Sed0014788 (gene) Chayote v1

Overview


Name	Sed0014788
Type	gene
Organism	Sechium edule (Chayote v1)
Description	sigma factor binding protein 2, chloroplastic-like
Location	LG14: 311809 .. 313667 (-)
RNA-Seq Expression	Sed0014788
Synteny	Sed0014788

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACGGCGGCGGCGGCGGCCACCGGCGAAAGCCCACCAAGAAAACAAAACAACCCAACAAAAAAAGCAAACCCATCAAAGTTGTGTACATATCCAACCCCATGAAGGTTCAAACCAGTGCCTCTAAATTCATGGCTTTGGTCCAACAACTCACCGGCCAGGACGCCGACTTTCCCGACCCTTCTATGTTCCACTCCTCCGCCACCGTCTGCGGCTGCGCCGCCCCCCTCCTCCTCGACAACCCGGCTGCCGCCGCCGCCGACGATGACGCCAATAACGACAGCCCTTCTTCACTTGGTGCCGAGCTGCCGACGGAGGATGAGTTTCTCGATAGCTTTTATGATGACTTTGATGACCTGATTTTCCCTCCTCCGGTGATCGGAAACTTCTCCGGCTTACTTCCGGCCGCCGCGGTAACTTGTGAATCTTACGCAAGGTGATTTGGCTACCCTTGTTTGAAGAAATGTGTGGAAGATCTTTAATTTCTCTCTTCTTTTTTCAATTATCTCTCTCTTTTCATTTTAATTTTAATTACCTTCTATTTTCTCATAACCTTATTTATATGATATATCTTTGTATATGCATGTAAATTAAGGAGTTAAATCCTAACTTCTGCGAACTATCCAGGTCTACCAATTTATGATTTCTTGTGCTGATCAAGTCTTCGAGATAGTCATTAATTATTATCAAGAGATTGATAAAATAATATTTTCTATCGATTTTGGTTTTAGATTTGTCTTTATTGAACTTTCGGATCTTTGATTGTGATTTATTGTGACATTTTTTAGAGCTATATATATATATTAATTGTTTACTTGTATCCTTGTCTAACATTATGCTATAACAATTTGTTTATTTGTTTCTAAAAAATCAAACCTTTTGAGACCCATTTAAAAAAGAATGATAGCTAAGACCCTTTCCGATTAGTTTTTTGTCTTTGAAATTTAATTCTAACCAAAATTTATTTAAAATTCACATAATTTAGAATTTTAGCTAAATACAAATTGGAAAACCAAAACAAAAACAAAGTTACCTTTTCATAACCATTTTGTTTTTCGTTTGTTGTTTATAAAATTTAAGTCTACAACAACTACCTTATTATACTTATTTTTTAAATTTTTATTTAGATATCTACATTTTAATAAACAAAATCAAAATTTATATTAAAAAAAAAATTTAGCTTCTAAAAACTTGTTTATATTTTTAAAATTTGGTTATAATTCTCCTCCTACTTTCTTAGACTTAAATTTCATAAACAAAAAACAAAAAATAAAATAATTAAGGCCAAAATAATTATGAAACTAACACAATTCTTGTTTAGTTAAATGACAAACACAATTTTAAAATATGAATCACTAGGTATTTAATCATACATTGTATATTTCAGTTACTATTTTGTTTTCCATTATCAATGGTATGGATGGAGGGTTTTTTTTTTTTTTTTTGGTGAATTTTGGGGATAGAGATTCAAAATTCTAAATTTTTGTTGAAATTATATTATGAAGTTTCATCTGGTGATTCTTCATCTCGACCCACTGAGAGCTATGCTCAAATTGTTGGAAGGGGCAATTGATTTTGATTTTTTTAATTTATTATGACATTTGGTTTTTGTTTGCTGATGTCTTATCCTATATTCTTCTTTCTGTGGAAGATGAAAAAGGACGTGTGTGCAAACAAAGACAGAAAATGGACCCGAACAGAACCTTTTATTTTCTTAGGCTAATCTCAGCAACTTGGGGAAAGGGTTGAAGTGAAATAGAAAATGACTCATAATCTCAGAACCAAACAAAGCCAGAAAGACCCTTTAAGTCAATGTATAAAGTTTATACATTTCAATTATTAGATACAAGTAGTACAC

mRNA sequence

ATGGACGGCGGCGGCGGCGGCCACCGGCGAAAGCCCACCAAGAAAACAAAACAACCCAACAAAAAAAGCAAACCCATCAAAGTTGTGTACATATCCAACCCCATGAAGGTTCAAACCAGTGCCTCTAAATTCATGGCTTTGGTCCAACAACTCACCGGCCAGGACGCCGACTTTCCCGACCCTTCTATGTTCCACTCCTCCGCCACCGTCTGCGGCTGCGCCGCCCCCCTCCTCCTCGACAACCCGGCTGCCGCCGCCGCCGACGATGACGCCAATAACGACAGCCCTTCTTCACTTGGTGCCGAGCTGCCGACGGAGGATGAGTTTCTCGATAGCTTTTATGATGACTTTGATGACCTGATTTTCCCTCCTCCGGTGATCGGAAACTTCTCCGGCTTACTTCCGGCCGCCGCGGTAACTTGTGAATCTTACGCAAGATGAAAAAGGACGTGTGTGCAAACAAAGACAGAAAATGGACCCGAACAGAACCTTTTATTTTCTTAGGCTAATCTCAGCAACTTGGGGAAAGGGTTGAAGTGAAATAGAAAATGACTCATAATCTCAGAACCAAACAAAGCCAGAAAGACCCTTTAAGTCAATGTATAAAGTTTATACATTTCAATTATTAGATACAAGTAGTACAC

Coding sequence (CDS)

ATGGACGGCGGCGGCGGCGGCCACCGGCGAAAGCCCACCAAGAAAACAAAACAACCCAACAAAAAAAGCAAACCCATCAAAGTTGTGTACATATCCAACCCCATGAAGGTTCAAACCAGTGCCTCTAAATTCATGGCTTTGGTCCAACAACTCACCGGCCAGGACGCCGACTTTCCCGACCCTTCTATGTTCCACTCCTCCGCCACCGTCTGCGGCTGCGCCGCCCCCCTCCTCCTCGACAACCCGGCTGCCGCCGCCGCCGACGATGACGCCAATAACGACAGCCCTTCTTCACTTGGTGCCGAGCTGCCGACGGAGGATGAGTTTCTCGATAGCTTTTATGATGACTTTGATGACCTGATTTTCCCTCCTCCGGTGATCGGAAACTTCTCCGGCTTACTTCCGGCCGCCGCGGTAACTTGTGAATCTTACGCAAGATGA

Protein sequence

MDGGGGGHRRKPTKKTKQPNKKSKPIKVVYISNPMKVQTSASKFMALVQQLTGQDADFPDPSMFHSSATVCGCAAPLLLDNPAAAAADDDANNDSPSSLGAELPTEDEFLDSFYDDFDDLIFPPPVIGNFSGLLPAAAVTCESYAR

Homology

[Close]

BLAST of Sed0014788 vs. NCBI nr
Match: XP_022931925.1 (sigma factor binding protein 1, chloroplastic-like [Cucurbita moschata] >KAG6595416.1 Sigma factor binding protein 1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 186.0 bits (471), Expect = 2.3e-43
Identity = 109/164 (66.46%), Postives = 118/164 (71.95%), Query Frame = 0


Query: 1   MDGGGGG-------------HRRKPTKKTKQPNKKSKPIKVVYISNPMKVQTSASKFMAL 60
           MDGGGGG              RRKPTKKTKQPN K KPIKVVYISNPMKV+TSASKFMAL
Sbjct: 1   MDGGGGGGGNRNDHTSLGGVRRRKPTKKTKQPNNKKKPIKVVYISNPMKVKTSASKFMAL 60

