Sed0014935 (gene) Chayote v1

Overview
NameSed0014935
Typegene
OrganismSechium edule (Chayote v1)
Description30S ribosomal protein S21, chloroplastic-like
LocationLG08: 29318737 .. 29321142 (-)
RNA-Seq ExpressionSed0014935
SyntenySed0014935
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TATAGATGGAAAATAGTTGAGAACCATTGGATTGGAAAATCTATCCACAAACAAGGGAGAGAGAATTGGTTCAATTTGCAAAAAACAGAAAGAGAGTAATGGGTCTTAAAACAACAAAGAAAAAAAAAAAGAAAAATTGCATAAAATAATCCAAAAAAAAAAAAAAACAGTGAGGAGATAAGAACTGAAATCCAAAAATCCTTTTGAAATTGCTCCATTTTCAACCACACCCAAATCCATCCATGGCTTCTCTCTCCAGCTTCTTCTCCTTCCTCTTACCCTCTAAACAGCCGCCCCCAAAACCCCAACCGCCGTCGATCGCCTCCCCGTCTCCGGCGGCAACCCAATTTCAAACCCTAAAATCCAGAGACGGAGATGGGTTGTCGTCAATGTCCGTCCAACCTCCGACTCATTTGTCGCCGGAACTGGCCTCCGTCATCTGCCCCTCTCTGGCTTTCGCCAACACCATGTTCTTCAGTTCGGGCTATAATGTGCAGGTCATTGTGGATGATAACGAGCCGGAGGAGCGGCTTCTCAACAGATTCCGGCGAGAGGTTATGAGGGCCGGTGTCATTCAGGAGTGTAGGAGACGCAAATTCTTTGAAAACCCTCATGACGTTAAGAAGCGTAAGTCTCGCGAGGCTGCCAAACGTAACCGCCGCAGGTATCAATCTTTCTCATTCTTTCTTTGTTGATTTGAGTTTTTTGGGGTTTCTGTTCTGTTTGAATTGGATTTCATTTTTAAGGAAGGTAATGCTAATAGTAATAGGTGTCTTATCCAACCATACAATTGAGTGGTCTAGTACTCAAAAGGGTCTAAAATTAATTTACGGCAGATTTCCTTTAGAGCGAGAAGGTTTGTTTGGTGACATCCGGCAAGCTATGCACAAGTTGGCTCAAATAGTCATCACCAATATCAAAAAACAAAAAATGGATGCCTTATCCACCAAGTTGGTCTAGTACTCAAAAGGGTGTGTTTGGAGCATGGACCCGTTTATGATAGACGGAAGGTTATGATAAACGGTAGGTTATTATAAATGGTATTTGAGGGGTTAATTATATAACAAAAAGTAATATATGTAAGGTTGAGATAATGGGCATGTAGGTTTAGATAAACGGGCACGTAGGTTTAGGTAACCAACGTTTATAATAAACGGTGGGGCAAACATCGGTTATGTTATTATATCCAACCCGGCCATTGACATAAATGGGGGCCCAAACACACCCTAAATGTCTTGTGAATTTGAAGGCTTGGTAGGGATTTGTATATCTCTTGAATGGACTATGTAAGTTTATAATAATAAGTGAATGAGTTCGAGCATGGTGAACAGCTACCTAAGTTAACTTTGTAGTCTCCTTCTCACATGTTAAGACAAGGGTTAAGCTTTGATATTGTAGAACAAAAGAACAACCTTACTTCAACAAGGTTCTTATGAGTCCTTGACATTATAGATTCAACCAGAGTGATCAACTTACTGAAAATTAGTTTATGAAAATTAACTTGACAACCAAATGTAGTTGGATCAGATTGATGTTACATGAAAATAGTTGTAGTCTACGTAAGCTGATCTGGACACTCACGGTTATGGATTACAAAAATTGATGTGGAATAAAAGAAAAAATAGGCACACGTCCTTGATATGTTTTGCCTTTACTCTGATTGAGTAAATAAGGACATGGAACTCAAGGTAATAGAAATTAGGGAGGGAAAGAAAAGTGTCAACAGTAAATCATATCCTTGAGAAAGTGTGGATTCTCCTGTTCCCATACAAAAACCGAAGGCTGAGGGTTTGGTTTTCCACCAGCAAAATTTTTTACCTAAGACCACGAGGATATATTTCAATTGTTATTCTATTTGTTGTAAATGTAATCTTCATCATTATAGTGGAACTAGTGTTGGGAGTCCTTTTGATTGTATGTCCTTGTACATCTTTTCATATTTCTCTATGAAAACTTGTTTTATAAGTGGGATTTATGTGCTAAGTTTTTTATTTTATTGTTTTTGGTAATGAAACTGAGTTATGATTTGGTGGATGAACAGGCGGCCACAGCCAAGATTTACACCACAAACCAAGCAGGATGTGCCTGCAACCAAGCAAGAAGCTGATGATGACAACTGGGATTTACCTGAAGCAGGCATTCCTTATTAACATGTTTTCTGCTTATCTTTTGATTTTGGTGTGCCTGTAATGTAAGTTGTTTTCCATGTAATATCTTTTTTAGTTGACAAGATTTTGCATTACTTCTTTTCAGTAAGTAGAAATGTTTATTCCTTTTACATATCAATTATCAGTCGGATTATTAACGATAGAGGGATTGTGAGTTTGTTCGGGGGGATTGGCTCAATCCCATGTTTGGATGAAATAGCTCCATAAAACCCACATAAAATGTTCCAATGAGTTTTAC

