Sed0014856 (gene) Chayote v1

Overview
NameSed0014856
Typegene
OrganismSechium edule (Chayote v1)
DescriptionUnknown protein
LocationLG06: 30911943 .. 30914045 (+)
RNA-Seq ExpressionSed0014856
SyntenySed0014856
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGTTGGCGAATTCAGATCCAATCGAGTTCGATTTCGAAATCCTACAAACGAAGACGAACGTACCTTTCTCTTGGGAGGCCAAGCCGGGCGTTCCGAAGCTGAAATAGCGATCAAGCCCTAGCGTGTGAGCTTGTTGGAAAGATCGGTGGGAGAGTGCTAGGGTTCCCGGCGACTAAAGCACGGCGATTCCCTACACTCCGCCGCGATGCAGGGTGGAGAGTGCGAGGATCGGTAAGGATTACTTGTGGCTTGAAGCATATTCCGATGAGTTTGCATCGTCTCTAGGGTTTGGGTGCGTCGTTCTCCACCGCCGGCTCCGCCATGTTCTTCGTCTCTGTTGATGTTGGTAAGAAGAATTGCTCACTTCTTCGTTTGAGCTTCGAATCGTCGCAGAGAAGAGAGAGGAAAAAGAATCGACAAAAGAGGCGAGAAATTTTTTAAAGGAGGCGCTTTTGGGGTTTCATTTGTCATTTACAAGATTGGTTCGGTTCGGTTTTTATATTAGTTTTTTATATACAAAACAAACCGACCGAAAATATTCGGTTTTCTGCCATTTTCCAGTGTGTTTCTTAAAAACCGAACCAATCGGTTCACTTGGTTATTGGATTTTTTTCACCCCTACATACTACAACCTCTTAAAACCCTTGAAATTGATTCCTCTCACTTGATTATCCGAACGGTCTTCACACAATCAATTACCAAACGCAAAGGCAAGTCAATTTATACAACAAGTCATACGTAATTACCCATTTTTATGTGAAATTCATCATATATCAAATCATTTAAATTCAAATCAAAAGCATTATTCAAAAAACCTAACTAAAACAAGCCAATATCGAAGAGAAAGAAAAATAGATTGCAAAAAAATGAAGAGAACGACTCACTTGGACAAAATAAAAGAAAAGATTAAAAAAAAAAAAGAACAACAATAGAAATCAAACAAACAATATCAAATAGCAAGGGGGAGCAAGAGATGAGCGTAGAAGAGGCAACCATAATCAATTTAAGAGAGTAGTAGAATCAATAGAAGGGTATGATAATTTAATATGTGAACTTGATAAATCAGTTGGCAATGGAGTTAGAATGGTGGAAAATGGAGATAAATTTGGATCATCTTATGCTTAATGAACATTAGTCTTGCTCGCATTGAATCTCTCCCCAATTTCTGTAACCTTTTCACCATTGCCTATTGCGGGCGGACCTGGTTCGCCGTCAAACATGTGCATCTAAGCAGCACGTGCAACAGTACATCAGGCTGGAGATTCAATTCATGGAATTTATTAGTGATTTAAGAACCTCGAGATTGCACAGCCAACTTTTAGGTCGAAGAGGAAAAATGAAAGACTAAATGAAAAATTAGGGGGTTAGTTGTAAAAATAGGTCTTTTTCAAAAACTTACTGTAAAATTGATCTTTTTTCAAACATGTTATGGATATTATTTTTTGTATCATGTGGCTATGATTATGATAAAGTCACCACTACTTTGAAATTTTCAAACCATACTTAACACAATAGAGAAATGGATGGAACTTCTTTTATTAATTTTTTTCAATTTTATATGCTTTTTAATTACTATCATTAGTTTAAAAAAAATTAAATCAATGGGATATATTACCAATTTCTTAATTGTTAAACAATTCTTCAATTAATCATTATTGTCTAATTGTTTTTTTTTAACATATTATCCTAATCATCCTATTTTTTAAATTTATAATTATTTAATTAAAAAAATATTTTTCATCCTGATCATATTTATTTTTTCATCCTAAAGCAAAATGTTATTAATTATTTATATATTTTTTTAACCTAAATCATTTATACTAATTATGGATGAATGGAAACTTGAATGAAAATGGAAAAACATTTGAATAGATACAGCGTGAAAATTGAAAAATGCAAATAATTGTATCAATCTTCATTTGGTGAGTCATCTCCATTAGGATTAATGAACTGATAGATGGTTGTCACTAATTCCAAGCATCTTCTATTAAATGGAGTAAGGTAAGGAATATTGACCTGCAATTTTTTTTTTAATTAAACTAGTTTAAGTATGTATTTAGATGATGTTAATAATAATAATAAATATCACTAGAGCATGA