Query: 61  VQQLTGQDADFPDPSMFHSSATVCGCAAPLLLDNPAAAAADDDA---NNDSPSSLGAELP 120
           VQ+LTGQDADFPDPS FHSS    G A P LL +  AA  D D+   NN+ P++LG ELP
Sbjct: 61  VQELTGQDADFPDPSKFHSSDEDAG-ATPDLLHSTTAAGQDYDSLMMNNNIPTTLGVELP 120

Query: 121 TEDEFLDSFYDDFDDLIFPPPVIGNFSGLLP---AAAVTCESYA 146
            ED  + SFYDDFDDLI PPP+IGNFSG LP   AAAV  ESYA
Sbjct: 121 AEDYLVGSFYDDFDDLILPPPLIGNFSGFLPAAEAAAVMYESYA 163

[Close]

BLAST of Sed0014788 vs. NCBI nr
Match: XP_023518833.1 (uncharacterized protein LOC111782231 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 184.9 bits (468), Expect = 5.0e-43
Identity = 108/165 (65.45%), Postives = 115/165 (69.70%), Query Frame = 0


Query: 1   MDGGGGG------------HRRKPTKKTKQPNKKSKPIKVVYISNPMKVQTSASKFMALV 60
           MDGGGGG             RRKPTKKT QPN K KPIKVVYISNPMKV+TSASKFMALV
Sbjct: 1   MDGGGGGGNRNDHTSLGGVRRRKPTKKTNQPNNKKKPIKVVYISNPMKVKTSASKFMALV 60

Query: 61  QQLTGQDADFPDPSMFHSSATVCGCAAPLLLDNPAAAAADDDA---NNDSPSSLGAELPT 120
           Q+LTGQDADFPDPS FHSS    G    LL    AAAA D D+   NN+ P++LG ELP 
Sbjct: 61  QELTGQDADFPDPSKFHSSDVDAGATPDLLHSTAAAAAQDYDSLTMNNNIPTTLGVELPA 120

Query: 121 EDEFLDSFYDDFDDLIFPPPVIGNFSGLLP-----AAAVTCESYA 146
           ED  L SFYDDFDDLI PPP+IGNFS  LP     AAAV  ESYA
Sbjct: 121 EDYLLGSFYDDFDDLILPPPLIGNFSEFLPAAEAAAAAVMYESYA 165

[Close]

BLAST of Sed0014788 vs. NCBI nr
Match: KAG7027424.1 (Sigma factor binding protein 1, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 184.5 bits (467), Expect = 6.6e-43
Identity = 109/168 (64.88%), Postives = 118/168 (70.24%), Query Frame = 0


Query: 1   MDGGGGG-------------HRRKPTKKTKQPNKKSKPIKVVYISNPMKVQTSASKFMAL 60
           MDGGGGG              RRKPTKKTKQPN K KPIKVVYISNPMKV+TSASKFMAL
Sbjct: 1   MDGGGGGGGNRNDHTSLGGVRRRKPTKKTKQPNNKKKPIKVVYISNPMKVKTSASKFMAL 60

Query: 61  VQQLTGQDADFPDPSMFHSSATVCGCAAPLLLDNPAAAAADDDA---NNDSPSSLGAELP 120
           VQ+LTGQDADFPDPS FHSS    G A P LL +  AA  D D+   NN+ P++LG ELP
Sbjct: 61  VQELTGQDADFPDPSKFHSSDEDAG-ATPDLLHSTTAAGQDYDSLMMNNNIPTTLGVELP 120

Query: 121 TEDEFLDSFYDDFDDLIFPPPVIGNFSGLLP-------AAAVTCESYA 146
            ED  + SFYDDFDDLI PPP+IGNFSG LP       AAAV  ESYA
Sbjct: 121 AEDYLVGSFYDDFDDLILPPPLIGNFSGFLPAAEAAAAAAAVMYESYA 167

[Close]

BLAST of Sed0014788 vs. NCBI nr
Match: XP_038882812.1 (sigma factor binding protein 2, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 181.4 bits (459), Expect = 5.6e-42
Identity = 103/146 (70.55%), Postives = 113/146 (77.40%), Query Frame = 0


Query: 8   HRRKPTKKTKQPNKKSKPIKVVYISNPMKVQTSASKFMALVQQLTGQDADFPDPSMFHSS 67
           +RRKPTKKTKQPNKK KPIKVVYISNPMKVQTSASKFMALVQ+LTG+DADFPDPS F  S
Sbjct: 18  NRRKPTKKTKQPNKK-KPIKVVYISNPMKVQTSASKFMALVQELTGRDADFPDPSKFSPS 77

Query: 68  ATVCGCAAPLLLDNPAAAAADDDAN------NDSPSSLGAELPTEDEFLDSFYDDFDDLI 127
           A   G A+  LL N A+   DD+        N++  SL  ELP +D+ L SFYDDFDDLI
Sbjct: 78  AVCGGAASSDLLHNTASGGGDDEHGASNLIMNNNNCSLAVELPVDDDILGSFYDDFDDLI 137

Query: 128 FPPPVIGNFSGLLP-AAAVTCESYAR 147
           FPPPVIGNFSGLLP AAAV  ESYAR
Sbjct: 138 FPPPVIGNFSGLLPAAAAVVYESYAR 162

[Close]

BLAST of Sed0014788 vs. NCBI nr
Match: XP_022966643.1 (uncharacterized protein LOC111466266 [Cucurbita maxima])

HSP 1 Score: 179.5 bits (454), Expect = 2.1e-41
Identity = 106/165 (64.24%), Postives = 116/165 (70.30%), Query Frame = 0


Query: 1   MDGGGGG------------HRRKPTKKTKQPNKKSKPIKVVYISNPMKVQTSASKFMALV 60
           MDGGGGG             RRKPTKKTKQPN K KPIKVVYISNPMKV+TSAS FMALV
Sbjct: 1   MDGGGGGGNLNDHTDLGGVRRRKPTKKTKQPNNKKKPIKVVYISNPMKVKTSASNFMALV 60

Query: 61  QQLTGQDADFPDPSMFHSSATVCGCAAPLLLDNPAAAAADDDA---NNDSPSSLGAELPT 120
           Q+LTGQDADFPDPS F SS  V G A P LL + AAA  +  +   NN+ P++LG ELP 
Sbjct: 61  QELTGQDADFPDPSKFDSSDEVAG-ATPGLLHSTAAAGQEYGSLMMNNNIPTTLGVELPA 120

Query: 121 EDEFLDSFYDDFDDLIFPPPVIGNFSGLLPAAAVTC-----ESYA 146
           ED  + SFYDDFDDLI PPP+IGNFSG LPAA  T      ESYA
Sbjct: 121 EDFLVGSFYDDFDDLILPPPLIGNFSGFLPAAEATAAAMMYESYA 164

[Close]

BLAST of Sed0014788 vs. ExPASy Swiss-Prot
Match: Q9LDH1 (Sigma factor binding protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SIB1 PE=1 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 4.6e-07
Identity = 42/101 (41.58%), Postives = 54/101 (53.47%), Query Frame = 0


Query: 10  RKPTKKTKQPNKKSKPIKVVYISNPMKVQTSASKFMALVQQLTGQDADFPDPSMFHSSAT 69
           RK  K+ K+    +KPIKV YISNPM+VQT ASKF  LVQ+LTGQDA    P   +S ++
Sbjct: 24  RKSPKQKKKTTSTNKPIKVRYISNPMRVQTCASKFRELVQELTGQDAVDLQPEPIYSPSS 83

Query: 70  VCGCAAPLLLDNPAAAAADDDANNDSPSSLGAELPTEDEFL 111
                +P   +N A      +   +  S     L  ED FL
Sbjct: 84  DDHNLSP-PAENLAPRVLHQEPFGERDSDCYEPLNAEDMFL 123

[Close]

BLAST of Sed0014788 vs. ExPASy Swiss-Prot
Match: O80669 (Sigma factor binding protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SIB2 PE=1 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 2.3e-06
Identity = 30/53 (56.60%), Postives = 36/53 (67.92%), Query Frame = 0