mRNA sequence

TATAGATGGAAAATAGTTGAGAACCATTGGATTGGAAAATCTATCCACAAACAAGGGAGAGAGAATTGGTTCAATTTGCAAAAAACAGAAAGAGAGTAATGGGTCTTAAAACAACAAAGAAAAAAAAAAAGAAAAATTGCATAAAATAATCCAAAAAAAAAAAAAAACAGTGAGGAGATAAGAACTGAAATCCAAAAATCCTTTTGAAATTGCTCCATTTTCAACCACACCCAAATCCATCCATGGCTTCTCTCTCCAGCTTCTTCTCCTTCCTCTTACCCTCTAAACAGCCGCCCCCAAAACCCCAACCGCCGTCGATCGCCTCCCCGTCTCCGGCGGCAACCCAATTTCAAACCCTAAAATCCAGAGACGGAGATGGGTTGTCGTCAATGTCCGTCCAACCTCCGACTCATTTGTCGCCGGAACTGGCCTCCGTCATCTGCCCCTCTCTGGCTTTCGCCAACACCATGTTCTTCAGTTCGGGCTATAATGTGCAGGTCATTGTGGATGATAACGAGCCGGAGGAGCGGCTTCTCAACAGATTCCGGCGAGAGGTTATGAGGGCCGGTGTCATTCAGGAGTGTAGGAGACGCAAATTCTTTGAAAACCCTCATGACGTTAAGAAGCGTAAGTCTCGCGAGGCTGCCAAACGTAACCGCCGCAGGCGGCCACAGCCAAGATTTACACCACAAACCAAGCAGGATGTGCCTGCAACCAAGCAAGAAGCTGATGATGACAACTGGGATTTACCTGAAGCAGGCATTCCTTATTAACATGTTTTCTGCTTATCTTTTGATTTTGGTGTGCCTGTAATGTAAGTTGTTTTCCATGTAATATCTTTTTTAGTTGACAAGATTTTGCATTACTTCTTTTCAGTAAGTAGAAATGTTTATTCCTTTTACATATCAATTATCAGTCGGATTATTAACGATAGAGGGATTGTGAGTTTGTTCGGGGGGATTGGCTCAATCCCATGTTTGGATGAAATAGCTCCATAAAACCCACATAAAATGTTCCAATGAGTTTTAC

Coding sequence (CDS)

ATGGCTTCTCTCTCCAGCTTCTTCTCCTTCCTCTTACCCTCTAAACAGCCGCCCCCAAAACCCCAACCGCCGTCGATCGCCTCCCCGTCTCCGGCGGCAACCCAATTTCAAACCCTAAAATCCAGAGACGGAGATGGGTTGTCGTCAATGTCCGTCCAACCTCCGACTCATTTGTCGCCGGAACTGGCCTCCGTCATCTGCCCCTCTCTGGCTTTCGCCAACACCATGTTCTTCAGTTCGGGCTATAATGTGCAGGTCATTGTGGATGATAACGAGCCGGAGGAGCGGCTTCTCAACAGATTCCGGCGAGAGGTTATGAGGGCCGGTGTCATTCAGGAGTGTAGGAGACGCAAATTCTTTGAAAACCCTCATGACGTTAAGAAGCGTAAGTCTCGCGAGGCTGCCAAACGTAACCGCCGCAGGCGGCCACAGCCAAGATTTACACCACAAACCAAGCAGGATGTGCCTGCAACCAAGCAAGAAGCTGATGATGACAACTGGGATTTACCTGAAGCAGGCATTCCTTATTAA

Protein sequence

MASLSSFFSFLLPSKQPPPKPQPPSIASPSPAATQFQTLKSRDGDGLSSMSVQPPTHLSPELASVICPSLAFANTMFFSSGYNVQVIVDDNEPEERLLNRFRREVMRAGVIQECRRRKFFENPHDVKKRKSREAAKRNRRRRPQPRFTPQTKQDVPATKQEADDDNWDLPEAGIPY
Homology
[Close]
BLAST of Sed0014935 vs. NCBI nr
Match: XP_023527532.1 (30S ribosomal protein S21, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 279.3 bits (713), Expect = 2.4e-71
Identity = 154/182 (84.62%), Postives = 157/182 (86.26%), Query Frame = 0 

Query: 1   MASLSSFFSFLLPSKQPPPKPQPPSIASPSP---AATQFQTLKSRDGDGLSSMSVQPPTH 60
           MASLSSFFSFLLPSK PPPKP  P IASPSP   AA QFQTLKSRDG  ++    Q P H
Sbjct: 1   MASLSSFFSFLLPSKPPPPKPLQPLIASPSPANQAAAQFQTLKSRDG-SVALSPQQAPKH 60

Query: 61  ---LSPELASVICPSLAFANTMFFSSGYNVQVIVDDNEPEERLLNRFRREVMRAGVIQEC 120
              LS ELASVICPSLAFANTMFF S YNVQVIVDDNEPEERLLNRFRREVMRAGVIQEC
Sbjct: 61  SEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQEC 120

Query: 121 RRRKFFENPHDVKKRKSREAAKRNRRRRPQPRFTPQTKQDVPATKQEADDDNWDLPEAGI 177
           +RRKFFENPHDVKKRKSREAAKRNRRRRPQ RFTPQ KQDVPATKQEADDDNWDLPE GI
Sbjct: 121 KRRKFFENPHDVKKRKSREAAKRNRRRRPQQRFTPQDKQDVPATKQEADDDNWDLPEEGI 180

[Close]
BLAST of Sed0014935 vs. NCBI nr
Match: XP_022982709.1 (30S ribosomal protein S21, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 278.9 bits (712), Expect = 3.1e-71
Identity = 153/182 (84.07%), Postives = 157/182 (86.26%), Query Frame = 0 

Query: 1   MASLSSFFSFLLPSKQPPPKPQPPSIASPSP---AATQFQTLKSRDGDGLSSMSVQPPTH 60
           MASLSSFFSFLLPSK PPPKP  P IASPSP   AA QFQTLKSRDG  ++    Q P H
Sbjct: 1   MASLSSFFSFLLPSKPPPPKPLQPLIASPSPANQAAAQFQTLKSRDG-SVALSPQQAPKH 60

Query: 61  ---LSPELASVICPSLAFANTMFFSSGYNVQVIVDDNEPEERLLNRFRREVMRAGVIQEC 120
              LS ELASVICPSLAFANTMFF S YNVQVIVDDNEPEERLLNRFRREVMRAGVIQEC
Sbjct: 61  SEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQEC 120

Query: 121 RRRKFFENPHDVKKRKSREAAKRNRRRRPQPRFTPQTKQDVPATKQEADDDNWDLPEAGI 177
           +RRKFFENPHD+KKRKSREAAKRNRRRRPQ RFTPQ KQDVPATKQEADDDNWDLPE GI
Sbjct: 121 KRRKFFENPHDIKKRKSREAAKRNRRRRPQQRFTPQDKQDVPATKQEADDDNWDLPEEGI 180

[Close]
BLAST of Sed0014935 vs. NCBI nr
Match: KAG6581093.1 (30S ribosomal protein S21, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 276.6 bits (706), Expect = 1.5e-70
Identity = 153/181 (84.53%), Postives = 155/181 (85.64%), Query Frame = 0 

Query: 1   MASLSSFFSFLLPSKQPPPKPQPPSIASPSP---AATQFQTLKSRDGD-GLSSMSVQPPT 60
           MASLSSFFSFLLPSK PPPKP  P IASPSP   AA QFQTLKSRDG   LS       +
Sbjct: 1   MASLSSFFSFLLPSKPPPPKPLQPLIASPSPANQAAAQFQTLKSRDGSVALSPQQASKHS 60

Query: 61  H-LSPELASVICPSLAFANTMFFSSGYNVQVIVDDNEPEERLLNRFRREVMRAGVIQECR 120
             LS ELASVICPSLAFANTMFF S YNVQVIVDDNEPEERLLNRFRREVMRAGVIQEC+
Sbjct: 61  EPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQECK 120

Query: 121 RRKFFENPHDVKKRKSREAAKRNRRRRPQPRFTPQTKQDVPATKQEADDDNWDLPEAGIP 177
           RRKFFENPHDVKKRKSREAAKRNRRRRPQ RFTPQ KQDVPATKQEADDDNWDLPE GIP
Sbjct: 121 RRKFFENPHDVKKRKSREAAKRNRRRRPQQRFTPQDKQDVPATKQEADDDNWDLPEEGIP 180

