Sed0014870 (gene) Chayote v1

Overview


Name	Sed0014870
Type	gene
Organism	Sechium edule (Chayote v1)
Description	RPW8 domain-containing protein
Location	LG14: 15671806 .. 15672446 (+)
RNA-Seq Expression	Sed0014870
Synteny	Sed0014870

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTGCTTCTTCATTATATCCAATTCGCACTGACACGGAGAGAAGAAGAAGAAAAGGGGTTTTGTGGCGATGGCGGGGGAGGTAGTTATCGGTGCTGGGTTGGGTGCTGTAACAGAAGTGCTGCTGGAACTGGTGATATCCGTGATCGAATCGACTCGTCATTTCAGATCCGATCTCGAGAAAATCCGATCCAATTTACACAACTTAAGCAAGGTGATGAACAACCTGGCAGAGGTAGGCAACTTCTTGGACTACCATGGAAACACAAACAGCTTGAGGGAGCTCATAAGGCAAGGGGATATGCTGATTCAAAAGTGCGATGCTCTAAAAAACAGCAGATTCCACTTGAAGGTCCCGATTTACACGAGACGGCTTCGCAATTTCGATGTTCAGCTCCAGAGAGCCTCTCACCAATTGGTTTTGCAATTGATTGTTGAGCTATGGATGGAACAAGCTAGGAGGAGGAGTTGTAGTTTCCGTTGTTTTTTGCGTTCCGTTCGGGACAGAATCAAAACTAAACTTGCCACTAGAATTATGGGAGTTGACCGTTGTTATAGAGACCGGATTTCTACCAATCATGCCTCTGCGCAACCCAGCCTGCCTTTCATGTTTTTCGATGACCACCAACTCAACGGTACGTAA

mRNA sequence

GTTGCTTCTTCATTATATCCAATTCGCACTGACACGGAGAGAAGAAGAAGAAAAGGGGTTTTGTGGCGATGGCGGGGGAGGTAGTTATCGGTGCTGGGTTGGGTGCTGTAACAGAAGTGCTGCTGGAACTGGTGATATCCGTGATCGAATCGACTCGTCATTTCAGATCCGATCTCGAGAAAATCCGATCCAATTTACACAACTTAAGCAAGGTGATGAACAACCTGGCAGAGGTAGGCAACTTCTTGGACTACCATGGAAACACAAACAGCTTGAGGGAGCTCATAAGGCAAGGGGATATGCTGATTCAAAAGTGCGATGCTCTAAAAAACAGCAGATTCCACTTGAAGGTCCCGATTTACACGAGACGGCTTCGCAATTTCGATGTTCAGCTCCAGAGAGCCTCTCACCAATTGGTTTTGCAATTGATTGTTGAGCTATGGATGGAACAAGCTAGGAGGAGGAGTTGTAGTTTCCGTTGTTTTTTGCGTTCCGTTCGGGACAGAATCAAAACTAAACTTGCCACTAGAATTATGGGAGTTGACCGTTGTTATAGAGACCGGATTTCTACCAATCATGCCTCTGCGCAACCCAGCCTGCCTTTCATGTTTTTCGATGACCACCAACTCAACGGTACGTAA

Coding sequence (CDS)

ATGGCGGGGGAGGTAGTTATCGGTGCTGGGTTGGGTGCTGTAACAGAAGTGCTGCTGGAACTGGTGATATCCGTGATCGAATCGACTCGTCATTTCAGATCCGATCTCGAGAAAATCCGATCCAATTTACACAACTTAAGCAAGGTGATGAACAACCTGGCAGAGGTAGGCAACTTCTTGGACTACCATGGAAACACAAACAGCTTGAGGGAGCTCATAAGGCAAGGGGATATGCTGATTCAAAAGTGCGATGCTCTAAAAAACAGCAGATTCCACTTGAAGGTCCCGATTTACACGAGACGGCTTCGCAATTTCGATGTTCAGCTCCAGAGAGCCTCTCACCAATTGGTTTTGCAATTGATTGTTGAGCTATGGATGGAACAAGCTAGGAGGAGGAGTTGTAGTTTCCGTTGTTTTTTGCGTTCCGTTCGGGACAGAATCAAAACTAAACTTGCCACTAGAATTATGGGAGTTGACCGTTGTTATAGAGACCGGATTTCTACCAATCATGCCTCTGCGCAACCCAGCCTGCCTTTCATGTTTTTCGATGACCACCAACTCAACGGTACGTAA