Query: 10 RKPTKKTKQPNKKSKPIKVVYISNPMKVQTSASKFMALVQQLTGQDADFPDPS 63
          R P K+ ++     KPIKV YISNPM+V+T  SKF  LVQ+LTGQDA    PS
Sbjct: 21 RIPPKQKRKSTTTHKPIKVRYISNPMRVETCPSKFRELVQELTGQDAADLPPS 73

[Close]

BLAST of Sed0014788 vs. ExPASy TrEMBL
Match: A0A6J1F0S9 (sigma factor binding protein 1, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111438200 PE=4 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 1.1e-43
Identity = 109/164 (66.46%), Postives = 118/164 (71.95%), Query Frame = 0


Query: 1   MDGGGGG-------------HRRKPTKKTKQPNKKSKPIKVVYISNPMKVQTSASKFMAL 60
           MDGGGGG              RRKPTKKTKQPN K KPIKVVYISNPMKV+TSASKFMAL
Sbjct: 1   MDGGGGGGGNRNDHTSLGGVRRRKPTKKTKQPNNKKKPIKVVYISNPMKVKTSASKFMAL 60

Query: 61  VQQLTGQDADFPDPSMFHSSATVCGCAAPLLLDNPAAAAADDDA---NNDSPSSLGAELP 120
           VQ+LTGQDADFPDPS FHSS    G A P LL +  AA  D D+   NN+ P++LG ELP
Sbjct: 61  VQELTGQDADFPDPSKFHSSDEDAG-ATPDLLHSTTAAGQDYDSLMMNNNIPTTLGVELP 120

Query: 121 TEDEFLDSFYDDFDDLIFPPPVIGNFSGLLP---AAAVTCESYA 146
            ED  + SFYDDFDDLI PPP+IGNFSG LP   AAAV  ESYA
Sbjct: 121 AEDYLVGSFYDDFDDLILPPPLIGNFSGFLPAAEAAAVMYESYA 163

[Close]

BLAST of Sed0014788 vs. ExPASy TrEMBL
Match: A0A6J1HSP6 (uncharacterized protein LOC111466266 OS=Cucurbita maxima OX=3661 GN=LOC111466266 PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 1.0e-41
Identity = 106/165 (64.24%), Postives = 116/165 (70.30%), Query Frame = 0


Query: 1   MDGGGGG------------HRRKPTKKTKQPNKKSKPIKVVYISNPMKVQTSASKFMALV 60
           MDGGGGG             RRKPTKKTKQPN K KPIKVVYISNPMKV+TSAS FMALV
Sbjct: 1   MDGGGGGGNLNDHTDLGGVRRRKPTKKTKQPNNKKKPIKVVYISNPMKVKTSASNFMALV 60

Query: 61  QQLTGQDADFPDPSMFHSSATVCGCAAPLLLDNPAAAAADDDA---NNDSPSSLGAELPT 120
           Q+LTGQDADFPDPS F SS  V G A P LL + AAA  +  +   NN+ P++LG ELP 
Sbjct: 61  QELTGQDADFPDPSKFDSSDEVAG-ATPGLLHSTAAAGQEYGSLMMNNNIPTTLGVELPA 120

Query: 121 EDEFLDSFYDDFDDLIFPPPVIGNFSGLLPAAAVTC-----ESYA 146
           ED  + SFYDDFDDLI PPP+IGNFSG LPAA  T      ESYA
Sbjct: 121 EDFLVGSFYDDFDDLILPPPLIGNFSGFLPAAEATAAAMMYESYA 164

[Close]

BLAST of Sed0014788 vs. ExPASy TrEMBL
Match: A0A0A0L3J8 (VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G431960 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 2.6e-37
Identity = 98/147 (66.67%), Postives = 108/147 (73.47%), Query Frame = 0


Query: 8   HRRKPTKKTKQP-NKKSKPIKVVYISNPMKVQTSASKFMALVQQLTGQDADFPDPSMFHS 67
           +RRKPTKKTKQP N+  KPIKVVYISNPMKVQTSAS FMALVQ+LTGQDADFPDPS F  
Sbjct: 18  YRRKPTKKTKQPKNRLKKPIKVVYISNPMKVQTSASGFMALVQELTGQDADFPDPSKFPP 77

Query: 68  SATVCGCAAPLLLDNPAAAAADDDAN-----NDSPSSLGAELPTEDEFLDSFYDDFDDLI 127
           SA   G A+   L N  ++  +DD       N + SSL  E+P ED+ L SFYDDFDDLI
Sbjct: 78  SAVCDGAASTDQLYNTISSGGEDDGATNLIVNSNNSSLVDEVPAEDDILGSFYDDFDDLI 137

Query: 128 FPPPVIGNFSGLLPA--AAVTCESYAR 147
           FP PVIGNFSGLLPA  AAV  ES AR
Sbjct: 138 FPSPVIGNFSGLLPAPVAAVVYESNAR 164

[Close]

BLAST of Sed0014788 vs. ExPASy TrEMBL
Match: A0A6J1EY87 (sigma factor binding protein 2, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111439409 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 4.9e-36
Identity = 96/145 (66.21%), Postives = 106/145 (73.10%), Query Frame = 0


Query: 6   GGHRRKPTKKTKQPNKKSKPIKVVYISNPMKVQTSASKFMALVQQLTGQDADFPDPSMFH 65
           G HRRKPTKKTKQPN K+KPIKVVYISNPMKVQ SAS FMALVQQLTGQDADFPDPS F 
Sbjct: 18  GVHRRKPTKKTKQPN-KNKPIKVVYISNPMKVQISASGFMALVQQLTGQDADFPDPSTFP 77

Query: 66  SSATVCGCAAPLLLDNPAAAAADDDANNDSPSSLGAELPTEDE-FLDSFYDDFDDLIFPP 125
            +A     A P + +      AD +  N++  SL  E+P ED+ FL SFYDD DDLIFPP
Sbjct: 78  PAAVRDAAAFPDIHN----TTADANLMNNNNPSLTVEIPMEDDPFLGSFYDDIDDLIFPP 137

Query: 126 PVIGNFSGLLPAAAVTC---ESYAR 147
           PVIGN+  LLPAAA T    ESYAR
Sbjct: 138 PVIGNYPALLPAAAATAVLYESYAR 157

[Close]

BLAST of Sed0014788 vs. ExPASy TrEMBL
Match: A0A5A7SJV9 (Sigma factor binding protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34G002890 PE=4 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 1.4e-35
Identity = 95/148 (64.19%), Postives = 107/148 (72.30%), Query Frame = 0


Query: 8   HRRKPTKKTKQPNKK-SKPIKVVYISNPMKVQTSASKFMALVQQLTGQDADFPDPSMFHS 67
           +RRKP KKTKQ NKK  KPIKVVYISNPMKVQTSAS+FMALVQ+LTGQDADFPDPS F  
Sbjct: 18  YRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKFPP 77

Query: 68  SATVCGCAAPLLLDNPAAAAADDD------ANNDSPSSLGAELPTEDEFLDSFYDDFDDL 127
           SA     A+   L N  +   DDD       N+++P SL  ++P ED+ L SFYDDFDDL
Sbjct: 78  SAVCDDAASTDQLYNTVSGGGDDDGASNLIVNSNNP-SLVDDVPAEDDILGSFYDDFDDL 137

Query: 128 IFPPPVIGNFSGLLPA--AAVTCESYAR 147
           IFPPPV+GN SGLLP   AAV  ES AR
Sbjct: 138 IFPPPVMGNLSGLLPGPMAAVVYESNAR 164

[Close]

BLAST of Sed0014788 vs. TAIR 10
Match: AT3G56710.1 (sigma factor binding protein 1 )

HSP 1 Score: 55.8 bits (133), Expect = 3.3e-08
Identity = 42/101 (41.58%), Postives = 54/101 (53.47%), Query Frame = 0