[Close]
BLAST of Sed0014935 vs. NCBI nr
Match: XP_022934586.1 (30S ribosomal protein S21, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 276.6 bits (706), Expect = 1.5e-70
Identity = 153/181 (84.53%), Postives = 155/181 (85.64%), Query Frame = 0 

Query: 1   MASLSSFFSFLLPSKQPPPKPQPPSIASPSP---AATQFQTLKSRDGD-GLSSMSVQPPT 60
           MASLSSFFSFLLPSK PPPKP  P IASPSP   AA QFQTLKSRDG   LS       +
Sbjct: 32  MASLSSFFSFLLPSKPPPPKPLQPLIASPSPANQAAAQFQTLKSRDGSVALSPQQASKHS 91

Query: 61  H-LSPELASVICPSLAFANTMFFSSGYNVQVIVDDNEPEERLLNRFRREVMRAGVIQECR 120
             LS ELASVICPSLAFANTMFF S YNVQVIVDDNEPEERLLNRFRREVMRAGVIQEC+
Sbjct: 92  EPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQECK 151

Query: 121 RRKFFENPHDVKKRKSREAAKRNRRRRPQPRFTPQTKQDVPATKQEADDDNWDLPEAGIP 177
           RRKFFENPHDVKKRKSREAAKRNRRRRPQ RFTPQ KQDVPATKQEADDDNWDLPE GIP
Sbjct: 152 RRKFFENPHDVKKRKSREAAKRNRRRRPQQRFTPQDKQDVPATKQEADDDNWDLPEEGIP 211

[Close]
BLAST of Sed0014935 vs. NCBI nr
Match: KAG7017820.1 (30S ribosomal protein S21, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 276.2 bits (705), Expect = 2.0e-70
Identity = 153/181 (84.53%), Postives = 155/181 (85.64%), Query Frame = 0 

Query: 1   MASLSSFFSFLLPSKQPPPKPQPPSIASPSP---AATQFQTLKSRDGD-GLSSMSVQPPT 60
           MASLSSFFSFLLPSK PPPKP  P IASPSP   AA QFQTLKSRDG   LS       +
Sbjct: 26  MASLSSFFSFLLPSKPPPPKPLQPLIASPSPANQAADQFQTLKSRDGSVALSPQQASKHS 85

Query: 61  H-LSPELASVICPSLAFANTMFFSSGYNVQVIVDDNEPEERLLNRFRREVMRAGVIQECR 120
             LS ELASVICPSLAFANTMFF S YNVQVIVDDNEPEERLLNRFRREVMRAGVIQEC+
Sbjct: 86  EPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQECK 145

Query: 121 RRKFFENPHDVKKRKSREAAKRNRRRRPQPRFTPQTKQDVPATKQEADDDNWDLPEAGIP 177
           RRKFFENPHDVKKRKSREAAKRNRRRRPQ RFTPQ KQDVPATKQEADDDNWDLPE GIP
Sbjct: 146 RRKFFENPHDVKKRKSREAAKRNRRRRPQQRFTPQDKQDVPATKQEADDDNWDLPEEGIP 205

[Close]
BLAST of Sed0014935 vs. ExPASy Swiss-Prot
Match: P82024 (30S ribosomal protein S21, chloroplastic OS=Spinacia oleracea OX=3562 GN=rps21 PE=1 SV=2)

HSP 1 Score: 147.9 bits (372), Expect = 1.1e-34
Identity = 88/177 (49.72%), Postives = 113/177 (63.84%), Query Frame = 0 

Query: 2   ASLSSFFSFLLPSKQPPPKPQPPSIASPSPAATQFQTLKSRDGDGLSSMSVQPPTHLSPE 61
           +SL +F S L PS    P    P   +P+  ++Q Q   S       + ++        +
Sbjct: 5   SSLLNFLSPLFPSNTSLPPSSNPKFPNPNSLSSQ-QNSISISSKKHENAAIAKKEEYPGD 64

Query: 62  LASVICPSLAFANTMFFSSGYNVQVIVDDNEPEERLLNRFRREVMRAGVIQECRRRKFFE 121
           L +V+CPSLAF+NT++F S YNVQV+VDDNE EERLLNRFRREVMRAGVIQEC+RR++FE
Sbjct: 65  LMAVVCPSLAFSNTLYFRSAYNVQVLVDDNENEERLLNRFRREVMRAGVIQECKRRRYFE 124

Query: 122 NPHDVKKRKSREAAKRNRRRRPQP--RFTPQTKQDVPATKQEADDDNWDLPEAGIPY 177
           N  + KKRK REAAKRN RRR  P     P  ++     K+E D DNWD+PE G P+
Sbjct: 125 NKQEEKKRKHREAAKRNSRRRRGPFRGPFPGKEEATKVDKKEDDGDNWDMPEGGAPF 180

[Close]
BLAST of Sed0014935 vs. ExPASy Swiss-Prot
Match: B8GPU0 (30S ribosomal protein S21 OS=Thioalkalivibrio sulfidiphilus (strain HL-EbGR7) OX=396588 GN=rpsU PE=3 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 1.4e-05
Identity = 27/56 (48.21%), Postives = 38/56 (67.86%), Query Frame = 0 

Query: 86  VIVDDNEPEERLLNRFRREVMRAGVIQECRRRKFFENPHDVKKRKSREAAKRNRRR 142
           V V +NEP E  L RF+R   +AGV+ E RRR+F+E P +++KRK+  A KR  +R
Sbjct: 4   VRVKENEPFEVALRRFKRTCEKAGVLTEVRRREFYEKPTEIRKRKAAAAVKRQAKR 59

[Close]
BLAST of Sed0014935 vs. ExPASy Swiss-Prot
Match: A1WW12 (30S ribosomal protein S21 OS=Halorhodospira halophila (strain DSM 244 / SL1) OX=349124 GN=rpsU PE=3 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 3.1e-05
Identity = 27/56 (48.21%), Postives = 37/56 (66.07%), Query Frame = 0 

Query: 86  VIVDDNEPEERLLNRFRREVMRAGVIQECRRRKFFENPHDVKKRKSREAAKRNRRR 142
           V V +NEP E  L RF+R   +AGV+ E RRR+++E P  V+KRK   A KR+ +R
Sbjct: 4   VKVRENEPFEVALRRFKRSCEKAGVLSEIRRREYYEKPTQVRKRKQAAAVKRHMKR 59

[Close]
BLAST of Sed0014935 vs. ExPASy Swiss-Prot
Match: B4U8H0 (30S ribosomal protein S21 OS=Hydrogenobaculum sp. (strain Y04AAS1) OX=380749 GN=rpsU PE=3 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 4.0e-05
Identity = 25/52 (48.08%), Postives = 35/52 (67.31%), Query Frame = 0 

Query: 86  VIVDDNEPEERLLNRFRREVMRAGVIQECRRRKFFENPHDVKKRKSREAAKR 138
           VIV D+E  E+ + RF++ V R G++ E +RR+F+E P   KKRK R A KR
Sbjct: 4   VIVGDSESFEKAMKRFKKVVEREGILSELKRREFYEKPSQKKKRKERAARKR 55

[Close]
BLAST of Sed0014935 vs. ExPASy Swiss-Prot
Match: B2I7X5 (30S ribosomal protein S21 OS=Xylella fastidiosa (strain M23) OX=405441 GN=rpsU PE=3 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 8.9e-05
Identity = 27/56 (48.21%), Postives = 37/56 (66.07%), Query Frame = 0 

Query: 86  VIVDDNEPEERLLNRFRREVMRAGVIQECRRRKFFENPHDVKKRKSREAAKRNRRR 142
           V V +NEP E  L RF+R   +AG++ E R+R+F+E P   +KRK+  A KRN RR
Sbjct: 4   VKVRENEPFEFALRRFKRICEKAGILAETRKREFYEKPTQERKRKAAAAVKRNIRR 59

[Close]
BLAST of Sed0014935 vs. ExPASy TrEMBL
Match: A0A6J1J5C2 (30S ribosomal protein S21, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111481494 PE=3 SV=1)

HSP 1 Score: 278.9 bits (712), Expect = 1.5e-71
Identity = 153/182 (84.07%), Postives = 157/182 (86.26%), Query Frame = 0 

Query: 1   MASLSSFFSFLLPSKQPPPKPQPPSIASPSP---AATQFQTLKSRDGDGLSSMSVQPPTH 60
           MASLSSFFSFLLPSK PPPKP  P IASPSP   AA QFQTLKSRDG  ++    Q P H
Sbjct: 1   MASLSSFFSFLLPSKPPPPKPLQPLIASPSPANQAAAQFQTLKSRDG-SVALSPQQAPKH 60

Query: 61  ---LSPELASVICPSLAFANTMFFSSGYNVQVIVDDNEPEERLLNRFRREVMRAGVIQEC 120
              LS ELASVICPSLAFANTMFF S YNVQVIVDDNEPEERLLNRFRREVMRAGVIQEC
Sbjct: 61  SEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQEC 120

Query: 121 RRRKFFENPHDVKKRKSREAAKRNRRRRPQPRFTPQTKQDVPATKQEADDDNWDLPEAGI 177
           +RRKFFENPHD+KKRKSREAAKRNRRRRPQ RFTPQ KQDVPATKQEADDDNWDLPE GI
Sbjct: 121 KRRKFFENPHDIKKRKSREAAKRNRRRRPQQRFTPQDKQDVPATKQEADDDNWDLPEEGI 180

