Sed0014971 (gene) Chayote v1

Overview


Name	Sed0014971
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Ribosome-binding factor A
Location	LG05: 44184418 .. 44189190 (-)
RNA-Seq Expression	Sed0014971
Synteny	Sed0014971

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCCGTACTAATCCGGACCTCAAAAAAAAAAAGGTTCATAGCTCGCAAATCCAAATCCAAATCCAAATCCAGTTCAGTCGAAGAAAAGTAGAACAAACCCACAAAAATTGTTGATAACCGGAATCAAATTTAGAGGATGCCGCATCTGCTGCAACAAATTCATCATTTCCCACTTAAACTCTCATCTTCCCTCGCCAATTCACGATTTCCCTCTCAAATTCAAGCGTCGCCGCCATGGATTCGCTCCCCAAATTCCGCCACCGTTGTTCGTCAACGTCCGGCAGTGAGAGGCGCAACGATTCGGTGCATGGCCAATTCTCGGAGGGTTAAAATGGTGGCCAAGCAGATTCAAAGGGAACTTTCCGATATGCTTCTCACCGATAAGGTTTTGAAGTTCGCCATTCTTCCCGAGGCTTCTTTGGGAGCCGATAAGTACCTATCGTCTCTCACCACCATCACCGACGTTGAAGTCTCCTCCGATTTGCAGGTATTTATTAGAGATTCAAGAACTGGGTAGGGTTTTTTTTGTAGTGTGTGGTAGAATTTGATTTTGGTTTTTCTTTTGTGTTCTGTATACCCTGAAATTATAGCTCGTTATGGAAATGGGAAAGAATTGAAGCTAAGGGCTAAAGCCTAAAGGGTGATTTTGAATGTATATAAATTATGTTATCTGGGTTTCACACTAAATTGTGTATTTGTAGAAGAAATGAATTTTTAATTTCTTAAATTGGTACATTAGTCAATGGGTTGTTGTGCAAATTCCGTTGAAGATAATTATGATGTACAAGTCCCCCTCTTAGGACTTCAAGTTAGATGTTCAACTTCGGGAGTGTTTCACCTTATTATCCTAATGTAAGAAAGCTTAGAACTTGTCTCCATGGAAAGCCTCGTTGGTTGAGGTTCGAGGCTTTCAAGACATGCTTTCTTAGAGTTCTCAGGTTCGAACCCCACGGATGAGCTTAATTATAAAATCCCTCGTTGTCTTCCGAGTTTAAGCGTTGGAACCGGTGCGAATGTCTCTGGGTATAGTGGAATGAAATTCCAATTTCAGTTTTAAAAAAAAAAAAAAACTCGGAACCTGGCCCAAAGTCTCTTTAACACTTTCATCCTTATCAATGAAAATGTTTTCACTTGTTAATGGGATTCAAACTCTTTTGTCTTCCATGAGCTGCAACAGATCTGGTTAGTCGTTTGCTGTTTGATCAACAATAGTAAGCCTCTAGGCATTGAATTAGTTTTCATCTCTCCGTTTCTTGATTGTAATCAATGTCAAATGGAGCATAGAGATTATTTCTTGAAAGAGTGGACATGTATGGTATGCGTTTTAATTGTTGTGAAAATTTCAGTACACAAGTCAGTTTGTTAGCTAAACCTTATGTCAAGTCTGTTTCTTAAATCGTATTTAGCCATTTAACTATTCATCTCTTGCGAGTTCACAAGTCAGTTTGTTATTTAAATTGTTCTGTAGGTGTTAATGTTATTATGCCAATCTAAACTTAAACTCACCAGGACAAAAAATTAAGAGCTTTTTCTTTTCATTTTGGTTTATATGTTGACCACCTTGATCGATGCTTCAGCTGATAAGTAATTGTTGCTATTATTGAATACACAGGTGGTAAAAGTATATGTATCTGTCTTTGGTGATGAAAGAGGAAAGGATGTTGCAATGGCTGGGTTGAAGTCTAAAGCTAAGTACGTTCGAAGTGTATTGGGAAAGCGTATGAAGCTTCGACTAACTCCCGAGATACGTTTTATAGAAGATGAGTCTTTTGAGAGAGGAAGCAGGGTAAGTAACCATTTATGTTCTTCTTGCTTCACATAAAAAATTTCTTGCTGTGACTGGAGACCAGTTCAATTATTTATAAGAATTCATTCCAAAAATGGTTTTAATCTCATATTCTTTACTGTTTCCTAGTGACATACTGTGATAGTTTGAGGAATAGCTTGTTTTAGCTGTTCTGATAGGGGGATGATGGACCTTATAAATGCACCACATGAGGCTAATTAGTCTATGCCACCAACAGATTTGGTGTCACCCTTCTTGGTATAAATTAGAATTAATGATGACATTCATAAAAACTCTTGTAACACTCTCTTTTATGTCTTCCTTGAGGATTTCCAATGCTTTTTAAAGAAATCTGAATTATAACCATCCGGTCCGAGGACTTGTTTGTACCCAAATCCTCAATAACTTCCCATACATCAGTTACGGGAATTTCAAGAGCAAGAGGCTGTTCATTGGAGATGGGTTTGAGAAAACAGGATTATGAAAAGTACTGATTGTGGATTAGATTGACTGTTAAAAGTACAAATCATTTCGGAGTGGCCTAGTGGTTAAGAAGGAATTCAATCTATGATGGTCATATACTTAAAGAGTTAATTTCCTACTCGTTTTCTTGACATTCAAATGTTGCAGGGTCTGACGGTTAGTATCCGATGAGAATAGTCGAAATATGTGTAAGCTGACCCGAGCATTCACATACATTTTTTTAAAAAAAGTACAGCAACGCTCATTAGAGTAGACGTCAATTACAAAGGTCAACTCCTATAGTTGTTTGAGTTCAAAATAGGATTTCTTGGGTGGAAAAAAAAATCGATTTAAAACTCATTCAGACATTGCCTGTTGCAATTTTTCATAGTTGTACATCGCTTATAATTTAAGCAACTGGAAGATTACTTCAAGATTCTTTTCTGTACTATTTTGGTTTGAACGTTTTCAGGTAATTGCCATATTGGATCGGATCAAGGACAAAAAGACGGATACGGATGATGAAGACTTTGAGCAATCTGAACTATCCGATGCTCCTCAAGATGACAAGGACTGGGAAGGCGATGATGCTGATGAAGACATAATATATGTACGATGAGCTGTTTTATTTCTTGTCCAACTTATGCTCATCTGTGCCGAGGCATCGGTTTAATCTCCCAGGTTTGTATATTTCGAGTTTAAGCAACAAATTTACTATCTCTACCCTTGTTATTATCTATCTTAGTCTTACATATGCAATATAGTAAACTAATCTGGCCTAGATGTGTAGTGTAGCTCGCTTCTCATGTCTGAAATTCATGGTTTCAAGTTATATAGACAATCATCTATCTGGTTTTAGTTTTGCTCATCAAAACTTTGGGGCTCTAGGTTGAAGTGATATAGTATGCCTATAATTTTGTGACTATGCCTATTAAGGTGAGTTTTGTAGTTCTTTTAGTTTAAGCACCTTTTTAAAAGTTTTTTTTTCTGAAAATATTTTTAATTAAAGTTCTAGTGTATTTAATTACATTTTCCAACTTAAAAGTATTTTTTTTAATTCAATAATATTTGTTTGTTGATGGAGGGTTTCTTACCTATAACATTTTAATTAATTAACTAGGGTATATATGATGTCACGACAAGTAATGTTGAACTCAAATTTGTTTGGTTACATTTACACGTGATCCTCAAATGTCGAATTACTACAAAGCCATTTGTTGTCTTTAAGTTTAAAATCTATGCAGAAAGATATTTTCTTATCATCTTATTTTCTGTTTATTCTTTAGTTCTTTTATTAGTTAATATTCTATTAGTCCTTGAGGGAGAAAGAAAACAAAAGTATAATTTATGTTCTCTGCTGTTTTCTGTTTTGAAGTTGTTTCTAGAAATTATTCTACCAAACGAGTTTCGATTTGTTTAAAGTTCTTCTTTAAGTAATAAACTAAGACAAAAACCAATTTAAACCTTTTTTCTCAATTAAATATTGTCTTATTCCTTTTGTTCTTCAAGTTTAGCTAAAACTTCAAAAAAAAAAAACTCTTTTTTTTGGTTCAACAAATATATATCAGTGAAAAAAGATATCAATGACGATGGTTAAACGAAGAGTAATAAGTCAGTTATACTAATACGACGGAATAAATGAAACAACAATTAAAAGAAATATAAAGATGATCATTGGCCGAACATGCAAACCAATTTTTAAAGAAAAAATGGGGATGATGAGAGAATCGTCGTGTAGATGATGATAACCCAGTAAAGAGACAAATTTATATGTTTTGTTGCCCTACCACAGCTTCAAAAACACGAATATGATGTCCGTGCTTCCAGGAGATGCCAAAGGGTGGTGAAGTTGATTGAAGACTTGGGTTTTAAAGGTATACCTGTGACATTTCCTTCGATATCTCTCGGTGTCTGGCCTATGGACGAATGTGGTCACCCTTGTTTTAAAAAAAATGAAGATTACAATAGCAGCCCGGCAAAGAGGGTGGAGGATTCAAAGCTATAACTTTTGGACAGGGAATCATATTTATATTTGTTTCATTATATTCTTGTTAAGTTATCATCTATCTACACGACGAATCTCTCGTTCCTTCTTTAAAGATTGGCTTACATGTTCGGCCAACGATCATCTATATGTTTCTTTGAACTGTGTTCATTTTTTCGGTTGAACTTGTATAACTGAGTTTATCCTTGGGATTATATAATTTTGAAGCCACCATTGTTATTTGTGCAGAGCAAGAAATGGAAGTATGTTTCAACACCAAGCTCTGCATCTGCACTAAAAATGATGCTGCTCATGATTCTAACTATGCCATCCAAAATCTATTATCATTAGATAATTGTTTGTAATTGCATGAATATGATGATATTAATTATCAAATACAACTTGGCATAAGAATTTAAATGCTGATGTCTGAGAAAAATAGAGCAAAATTTACCAACTTATTGGTAAGTATGTTGTACATCCTTATATGAGCCACATCTTTTTATTTATTTATTTTTAAATTTATCAAAATATGTTAAATC

