbjct: 61 K 57

[Close]

BLAST of Sed0014987 vs. ExPASy TrEMBL
Match: A0A6J1JMA0 (ubiquinol-cytochrome c reductase complex 6.7 kDa protein OS=Cucurbita maxima OX=3661 GN=LOC111485942 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 3.7e-20
Identity = 53/67 (79.10%), Postives = 58/67 (86.57%), Query Frame = 0


Query: 1  MTGEKGLLKFMSPKLRNLLHPTNIEAAMLWSATGTVTALWLVQPFDWLKKKVW-EEEKTE 60
          MTGEKGLLKF+SPKLRN LHP NIEAA+LWS  GT TALWLVQPFDWLKKK+W  EEKTE
Sbjct: 17 MTGEKGLLKFLSPKLRNRLHPINIEAAVLWSVAGTATALWLVQPFDWLKKKIWGVEEKTE 76

Query: 61 --VKTDE 65
            V++DE
Sbjct: 77 DKVQSDE 83

[Close]

BLAST of Sed0014987 vs. ExPASy TrEMBL
Match: A0A0A0KSL8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G223090 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.0e-17
Identity = 50/66 (75.76%), Postives = 54/66 (81.82%), Query Frame = 0


Query: 2  TGEKGLLKFMSPKLRNLLHPTNIEAAMLWSATGTVTALWLVQPFDWLKKKVWE-EEKTE- 61
          TGEKGLLKF+ PKLRN+LHP NIEAA LWS  G  TALWLVQPFDWLKKKVW  EEK E 
Sbjct: 3  TGEKGLLKFLHPKLRNVLHPINIEAAALWSVAGIATALWLVQPFDWLKKKVWAVEEKGES 62

Query: 62 -VKTDE 65
           V+T+E
Sbjct: 63 GVQTNE 68

[Close]

BLAST of Sed0014987 vs. ExPASy TrEMBL
Match: A0A5A7VG06 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold14G00230 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.8e-11
Identity = 47/103 (45.63%), Postives = 52/103 (50.49%), Query Frame = 0


Query: 2   TGEKGLLKFMSPKLRNLLHPTNIEAAMLWSATGTVTALWLV------------------- 61
           TGEKGLLKF+ PKLRNLLHP NIEA  LWS  GT TA  L                    
Sbjct: 3   TGEKGLLKFLHPKLRNLLHPINIEAVALWSVAGTATAFGLYRYSSLASPTLFFSSTSMFL 62

Query: 62  ------------------QPFDWLKKKVW---EEEKTEVKTDE 65
                             QPFDWLKKKVW   E+E+ EV+T+E
Sbjct: 63  FVVKNRNYSYRLETEKTWQPFDWLKKKVWKVEEKEENEVQTNE 105

[Close]

BLAST of Sed0014987 vs. ExPASy TrEMBL
Match: A9PAG4 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_019G059500 PE=2 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 4.2e-08
Identity = 31/61 (50.82%), Postives = 39/61 (63.93%), Query Frame = 0


Query: 1  MTGEKGLLKFMSPKLRNLLHPTNIEAAMLWSATGTVTALWLVQPFDWLKKKVWEEEKTEV 60
          M GE  + KF+SP+LR  L  T+I+ A  W      TALWLVQPFDW+KK  +E+  TE 
Sbjct: 1  MAGENAMFKFLSPRLR--LQSTDIQTAAFWGVAAGTTALWLVQPFDWIKKTFFEKANTEE 59

Query: 61 K 62
          K
Sbjct: 61 K 59

[Close]

BLAST of Sed0014987 vs. ExPASy TrEMBL
Match: A0A2P2J2E2 (Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 5.5e-08
Identity = 30/59 (50.85%), Postives = 40/59 (67.80%), Query Frame = 0


Query: 1  MTGEKGLLKFMSPKLRNLLHPTNIEAAMLWSATGTVTALWLVQPFDWLKKKVWEEEKTE 60
          M GE  L KF+SP+LR     T+I+AA  W    T TALWL+QPFDW+KK   ++E++E
Sbjct: 1  MAGEAALSKFLSPRLRP--QSTDIQAAAFWGVAATTTALWLIQPFDWIKKTFMQKEQSE 57

[Close]

BLAST of Sed0014987 vs. TAIR 10
Match: AT2G40765.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, mitochondrial respiratory chain complex III; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 32 Blast hits to 32 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 46.6 bits (109), Expect = 8.7e-06
Identity = 23/61 (37.70%), Postives = 33/61 (54.10%), Query Frame = 0


Query: 1  MTGEKGLLKFMSPKLRNLLHPTNIEAAMLWSATGTVTALWLVQPFDWLKKKVWEEEKTEV 60
          M G  GLL  + PK++ +    +I+AA  W       A+W+VQPF W+KK   +   TE 
Sbjct: 1  MAGTSGLLNAVKPKIQTI----DIQAAAGWGIAAAAGAIWVVQPFGWIKKTFIDPPPTEE 57

Query: 61 K 62
          K
Sbjct: 61 K 57

The following BLAST results are available for this feature:

BLAST of Sed0014987 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022988689.1	7.6e-20	79.10	ubiquinol-cytochrome c reductase complex 6.7 kDa protein [Cucurbita maxima]	[more]
KAG7031504.1	7.6e-20	79.10	hypothetical protein SDJN02_05544, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6600869.1	7.6e-20	79.10	hypothetical protein SDJN03_06102, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KGN50751.1	2.1e-17	75.76	hypothetical protein Csa_005826 [Cucumis sativus]	[more]
KAA0067023.1	3.8e-11	45.63	hypothetical protein E6C27_scaffold38G00590 [Cucumis melo var. makuwa] >TYK26259...	[more]

BLAST of Sed0014987 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P48505	7.2e-05	42.59	Ubiquinol-cytochrome c reductase complex 6.7 kDa protein OS=Solanum tuberosum OX...	[more]
Q94K78	1.2e-04	37.70	Cytochrome b-c1 complex subunit 10, mitochondrial OS=Arabidopsis thaliana OX=370...	[more]

BLAST of Sed0014987 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JMA0	3.7e-20	79.10	ubiquinol-cytochrome c reductase complex 6.7 kDa protein OS=Cucurbita maxima OX=...	[more]
A0A0A0KSL8	1.0e-17	75.76	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G223090 PE=4 SV=1	[more]
A0A5A7VG06	1.8e-11	45.63	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A9PAG4	4.2e-08	50.82	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_019G059500 PE=2 ...	[more]
A0A2P2J2E2	5.5e-08	50.85	Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1	[more]

BLAST of Sed0014987 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G40765.1	8.7e-06	37.70	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0014987.1	Sed0014987.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane