Sed0014803 (gene) Chayote v1

Overview


Name	Sed0014803
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Unknown protein
Location	LG08: 35673752 .. 35674291 (-)
RNA-Seq Expression	Sed0014803
Synteny	Sed0014803

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAATCCCCGCCTCTGTTTCCATCGATTTTTCATCGGAATCTTGAAATCCCGATGATCTCTGATCGGAACGGCGCGCCGATTTCGAGTTCCGTGGAGTTTGAATCCGAGATTCGAAATGGAGAGAGGAAAGAGGAAGAGAGCGTCGCCGGTGGAGATCGTCGGCGGAGTTGTGGTTGAAGAAACGAAGAAGAGGAAGAAAACGAGAGAGGCGGCGGCGACGACGGCGGAGGAGCCGACGACGGAGGAGGTGGAGGAGTTTTATGCCATTTTGAGAAGGATGCATGCGGCGATGCGGTACTTGAAAGGGGCGGAGAAGAGGCTAATGGATGGGAAGCCGGCGGCGGAGACGACGGCGGTGGTTAGGGAAAAGAAAGAACTGGATTTAAATGAAGTGCCTGCAGATTCTGCTAATTAATTTTGGTTTAAGGTATTGAAATTAAGACAAGAAGCTTTCGTTTCGTTGTTTTGTTTGTTAATCTCACTGTAAATCTTATTTTAAGTATGTCAGTCACGAATTTATCAAGTTTTTTTTTTTTTTT

mRNA sequence

CAAATCCCCGCCTCTGTTTCCATCGATTTTTCATCGGAATCTTGAAATCCCGATGATCTCTGATCGGAACGGCGCGCCGATTTCGAGTTCCGTGGAGTTTGAATCCGAGATTCGAAATGGAGAGAGGAAAGAGGAAGAGAGCGTCGCCGGTGGAGATCGTCGGCGGAGTTGTGGTTGAAGAAACGAAGAAGAGGAAGAAAACGAGAGAGGCGGCGGCGACGACGGCGGAGGAGCCGACGACGGAGGAGGTGGAGGAGTTTTATGCCATTTTGAGAAGGATGCATGCGGCGATGCGGTACTTGAAAGGGGCGGAGAAGAGGCTAATGGATGGGAAGCCGGCGGCGGAGACGACGGCGGTGGTTAGGGAAAAGAAAGAACTGGATTTAAATGAAGTGCCTGCAGATTCTGCTAATTAATTTTGGTTTAAGGTATTGAAATTAAGACAAGAAGCTTTCGTTTCGTTGTTTTGTTTGTTAATCTCACTGTAAATCTTATTTTAAGTATGTCAGTCACGAATTTATCAAGTTTTTTTTTTTTTTT

Coding sequence (CDS)

ATGGAGAGAGGAAAGAGGAAGAGAGCGTCGCCGGTGGAGATCGTCGGCGGAGTTGTGGTTGAAGAAACGAAGAAGAGGAAGAAAACGAGAGAGGCGGCGGCGACGACGGCGGAGGAGCCGACGACGGAGGAGGTGGAGGAGTTTTATGCCATTTTGAGAAGGATGCATGCGGCGATGCGGTACTTGAAAGGGGCGGAGAAGAGGCTAATGGATGGGAAGCCGGCGGCGGAGACGACGGCGGTGGTTAGGGAAAAGAAAGAACTGGATTTAAATGAAGTGCCTGCAGATTCTGCTAATTAA

Protein sequence

MERGKRKRASPVEIVGGVVVEETKKRKKTREAAATTAEEPTTEEVEEFYAILRRMHAAMRYLKGAEKRLMDGKPAAETTAVVREKKELDLNEVPADSAN

Homology

[Close]

BLAST of Sed0014803 vs. NCBI nr
Match: KAG6584363.1 (hypothetical protein SDJN03_20295, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 85.1 bits (209), Expect = 3.7e-13
Identity = 63/112 (56.25%), Postives = 74/112 (66.07%), Query Frame = 0


Query: 1   MERGKRKRASPVEIVGGVVVEETKKRKKT----REAAA-----TTAEEPTTEEVEEFYAI 60
           MER KRK+ SP E       +ETK+ KKT    REAAA     T  EEPTTEEVEEFYAI
Sbjct: 1   MEREKRKKMSPGE-------KETKRSKKTRKEEREAAAAAGVETEMEEPTTEEVEEFYAI 60

Query: 61  LRRMHAAMRYLKGAEKRLMDGKPAAETTAV----VREKKELDLNEVPADSAN 100
           LRRM  A+RYLKG  KR+++ +  AET  V     +E +EL+LNEVPADS N
Sbjct: 61  LRRMDVALRYLKG--KRVVERRTTAETAVVGTGKGQEIQELNLNEVPADSTN 103

[Close]

BLAST of Sed0014803 vs. NCBI nr
Match: KGN64116.1 (hypothetical protein Csa_013670 [Cucumis sativus])

HSP 1 Score: 84.3 bits (207), Expect = 6.3e-13
Identity = 59/108 (54.63%), Postives = 69/108 (63.89%), Query Frame = 0


Query: 1   MERGKRKRASPVEIVGGVVVEETKKRKKTR---------EAAATTAEEPTTEEVEEFYAI 60
           MER KRK  S  E   G VVEE K+RKK +           AA   EEP+TEEVEEFYAI
Sbjct: 1   MEREKRKEMSEGE--KGGVVEEMKRRKKKKIKKEEEKKEAVAAAEVEEPSTEEVEEFYAI 60

Query: 61  LRRMHAAMRYLKGAEKRLMDGKPAAETTAVVREKKELDLNEVPADSAN 100
           LRRM  A+RYLKG  KR+ + +     TAV  E KEL+LNEVP+DS+N
Sbjct: 61  LRRMDEALRYLKG--KRVPERRTTMGETAVAVENKELNLNEVPSDSSN 104

[Close]

BLAST of Sed0014803 vs. NCBI nr
Match: XP_031122625.1 (protein NIM1-INTERACTING 2 [Ipomoea triloba])

HSP 1 Score: 55.1 bits (131), Expect = 4.1e-04
Identity = 44/115 (38.26%), Postives = 60/115 (52.17%), Query Frame = 0


Query: 1   MERGKRKRASPVEIVGGVVVEETKKRKKTREAAATTAEEPTTEEVEEFYAILRRMHAAMR 60
           ME G++KR S  +   GV     KKR K  EA    AEE   EEVEEF+AILRR+HAA++
Sbjct: 1   MEEGEKKRKSERDGDDGVSAAMKKKRGK-EEADQPAAEEVADEEVEEFFAILRRIHAAVK 60

Query: 61  YLK--------GAEKRLMDGKPAAETTAVVREKKE--------LDLNEVPADSAN 100
           Y          G+ ++++      E++ V+ EKK          DLN +P D  N
Sbjct: 61  YFAKGGDGGAGGSGRKMIQAIGREESSGVLDEKKREDDEESKGFDLNAIPNDDDN 114

[Close]

BLAST of Sed0014803 vs. ExPASy TrEMBL
Match: A0A0A0LVR0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042280 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 3.0e-13
Identity = 59/108 (54.63%), Postives = 69/108 (63.89%), Query Frame = 0


Query: 1   MERGKRKRASPVEIVGGVVVEETKKRKKTR---------EAAATTAEEPTTEEVEEFYAI 60
           MER KRK  S  E   G VVEE K+RKK +           AA   EEP+TEEVEEFYAI
Sbjct: 1   MEREKRKEMSEGE--KGGVVEEMKRRKKKKIKKEEEKKEAVAAAEVEEPSTEEVEEFYAI 60

Query: 61  LRRMHAAMRYLKGAEKRLMDGKPAAETTAVVREKKELDLNEVPADSAN 100
           LRRM  A+RYLKG  KR+ + +     TAV  E KEL+LNEVP+DS+N
Sbjct: 61  LRRMDEALRYLKG--KRVPERRTTMGETAVAVENKELNLNEVPSDSSN 104

The following BLAST results are available for this feature:

BLAST of Sed0014803 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6584363.1	3.7e-13	56.25	hypothetical protein SDJN03_20295, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KGN64116.1	6.3e-13	54.63	hypothetical protein Csa_013670 [Cucumis sativus]	[more]
XP_031122625.1	4.1e-04	38.26	protein NIM1-INTERACTING 2 [Ipomoea triloba]	[more]

BLAST of Sed0014803 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0014803 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LVR0	3.0e-13	54.63	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042280 PE=4 SV=1	[more]

BLAST of Sed0014803 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 80..99
None	No IPR available	PANTHER	PTHR35735:SF6	NIMIN2C PROTEIN	coord: 2..95
IPR034577	Protein NIM1-INTERACTING 2	PANTHER	PTHR35735	PROTEIN NIM1-INTERACTING 2	coord: 2..95

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0014803.1	Sed0014803.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010112	regulation of systemic acquired resistance