mRNA sequence

GCCGTACTAATCCGGACCTCAAAAAAAAAAAGGTTCATAGCTCGCAAATCCAAATCCAAATCCAAATCCAGTTCAGTCGAAGAAAAGTAGAACAAACCCACAAAAATTGTTGATAACCGGAATCAAATTTAGAGGATGCCGCATCTGCTGCAACAAATTCATCATTTCCCACTTAAACTCTCATCTTCCCTCGCCAATTCACGATTTCCCTCTCAAATTCAAGCGTCGCCGCCATGGATTCGCTCCCCAAATTCCGCCACCGTTGTTCGTCAACGTCCGGCAGTGAGAGGCGCAACGATTCGGTGCATGGCCAATTCTCGGAGGGTTAAAATGGTGGCCAAGCAGATTCAAAGGGAACTTTCCGATATGCTTCTCACCGATAAGGTTTTGAAGTTCGCCATTCTTCCCGAGGCTTCTTTGGGAGCCGATAAGTACCTATCGTCTCTCACCACCATCACCGACGTTGAAGTCTCCTCCGATTTGCAGGTGGTAAAAGTATATGTATCTGTCTTTGGTGATGAAAGAGGAAAGGATGTTGCAATGGCTGGGTTGAAGTCTAAAGCTAAGTACGTTCGAAGTGTATTGGGAAAGCGTATGAAGCTTCGACTAACTCCCGAGATACGTTTTATAGAAGATGAGTCTTTTGAGAGAGGAAGCAGGGTAATTGCCATATTGGATCGGATCAAGGACAAAAAGACGGATACGGATGATGAAGACTTTGAGCAATCTGAACTATCCGATGCTCCTCAAGATGACAAGGACTGGGAAGGCGATGATGCTGATGAAGACATAATATATGTACGATGAGCTGTTTTATTTCTTGTCCAACTTATGCTCATCTGTGCCGAGGCATCGGTTTAATCTCCCAGCTTCAAAAACACGAATATGATGTCCGTGCTTCCAGGAGATGCCAAAGGGTGGTGAAGTTGATTGAAGACTTGGGTTTTAAAGGTATACCTGTGACATTTCCTTCGATATCTCTCGGTGTCTGGCCTATGGACGAATGTGGTCACCCTTGTTTTAAAAAAAATGAAGATTACAATAGCAGCCCGGCAAAGAGGGTGGAGGATTCAAAGCTATAACTTTTGGACAGGGAATCATATTTATATTTGTTTCATTATATTCTTGTTAAGTTATCATCTATCTACACGACGAATCTCTCGTTCCTTCTTTAAAGATTGGCTTACATGTTCGGCCAACGATCATCTATATGTTTCTTTGAACTGTGTTCATTTTTTCGGTTGAACTTGTATAACTGAGTTTATCCTTGGGATTATATAATTTTGAAGCCACCATTGTTATTTGTGCAGAGCAAGAAATGGAAGTATGTTTCAACACCAAGCTCTGCATCTGCACTAAAAATGATGCTGCTCATGATTCTAACTATGCCATCCAAAATCTATTATCATTAGATAATTGTTTGTAATTGCATGAATATGATGATATTAATTATCAAATACAACTTGGCATAAGAATTTAAATGCTGATGTCTGAGAAAAATAGAGCAAAATTTACCAACTTATTGGTAAGTATGTTGTACATCCTTATATGAGCCACATCTTTTTATTTATTTATTTTTAAATTTATCAAAATATGTTAAATC

Coding sequence (CDS)

ATGCCGCATCTGCTGCAACAAATTCATCATTTCCCACTTAAACTCTCATCTTCCCTCGCCAATTCACGATTTCCCTCTCAAATTCAAGCGTCGCCGCCATGGATTCGCTCCCCAAATTCCGCCACCGTTGTTCGTCAACGTCCGGCAGTGAGAGGCGCAACGATTCGGTGCATGGCCAATTCTCGGAGGGTTAAAATGGTGGCCAAGCAGATTCAAAGGGAACTTTCCGATATGCTTCTCACCGATAAGGTTTTGAAGTTCGCCATTCTTCCCGAGGCTTCTTTGGGAGCCGATAAGTACCTATCGTCTCTCACCACCATCACCGACGTTGAAGTCTCCTCCGATTTGCAGGTGGTAAAAGTATATGTATCTGTCTTTGGTGATGAAAGAGGAAAGGATGTTGCAATGGCTGGGTTGAAGTCTAAAGCTAAGTACGTTCGAAGTGTATTGGGAAAGCGTATGAAGCTTCGACTAACTCCCGAGATACGTTTTATAGAAGATGAGTCTTTTGAGAGAGGAAGCAGGGTAATTGCCATATTGGATCGGATCAAGGACAAAAAGACGGATACGGATGATGAAGACTTTGAGCAATCTGAACTATCCGATGCTCCTCAAGATGACAAGGACTGGGAAGGCGATGATGCTGATGAAGACATAATATATGTACGATGA

Protein sequence

MPHLLQQIHHFPLKLSSSLANSRFPSQIQASPPWIRSPNSATVVRQRPAVRGATIRCMANSRRVKMVAKQIQRELSDMLLTDKVLKFAILPEASLGADKYLSSLTTITDVEVSSDLQVVKVYVSVFGDERGKDVAMAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRVIAILDRIKDKKTDTDDEDFEQSELSDAPQDDKDWEGDDADEDIIYVR

Homology

[Close]

BLAST of Sed0014971 vs. NCBI nr
Match: XP_022948118.1 (probable ribosome-binding factor A, chloroplastic [Cucurbita moschata])

HSP 1 Score: 366.7 bits (940), Expect = 1.4e-97
Identity = 198/227 (87.22%), Postives = 211/227 (92.95%), Query Frame = 0


Query: 1   MPHLLQQI----HHFPLKLSSSLANSRFPSQIQASPPWIRSPNSATVVRQRPAVRGATIR 60
           MPHLLQQI    HHFPLKLSSSLA+SRFPSQ  ASPP   SPNS  +VR+RP +RGATIR
Sbjct: 1   MPHLLQQIHPQSHHFPLKLSSSLASSRFPSQFLASPPCFCSPNSVALVRRRPVMRGATIR 60

Query: 61  CMANSRRVKMVAKQIQRELSDMLLTDKVLKFAILPEASLGADKYLSSLTTITDVEVSSDL 120
           CMANSRRVKMV+KQIQRELS+MLLTDKVL+FAILPEASLGADKYLSSLTTITDVE+SSDL
Sbjct: 61  CMANSRRVKMVSKQIQRELSNMLLTDKVLQFAILPEASLGADKYLSSLTTITDVEISSDL 120

Query: 121 QVVKVYVSVFGDERGKDVAMAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRV 180
           QVVKVYVSVFGDERGKD+AMAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRV
Sbjct: 121 QVVKVYVSVFGDERGKDIAMAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRV 180

Query: 181 IAILDRIKDKKTDTDDEDFEQSELSDAPQDDKDWEGDDADEDIIYVR 224
           IAILDRIKD+K + DDED EQSELSDAPQDD+DWE DDADEDIIYV+
Sbjct: 181 IAILDRIKDEKNNIDDEDMEQSELSDAPQDDRDWEEDDADEDIIYVQ 227

[Close]

BLAST of Sed0014971 vs. NCBI nr
Match: XP_023534592.1 (probable ribosome-binding factor A, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 365.2 bits (936), Expect = 4.1e-97
Identity = 197/227 (86.78%), Postives = 210/227 (92.51%), Query Frame = 0


Query: 1   MPHLLQQI----HHFPLKLSSSLANSRFPSQIQASPPWIRSPNSATVVRQRPAVRGATIR 60
           MPHLLQQI    HHFPLKLSSSLA+SRFPSQ  ASPP   SPNS  VVR+RP +RG TIR
Sbjct: 1   MPHLLQQIHPQSHHFPLKLSSSLASSRFPSQFLASPPCFCSPNSVAVVRRRPVMRGVTIR 60

Query: 61  CMANSRRVKMVAKQIQRELSDMLLTDKVLKFAILPEASLGADKYLSSLTTITDVEVSSDL 120
           CMANSRRVKMV+KQIQRELS+MLLTDKVL+FAILPEASLGADKYLSSLTTITDVE+SSDL
Sbjct: 61  CMANSRRVKMVSKQIQRELSNMLLTDKVLQFAILPEASLGADKYLSSLTTITDVEISSDL 120

Query: 121 QVVKVYVSVFGDERGKDVAMAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRV 180
           QVVKVYVSVFGDERGKD+AMAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRV
Sbjct: 121 QVVKVYVSVFGDERGKDIAMAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRV 180

Query: 181 IAILDRIKDKKTDTDDEDFEQSELSDAPQDDKDWEGDDADEDIIYVR 224
           IAILDRIKD+K + DDED EQSELSD+PQDD+DWE DDADEDIIYV+
Sbjct: 181 IAILDRIKDEKNNIDDEDMEQSELSDSPQDDRDWEEDDADEDIIYVQ 227

[Close]

BLAST of Sed0014971 vs. NCBI nr
Match: KAG6605037.1 (putative ribosome-binding factor A, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 364.4 bits (934), Expect = 7.1e-97
Identity = 197/225 (87.56%), Postives = 209/225 (92.89%), Query Frame = 0


Query: 1   MPHLLQQI----HHFPLKLSSSLANSRFPSQIQASPPWIRSPNSATVVRQRPAVRGATIR 60
           MPHLLQQI    HHFPLKLSSSLA+SRFPSQ  ASPP   SPNS  +VR+RP +RGATIR
Sbjct: 1   MPHLLQQIHPQSHHFPLKLSSSLASSRFPSQFLASPPCFCSPNSVALVRRRPVMRGATIR 60

Query: 61  CMANSRRVKMVAKQIQRELSDMLLTDKVLKFAILPEASLGADKYLSSLTTITDVEVSSDL 120
           CMANSRRVKMV+KQIQRELS+MLLTDKVL+FAILPEASLGADKYLSSLTTITDVE+SSDL
Sbjct: 61  CMANSRRVKMVSKQIQRELSNMLLTDKVLQFAILPEASLGADKYLSSLTTITDVEISSDL 120

Query: 121 QVVKVYVSVFGDERGKDVAMAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRV 180
           QVVKVYVSVFGDERGKD+AMAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRV
Sbjct: 121 QVVKVYVSVFGDERGKDIAMAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRV 180

Query: 181 IAILDRIKDKKTDTDDEDFEQSELSDAPQDDKDWEGDDADEDIIY 222
           IAILDRIKD+K + DDED EQSELSDAPQDD+DWE DDADEDIIY
Sbjct: 181 IAILDRIKDEKNNIDDEDMEQSELSDAPQDDRDWEEDDADEDIIY 225

[Close]

BLAST of Sed0014971 vs. NCBI nr
Match: XP_023006992.1 (probable ribosome-binding factor A, chloroplastic [Cucurbita maxima])

HSP 1 Score: 361.7 bits (927), Expect = 4.6e-96
Identity = 194/227 (85.46%), Postives = 210/227 (92.51%), Query Frame = 0


Query: 1   MPHLLQQI----HHFPLKLSSSLANSRFPSQIQASPPWIRSPNSATVVRQRPAVRGATIR 60
           MPHLLQQI    HHFPLKLSSSLA+SRFPSQ   SPP   SPNS  +VRQRP +RGATI+
Sbjct: 1   MPHLLQQIHPQPHHFPLKLSSSLASSRFPSQFLTSPPCFCSPNSVALVRQRPVMRGATIQ 60

Query: 61  CMANSRRVKMVAKQIQRELSDMLLTDKVLKFAILPEASLGADKYLSSLTTITDVEVSSDL 120
           CMANSRRVKMV+KQIQRELS+MLLTDKVL+FAILPEASLGADKYLSSLTTITDVE+SSDL
Sbjct: 61  CMANSRRVKMVSKQIQRELSNMLLTDKVLQFAILPEASLGADKYLSSLTTITDVEISSDL 120

Query: 121 QVVKVYVSVFGDERGKDVAMAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRV 180
           QVVKVYVSVFGDERGKD+AMAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRV
Sbjct: 121 QVVKVYVSVFGDERGKDIAMAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRV 180

Query: 181 IAILDRIKDKKTDTDDEDFEQSELSDAPQDDKDWEGDDADEDIIYVR 224
           IAILDRIKD+K + DDED E+SELSDAPQDD+DWE D+ADEDIIY++
Sbjct: 181 IAILDRIKDEKNNIDDEDMEKSELSDAPQDDRDWEEDEADEDIIYIQ 227

[Close]

BLAST of Sed0014971 vs. NCBI nr
Match: XP_038900542.1 (probable ribosome-binding factor A, chloroplastic [Benincasa hispida])

HSP 1 Score: 347.8 bits (891), Expect = 6.8e-92
Identity = 193/227 (85.02%), Postives = 206/227 (90.75%), Query Frame = 0


Query: 1   MPHLLQQIH---HF-PLKLSSSLANSRFPSQIQASPPWIRSPNSATVVRQRPAVRGATIR 60
           MPHLLQQIH   H  PLKLSSSL +S FPSQ QAS PW  SP+S T++R  P + GATIR
Sbjct: 1   MPHLLQQIHPQPHLSPLKLSSSLPSSPFPSQFQASRPWFYSPSSVTLLRP-PRMMGATIR 60