[Close]
BLAST of Sed0014935 vs. ExPASy TrEMBL
Match: A0A6J1F281 (30S ribosomal protein S21, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111441722 PE=3 SV=1)

HSP 1 Score: 276.6 bits (706), Expect = 7.4e-71
Identity = 153/181 (84.53%), Postives = 155/181 (85.64%), Query Frame = 0 

Query: 1   MASLSSFFSFLLPSKQPPPKPQPPSIASPSP---AATQFQTLKSRDGD-GLSSMSVQPPT 60
           MASLSSFFSFLLPSK PPPKP  P IASPSP   AA QFQTLKSRDG   LS       +
Sbjct: 32  MASLSSFFSFLLPSKPPPPKPLQPLIASPSPANQAAAQFQTLKSRDGSVALSPQQASKHS 91

Query: 61  H-LSPELASVICPSLAFANTMFFSSGYNVQVIVDDNEPEERLLNRFRREVMRAGVIQECR 120
             LS ELASVICPSLAFANTMFF S YNVQVIVDDNEPEERLLNRFRREVMRAGVIQEC+
Sbjct: 92  EPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQECK 151

Query: 121 RRKFFENPHDVKKRKSREAAKRNRRRRPQPRFTPQTKQDVPATKQEADDDNWDLPEAGIP 177
           RRKFFENPHDVKKRKSREAAKRNRRRRPQ RFTPQ KQDVPATKQEADDDNWDLPE GIP
Sbjct: 152 RRKFFENPHDVKKRKSREAAKRNRRRRPQQRFTPQDKQDVPATKQEADDDNWDLPEEGIP 211

[Close]
BLAST of Sed0014935 vs. ExPASy TrEMBL
Match: A0A1S3BNG4 (uncharacterized protein LOC103491780 OS=Cucumis melo OX=3656 GN=LOC103491780 PE=3 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 4.2e-66
Identity = 149/184 (80.98%), Postives = 155/184 (84.24%), Query Frame = 0 

Query: 1   MASLSSFFSFLLPSKQPPPKPQPPSIA-SPSP---AATQFQTLKSRDGDGLSSMSVQPPT 60
           MASLSSFFSFLLPSK PPPKP  P IA SPSP   AA QFQTLKSRDG  ++    Q P 
Sbjct: 49  MASLSSFFSFLLPSKPPPPKPHQPLIASSPSPPNHAAAQFQTLKSRDG-SVALKPQQGPN 108

Query: 61  H---LSPELASVICPSLAFANTMFFSSGYNVQVIVDDNEPEERLLNRFRREVMRAGVIQE 120
           H   LS ELASVICPSLAFANTMFF S YNVQVIVDDNEPEERLLNRFRREVMRAGVIQE
Sbjct: 109 HSEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQE 168

Query: 121 CRRRKFFENPHDVKKRKSREAAKRNRRRRPQPRFTPQTKQDVPATKQEADDDNWDLP-EA 177
           C+RR+FFEN  DV+KRK+REAAKRNRRRRPQ RFTPQ KQDVPATKQEADDDNWDLP EA
Sbjct: 169 CKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEEA 228

[Close]
BLAST of Sed0014935 vs. ExPASy TrEMBL
Match: A0A6J1JQ53 (30S ribosomal protein S21, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111486728 PE=3 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 5.5e-66
Identity = 142/178 (79.78%), Postives = 154/178 (86.52%), Query Frame = 0 

Query: 1   MASLSSFFSFLLPSKQPPPKPQPPSIASPSPAATQFQTLKSRDGDGLSSMSVQPPTH--- 60
           MASLS+FFSFLLPSK PPPKPQ P IASPSP ATQFQTLKSRD + +S   +Q P+H   
Sbjct: 1   MASLSTFFSFLLPSKPPPPKPQQPFIASPSP-ATQFQTLKSRD-ESVSLKPLQGPSHSEP 60

Query: 61  LSPELASVICPSLAFANTMFFSSGYNVQVIVDDNEPEERLLNRFRREVMRAGVIQECRRR 120
           LS ELASVICPSLAFANTMFF+S YNVQVIVDDNEPEERLL RFRREVMRAGVIQEC+RR
Sbjct: 61  LSAELASVICPSLAFANTMFFNSAYNVQVIVDDNEPEERLLGRFRREVMRAGVIQECKRR 120

Query: 121 KFFENPHDVKKRKSREAAKRNRRRRPQPRFTPQTKQDVPATKQEADDDNWDLPEAGIP 176
           ++FEN  D +KRK+REAAKRNRRRRP  R TP+ KQDVPATKQEADDDNWDLPE GIP
Sbjct: 121 RYFENTQDTRKRKTREAAKRNRRRRPFTRITPENKQDVPATKQEADDDNWDLPEEGIP 176

