Sed0014916 (gene) Chayote v1

Overview


Name	Sed0014916
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Ribulose bisphosphate carboxylase small subunit
Location	LG07: 36359124 .. 36360686 (+)
RNA-Seq Expression	Sed0014916
Synteny	Sed0014916

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTGGCCATAACCATCGCAATGCGATAAAAGGCTTAAAAGAGGTGGAGAAGAGCCGAAGAGGAAGGGAAGAAGGCAGTGCCCATCTTATAAATACAGCACCGCCCCCCTTAGCCATAACCAGCAACAGCACTTTGTGTACTCTTTCCTACCACATAACCAAAGGCTTTCCCAATGGCTTCCATCGCCTCCTCCGCCGCTGTCGCCTCCGTCACCCGGGCCTCCCCGGCTCAAGCTACCATGGTCGCCCCCTTCACCGGCCTCAAATCCTCCGCCGGCTTCCCCGTCACCCGCAAGAACAACGACATCACCACCCTTGCTAGCAACGGCGGGAGAGTTCAGTGCATGAAGGTACATACCTCAATTGTCACATTTCTTCCTTTCTTCATTCATTCATGTCCAATTAAGTTCAATTATTGAAAATTTGAGGGTCTTACATCTTTAGGTTAAATTATGGATCTAACTTAAAGTTGATGAATTGAGATAAATTTAAGATTAAATTACTATTTTAGCTTTTAGGCTTTTGATTTTATTTTATTTTGGTCCTTACAAGTTCAAATTTTGAATTAATAAAATTATCATTTTTCTCTATATATATTTTTTTAAAAATGTGTTAACACATTTTGTCTTTTGTATTAAAATTACTAAAATAATTGAAATAAGTTTTGTTAATATTAATATTCAAAATTATCATAAGATTAATTTAAACTTTTTTATTGATAGTAAAATGAAATAGATTAAAAAATTAATTTAGAGGTACATTTTGGTAACCTAAATATTGATGAGTACTTAGGCCCAAATTGAACAAATTGAATACATAGGTAGGCATATTTAGGTCATGAAAAAAGATATTTTTTTACCCTAAATTAAACTATATGAAGTTGCATTATGGGTATGATTTTATTTGTTGTTGGTGTGTGGTTGTGAAAAAAGGTGTGGCCACCACTGGGATTGAAGAAGTTCGAGACTCTATCCTACCTGCCCGACCTCACCCAGGAGCAGTTGTTGAAGGAAATTGACTACCTTATCCGAAGCAAGTGGATTCCCTGCGTTGAGTTCGAGCTCGAGAAGGGATTCGTGTACCGTGAGAACCACAGGTCCCCGGGGTACTACGACGGACGCTACTGGACCATGTGGAAGCTCCCCATGTACGGCTGCACCGACGCGTCCCAGGTCCTGAACGAGGTCCTCGAGTGCAAGAAGGAGTACCCCATTGCCTTCGTTAGAATCATCGGCTTCGACAATGTCCGTCAAGTTCAGTGCATCAGTTTCATTGCCGCCAAGCCCGACAACTATGTTTAATAACCCCGCGCTCTCTCTTTCTTTGCTTCCAAGCTTTCGCCTCATTTCTTTTTAATCTTTCGTTTTGGTCTGTCGTATCTTCAAGCTTTGTTTATTTTCCGGATTTTCCAATTCGAATTGGAATAAATGATGCTTTGATTTGTTGTTGAATATCATGTCCATTTCTTTATGTAATGCACCATCTTCTTCTTTCAGTTCCAAATATCATATTGTCTCTGCAATTCTCTAACTTCATTGCTATAAAAATTGGGGAATTTTGGATTG

mRNA sequence

GTGGCCATAACCATCGCAATGCGATAAAAGGCTTAAAAGAGGTGGAGAAGAGCCGAAGAGGAAGGGAAGAAGGCAGTGCCCATCTTATAAATACAGCACCGCCCCCCTTAGCCATAACCAGCAACAGCACTTTGTGTACTCTTTCCTACCACATAACCAAAGGCTTTCCCAATGGCTTCCATCGCCTCCTCCGCCGCTGTCGCCTCCGTCACCCGGGCCTCCCCGGCTCAAGCTACCATGGTCGCCCCCTTCACCGGCCTCAAATCCTCCGCCGGCTTCCCCGTCACCCGCAAGAACAACGACATCACCACCCTTGCTAGCAACGGCGGGAGAGTTCAGTGCATGAAGGTGTGGCCACCACTGGGATTGAAGAAGTTCGAGACTCTATCCTACCTGCCCGACCTCACCCAGGAGCAGTTGTTGAAGGAAATTGACTACCTTATCCGAAGCAAGTGGATTCCCTGCGTTGAGTTCGAGCTCGAGAAGGGATTCGTGTACCGTGAGAACCACAGGTCCCCGGGGTACTACGACGGACGCTACTGGACCATGTGGAAGCTCCCCATGTACGGCTGCACCGACGCGTCCCAGGTCCTGAACGAGGTCCTCGAGTGCAAGAAGGAGTACCCCATTGCCTTCGTTAGAATCATCGGCTTCGACAATGTCCGTCAAGTTCAGTGCATCAGTTTCATTGCCGCCAAGCCCGACAACTATGTTTAATAACCCCGCGCTCTCTCTTTCTTTGCTTCCAAGCTTTCGCCTCATTTCTTTTTAATCTTTCGTTTTGGTCTGTCGTATCTTCAAGCTTTGTTTATTTTCCGGATTTTCCAATTCGAATTGGAATAAATGATGCTTTGATTTGTTGTTGAATATCATGTCCATTTCTTTATGTAATGCACCATCTTCTTCTTTCAGTTCCAAATATCATATTGTCTCTGCAATTCTCTAACTTCATTGCTATAAAAATTGGGGAATTTTGGATTG

Coding sequence (CDS)