Query: 61  CMANSRRVKMVAKQIQRELSDMLLTDKVLKFAILPEASLGADKYLSSLTTITDVEVSSDL 120
           CMANSRRVKMVAKQIQRELSDMLLTDKVL++AILPEASLGADKYLSSLTTITDVEVS+DL
Sbjct: 61  CMANSRRVKMVAKQIQRELSDMLLTDKVLQYAILPEASLGADKYLSSLTTITDVEVSADL 120

Query: 121 QVVKVYVSVFGDERGKDVAMAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRV 180
           QVVKVYVSVFGDERGKDVA+AGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRV
Sbjct: 121 QVVKVYVSVFGDERGKDVAIAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRV 180

Query: 181 IAILDRIKDKKTDTDDEDFEQSELSDAPQDDKDWEGDDADEDIIYVR 224
           IAILDRIKDKK D DDEDFE SELSD  +DD+DW+GDDADEDIIYV+
Sbjct: 181 IAILDRIKDKKKDNDDEDFEPSELSDTLEDDRDWKGDDADEDIIYVQ 226

[Close]

BLAST of Sed0014971 vs. ExPASy Swiss-Prot
Match: O65693 (Probable ribosome-binding factor A, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g34730 PE=2 SV=2)

HSP 1 Score: 239.6 bits (610), Expect = 3.4e-62
Identity = 145/231 (62.77%), Postives = 173/231 (74.89%), Query Frame = 0


Query: 1   MPHLLQQ-------IHHFPL-KLSSSLANSRFPSQIQASPPWIRSPNSATVVRQRPAVRG 60
           MP+LL         +HH P+  +SS      FP  +           +   +R   +VR 
Sbjct: 1   MPNLLHTNQSHFFFLHHPPIYTVSSKTQAFHFPQSM-----------APVNLRTNLSVR- 60

Query: 61  ATIRCMANSRRVKMVAKQIQRELSDMLLTDKVLKFAILPEASLGADKYLSSLTTITDVEV 120
            T+RCMAN RRVKMVAKQI RELSDMLLTD VL+ A+LPEA+LGAD+YLSSLTTI+DVEV
Sbjct: 61  RTVRCMANPRRVKMVAKQIMRELSDMLLTDTVLQHAVLPEAALGADRYLSSLTTISDVEV 120

Query: 121 SSDLQVVKVYVSVFGDERGKDVAMAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFER 180
           S+DLQVVKVYVSVFGD+RGKDVA+AGLKSKAKYVRS LGKRMKLRLTPE+RFIEDE+ ER
Sbjct: 121 SNDLQVVKVYVSVFGDDRGKDVAIAGLKSKAKYVRSELGKRMKLRLTPEVRFIEDEAMER 180

Query: 181 GSRVIAILDRIKDKKTDTDDEDFEQSELSDAPQDDKDWEGDDADEDIIYVR 224
           GSRVIAILD+IK +K   +     ++E SD+ +DD+DWE DD DEDIIYV+
Sbjct: 181 GSRVIAILDKIKAEKGSGEG----KTEPSDSTEDDQDWEVDDPDEDIIYVK 215

[Close]

BLAST of Sed0014971 vs. ExPASy Swiss-Prot
Match: B0JRP8 (Ribosome-binding factor A OS=Microcystis aeruginosa (strain NIES-843) OX=449447 GN=rbfA PE=3 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.3e-21
Identity = 59/140 (42.14%), Postives = 89/140 (63.57%), Query Frame = 0


Query: 58  MANSRRVKMVAKQIQRELSDMLLTDKVLKFAILPEASLGADKYLSSLTTITDVEVSSDLQ 117
           MAN RRV  V+  I+RE+S MLL +            +  D+  + + ++TDV++S DLQ
Sbjct: 1   MANDRRVSRVSSLIKREVSQMLLME------------IKDDRVGAGMVSVTDVDLSHDLQ 60

Query: 118 VVKVYVSVFGDERGKDVAMAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRVI 177
             K++VS++G+E  K   MAGLK+ A +VR  LG+R++LR TPE+ F+ED S ERG R++
Sbjct: 61  HAKIFVSIYGNEDAKAETMAGLKASAGFVRRELGQRIRLRRTPEVVFLEDSSLERGDRML 120

Query: 178 AILDRIKDKKTDTDDEDFEQ 198
            +LD IK  +   DD+  E+
Sbjct: 121 HLLDHIKTDRPPEDDDSEEE 128

[Close]

BLAST of Sed0014971 vs. ExPASy Swiss-Prot
Match: Q93LL7 (Ribosome-binding factor A OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) OX=63737 GN=rbfA PE=3 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.3e-21
Identity = 63/151 (41.72%), Postives = 90/151 (59.60%), Query Frame = 0


Query: 58  MANSRRVKMVAKQIQRELSDMLLTDKVLKFAILPEASLGADKYLSSLTTITDVEVSSDLQ 117
           MA +RRV  VA+ I+RE+S MLL              +  D+  + + ++TDV+VS DLQ
Sbjct: 1   MATNRRVSRVAELIKREVSQMLLN------------GIKDDRVGTGMVSVTDVDVSGDLQ 60

Query: 118 VVKVYVSVFGDERGKDVAMAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRVI 177
             K+YVS++G +  K   MAGLKS   YVRS LG R++LR TPE+ F+ED S ERG++V+
Sbjct: 61  HAKIYVSIYGTDEAKVETMAGLKSATGYVRSELGARVRLRRTPEVIFLEDRSIERGNKVL 120

Query: 178 AILDRIK-----------DKKTDTDDEDFEQ 198
           A+L ++            +  TD DDE F +
Sbjct: 121 ALLSQLNHDRPPENLLAVEDNTDEDDESFSE 139

[Close]