Protein sequence

MAGEVVIGAGLGAVTEVLLELVISVIESTRHFRSDLEKIRSNLHNLSKVMNNLAEVGNFLDYHGNTNSLRELIRQGDMLIQKCDALKNSRFHLKVPIYTRRLRNFDVQLQRASHQLVLQLIVELWMEQARRRSCSFRCFLRSVRDRIKTKLATRIMGVDRCYRDRISTNHASAQPSLPFMFFDDHQLNGT

Homology

[Close]

BLAST of Sed0014870 vs. NCBI nr
Match: XP_008440239.1 (PREDICTED: uncharacterized protein LOC103484755 [Cucumis melo])

HSP 1 Score: 87.4 bits (215), Expect = 1.4e-13
Identity = 64/192 (33.33%), Postives = 108/192 (56.25%), Query Frame = 0


Query: 4   EVVIGAGLGAVTEVLLELVISVIESTRHFRSDLEKIRSNLHNLSKVMNNLAEVGN--FLD 63
           E+++GA LGA+   LL+ V++++E T HF+ +LE ++S +  L  +M+ + E+G    L 
Sbjct: 5   ELLVGAALGALLGELLKRVLNLMEKTVHFKPELEGLKSQVEFLMPLMDQVDELGEDFKLR 64

Query: 64  YHGNTNSLRELIRQGDMLIQKCD--ALKN--SRFHLKVPIYTRRLRNFDVQLQRASHQLV 123
           Y   T  L+ LI +G  LI++C+  A+++  SR+  K+P YT++LR  D +L+RA   L 
Sbjct: 65  YSDQTLKLKILINKGKQLIEECNYVAIQSTLSRYS-KIPRYTKKLRRLDAELKRAESNLR 124

Query: 124 LQLIVELWMEQARRRSCSFRCFLRSVRDRIKTKLATRIMGVDRCYRDRISTNHASAQPSL 183
           L+L V+    QA   + +       +RDR K    T I+  D  +R     N+   +  L
Sbjct: 125 LELCVQQMKLQALENNYNNGGRRGRIRDRAKL-FVTNIL--DNLFRGESGINNNEYKIKL 184

Query: 184 PFMFFDDHQLNG 190
           P +F+ D +L G
Sbjct: 185 PLLFYHDRRLKG 192

[Close]

BLAST of Sed0014870 vs. NCBI nr
Match: XP_022133046.1 (uncharacterized protein LOC111005737 isoform X2 [Momordica charantia])

HSP 1 Score: 79.0 bits (193), Expect = 5.1e-11
Identity = 52/136 (38.24%), Postives = 77/136 (56.62%), Query Frame = 0


Query: 4   EVVIGAGLGAVTEVLLELVISVIESTRHFRSDLEKIRSNLHNLSKVMNNLAEVGNFLDYH 63
           E+V GA LGAV   +L+  I ++E   +F+  +E IR  L  L KVM  L  + +FLD  
Sbjct: 3   EIVGGAALGAVAGEMLKGAIGLVEGAIYFKRVVEDIRFRLRVLGKVMEQLDGISDFLDDP 62

Query: 64  GNTNSLRELIRQGDMLIQKCDALKNSRF---HLKVPIYTRRLRNFDVQLQRASHQLVLQL 123
            NT  L +L+ QG  LI KC+ +K +     + K P YT +LR+ D +L+ A+  L L+L
Sbjct: 63  KNTKYLSKLLGQGKQLIIKCEGVKGNTILIKYFKAPFYTTKLRHLDARLKTATELLDLRL 122

Query: 124 IVELWMEQA-RRRSCS 136
             +  M+   RR SC+
Sbjct: 123 REQQAMDNTHRRHSCA 138

[Close]

BLAST of Sed0014870 vs. NCBI nr
Match: XP_022133049.1 (uncharacterized protein LOC111005737 isoform X4 [Momordica charantia])

HSP 1 Score: 79.0 bits (193), Expect = 5.1e-11
Identity = 52/136 (38.24%), Postives = 77/136 (56.62%), Query Frame = 0