ATGGCTTCCATCGCCTCCTCCGCCGCTGTCGCCTCCGTCACCCGGGCCTCCCCGGCTCAAGCTACCATGGTCGCCCCCTTCACCGGCCTCAAATCCTCCGCCGGCTTCCCCGTCACCCGCAAGAACAACGACATCACCACCCTTGCTAGCAACGGCGGGAGAGTTCAGTGCATGAAGGTGTGGCCACCACTGGGATTGAAGAAGTTCGAGACTCTATCCTACCTGCCCGACCTCACCCAGGAGCAGTTGTTGAAGGAAATTGACTACCTTATCCGAAGCAAGTGGATTCCCTGCGTTGAGTTCGAGCTCGAGAAGGGATTCGTGTACCGTGAGAACCACAGGTCCCCGGGGTACTACGACGGACGCTACTGGACCATGTGGAAGCTCCCCATGTACGGCTGCACCGACGCGTCCCAGGTCCTGAACGAGGTCCTCGAGTGCAAGAAGGAGTACCCCATTGCCTTCGTTAGAATCATCGGCTTCGACAATGTCCGTCAAGTTCAGTGCATCAGTTTCATTGCCGCCAAGCCCGACAACTATGTTTAA

Protein sequence

MASIASSAAVASVTRASPAQATMVAPFTGLKSSAGFPVTRKNNDITTLASNGGRVQCMKVWPPLGLKKFETLSYLPDLTQEQLLKEIDYLIRSKWIPCVEFELEKGFVYRENHRSPGYYDGRYWTMWKLPMYGCTDASQVLNEVLECKKEYPIAFVRIIGFDNVRQVQCISFIAAKPDNYV

Homology

[Close]

BLAST of Sed0014916 vs. NCBI nr
Match: XP_022945823.1 (ribulose bisphosphate carboxylase small chain, chloroplastic-like [Cucurbita moschata] >KAG6573959.1 Ribulose bisphosphate carboxylase small chain, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 316.2 bits (809), Expect = 1.8e-82
Identity = 152/181 (83.98%), Postives = 165/181 (91.16%), Query Frame = 0


Query: 1   MASIASS-AAVASVTRASPAQATMVAPFTGLKSSAGFPVTRKNNDITTLASNGGRVQCMK 60
           MASI SS AAVASV RASPAQA+MVAP+TGLKS+AGFPVTRKNNDITTLASNG RV+CMK
Sbjct: 1   MASIVSSAAAVASVNRASPAQASMVAPYTGLKSTAGFPVTRKNNDITTLASNGSRVRCMK 60

Query: 61  VWPPLGLKKFETLSYLPDLTQEQLLKEIDYLIRSKWIPCVEFELEKGFVYRENHRSPGYY 120
           VWPPLGLKKFETLSYLPDLT EQLLKEI YL+RS W+PC+EFELEKGFVYRENHRSPGYY
Sbjct: 61  VWPPLGLKKFETLSYLPDLTSEQLLKEIGYLLRSGWVPCIEFELEKGFVYRENHRSPGYY 120

Query: 121 DGRYWTMWKLPMYGCTDASQVLNEVLECKKEYPIAFVRIIGFDNVRQVQCISFIAAKPDN 180
           DGRYWTMWKLPM+GCTD +QV  E+ E KKEYP AF+R+IGFDNVRQVQCISFI  KP +
Sbjct: 121 DGRYWTMWKLPMFGCTDPAQVAAEIEEAKKEYPNAFIRVIGFDNVRQVQCISFIVYKPAS 180

[Close]

BLAST of Sed0014916 vs. NCBI nr
Match: XP_022150468.1 (ribulose bisphosphate carboxylase small chain, chloroplastic-like [Momordica charantia])

HSP 1 Score: 315.8 bits (808), Expect = 2.3e-82
Identity = 149/179 (83.24%), Postives = 163/179 (91.06%), Query Frame = 0


Query: 2   ASIASSAAVASVTRASPAQATMVAPFTGLKSSAGFPVTRKNNDITTLASNGGRVQCMKVW 61
           +SI SSAAVASV RASPAQA+MVAPFTGLKS+A FPVTRK NDITTLA+NGGRVQCMKVW
Sbjct: 4   SSIVSSAAVASVNRASPAQASMVAPFTGLKSAAAFPVTRKTNDITTLANNGGRVQCMKVW 63

Query: 62  PPLGLKKFETLSYLPDLTQEQLLKEIDYLIRSKWIPCVEFELEKGFVYRENHRSPGYYDG 121
           PPLG KKFETLSYLPD+T+ QLLKEIDYLIRS WIPC+EFELE GFVYRE+H+SPGYYDG
Sbjct: 64  PPLGKKKFETLSYLPDMTETQLLKEIDYLIRSGWIPCIEFELEHGFVYREHHKSPGYYDG 123

Query: 122 RYWTMWKLPMYGCTDASQVLNEVLECKKEYPIAFVRIIGFDNVRQVQCISFIAAKPDNY 181
           RYWTMWKLPMYGCTDASQV+ E+ E KKEYP AF+R+IGFDN RQVQCISFI  KP +Y
Sbjct: 124 RYWTMWKLPMYGCTDASQVVKEIEEAKKEYPSAFIRVIGFDNKRQVQCISFIVYKPSSY 182

[Close]

BLAST of Sed0014916 vs. NCBI nr
Match: XP_023513414.1 (ribulose bisphosphate carboxylase small chain, chloroplastic-like [Cucurbita pepo subsp. pepo] >XP_023513481.1 ribulose bisphosphate carboxylase small chain, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 315.8 bits (808), Expect = 2.3e-82
Identity = 150/179 (83.80%), Postives = 163/179 (91.06%), Query Frame = 0