BLAST of Sed0014971 vs. ExPASy Swiss-Prot
Match: Q8Z0M8 (Ribosome-binding factor A OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=rbfA PE=3 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.3e-21
Identity = 57/134 (42.54%), Postives = 87/134 (64.93%), Query Frame = 0


Query: 58  MANSRRVKMVAKQIQRELSDMLLTDKVLKFAILPEASLGADKYLSSLTTITDVEVSSDLQ 117
           MA +RRV  VA+ I+RE+S ML+              +  D+  + + ++TDV+VS DLQ
Sbjct: 1   MATNRRVSRVAELIKREVSQMLIN------------GIKDDRVGTGMVSVTDVDVSGDLQ 60

Query: 118 VVKVYVSVFGDERGKDVAMAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRVI 177
             K+YVS++G E  K   MAGLKS   +VRS LG R++LR TPE+ FIED S ERG++V+
Sbjct: 61  HAKIYVSIYGTEEAKAETMAGLKSATGFVRSELGARVRLRRTPEVTFIEDRSIERGTKVL 120

Query: 178 AILDRIKDKKTDTD 192
            +L+++++ ++  D
Sbjct: 121 TLLNKLENARSPDD 122

[Close]

BLAST of Sed0014971 vs. ExPASy Swiss-Prot
Match: Q3M9Q8 (Ribosome-binding factor A OS=Trichormus variabilis (strain ATCC 29413 / PCC 7937) OX=240292 GN=rbfA PE=3 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 2.5e-20
Identity = 64/161 (39.75%), Postives = 94/161 (58.39%), Query Frame = 0


Query: 58  MANSRRVKMVAKQIQRELSDMLLTDKVLKFAILPEASLGADKYLSSLTTITDVEVSSDLQ 117
           MA +RRV  VA+ I+RE+S ML+              +  D+  + + ++TDV+VS DLQ
Sbjct: 1   MATNRRVSRVAELIKREVSQMLIN------------GIKDDRVGTGMVSVTDVDVSGDLQ 60

Query: 118 VVKVYVSVFGDERGKDVAMAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRVI 177
             K+YVS++G E  K   MAGLKS   +VRS LG R++LR TPE+ FIED S ERG++V+
Sbjct: 61  HAKIYVSIYGTEEAKAETMAGLKSATGFVRSELGARVRLRRTPEVTFIEDRSIERGTKVL 120

Query: 178 AILDRIKDKKTDTDDEDFEQSELSDAPQDDKDWEGDDADED 219
            +L+++++ ++           L D P  D     D  DED
Sbjct: 121 TLLNKLENARS-----------LDDIPSAD-----DSLDED 133

[Close]

BLAST of Sed0014971 vs. ExPASy TrEMBL
Match: A0A6J1G8H2 (probable ribosome-binding factor A, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111451795 PE=3 SV=1)

HSP 1 Score: 366.7 bits (940), Expect = 6.9e-98
Identity = 198/227 (87.22%), Postives = 211/227 (92.95%), Query Frame = 0


Query: 1   MPHLLQQI----HHFPLKLSSSLANSRFPSQIQASPPWIRSPNSATVVRQRPAVRGATIR 60
           MPHLLQQI    HHFPLKLSSSLA+SRFPSQ  ASPP   SPNS  +VR+RP +RGATIR
Sbjct: 1   MPHLLQQIHPQSHHFPLKLSSSLASSRFPSQFLASPPCFCSPNSVALVRRRPVMRGATIR 60

Query: 61  CMANSRRVKMVAKQIQRELSDMLLTDKVLKFAILPEASLGADKYLSSLTTITDVEVSSDL 120
           CMANSRRVKMV+KQIQRELS+MLLTDKVL+FAILPEASLGADKYLSSLTTITDVE+SSDL
Sbjct: 61  CMANSRRVKMVSKQIQRELSNMLLTDKVLQFAILPEASLGADKYLSSLTTITDVEISSDL 120

Query: 121 QVVKVYVSVFGDERGKDVAMAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRV 180
           QVVKVYVSVFGDERGKD+AMAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRV
Sbjct: 121 QVVKVYVSVFGDERGKDIAMAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRV 180

Query: 181 IAILDRIKDKKTDTDDEDFEQSELSDAPQDDKDWEGDDADEDIIYVR 224
           IAILDRIKD+K + DDED EQSELSDAPQDD+DWE DDADEDIIYV+
Sbjct: 181 IAILDRIKDEKNNIDDEDMEQSELSDAPQDDRDWEEDDADEDIIYVQ 227

[Close]

BLAST of Sed0014971 vs. ExPASy TrEMBL
Match: A0A6J1KXB5 (probable ribosome-binding factor A, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111499618 PE=3 SV=1)

HSP 1 Score: 361.7 bits (927), Expect = 2.2e-96
Identity = 194/227 (85.46%), Postives = 210/227 (92.51%), Query Frame = 0


Query: 1   MPHLLQQI----HHFPLKLSSSLANSRFPSQIQASPPWIRSPNSATVVRQRPAVRGATIR 60
           MPHLLQQI    HHFPLKLSSSLA+SRFPSQ   SPP   SPNS  +VRQRP +RGATI+
Sbjct: 1   MPHLLQQIHPQPHHFPLKLSSSLASSRFPSQFLTSPPCFCSPNSVALVRQRPVMRGATIQ 60

Query: 61  CMANSRRVKMVAKQIQRELSDMLLTDKVLKFAILPEASLGADKYLSSLTTITDVEVSSDL 120
           CMANSRRVKMV+KQIQRELS+MLLTDKVL+FAILPEASLGADKYLSSLTTITDVE+SSDL
Sbjct: 61  CMANSRRVKMVSKQIQRELSNMLLTDKVLQFAILPEASLGADKYLSSLTTITDVEISSDL 120

Query: 121 QVVKVYVSVFGDERGKDVAMAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRV 180
           QVVKVYVSVFGDERGKD+AMAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRV
Sbjct: 121 QVVKVYVSVFGDERGKDIAMAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRV 180