mRNA sequence

ATGGCGTTGGCGAATTCAGATCCAATCGAGTTCGATTTCGAAATCCTACAAACGAAGACGAACGTACCTTTCTCTTGGGAGGCCAAGCCGGGCGTTCCGAAGCTGAAATACACGGCGATTCCCTACACTCCGCCGCGATGCAGGGTGGAGAGTGCGAGGATCGGTAAGGATTACTTGTGGCTTGAAGCATATTCCGATGAGTTTGCATCGTCTCTAGGGTTTGGGTGCGTCGTTCTCCACCGCCGGCTCCGCCATGTTCTTCCATGA

Coding sequence (CDS)

ATGGCGTTGGCGAATTCAGATCCAATCGAGTTCGATTTCGAAATCCTACAAACGAAGACGAACGTACCTTTCTCTTGGGAGGCCAAGCCGGGCGTTCCGAAGCTGAAATACACGGCGATTCCCTACACTCCGCCGCGATGCAGGGTGGAGAGTGCGAGGATCGGTAAGGATTACTTGTGGCTTGAAGCATATTCCGATGAGTTTGCATCGTCTCTAGGGTTTGGGTGCGTCGTTCTCCACCGCCGGCTCCGCCATGTTCTTCCATGA

Protein sequence

MALANSDPIEFDFEILQTKTNVPFSWEAKPGVPKLKYTAIPYTPPRCRVESARIGKDYLWLEAYSDEFASSLGFGCVVLHRRLRHVLP
Homology
[Close]
BLAST of Sed0014856 vs. NCBI nr
Match: XP_004141298.1 (uncharacterized protein LOC101203728 [Cucumis sativus] >KAE8649894.1 hypothetical protein Csa_012140 [Cucumis sativus])

HSP 1 Score: 103.6 bits (257), Expect = 8.9e-19
Identity = 56/109 (51.38%), Postives = 62/109 (56.88%), Query Frame = 0 

Query: 3   LANSDPIEFDFEILQTKTNVPFSWEAKPGVPK------------------LKYTAIP--- 62
           +A+S PIE DFE L TKTNVPFSWEAKPGVPK                  LK  + P   
Sbjct: 1   MASSRPIEIDFEFLPTKTNVPFSWEAKPGVPKPQSQPSPTASLFEIEATMLKLPSPPCRS 60

Query: 63  --------------YTPPRCRVESARIGKDYLWLEAYSDEFASSLGFGC 77
                         Y+PPRCR ESAR+ KD+LWLEAYSD  ASS GFGC
Sbjct: 61  ESARLSGDYSGLITYSPPRCRAESARMAKDFLWLEAYSDGSASSFGFGC 109

[Close]
BLAST of Sed0014856 vs. NCBI nr
Match: KAG6608406.1 (hypothetical protein SDJN03_01748, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 94.0 bits (232), Expect = 7.0e-16
Identity = 48/106 (45.28%), Postives = 63/106 (59.43%), Query Frame = 0 

Query: 4   ANSDPIEFDFEILQTKTNVPFSWEAKPGVPKLKYT------------------------- 63
           ++S P++FDFE+LQT+TNVPFSWEAKPGVPKL+ +                         
Sbjct: 6   SSSHPLDFDFELLQTRTNVPFSWEAKPGVPKLQSSSSPNVSTFERSALKLPSPPYRSESA 65

Query: 64  --------AIPYTPPRCRVESARIGKDYLWLEAYSDEFASSLGFGC 77
                   AIP + PR +  SAR+ K++LWL+AYSD+F SS GFGC
Sbjct: 66  RLPDDYGEAIPCSSPRAK--SARMAKEHLWLQAYSDDFGSSFGFGC 109

[Close]
BLAST of Sed0014856 vs. NCBI nr
Match: KAG7037747.1 (hypothetical protein SDJN02_01378, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 94.0 bits (232), Expect = 7.0e-16
Identity = 48/106 (45.28%), Postives = 63/106 (59.43%), Query Frame = 0 

Query: 4   ANSDPIEFDFEILQTKTNVPFSWEAKPGVPKLKYT------------------------- 63
           ++S P++FDFE+LQT+TNVPFSWEAKPGVPKL+ +                         
Sbjct: 6   SSSHPLDFDFELLQTRTNVPFSWEAKPGVPKLQSSSSPNVSTFEISALKLPSPPYRSESA 65

Query: 64  --------AIPYTPPRCRVESARIGKDYLWLEAYSDEFASSLGFGC 77
                   AIP + PR +  SAR+ K++LWL+AYSD+F SS GFGC
Sbjct: 66  RLPDDYGEAIPCSSPRAK--SARMAKEHLWLQAYSDDFGSSFGFGC 109

[Close]
BLAST of Sed0014856 vs. NCBI nr
Match: KAA0064469.1 (hypothetical protein E6C27_scaffold255G001840 [Cucumis melo var. makuwa] >TYK20119.1 hypothetical protein E5676_scaffold134G002440 [Cucumis melo var. makuwa])

HSP 1 Score: 80.9 bits (198), Expect = 6.2e-12
Identity = 44/89 (49.44%), Postives = 48/89 (53.93%), Query Frame = 0 

Query: 21 NVPFSWEAKPGVPK----------------LKYTAIP-----------------YTPPRC 77
          NVPFSWEAKPGVPK                LK  + P                 Y+PPRC
Sbjct: 2  NVPFSWEAKPGVPKPQSQPSPSASLFETSMLKLPSPPCRSESARLSGDYSGLITYSPPRC 61

[Close]
BLAST of Sed0014856 vs. ExPASy TrEMBL
Match: A0A0A0KZZ9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G644720 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 4.3e-19
Identity = 56/109 (51.38%), Postives = 62/109 (56.88%), Query Frame = 0 

Query: 3   LANSDPIEFDFEILQTKTNVPFSWEAKPGVPK------------------LKYTAIP--- 62
           +A+S PIE DFE L TKTNVPFSWEAKPGVPK                  LK  + P   
Sbjct: 1   MASSRPIEIDFEFLPTKTNVPFSWEAKPGVPKPQSQPSPTASLFEIEATMLKLPSPPCRS 60

Query: 63  --------------YTPPRCRVESARIGKDYLWLEAYSDEFASSLGFGC 77
                         Y+PPRCR ESAR+ KD+LWLEAYSD  ASS GFGC
Sbjct: 61  ESARLSGDYSGLITYSPPRCRAESARMAKDFLWLEAYSDGSASSFGFGC 109

[Close]
BLAST of Sed0014856 vs. ExPASy TrEMBL
Match: A0A5D3D9E3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G002440 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 3.0e-12
Identity = 44/89 (49.44%), Postives = 48/89 (53.93%), Query Frame = 0 

Query: 21 NVPFSWEAKPGVPK----------------LKYTAIP-----------------YTPPRC 77
          NVPFSWEAKPGVPK                LK  + P                 Y+PPRC
Sbjct: 2  NVPFSWEAKPGVPKPQSQPSPSASLFETSMLKLPSPPCRSESARLSGDYSGLITYSPPRC 61

The following BLAST results are available for this feature:
BLAST of Sed0014856 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004141298.18.9e-1951.38uncharacterized protein LOC101203728 [Cucumis sativus] >KAE8649894.1 hypothetica... [more]
KAG6608406.17.0e-1645.28hypothetical protein SDJN03_01748, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7037747.17.0e-1645.28hypothetical protein SDJN02_01378, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAA0064469.16.2e-1249.44hypothetical protein E6C27_scaffold255G001840 [Cucumis melo var. makuwa] >TYK201... [more]
BLAST of Sed0014856 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Sed0014856 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KZZ94.3e-1951.38Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G644720 PE=4 SV=1[more]
A0A5D3D9E33.0e-1249.44Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of Sed0014856 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0014856.1Sed0014856.1mRNA