Query: 2   ASIASSAAVASVTRASPAQATMVAPFTGLKSSAGFPVTRKNNDITTLASNGGRVQCMKVW 61
           +SI SSAAVASV RASPAQA+MVAPF GLKS+AGFPVTRKNNDITTLASNG RV+CMKVW
Sbjct: 3   SSIVSSAAVASVNRASPAQASMVAPFVGLKSTAGFPVTRKNNDITTLASNGSRVKCMKVW 62

Query: 62  PPLGLKKFETLSYLPDLTQEQLLKEIDYLIRSKWIPCVEFELEKGFVYRENHRSPGYYDG 121
           PPLGLKKFETLSYLPDLT EQLLKEI YL+RS W+PC+EFELEKGFVYRENHRSPGYYDG
Sbjct: 63  PPLGLKKFETLSYLPDLTGEQLLKEIAYLLRSGWVPCIEFELEKGFVYRENHRSPGYYDG 122

Query: 122 RYWTMWKLPMYGCTDASQVLNEVLECKKEYPIAFVRIIGFDNVRQVQCISFIAAKPDNY 181
           RYWTMWKLPM+GCTD +QV  E+ E KKEYP AF+R+IGFDNVRQVQCISFI  KP +Y
Sbjct: 123 RYWTMWKLPMFGCTDPAQVAAEIEEAKKEYPNAFIRVIGFDNVRQVQCISFIVYKPASY 181

[Close]

BLAST of Sed0014916 vs. NCBI nr
Match: XP_023542956.1 (ribulose bisphosphate carboxylase small chain, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 315.1 bits (806), Expect = 4.0e-82
Identity = 152/181 (83.98%), Postives = 165/181 (91.16%), Query Frame = 0


Query: 1   MASIASS-AAVASVTRASPAQATMVAPFTGLKSSAGFPVTRKNNDITTLASNGGRVQCMK 60
           MASI SS AAVASV RASPAQA+MVAP+TGLKS+AGFPVTRKNNDITTLASNG RV+CMK
Sbjct: 1   MASIVSSAAAVASVNRASPAQASMVAPYTGLKSTAGFPVTRKNNDITTLASNGSRVRCMK 60

Query: 61  VWPPLGLKKFETLSYLPDLTQEQLLKEIDYLIRSKWIPCVEFELEKGFVYRENHRSPGYY 120
           VWPPLGLKKFETLSYLPDLT EQLLKEI YL+RS W+PC+EFELEKGFVYRENHRSPGYY
Sbjct: 61  VWPPLGLKKFETLSYLPDLTGEQLLKEIAYLLRSGWVPCIEFELEKGFVYRENHRSPGYY 120

Query: 121 DGRYWTMWKLPMYGCTDASQVLNEVLECKKEYPIAFVRIIGFDNVRQVQCISFIAAKPDN 180
           DGRYWTMWKLPM+GCTD +QV  E+ E KKEYP AF+R+IGFDNVRQVQCISFI  KP +
Sbjct: 121 DGRYWTMWKLPMFGCTDPAQVAAEIEEAKKEYPNAFIRVIGFDNVRQVQCISFIVYKPAS 180

[Close]

BLAST of Sed0014916 vs. NCBI nr
Match: XP_022957356.1 (ribulose bisphosphate carboxylase small chain, chloroplastic-like [Cucurbita moschata] >KAG6601287.1 Ribulose bisphosphate carboxylase small chain, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7032075.1 Ribulose bisphosphate carboxylase small chain, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 314.7 bits (805), Expect = 5.2e-82
Identity = 149/179 (83.24%), Postives = 162/179 (90.50%), Query Frame = 0


Query: 2   ASIASSAAVASVTRASPAQATMVAPFTGLKSSAGFPVTRKNNDITTLASNGGRVQCMKVW 61
           +SI SSAAVASV RASPAQA+MVAPF GLKS+A FPVTRKNNDITTLASNG RV+CMKVW
Sbjct: 3   SSIVSSAAVASVNRASPAQASMVAPFVGLKSTAAFPVTRKNNDITTLASNGSRVKCMKVW 62

Query: 62  PPLGLKKFETLSYLPDLTQEQLLKEIDYLIRSKWIPCVEFELEKGFVYRENHRSPGYYDG 121
           PPLGLKKFETLSYLPDLT EQLLKEI YL+RS W+PC+EFELEKGFVYRENHRSPGYYDG
Sbjct: 63  PPLGLKKFETLSYLPDLTSEQLLKEIAYLLRSGWVPCIEFELEKGFVYRENHRSPGYYDG 122

Query: 122 RYWTMWKLPMYGCTDASQVLNEVLECKKEYPIAFVRIIGFDNVRQVQCISFIAAKPDNY 181
           RYWTMWKLPM+GCTD +QV  E+ E KKEYP AF+R+IGFDNVRQVQCISFI  KP +Y
Sbjct: 123 RYWTMWKLPMFGCTDPAQVAAEIEEAKKEYPNAFIRVIGFDNVRQVQCISFIVYKPPSY 181

[Close]

BLAST of Sed0014916 vs. ExPASy Swiss-Prot
Match: P08474 (Ribulose bisphosphate carboxylase small subunit, chloroplastic OS=Cucumis sativus OX=3659 GN=RBCS PE=2 SV=1)

HSP 1 Score: 301.6 bits (771), Expect = 6.0e-81
Identity = 142/177 (80.23%), Postives = 161/177 (90.96%), Query Frame = 0


Query: 2   ASIASSAAVASVTRASPAQATMVAPFTGLKSSAGFPVTRKNN-DITTLASNGGRVQCMKV 61
           +SI SSAAVASV  ASPAQA+MVAPFTGLKSSAGFP+TRKNN DITTLASN G+VQCMKV
Sbjct: 3   SSILSSAAVASVNSASPAQASMVAPFTGLKSSAGFPITRKNNVDITTLASNAGKVQCMKV 62