Query: 181 IAILDRIKDKKTDTDDEDFEQSELSDAPQDDKDWEGDDADEDIIYVR 224
           IAILDRIKD+K + DDED E+SELSDAPQDD+DWE D+ADEDIIY++
Sbjct: 181 IAILDRIKDEKNNIDDEDMEKSELSDAPQDDRDWEEDEADEDIIYIQ 227

[Close]

BLAST of Sed0014971 vs. ExPASy TrEMBL
Match: A0A1S4E1P3 (probable ribosome-binding factor A, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103497269 PE=3 SV=1)

HSP 1 Score: 334.0 bits (855), Expect = 5.0e-88
Identity = 188/228 (82.46%), Postives = 201/228 (88.16%), Query Frame = 0


Query: 1   MPH-LLQQIH----HFPLKLSSSLANSRFPSQIQASPPWIRSPNSATVVRQRPAVRGATI 60
           MPH LLQQIH      PLK SSSL +S FPSQ QAS P   SP+S  ++   P +RGATI
Sbjct: 1   MPHLLLQQIHPQFYFSPLKFSSSLQSSPFPSQFQASRPCFYSPSSVNLLPPPPVMRGATI 60

Query: 61  RCMANSRRVKMVAKQIQRELSDMLLTDKVLKFAILPEASLGADKYLSSLTTITDVEVSSD 120
           RCMANSRRVKMVAKQIQRELSDMLLTDKVL+FAILPEASLGADKYLSSLTTITDVEVS+D
Sbjct: 61  RCMANSRRVKMVAKQIQRELSDMLLTDKVLQFAILPEASLGADKYLSSLTTITDVEVSAD 120

Query: 121 LQVVKVYVSVFGDERGKDVAMAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSR 180
           LQVVKVYVSVFGDE+GKDVAMAGLKSKAKYVRSVLGKRMKLRLTPEI FIEDESFERGSR
Sbjct: 121 LQVVKVYVSVFGDEKGKDVAMAGLKSKAKYVRSVLGKRMKLRLTPEICFIEDESFERGSR 180

Query: 181 VIAILDRIKDKKTDTDDEDFEQSELSDAPQDDKDWEGDDADEDIIYVR 224
           VIAILDRIKDKK DT DEDF++ ELSDA  DD+DW+GDDADEDIIYV+
Sbjct: 181 VIAILDRIKDKKKDTIDEDFDEPELSDALDDDRDWKGDDADEDIIYVQ 228

[Close]

BLAST of Sed0014971 vs. ExPASy TrEMBL
Match: A0A5A7TVW4 (Putative ribosome-binding factor A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold280G00030 PE=3 SV=1)

HSP 1 Score: 334.0 bits (855), Expect = 5.0e-88
Identity = 188/228 (82.46%), Postives = 201/228 (88.16%), Query Frame = 0


Query: 1   MPH-LLQQIH----HFPLKLSSSLANSRFPSQIQASPPWIRSPNSATVVRQRPAVRGATI 60
           MPH LLQQIH      PLK SSSL +S FPSQ QAS P   SP+S  ++   P +RGATI
Sbjct: 1   MPHLLLQQIHPQFYFSPLKFSSSLQSSPFPSQFQASRPCFYSPSSVNLLPPPPVMRGATI 60

Query: 61  RCMANSRRVKMVAKQIQRELSDMLLTDKVLKFAILPEASLGADKYLSSLTTITDVEVSSD 120
           RCMANSRRVKMVAKQIQRELSDMLLTDKVL+FAILPEASLGADKYLSSLTTITDVEVS+D
Sbjct: 61  RCMANSRRVKMVAKQIQRELSDMLLTDKVLQFAILPEASLGADKYLSSLTTITDVEVSAD 120

Query: 121 LQVVKVYVSVFGDERGKDVAMAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSR 180
           LQVVKVYVSVFGDE+GKDVAMAGLKSKAKYVRSVLGKRMKLRLTPEI FIEDESFERGSR
Sbjct: 121 LQVVKVYVSVFGDEKGKDVAMAGLKSKAKYVRSVLGKRMKLRLTPEICFIEDESFERGSR 180

Query: 181 VIAILDRIKDKKTDTDDEDFEQSELSDAPQDDKDWEGDDADEDIIYVR 224
           VIAILDRIKDKK DT DEDF++ ELSDA  DD+DW+GDDADEDIIYV+
Sbjct: 181 VIAILDRIKDKKKDTIDEDFDEPELSDALDDDRDWKGDDADEDIIYVQ 228

[Close]

BLAST of Sed0014971 vs. ExPASy TrEMBL
Match: A0A6J1CYL8 (probable ribosome-binding factor A, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111015387 PE=3 SV=1)

HSP 1 Score: 330.9 bits (847), Expect = 4.2e-87
Identity = 185/227 (81.50%), Postives = 196/227 (86.34%), Query Frame = 0


Query: 1   MPHLLQQIH----HFPLKLSSSLANSRFPSQIQASPPWIRSPNSATVVRQRPAVRGATIR 60
           MPHLLQQIH    H PLKLSSS      P Q Q  PPWI SPN   ++R RP   GATIR
Sbjct: 1   MPHLLQQIHPHPYHSPLKLSSSTR----PFQFQPPPPWISSPNPIALLRPRPVTGGATIR 60

Query: 61  CMANSRRVKMVAKQIQRELSDMLLTDKVLKFAILPEASLGADKYLSSLTTITDVEVSSDL 120
           CMANSRRVKMVAKQIQRELSDMLLTDKVL++AILPEASLGADKYLSSLTTITDVEVS+DL
Sbjct: 61  CMANSRRVKMVAKQIQRELSDMLLTDKVLQYAILPEASLGADKYLSSLTTITDVEVSADL 120

Query: 121 QVVKVYVSVFGDERGKDVAMAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRV 180
           QVVKVYVSVFGDERGKDVA+AGLKSKAKYVRSVLG+RMKLRLTPEIRFIEDESFERGSRV
Sbjct: 121 QVVKVYVSVFGDERGKDVAIAGLKSKAKYVRSVLGRRMKLRLTPEIRFIEDESFERGSRV 180