Query: 4   EVVIGAGLGAVTEVLLELVISVIESTRHFRSDLEKIRSNLHNLSKVMNNLAEVGNFLDYH 63
           E+V GA LGAV   +L+  I ++E   +F+  +E IR  L  L KVM  L  + +FLD  
Sbjct: 3   EIVGGAALGAVAGEMLKGAIGLVEGAIYFKRVVEDIRFRLRVLGKVMEQLDGISDFLDDP 62

Query: 64  GNTNSLRELIRQGDMLIQKCDALKNSRF---HLKVPIYTRRLRNFDVQLQRASHQLVLQL 123
            NT  L +L+ QG  LI KC+ +K +     + K P YT +LR+ D +L+ A+  L L+L
Sbjct: 63  KNTKYLSKLLGQGKQLIIKCEGVKGNTILIKYFKAPFYTTKLRHLDARLKTATELLDLRL 122

Query: 124 IVELWMEQA-RRRSCS 136
             +  M+   RR SC+
Sbjct: 123 REQQAMDNTHRRHSCA 138

[Close]

BLAST of Sed0014870 vs. NCBI nr
Match: XP_022133047.1 (uncharacterized protein LOC111005737 isoform X3 [Momordica charantia])

HSP 1 Score: 79.0 bits (193), Expect = 5.1e-11
Identity = 52/136 (38.24%), Postives = 77/136 (56.62%), Query Frame = 0


Query: 4   EVVIGAGLGAVTEVLLELVISVIESTRHFRSDLEKIRSNLHNLSKVMNNLAEVGNFLDYH 63
           E+V GA LGAV   +L+  I ++E   +F+  +E IR  L  L KVM  L  + +FLD  
Sbjct: 3   EIVGGAALGAVAGEMLKGAIGLVEGAIYFKRVVEDIRFRLRVLGKVMEQLDGISDFLDDP 62

Query: 64  GNTNSLRELIRQGDMLIQKCDALKNSRF---HLKVPIYTRRLRNFDVQLQRASHQLVLQL 123
            NT  L +L+ QG  LI KC+ +K +     + K P YT +LR+ D +L+ A+  L L+L
Sbjct: 63  KNTKYLSKLLGQGKQLIIKCEGVKGNTILIKYFKAPFYTTKLRHLDARLKTATELLDLRL 122

Query: 124 IVELWMEQA-RRRSCS 136
             +  M+   RR SC+
Sbjct: 123 REQQAMDNTHRRHSCA 138

[Close]

BLAST of Sed0014870 vs. NCBI nr
Match: XP_022133045.1 (uncharacterized protein LOC111005737 isoform X1 [Momordica charantia])

HSP 1 Score: 79.0 bits (193), Expect = 5.1e-11
Identity = 52/136 (38.24%), Postives = 77/136 (56.62%), Query Frame = 0


Query: 4   EVVIGAGLGAVTEVLLELVISVIESTRHFRSDLEKIRSNLHNLSKVMNNLAEVGNFLDYH 63
           E+V GA LGAV   +L+  I ++E   +F+  +E IR  L  L KVM  L  + +FLD  
Sbjct: 3   EIVGGAALGAVAGEMLKGAIGLVEGAIYFKRVVEDIRFRLRVLGKVMEQLDGISDFLDDP 62

Query: 64  GNTNSLRELIRQGDMLIQKCDALKNSRF---HLKVPIYTRRLRNFDVQLQRASHQLVLQL 123
            NT  L +L+ QG  LI KC+ +K +     + K P YT +LR+ D +L+ A+  L L+L
Sbjct: 63  KNTKYLSKLLGQGKQLIIKCEGVKGNTILIKYFKAPFYTTKLRHLDARLKTATELLDLRL 122

Query: 124 IVELWMEQA-RRRSCS 136
             +  M+   RR SC+
Sbjct: 123 REQQAMDNTHRRHSCA 138

[Close]

BLAST of Sed0014870 vs. ExPASy TrEMBL
Match: A0A1S3B0M1 (uncharacterized protein LOC103484755 OS=Cucumis melo OX=3656 GN=LOC103484755 PE=3 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 6.9e-14
Identity = 64/192 (33.33%), Postives = 108/192 (56.25%), Query Frame = 0


Query: 4   EVVIGAGLGAVTEVLLELVISVIESTRHFRSDLEKIRSNLHNLSKVMNNLAEVGN--FLD 63
           E+++GA LGA+   LL+ V++++E T HF+ +LE ++S +  L  +M+ + E+G    L 
Sbjct: 5   ELLVGAALGALLGELLKRVLNLMEKTVHFKPELEGLKSQVEFLMPLMDQVDELGEDFKLR 64

Query: 64  YHGNTNSLRELIRQGDMLIQKCD--ALKN--SRFHLKVPIYTRRLRNFDVQLQRASHQLV 123
           Y   T  L+ LI +G  LI++C+  A+++  SR+  K+P YT++LR  D +L+RA   L 
Sbjct: 65  YSDQTLKLKILINKGKQLIEECNYVAIQSTLSRYS-KIPRYTKKLRRLDAELKRAESNLR 124

Query: 124 LQLIVELWMEQARRRSCSFRCFLRSVRDRIKTKLATRIMGVDRCYRDRISTNHASAQPSL 183
           L+L V+    QA   + +       +RDR K    T I+  D  +R     N+   +  L
Sbjct: 125 LELCVQQMKLQALENNYNNGGRRGRIRDRAKL-FVTNIL--DNLFRGESGINNNEYKIKL 184

Query: 184 PFMFFDDHQLNG 190
           P +F+ D +L G
Sbjct: 185 PLLFYHDRRLKG 192

[Close]

BLAST of Sed0014870 vs. ExPASy TrEMBL
Match: A0A6J1BU73 (uncharacterized protein LOC111005737 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111005737 PE=3 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 2.4e-11
Identity = 52/136 (38.24%), Postives = 77/136 (56.62%), Query Frame = 0


Query: 4   EVVIGAGLGAVTEVLLELVISVIESTRHFRSDLEKIRSNLHNLSKVMNNLAEVGNFLDYH 63
           E+V GA LGAV   +L+  I ++E   +F+  +E IR  L  L KVM  L  + +FLD  
Sbjct: 3   EIVGGAALGAVAGEMLKGAIGLVEGAIYFKRVVEDIRFRLRVLGKVMEQLDGISDFLDDP 62

Query: 64  GNTNSLRELIRQGDMLIQKCDALKNSRF---HLKVPIYTRRLRNFDVQLQRASHQLVLQL 123
            NT  L +L+ QG  LI KC+ +K +     + K P YT +LR+ D +L+ A+  L L+L
Sbjct: 63  KNTKYLSKLLGQGKQLIIKCEGVKGNTILIKYFKAPFYTTKLRHLDARLKTATELLDLRL 122

Query: 124 IVELWMEQA-RRRSCS 136
             +  M+   RR SC+
Sbjct: 123 REQQAMDNTHRRHSCA 138

[Close]

BLAST of Sed0014870 vs. ExPASy TrEMBL
Match: A0A6J1BTX8 (uncharacterized protein LOC111005737 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111005737 PE=3 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 2.4e-11
Identity = 52/136 (38.24%), Postives = 77/136 (56.62%), Query Frame = 0


Query: 4   EVVIGAGLGAVTEVLLELVISVIESTRHFRSDLEKIRSNLHNLSKVMNNLAEVGNFLDYH 63
           E+V GA LGAV   +L+  I ++E   +F+  +E IR  L  L KVM  L  + +FLD  
Sbjct: 3   EIVGGAALGAVAGEMLKGAIGLVEGAIYFKRVVEDIRFRLRVLGKVMEQLDGISDFLDDP 62

Query: 64  GNTNSLRELIRQGDMLIQKCDALKNSRF---HLKVPIYTRRLRNFDVQLQRASHQLVLQL 123
            NT  L +L+ QG  LI KC+ +K +     + K P YT +LR+ D +L+ A+  L L+L
Sbjct: 63  KNTKYLSKLLGQGKQLIIKCEGVKGNTILIKYFKAPFYTTKLRHLDARLKTATELLDLRL 122

Query: 124 IVELWMEQA-RRRSCS 136
             +  M+   RR SC+
Sbjct: 123 REQQAMDNTHRRHSCA 138

[Close]

BLAST of Sed0014870 vs. ExPASy TrEMBL
Match: A0A6J1BVI7 (uncharacterized protein LOC111005737 isoform X3 OS=Momordica charantia OX=3673 GN=LOC111005737 PE=3 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 2.4e-11
Identity = 52/136 (38.24%), Postives = 77/136 (56.62%), Query Frame = 0


Query: 4   EVVIGAGLGAVTEVLLELVISVIESTRHFRSDLEKIRSNLHNLSKVMNNLAEVGNFLDYH 63
           E+V GA LGAV   +L+  I ++E   +F+  +E IR  L  L KVM  L  + +FLD  
Sbjct: 3   EIVGGAALGAVAGEMLKGAIGLVEGAIYFKRVVEDIRFRLRVLGKVMEQLDGISDFLDDP 62

Query: 64  GNTNSLRELIRQGDMLIQKCDALKNSRF---HLKVPIYTRRLRNFDVQLQRASHQLVLQL 123
            NT  L +L+ QG  LI KC+ +K +     + K P YT +LR+ D +L+ A+  L L+L
Sbjct: 63  KNTKYLSKLLGQGKQLIIKCEGVKGNTILIKYFKAPFYTTKLRHLDARLKTATELLDLRL 122

Query: 124 IVELWMEQA-RRRSCS 136
             +  M+   RR SC+
Sbjct: 123 REQQAMDNTHRRHSCA 138

[Close]

BLAST of Sed0014870 vs. ExPASy TrEMBL
Match: A0A6J1BUU8 (uncharacterized protein LOC111005737 isoform X4 OS=Momordica charantia OX=3673 GN=LOC111005737 PE=3 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 2.4e-11
Identity = 52/136 (38.24%), Postives = 77/136 (56.62%), Query Frame = 0


Query: 4   EVVIGAGLGAVTEVLLELVISVIESTRHFRSDLEKIRSNLHNLSKVMNNLAEVGNFLDYH 63
           E+V GA LGAV   +L+  I ++E   +F+  +E IR  L  L KVM  L  + +FLD  
Sbjct: 3   EIVGGAALGAVAGEMLKGAIGLVEGAIYFKRVVEDIRFRLRVLGKVMEQLDGISDFLDDP 62

Query: 64  GNTNSLRELIRQGDMLIQKCDALKNSRF---HLKVPIYTRRLRNFDVQLQRASHQLVLQL 123
            NT  L +L+ QG  LI KC+ +K +     + K P YT +LR+ D +L+ A+  L L+L
Sbjct: 63  KNTKYLSKLLGQGKQLIIKCEGVKGNTILIKYFKAPFYTTKLRHLDARLKTATELLDLRL 122

Query: 124 IVELWMEQA-RRRSCS 136
             +  M+   RR SC+
Sbjct: 123 REQQAMDNTHRRHSCA 138

The following BLAST results are available for this feature:

BLAST of Sed0014870 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008440239.1	1.4e-13	33.33	PREDICTED: uncharacterized protein LOC103484755 [Cucumis melo]	[more]
XP_022133046.1	5.1e-11	38.24	uncharacterized protein LOC111005737 isoform X2 [Momordica charantia]	[more]
XP_022133049.1	5.1e-11	38.24	uncharacterized protein LOC111005737 isoform X4 [Momordica charantia]	[more]
XP_022133047.1	5.1e-11	38.24	uncharacterized protein LOC111005737 isoform X3 [Momordica charantia]	[more]
XP_022133045.1	5.1e-11	38.24	uncharacterized protein LOC111005737 isoform X1 [Momordica charantia]	[more]

BLAST of Sed0014870 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0014870 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3B0M1	6.9e-14	33.33	uncharacterized protein LOC103484755 OS=Cucumis melo OX=3656 GN=LOC103484755 PE=...	[more]
A0A6J1BU73	2.4e-11	38.24	uncharacterized protein LOC111005737 isoform X1 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1BTX8	2.4e-11	38.24	uncharacterized protein LOC111005737 isoform X2 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1BVI7	2.4e-11	38.24	uncharacterized protein LOC111005737 isoform X3 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1BUU8	2.4e-11	38.24	uncharacterized protein LOC111005737 isoform X4 OS=Momordica charantia OX=3673 G...	[more]

BLAST of Sed0014870 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 36..56
IPR008808	Powdery mildew resistance protein, RPW8 domain	PFAM	PF05659	RPW8	coord: 4..111 e-value: 2.9E-13 score: 49.6

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0014870.1	Sed0014870.1	mRNA