Query: 62  WPPLGLKKFETLSYLPDLTQEQLLKEIDYLIRSKWIPCVEFELEKGFVYRENHRSPGYYD 121
           WPPLGL+KFETLSYLPD++ EQL KE DYL+R+ W+PCVEF++  GFVYRENHRSPG+YD
Sbjct: 63  WPPLGLRKFETLSYLPDMSNEQLSKECDYLLRNGWVPCVEFDIGSGFVYRENHRSPGFYD 122

Query: 122 GRYWTMWKLPMYGCTDASQVLNEVLECKKEYPIAFVRIIGFDNVRQVQCISFIAAKP 178
           GRYWTMWKLPM+GCTD+SQV+ E+ E KKEYP AF+R+IGFDNVRQVQCISFIA KP
Sbjct: 123 GRYWTMWKLPMFGCTDSSQVIQEIEEAKKEYPDAFIRVIGFDNVRQVQCISFIAYKP 179

[Close]

BLAST of Sed0014916 vs. ExPASy Swiss-Prot
Match: Q39746 (Ribulose bisphosphate carboxylase small subunit, chloroplastic 4 OS=Flaveria pringlei OX=4226 GN=RBCS4 PE=2 SV=1)

HSP 1 Score: 298.5 bits (763), Expect = 5.1e-80
Identity = 138/180 (76.67%), Postives = 163/180 (90.56%), Query Frame = 0


Query: 1   MASIASSAAVASVTRASPAQATMVAPFTGLKSSAGFPVTRKNNDITTLASNGGRVQCMKV 60
           MASI+S+  VA+V+RA+PAQA MVAPFTGLKS+A FP T+K ND +TL SNGGRVQCMKV
Sbjct: 1   MASISST--VATVSRAAPAQANMVAPFTGLKSNAAFPATKKANDFSTLPSNGGRVQCMKV 60

Query: 61  WPPLGLKKFETLSYLPDLTQEQLLKEIDYLIRSKWIPCVEFELEKGFVYRENHRSPGYYD 120
           WPPLG KK+ETLSYLP+LT+ QL KE+DYL+R+KW+PC+EFELE GFVYREN RSPGYYD
Sbjct: 61  WPPLGKKKYETLSYLPNLTEAQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYD 120

Query: 121 GRYWTMWKLPMYGCTDASQVLNEVLECKKEYPIAFVRIIGFDNVRQVQCISFIAAKPDNY 180
           GRYWTMWKLPM+GCTD++QV+ E+ ECKKEYP A++RIIGFDNVRQVQCISFIA+KPD +
Sbjct: 121 GRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFIASKPDGF 178

[Close]

BLAST of Sed0014916 vs. ExPASy Swiss-Prot
Match: P08705 (Ribulose bisphosphate carboxylase small subunit, chloroplastic OS=Helianthus annuus OX=4232 GN=RBCS PE=2 SV=1)

HSP 1 Score: 298.1 bits (762), Expect = 6.6e-80
Identity = 138/180 (76.67%), Postives = 160/180 (88.89%), Query Frame = 0


Query: 1   MASIASSAAVASVTRASPAQATMVAPFTGLKSSAGFPVTRKNNDITTLASNGGRVQCMKV 60
           MASI+SS  VA+V+R +PAQA MVAPFTGLKS+A FP T+K ND +TL SNGGRVQCMKV
Sbjct: 1   MASISSS--VATVSRTAPAQANMVAPFTGLKSNAAFPTTKKANDFSTLPSNGGRVQCMKV 60

Query: 61  WPPLGLKKFETLSYLPDLTQEQLLKEIDYLIRSKWIPCVEFELEKGFVYRENHRSPGYYD 120
           WPPLGLKK+ETLSYLP LT+ QL KE+DYL+R KW+PC+EFELE GFVYREN RSPGYYD
Sbjct: 61  WPPLGLKKYETLSYLPPLTETQLAKEVDYLLRKKWVPCLEFELEHGFVYRENARSPGYYD 120

Query: 121 GRYWTMWKLPMYGCTDASQVLNEVLECKKEYPIAFVRIIGFDNVRQVQCISFIAAKPDNY 180
           GRYWTMWKLPM+GCTD++QV+ E+ ECKKEYP A++RIIGFDNVRQVQCI FIA++PD Y
Sbjct: 121 GRYWTMWKLPMFGCTDSAQVMKELAECKKEYPQAWIRIIGFDNVRQVQCIMFIASRPDGY 178

[Close]

BLAST of Sed0014916 vs. ExPASy Swiss-Prot
Match: O65194 (Ribulose bisphosphate carboxylase small subunit, chloroplastic OS=Medicago sativa OX=3879 GN=RBCS PE=2 SV=1)

HSP 1 Score: 294.7 bits (753), Expect = 7.3e-79
Identity = 138/179 (77.09%), Postives = 159/179 (88.83%), Query Frame = 0


Query: 3   SIASSAAVASVTRASPAQATMVAPFTGLKSSAGFPVTRK-NNDITTLASNGGRVQCMKVW 62
           ++ SSAAV +V RAS AQA +VAPFTGLKSSAGFPVT+K NNDIT++ASNGGRV CM+VW
Sbjct: 2   ALISSAAVTTVNRASSAQANLVAPFTGLKSSAGFPVTKKTNNDITSIASNGGRVNCMQVW 61

Query: 63  PPLGLKKFETLSYLPDLTQEQLLKEIDYLIRSKWIPCVEFELEKGFVYRENHRSPGYYDG 122
           PP+G KKFETLSYLP LT+EQL KE++YLIR  WIPC+EFELEKGFVYRENHRSPGYYDG
Sbjct: 62  PPVGKKKFETLSYLPPLTEEQLAKEVEYLIRKGWIPCLEFELEKGFVYRENHRSPGYYDG 121

Query: 123 RYWTMWKLPMYGCTDASQVLNEVLECKKEYPIAFVRIIGFDNVRQVQCISFIAAKPDNY 181
           RYWTMW+LP++G TD+SQVL E+ +CK EYP +F+RIIGFDNVRQVQCISFIA  P NY
Sbjct: 122 RYWTMWRLPLFGATDSSQVLKELADCKAEYPDSFIRIIGFDNVRQVQCISFIAHTPKNY 180