[Close]
BLAST of Sed0014935 vs. ExPASy TrEMBL
Match: A0A5D3C287 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold108G001120 PE=3 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 1.6e-65
Identity = 148/184 (80.43%), Postives = 154/184 (83.70%), Query Frame = 0 

Query: 1   MASLSSFFSFLLPSKQPPPKPQPPSIA-SPSP---AATQFQTLKSRDGDGLSSMSVQPPT 60
           MASLSSFFSFLLPSK PPPKP  P IA SPSP   AA QFQTLKSRDG  ++    Q P 
Sbjct: 1   MASLSSFFSFLLPSKPPPPKPHQPLIASSPSPPNHAAAQFQTLKSRDG-SVALKPQQGPN 60

Query: 61  H---LSPELASVICPSLAFANTMFFSSGYNVQVIVDDNEPEERLLNRFRREVMRAGVIQE 120
           H   LS ELASVICPSLAFANTMFF S YNVQVIVDDNEPEERLLNRFRREVMRAGVIQE
Sbjct: 61  HSEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQE 120

Query: 121 CRRRKFFENPHDVKKRKSREAAKRNRRRRPQPRFTPQTKQDVPATKQEADDDNWDLP-EA 177
           C+RR+FFEN  DV+KRK+REAAKRNRRRRPQ RFTPQ KQDVPATKQEADDDNWDLP E 
Sbjct: 121 CKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEEE 180

[Close]
BLAST of Sed0014935 vs. TAIR 10
Match: AT3G27160.1 (Ribosomal protein S21 family protein )

HSP 1 Score: 175.6 bits (444), Expect = 3.4e-44
Identity = 96/181 (53.04%), Postives = 131/181 (72.38%), Query Frame = 0 

Query: 3   SLSSFFSFLLPSKQPPPKPQPPSIASPSPAATQFQTLKSRDGDGLSSMSVQ----PPTHL 62
           SL+SF SF+ P K       PP++  PSP  +Q    + R+   + SM+V+      + L
Sbjct: 6   SLTSFISFISPFKSQTKPTPPPNLTLPSPTISQ----RRRNDLAIESMAVEETSSTASSL 65

Query: 63  SPELASVICPSLAFANTMFFSSGYNVQVIVDDNEPEERLLNRFRREVMRAGVIQECRRRK 122
           S ELASVICPSLA++NT+FFSSGYNVQV V+DNE EERL+NRFRREVMR GVIQEC+RR+
Sbjct: 66  SSELASVICPSLAYSNTLFFSSGYNVQVFVEDNESEERLVNRFRREVMRTGVIQECKRRR 125

Query: 123 FFENPHDVKKRKSREAAKRNRRRRPQPRFTPQTKQDVPAT----KQEADDDNWDLPEAGI 176
           +FEN  D KKR++R+AAKRN++RRPQ RFT +T+++  A     K++ ++DNW++P   +
Sbjct: 126 YFENKQDEKKRRTRDAAKRNKKRRPQARFTQETREEAAAATKSKKKDEEEDNWEMPGGDV 182

[Close]
BLAST of Sed0014935 vs. TAIR 10
Match: AT5G63300.1 (Ribosomal protein S21 family protein )

HSP 1 Score: 100.5 bits (249), Expect = 1.4e-21
Identity = 74/184 (40.22%), Postives = 105/184 (57.07%), Query Frame = 0 

Query: 1   MASLSSFFSFLLPSKQPPPKPQPPSIASPSPAATQFQTLKSRDGDGLSSMSVQPPTHLSP 60
           + SLS   S LL SK P P    P I  PS       ++ +R    LS  +         
Sbjct: 6   IVSLSELLSSLLSSKPPSPSSLKP-ITLPS-------SVSARTSQHLSMTTKILTAEHDD 65

Query: 61  ELASVICPSLAFANTMFF-SSGYNVQVIVDDNEPEERLLNRFRREVMRAGVIQECRRRKF 120
            +  V  PSLA AN +FF SS YNV+V+  D E EE+L+N F+R   RAGV+QE RRR+F
Sbjct: 66  VINRVAYPSLANANLVFFKSSYYNVEVVPKDGESEEQLVNDFKRSCFRAGVLQESRRRRF 125

Query: 121 FENPHDVKKRKSREAAKRNRRRRPQPRFTPQTKQDV-----PATKQEADDDNWDLP--EA 177
           FE+  + K RK++EAAK+ R+RRP P+  P +  ++      A++++  DD+W+LP  + 
Sbjct: 126 FESSLEKKTRKTKEAAKKYRKRRPNPKPKPLSTSEIRKHNRNASREDEQDDHWELPPEDI 181

[Close]
BLAST of Sed0014935 vs. TAIR 10
Match: AT5G63300.2 (Ribosomal protein S21 family protein )