Query: 10  RKPTKKTKQPNKKSKPIKVVYISNPMKVQTSASKFMALVQQLTGQDADFPDPSMFHSSAT 69
           RK  K+ K+    +KPIKV YISNPM+VQT ASKF  LVQ+LTGQDA    P   +S ++
Sbjct: 24  RKSPKQKKKTTSTNKPIKVRYISNPMRVQTCASKFRELVQELTGQDAVDLQPEPIYSPSS 83

Query: 70  VCGCAAPLLLDNPAAAAADDDANNDSPSSLGAELPTEDEFL 111
                +P   +N A      +   +  S     L  ED FL
Sbjct: 84  DDHNLSP-PAENLAPRVLHQEPFGERDSDCYEPLNAEDMFL 123

[Close]

BLAST of Sed0014788 vs. TAIR 10
Match: AT2G41180.1 (VQ motif-containing protein )

HSP 1 Score: 53.5 bits (127), Expect = 1.6e-07
Identity = 30/53 (56.60%), Postives = 36/53 (67.92%), Query Frame = 0


Query: 10 RKPTKKTKQPNKKSKPIKVVYISNPMKVQTSASKFMALVQQLTGQDADFPDPS 63
          R P K+ ++     KPIKV YISNPM+V+T  SKF  LVQ+LTGQDA    PS
Sbjct: 21 RIPPKQKRKSTTTHKPIKVRYISNPMRVETCPSKFRELVQELTGQDAADLPPS 73

The following BLAST results are available for this feature:

BLAST of Sed0014788 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022931925.1	2.3e-43	66.46	sigma factor binding protein 1, chloroplastic-like [Cucurbita moschata] >KAG6595...	[more]
XP_023518833.1	5.0e-43	65.45	uncharacterized protein LOC111782231 [Cucurbita pepo subsp. pepo]	[more]
KAG7027424.1	6.6e-43	64.88	Sigma factor binding protein 1, chloroplastic, partial [Cucurbita argyrosperma s...	[more]
XP_038882812.1	5.6e-42	70.55	sigma factor binding protein 2, chloroplastic-like [Benincasa hispida]	[more]
XP_022966643.1	2.1e-41	64.24	uncharacterized protein LOC111466266 [Cucurbita maxima]	[more]

BLAST of Sed0014788 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LDH1	4.6e-07	41.58	Sigma factor binding protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN...	[more]
O80669	2.3e-06	56.60	Sigma factor binding protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN...	[more]

BLAST of Sed0014788 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F0S9	1.1e-43	66.46	sigma factor binding protein 1, chloroplastic-like OS=Cucurbita moschata OX=3662...	[more]
A0A6J1HSP6	1.0e-41	64.24	uncharacterized protein LOC111466266 OS=Cucurbita maxima OX=3661 GN=LOC111466266...	[more]
A0A0A0L3J8	2.6e-37	66.67	VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G431960 PE=4 SV=...	[more]
A0A6J1EY87	4.9e-36	66.21	sigma factor binding protein 2, chloroplastic-like OS=Cucurbita moschata OX=3662...	[more]
A0A5A7SJV9	1.4e-35	64.19	Sigma factor binding protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]

BLAST of Sed0014788 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G56710.1	3.3e-08	41.58	sigma factor binding protein 1	[more]
AT2G41180.1	1.6e-07	56.60	VQ motif-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008889	VQ	PFAM	PF05678	VQ	coord: 31..56 e-value: 6.2E-12 score: 44.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..27
None	No IPR available	PANTHER	PTHR33624:SF2	SIGMA FACTOR BINDING PROTEIN 1, CHLOROPLASTIC	coord: 7..139
IPR039335	Sigma factor binding protein 1/2	PANTHER	PTHR33624	SIGMA FACTOR BINDING PROTEIN 1, CHLOROPLASTIC	coord: 7..139

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0014788.1	Sed0014788.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051091	positive regulation of DNA-binding transcription factor activity