[Close]

BLAST of Sed0014916 vs. ExPASy Swiss-Prot
Match: Q39744 (Ribulose bisphosphate carboxylase small subunit, chloroplastic 2 OS=Flaveria pringlei OX=4226 GN=RBCS2 PE=2 SV=1)

HSP 1 Score: 294.3 bits (752), Expect = 9.6e-79
Identity = 135/180 (75.00%), Postives = 162/180 (90.00%), Query Frame = 0


Query: 1   MASIASSAAVASVTRASPAQATMVAPFTGLKSSAGFPVTRKNNDITTLASNGGRVQCMKV 60
           MASI+S+  VA+V+RA+PAQA MVAPFTGLKS+  FP T+K ND +TL SNGGRVQCMKV
Sbjct: 1   MASISST--VATVSRAAPAQANMVAPFTGLKSNVAFPATKKANDFSTLPSNGGRVQCMKV 60

Query: 61  WPPLGLKKFETLSYLPDLTQEQLLKEIDYLIRSKWIPCVEFELEKGFVYRENHRSPGYYD 120
           WPPLG K++ETLSYLP+LT+ QL KE+DYL+R+KW+PC+EFELE GFVYREN RSPGYYD
Sbjct: 61  WPPLGKKRYETLSYLPNLTEAQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYD 120

Query: 121 GRYWTMWKLPMYGCTDASQVLNEVLECKKEYPIAFVRIIGFDNVRQVQCISFIAAKPDNY 180
           GRYWTMWKLPM+GCTD++QV+ E+ ECKKEYP A++RIIGFDNVRQVQCISFIA+KP+ +
Sbjct: 121 GRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFIASKPEGF 178

[Close]

BLAST of Sed0014916 vs. ExPASy TrEMBL
Match: A0A6J1G227 (Ribulose bisphosphate carboxylase small subunit OS=Cucurbita moschata OX=3662 GN=LOC111449952 PE=3 SV=1)

HSP 1 Score: 316.2 bits (809), Expect = 8.7e-83
Identity = 152/181 (83.98%), Postives = 165/181 (91.16%), Query Frame = 0


Query: 1   MASIASS-AAVASVTRASPAQATMVAPFTGLKSSAGFPVTRKNNDITTLASNGGRVQCMK 60
           MASI SS AAVASV RASPAQA+MVAP+TGLKS+AGFPVTRKNNDITTLASNG RV+CMK
Sbjct: 1   MASIVSSAAAVASVNRASPAQASMVAPYTGLKSTAGFPVTRKNNDITTLASNGSRVRCMK 60

Query: 61  VWPPLGLKKFETLSYLPDLTQEQLLKEIDYLIRSKWIPCVEFELEKGFVYRENHRSPGYY 120
           VWPPLGLKKFETLSYLPDLT EQLLKEI YL+RS W+PC+EFELEKGFVYRENHRSPGYY
Sbjct: 61  VWPPLGLKKFETLSYLPDLTSEQLLKEIGYLLRSGWVPCIEFELEKGFVYRENHRSPGYY 120

Query: 121 DGRYWTMWKLPMYGCTDASQVLNEVLECKKEYPIAFVRIIGFDNVRQVQCISFIAAKPDN 180
           DGRYWTMWKLPM+GCTD +QV  E+ E KKEYP AF+R+IGFDNVRQVQCISFI  KP +
Sbjct: 121 DGRYWTMWKLPMFGCTDPAQVAAEIEEAKKEYPNAFIRVIGFDNVRQVQCISFIVYKPAS 180

[Close]

BLAST of Sed0014916 vs. ExPASy TrEMBL
Match: A0A6J1D9J4 (Ribulose bisphosphate carboxylase small subunit OS=Momordica charantia OX=3673 GN=LOC111018606 PE=3 SV=1)

HSP 1 Score: 315.8 bits (808), Expect = 1.1e-82
Identity = 149/179 (83.24%), Postives = 163/179 (91.06%), Query Frame = 0


Query: 2   ASIASSAAVASVTRASPAQATMVAPFTGLKSSAGFPVTRKNNDITTLASNGGRVQCMKVW 61
           +SI SSAAVASV RASPAQA+MVAPFTGLKS+A FPVTRK NDITTLA+NGGRVQCMKVW
Sbjct: 4   SSIVSSAAVASVNRASPAQASMVAPFTGLKSAAAFPVTRKTNDITTLANNGGRVQCMKVW 63

Query: 62  PPLGLKKFETLSYLPDLTQEQLLKEIDYLIRSKWIPCVEFELEKGFVYRENHRSPGYYDG 121
           PPLG KKFETLSYLPD+T+ QLLKEIDYLIRS WIPC+EFELE GFVYRE+H+SPGYYDG
Sbjct: 64  PPLGKKKFETLSYLPDMTETQLLKEIDYLIRSGWIPCIEFELEHGFVYREHHKSPGYYDG 123

Query: 122 RYWTMWKLPMYGCTDASQVLNEVLECKKEYPIAFVRIIGFDNVRQVQCISFIAAKPDNY 181
           RYWTMWKLPMYGCTDASQV+ E+ E KKEYP AF+R+IGFDN RQVQCISFI  KP +Y
Sbjct: 124 RYWTMWKLPMYGCTDASQVVKEIEEAKKEYPSAFIRVIGFDNKRQVQCISFIVYKPSSY 182

[Close]

BLAST of Sed0014916 vs. ExPASy TrEMBL
Match: A0A6J1GZ01 (Ribulose bisphosphate carboxylase small subunit OS=Cucurbita moschata OX=3662 GN=LOC111458779 PE=3 SV=1)

HSP 1 Score: 314.7 bits (805), Expect = 2.5e-82
Identity = 149/179 (83.24%), Postives = 162/179 (90.50%), Query Frame = 0


Query: 2   ASIASSAAVASVTRASPAQATMVAPFTGLKSSAGFPVTRKNNDITTLASNGGRVQCMKVW 61
           +SI SSAAVASV RASPAQA+MVAPF GLKS+A FPVTRKNNDITTLASNG RV+CMKVW
Sbjct: 3   SSIVSSAAVASVNRASPAQASMVAPFVGLKSTAAFPVTRKNNDITTLASNGSRVKCMKVW 62

Query: 62  PPLGLKKFETLSYLPDLTQEQLLKEIDYLIRSKWIPCVEFELEKGFVYRENHRSPGYYDG 121
           PPLGLKKFETLSYLPDLT EQLLKEI YL+RS W+PC+EFELEKGFVYRENHRSPGYYDG
Sbjct: 63  PPLGLKKFETLSYLPDLTSEQLLKEIAYLLRSGWVPCIEFELEKGFVYRENHRSPGYYDG 122

Query: 122 RYWTMWKLPMYGCTDASQVLNEVLECKKEYPIAFVRIIGFDNVRQVQCISFIAAKPDNY 181
           RYWTMWKLPM+GCTD +QV  E+ E KKEYP AF+R+IGFDNVRQVQCISFI  KP +Y
Sbjct: 123 RYWTMWKLPMFGCTDPAQVAAEIEEAKKEYPNAFIRVIGFDNVRQVQCISFIVYKPPSY 181

[Close]

BLAST of Sed0014916 vs. ExPASy TrEMBL
Match: A0A6J1HZN6 (Ribulose bisphosphate carboxylase small subunit OS=Cucurbita maxima OX=3661 GN=LOC111467689 PE=3 SV=1)

HSP 1 Score: 313.9 bits (803), Expect = 4.3e-82
Identity = 150/181 (82.87%), Postives = 165/181 (91.16%), Query Frame = 0


Query: 1   MASIASS-AAVASVTRASPAQATMVAPFTGLKSSAGFPVTRKNNDITTLASNGGRVQCMK 60
           MASI SS AAVASV RASPAQA+MVAP+TGLKS+AGFPVTRKNNDITTLASNG RV+CMK
Sbjct: 1   MASIVSSAAAVASVNRASPAQASMVAPYTGLKSTAGFPVTRKNNDITTLASNGSRVRCMK 60

Query: 61  VWPPLGLKKFETLSYLPDLTQEQLLKEIDYLIRSKWIPCVEFELEKGFVYRENHRSPGYY 120
           VWPPLGLKKFETLSYLPDL+  QLLKEI YL+RS W+PC+EFELEKGFVYRENHRSPGYY
Sbjct: 61  VWPPLGLKKFETLSYLPDLSDAQLLKEIGYLLRSGWVPCIEFELEKGFVYRENHRSPGYY 120

Query: 121 DGRYWTMWKLPMYGCTDASQVLNEVLECKKEYPIAFVRIIGFDNVRQVQCISFIAAKPDN 180
           DGRYWTMWKLPM+GCTD +QV  E+ E KKEYP AF+R+IGFDNVRQVQCISFI  KP++
Sbjct: 121 DGRYWTMWKLPMFGCTDPAQVAAEIEEAKKEYPNAFIRVIGFDNVRQVQCISFIVYKPES 180

[Close]

BLAST of Sed0014916 vs. ExPASy TrEMBL
Match: A0A5D3CCQ3 (Ribulose bisphosphate carboxylase small subunit OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G001010 PE=3 SV=1)

HSP 1 Score: 312.4 bits (799), Expect = 1.3e-81
Identity = 145/179 (81.01%), Postives = 163/179 (91.06%), Query Frame = 0


Query: 2   ASIASSAAVASVTRASPAQATMVAPFTGLKSSAGFPVTRKNNDITTLASNGGRVQCMKVW 61
           +SI SSAAVASV  ASPAQA+MVAPFTGLKS+A FPVTRKNNDITTLASNGGRVQCMKVW
Sbjct: 3   SSILSSAAVASVNSASPAQASMVAPFTGLKSAAAFPVTRKNNDITTLASNGGRVQCMKVW 62

Query: 62  PPLGLKKFETLSYLPDLTQEQLLKEIDYLIRSKWIPCVEFELEKGFVYRENHRSPGYYDG 121
           PPLGLKKFETLSYLPD++ EQL KE+DYL+R  WIPC+EF++  GFVYRENHRSPGYYDG
Sbjct: 63  PPLGLKKFETLSYLPDMSNEQLGKEVDYLLRKGWIPCIEFDIHSGFVYRENHRSPGYYDG 122

Query: 122 RYWTMWKLPMYGCTDASQVLNEVLECKKEYPIAFVRIIGFDNVRQVQCISFIAAKPDNY 181
           RYWTMWKLPM+GCTD+SQV+NE+ E KKEYP A++R+IGFDNVRQVQCISFIA KP  +
Sbjct: 123 RYWTMWKLPMFGCTDSSQVVNEIEEAKKEYPDAYIRVIGFDNVRQVQCISFIAYKPPRF 181

[Close]

BLAST of Sed0014916 vs. TAIR 10
Match: AT5G38430.1 (Ribulose bisphosphate carboxylase (small chain) family protein )

HSP 1 Score: 288.1 bits (736), Expect = 4.9e-78
Identity = 138/180 (76.67%), Postives = 157/180 (87.22%), Query Frame = 0


Query: 2   ASIASSAAVASVTRASPAQATMVAPFTGLKSSAGFPVTRK-NNDITTLASNGGRVQCMKV 61
           +S+ SSAAV +    SPAQATMVAPFTGLKSSA FPVTRK NNDIT++ SNGGRV CMKV
Sbjct: 3   SSMLSSAAVVT----SPAQATMVAPFTGLKSSASFPVTRKANNDITSITSNGGRVSCMKV 62

Query: 62  WPPLGLKKFETLSYLPDLTQEQLLKEIDYLIRSKWIPCVEFELEKGFVYRENHRSPGYYD 121
           WPP+G KKFETLSYLPDLT  +L KE+DYL+R+KWIPCVEFELE GFVYRE+  +PGYYD
Sbjct: 63  WPPIGKKKFETLSYLPDLTDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYD 122

Query: 122 GRYWTMWKLPMYGCTDASQVLNEVLECKKEYPIAFVRIIGFDNVRQVQCISFIAAKPDNY 181
           GRYWTMWKLP++GCTD++QVL EV ECKKEYP AF+RIIGFDN RQVQCISFIA KP ++
Sbjct: 123 GRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKPPSF 178

[Close]

BLAST of Sed0014916 vs. TAIR 10
Match: AT1G67090.1 (ribulose bisphosphate carboxylase small chain 1A )

HSP 1 Score: 286.2 bits (731), Expect = 1.8e-77
Identity = 135/178 (75.84%), Postives = 153/178 (85.96%), Query Frame = 0


Query: 4   IASSAAVASVTRASPAQATMVAPFTGLKSSAGFPVTRK-NNDITTLASNGGRVQCMKVWP 63
           +ASS   ++   ASPAQATMVAPF GLKSSA FP TRK NNDIT++ SNGGRV CM+VWP
Sbjct: 1   MASSMLSSATMVASPAQATMVAPFNGLKSSAAFPATRKANNDITSITSNGGRVNCMQVWP 60

Query: 64  PLGLKKFETLSYLPDLTQEQLLKEIDYLIRSKWIPCVEFELEKGFVYRENHRSPGYYDGR 123
           P+G KKFETLSYLPDLT  +L KE+DYLIR+KWIPCVEFELE GFVYRE+  SPGYYDGR
Sbjct: 61  PIGKKKFETLSYLPDLTDSELAKEVDYLIRNKWIPCVEFELEHGFVYREHGNSPGYYDGR 120

Query: 124 YWTMWKLPMYGCTDASQVLNEVLECKKEYPIAFVRIIGFDNVRQVQCISFIAAKPDNY 181
           YWTMWKLP++GCTD++QVL EV ECKKEYP AF+RIIGFDN RQVQCISFIA KP ++
Sbjct: 121 YWTMWKLPLFGCTDSAQVLKEVEECKKEYPNAFIRIIGFDNTRQVQCISFIAYKPPSF 178

[Close]

BLAST of Sed0014916 vs. TAIR 10
Match: AT5G38410.1 (Ribulose bisphosphate carboxylase (small chain) family protein )

HSP 1 Score: 285.8 bits (730), Expect = 2.4e-77
Identity = 137/180 (76.11%), Postives = 157/180 (87.22%), Query Frame = 0


Query: 2   ASIASSAAVASVTRASPAQATMVAPFTGLKSSAGFPVTRK-NNDITTLASNGGRVQCMKV 61
           +S+ SSAAV +    SPAQATMVAPFTGLKSSA FPVTRK N DIT++ASNGGRV CMKV
Sbjct: 3   SSMLSSAAVVT----SPAQATMVAPFTGLKSSAAFPVTRKTNKDITSIASNGGRVSCMKV 62

Query: 62  WPPLGLKKFETLSYLPDLTQEQLLKEIDYLIRSKWIPCVEFELEKGFVYRENHRSPGYYD 121
           WPP+G KKFETLSYLPDL+  +L KE+DYL+R+KWIPCVEFELE GFVYRE+  +PGYYD
Sbjct: 63  WPPIGKKKFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYD 122

Query: 122 GRYWTMWKLPMYGCTDASQVLNEVLECKKEYPIAFVRIIGFDNVRQVQCISFIAAKPDNY 181
           GRYWTMWKLP++GCTD++QVL EV ECKKEYP AF+RIIGFDN RQVQCISFIA KP ++
Sbjct: 123 GRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKPPSF 178

[Close]

BLAST of Sed0014916 vs. TAIR 10
Match: AT5G38420.1 (Ribulose bisphosphate carboxylase (small chain) family protein )

HSP 1 Score: 285.0 bits (728), Expect = 4.1e-77
Identity = 134/178 (75.28%), Postives = 154/178 (86.52%), Query Frame = 0


Query: 4   IASSAAVASVTRASPAQATMVAPFTGLKSSAGFPVTRK-NNDITTLASNGGRVQCMKVWP 63
           +ASS   ++    SPAQATMVAPFTGLKSSA FPVTRK NNDIT++ SNGGRV CMKVWP
Sbjct: 1   MASSMFSSTAVVTSPAQATMVAPFTGLKSSASFPVTRKANNDITSITSNGGRVSCMKVWP 60

Query: 64  PLGLKKFETLSYLPDLTQEQLLKEIDYLIRSKWIPCVEFELEKGFVYRENHRSPGYYDGR 123
           P+G KKFETLSYLPDL+  +L KE+DYL+R+KWIPCVEFELE GFVYRE+  +PGYYDGR
Sbjct: 61  PIGKKKFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGR 120

Query: 124 YWTMWKLPMYGCTDASQVLNEVLECKKEYPIAFVRIIGFDNVRQVQCISFIAAKPDNY 181
           YWTMWKLP++GCTD++QVL EV ECKKEYP AF+RIIGFDN RQVQCISFIA KP ++
Sbjct: 121 YWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKPPSF 178

[Close]

BLAST of Sed0014916 vs. TAIR 10
Match: AT5G38410.3 (Ribulose bisphosphate carboxylase (small chain) family protein )

HSP 1 Score: 279.6 bits (714), Expect = 1.7e-75
Identity = 137/185 (74.05%), Postives = 157/185 (84.86%), Query Frame = 0


Query: 2   ASIASSAAVASVTRASPAQATMVAPFTGLKSSAGFPVTRK-NNDITTLASNGGRVQCMKV 61
           +S+ SSAAV +    SPAQATMVAPFTGLKSSA FPVTRK N DIT++ASNGGRV CMKV
Sbjct: 3   SSMLSSAAVVT----SPAQATMVAPFTGLKSSAAFPVTRKTNKDITSIASNGGRVSCMKV 62

Query: 62  WPPLGLKKFETLSYLPDLTQEQLLKEIDYLIRSKWIPCVEFELE-----KGFVYRENHRS 121
           WPP+G KKFETLSYLPDL+  +L KE+DYL+R+KWIPCVEFELE      GFVYRE+  +
Sbjct: 63  WPPIGKKKFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEVINTKHGFVYREHGNT 122

Query: 122 PGYYDGRYWTMWKLPMYGCTDASQVLNEVLECKKEYPIAFVRIIGFDNVRQVQCISFIAA 181
           PGYYDGRYWTMWKLP++GCTD++QVL EV ECKKEYP AF+RIIGFDN RQVQCISFIA 
Sbjct: 123 PGYYDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAY 182

The following BLAST results are available for this feature:

BLAST of Sed0014916 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022945823.1	1.8e-82	83.98	ribulose bisphosphate carboxylase small chain, chloroplastic-like [Cucurbita mos...	[more]
XP_022150468.1	2.3e-82	83.24	ribulose bisphosphate carboxylase small chain, chloroplastic-like [Momordica cha...	[more]
XP_023513414.1	2.3e-82	83.80	ribulose bisphosphate carboxylase small chain, chloroplastic-like [Cucurbita pep...	[more]
XP_023542956.1	4.0e-82	83.98	ribulose bisphosphate carboxylase small chain, chloroplastic-like [Cucurbita pep...	[more]
XP_022957356.1	5.2e-82	83.24	ribulose bisphosphate carboxylase small chain, chloroplastic-like [Cucurbita mos...	[more]

BLAST of Sed0014916 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P08474	6.0e-81	80.23	Ribulose bisphosphate carboxylase small subunit, chloroplastic OS=Cucumis sativu...	[more]
Q39746	5.1e-80	76.67	Ribulose bisphosphate carboxylase small subunit, chloroplastic 4 OS=Flaveria pri...	[more]
P08705	6.6e-80	76.67	Ribulose bisphosphate carboxylase small subunit, chloroplastic OS=Helianthus ann...	[more]
O65194	7.3e-79	77.09	Ribulose bisphosphate carboxylase small subunit, chloroplastic OS=Medicago sativ...	[more]
Q39744	9.6e-79	75.00	Ribulose bisphosphate carboxylase small subunit, chloroplastic 2 OS=Flaveria pri...	[more]

BLAST of Sed0014916 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G227	8.7e-83	83.98	Ribulose bisphosphate carboxylase small subunit OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1D9J4	1.1e-82	83.24	Ribulose bisphosphate carboxylase small subunit OS=Momordica charantia OX=3673 G...	[more]
A0A6J1GZ01	2.5e-82	83.24	Ribulose bisphosphate carboxylase small subunit OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1HZN6	4.3e-82	82.87	Ribulose bisphosphate carboxylase small subunit OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A5D3CCQ3	1.3e-81	81.01	Ribulose bisphosphate carboxylase small subunit OS=Cucumis melo var. makuwa OX=1...	[more]

BLAST of Sed0014916 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G38430.1	4.9e-78	76.67	Ribulose bisphosphate carboxylase (small chain) family protein	[more]
AT1G67090.1	1.8e-77	75.84	ribulose bisphosphate carboxylase small chain 1A	[more]
AT5G38410.1	2.4e-77	76.11	Ribulose bisphosphate carboxylase (small chain) family protein	[more]
AT5G38420.1	4.1e-77	75.28	Ribulose bisphosphate carboxylase (small chain) family protein	[more]
AT5G38410.3	1.7e-75	74.05	Ribulose bisphosphate carboxylase (small chain) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR024681	Ribulose bisphosphate carboxylase, small subunit	PRINTS	PR00152	RUBISCOSMALL	coord: 67..93 score: 71.13 coord: 95..110 score: 66.8 coord: 20..37 score: 75.57 coord: 46..64 score: 73.4 coord: 117..146 score: 82.08 coord: 151..177 score: 82.95
IPR000894	Ribulose bisphosphate carboxylase small subunit, domain	SMART	SM00961	RuBisCO_small_2_a	coord: 68..177 e-value: 2.4E-34 score: 130.1
IPR000894	Ribulose bisphosphate carboxylase small subunit, domain	PFAM	PF00101	RuBisCO_small	coord: 69..177 e-value: 3.9E-38 score: 129.4
IPR000894	Ribulose bisphosphate carboxylase small subunit, domain	CDD	cd03527	RuBisCO_small	coord: 67..177 e-value: 2.95883E-57 score: 173.212
IPR024680	Ribulose-1,5-bisphosphate carboxylase small subunit, N-terminal	PFAM	PF12338	RbcS	coord: 3..43 e-value: 7.9E-22 score: 77.2
IPR036385	Ribulose bisphosphate carboxylase, small subunit superfamily	GENE3D	3.30.190.10	Ribulose bisphosphate carboxylase, small subunit	coord: 58..181 e-value: 7.6E-60 score: 202.4
IPR036385	Ribulose bisphosphate carboxylase, small subunit superfamily	SUPERFAMILY	55239	RuBisCO, small subunit	coord: 58..179
None	No IPR available	PANTHER	PTHR31262	RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1, CHLOROPLASTIC	coord: 1..179
None	No IPR available	PANTHER	PTHR31262:SF10	RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN A, CHLOROPLASTIC	coord: 1..179

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0014916.1	Sed0014916.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015977	carbon fixation
biological_process	GO:0009853	photorespiration
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009506	plasmodesma
cellular_component	GO:0009536	plastid
molecular_function	GO:0016829	lyase activity