Query: 181 IAILDRIKDKKTDTDDEDFEQSELSDAPQDDKDWEGDDADEDIIYVR 224
           IAILDRIKD+K DT     E SELS+ PQDD+DWEGDDADEDIIYV+
Sbjct: 181 IAILDRIKDEKKDT-----ELSELSNTPQDDRDWEGDDADEDIIYVQ 218

[Close]

BLAST of Sed0014971 vs. TAIR 10
Match: AT4G34730.1 (ribosome-binding factor A family protein )

HSP 1 Score: 239.6 bits (610), Expect = 2.4e-63
Identity = 145/231 (62.77%), Postives = 173/231 (74.89%), Query Frame = 0


Query: 1   MPHLLQQ-------IHHFPL-KLSSSLANSRFPSQIQASPPWIRSPNSATVVRQRPAVRG 60
           MP+LL         +HH P+  +SS      FP  +           +   +R   +VR 
Sbjct: 1   MPNLLHTNQSHFFFLHHPPIYTVSSKTQAFHFPQSM-----------APVNLRTNLSVR- 60

Query: 61  ATIRCMANSRRVKMVAKQIQRELSDMLLTDKVLKFAILPEASLGADKYLSSLTTITDVEV 120
            T+RCMAN RRVKMVAKQI RELSDMLLTD VL+ A+LPEA+LGAD+YLSSLTTI+DVEV
Sbjct: 61  RTVRCMANPRRVKMVAKQIMRELSDMLLTDTVLQHAVLPEAALGADRYLSSLTTISDVEV 120

Query: 121 SSDLQVVKVYVSVFGDERGKDVAMAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFER 180
           S+DLQVVKVYVSVFGD+RGKDVA+AGLKSKAKYVRS LGKRMKLRLTPE+RFIEDE+ ER
Sbjct: 121 SNDLQVVKVYVSVFGDDRGKDVAIAGLKSKAKYVRSELGKRMKLRLTPEVRFIEDEAMER 180

Query: 181 GSRVIAILDRIKDKKTDTDDEDFEQSELSDAPQDDKDWEGDDADEDIIYVR 224
           GSRVIAILD+IK +K   +     ++E SD+ +DD+DWE DD DEDIIYV+
Sbjct: 181 GSRVIAILDKIKAEKGSGEG----KTEPSDSTEDDQDWEVDDPDEDIIYVK 215

The following BLAST results are available for this feature:

BLAST of Sed0014971 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022948118.1	1.4e-97	87.22	probable ribosome-binding factor A, chloroplastic [Cucurbita moschata]	[more]
XP_023534592.1	4.1e-97	86.78	probable ribosome-binding factor A, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
KAG6605037.1	7.1e-97	87.56	putative ribosome-binding factor A, chloroplastic, partial [Cucurbita argyrosper...	[more]
XP_023006992.1	4.6e-96	85.46	probable ribosome-binding factor A, chloroplastic [Cucurbita maxima]	[more]
XP_038900542.1	6.8e-92	85.02	probable ribosome-binding factor A, chloroplastic [Benincasa hispida]	[more]

BLAST of Sed0014971 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O65693	3.4e-62	62.77	Probable ribosome-binding factor A, chloroplastic OS=Arabidopsis thaliana OX=370...	[more]
B0JRP8	1.3e-21	42.14	Ribosome-binding factor A OS=Microcystis aeruginosa (strain NIES-843) OX=449447 ...	[more]
Q93LL7	1.3e-21	41.72	Ribosome-binding factor A OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) ...	[more]
Q8Z0M8	1.3e-21	42.54	Ribosome-binding factor A OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576...	[more]
Q3M9Q8	2.5e-20	39.75	Ribosome-binding factor A OS=Trichormus variabilis (strain ATCC 29413 / PCC 7937...	[more]

BLAST of Sed0014971 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G8H2	6.9e-98	87.22	probable ribosome-binding factor A, chloroplastic OS=Cucurbita moschata OX=3662 ...	[more]
A0A6J1KXB5	2.2e-96	85.46	probable ribosome-binding factor A, chloroplastic OS=Cucurbita maxima OX=3661 GN...	[more]
A0A1S4E1P3	5.0e-88	82.46	probable ribosome-binding factor A, chloroplastic OS=Cucumis melo OX=3656 GN=LOC...	[more]
A0A5A7TVW4	5.0e-88	82.46	Putative ribosome-binding factor A OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A6J1CYL8	4.2e-87	81.50	probable ribosome-binding factor A, chloroplastic OS=Momordica charantia OX=3673...	[more]

BLAST of Sed0014971 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G34730.1	2.4e-63	62.77	ribosome-binding factor A family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000238	Ribosome-binding factor A	PFAM	PF02033	RBFA	coord: 63..180 e-value: 6.9E-28 score: 97.2
IPR000238	Ribosome-binding factor A	TIGRFAM	TIGR00082	TIGR00082	coord: 58..184 e-value: 4.4E-24 score: 83.2
IPR000238	Ribosome-binding factor A	PANTHER	PTHR33515	RIBOSOME-BINDING FACTOR A, CHLOROPLASTIC-RELATED	coord: 49..222
IPR000238	Ribosome-binding factor A	HAMAP	MF_00003	RbfA	coord: 62..180 score: 22.081985
IPR015946	K homology domain-like, alpha/beta	GENE3D	3.30.300.20		coord: 58..174 e-value: 7.5E-36 score: 124.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 187..223
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 194..216
IPR020053	Ribosome-binding factor A, conserved site	PROSITE	PS01319	RBFA	coord: 146..167
IPR023799	Ribosome-binding factor A domain superfamily	SUPERFAMILY	89919	Ribosome-binding factor A, RbfA	coord: 58..183

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0014971.1	Sed0014971.1	mRNA
Sed0014971.2	Sed0014971.2	mRNA
Sed0014971.3	Sed0014971.3	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006364	rRNA processing
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0043024	ribosomal small subunit binding