HSP 1 Score: 81.6 bits (200), Expect = 6.7e-16
Identity = 61/142 (42.96%), Postives = 81/142 (57.04%), Query Frame = 0 

Query: 1   MASLSSFFSFLLPSKQPPPKPQPPSIASPSPAATQFQTLKSRDGDGLSSMSVQPPTHLSP 60
           + SLS   S LL SK P P    P I  PS       ++ +R    LS  +         
Sbjct: 6   IVSLSELLSSLLSSKPPSPSSLKP-ITLPS-------SVSARTSQHLSMTTKILTAEHDD 65

Query: 61  ELASVICPSLAFANTMFF-SSGYNVQVIVDDNEPEERLLNRFRREVMRAGVIQECRRRKF 120
            +  V  PSLA AN +FF SS YNV+V+  D E EE+L+N F+R   RAGV+QE RRR+F
Sbjct: 66  VINRVAYPSLANANLVFFKSSYYNVEVVPKDGESEEQLVNDFKRSCFRAGVLQESRRRRF 125

Query: 121 FENPHDVKKRKSREAAKRNRRR 142
           FE+  + K RK++EAAK+ R+R
Sbjct: 126 FESSLEKKTRKTKEAAKKYRKR 139

The following BLAST results are available for this feature:
BLAST of Sed0014935 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023527532.12.4e-7184.6230S ribosomal protein S21, chloroplastic-like [Cucurbita pepo subsp. pepo][more]
XP_022982709.13.1e-7184.0730S ribosomal protein S21, chloroplastic-like [Cucurbita maxima][more]
KAG6581093.11.5e-7084.5330S ribosomal protein S21, chloroplastic, partial [Cucurbita argyrosperma subsp.... [more]
XP_022934586.11.5e-7084.5330S ribosomal protein S21, chloroplastic-like [Cucurbita moschata][more]
KAG7017820.12.0e-7084.5330S ribosomal protein S21, chloroplastic, partial [Cucurbita argyrosperma subsp.... [more]
BLAST of Sed0014935 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P820241.1e-3449.7230S ribosomal protein S21, chloroplastic OS=Spinacia oleracea OX=3562 GN=rps21 P... [more]
B8GPU01.4e-0548.2130S ribosomal protein S21 OS=Thioalkalivibrio sulfidiphilus (strain HL-EbGR7) OX... [more]
A1WW123.1e-0548.2130S ribosomal protein S21 OS=Halorhodospira halophila (strain DSM 244 / SL1) OX=... [more]
B4U8H04.0e-0548.0830S ribosomal protein S21 OS=Hydrogenobaculum sp. (strain Y04AAS1) OX=380749 GN=... [more]
B2I7X58.9e-0548.2130S ribosomal protein S21 OS=Xylella fastidiosa (strain M23) OX=405441 GN=rpsU P... [more]
BLAST of Sed0014935 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1J5C21.5e-7184.0730S ribosomal protein S21, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC... [more]
A0A6J1F2817.4e-7184.5330S ribosomal protein S21, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=L... [more]
A0A1S3BNG44.2e-6680.98uncharacterized protein LOC103491780 OS=Cucumis melo OX=3656 GN=LOC103491780 PE=... [more]
A0A6J1JQ535.5e-6679.7830S ribosomal protein S21, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC... [more]
A0A5D3C2871.6e-6580.43Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of Sed0014935 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G27160.13.4e-4453.04Ribosomal protein S21 family protein [more]
AT5G63300.11.4e-2140.22Ribosomal protein S21 family protein [more]
AT5G63300.26.7e-1642.96Ribosomal protein S21 family protein [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001911Ribosomal protein S21PRINTSPR00976RIBOSOMALS21coord: 95..104
score: 43.33
coord: 87..95
score: 42.59
coord: 119..129
score: 39.39
coord: 107..117
score: 43.18
IPR001911Ribosomal protein S21PFAMPF01165Ribosomal_S21coord: 85..139
e-value: 3.0E-20
score: 71.7
IPR001911Ribosomal protein S21TIGRFAMTIGR00030TIGR00030coord: 84..141
e-value: 7.6E-15
score: 52.5
IPR001911Ribosomal protein S21PANTHERPTHR21109MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S21coord: 2..142
IPR001911Ribosomal protein S21HAMAPMF_00358Ribosomal_S21coord: 83..139
score: 14.907252
IPR038380Ribosomal protein S21 superfamilyGENE3D1.20.5.1150Ribosomal protein S8coord: 98..136
e-value: 2.5E-13
score: 51.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 14..28
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..33
NoneNo IPR availablePANTHERPTHR21109:SF17PROTEIN S21 FAMILY PROTEIN, PUTATIVE-RELATEDcoord: 2..142

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0014935.1Sed0014935.1mRNA
Sed0014935.2Sed0014935.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome