Sed0014779 (gene) Chayote v1

Overview


Name	Sed0014779
Type	gene
Organism	Sechium edule (Chayote v1)
Description	ribonuclease III domain-containing protein RNC1, chloroplastic
Location	LG10: 4874360 .. 4879858 (-)
RNA-Seq Expression	Sed0014779
Synteny	Sed0014779

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTACACTTCAGCAGTCTTAACCTTATCCATTCCTCTTCTCCTCTCAACCCCTCCAAAAACCCTGCAACAAACGGCAAAATATTCAACTTCACAGCCAATATTTTCCATTTCCCAATCCATAAACCCCCAATGCTCAGTTTCTCATAGCCAAAGTTCTTAAAATAAACCCACTCAGCGTTATCTTCATGATCCACAACCCAATGGAACTTTCTTCTTCTTTTGTTCAATTCTCATCCCCAAATCCCAATTTCTCTTTCTCTTCTTCCTTAACCCCATTTCCTCTAAAAACCCACATCAATAATCCCAACTCCCAAAACCCCACATCGAGAAATTTGCGTATATTTGCAGTTGCAATCGACCCACAACAAGAATCGCCCAAAAAAAACCCTCAAAGACTGCTCAAAGAGCTGGCGGAGCGAAAACGAGCCACATCGCCGAAGAAGAAGGCACCCCCAAGAAGGTACATTCTTAGACCGCCATTGGATGATAAGAAATTAGCGGAAAGGTTTCTCAATAGCCCTCAATTAACGCTCAAATCATTCCCATTACTGAGTTCTTGTTTACCGTCTTCGCGGCTTAACAATGCCGATAAGACTTGGATGGACGAGTACTTGTTGGAAGCCAAACAAGCCCTTGGATACCCACTTGAGCCCTCTGATAGCTATGGAGATGACAATCCTGCTAAGCAATTTGATACTTTGTTGTATTTGGCTTTTCAGCATCCATGTTGCGAAAGAACGAAGGCTCGGCATATACGATCCGGGCATTCGAGGCTTTTGTTTTTGGGGCAATATGTGATTGAATTGGCGTTGGCTGAGTATTTTTTGCTGAGGTATCCTAGGGAACCGCCTGGTCCTATGAGGGAAAGGGTTTTTGCTTTGATTGGGAAGAGGAACCTTCCTAAGTGGATTAAAGCTGCTAGTTTACAGAATTTGATATTCCCTTATGATGATATGGATAAGATGATCAGGAAGGACCGTGAACCTCCTGTGAAGTAAGTTTGGTACTGTCTTTTCATTGGTTCTATTTCCTCTTTTTTTTCCAATTAATTGATGCTATGAGTTAGATATTTGTAAGAAATATTTTTTGAGTTTGAGTGATTGGGAAGTTATATCATTGATGTGTTAACGGTTAAGCCTATGTTAGCCTTAGGCTTGAGAAGAATCACAAAATGTGGGATCATTGTTATTAATTTTTTTTTTTTATATCTGCGAGTGTCTTGGCCATCTTACTCGTAGGTTGACTATTCTTACGGAAAAGATCACCTAATCTTACAACATTTGATTGTCAAGGAAACCCGTAGAAAATTAATTCTTAGGTAGGTGGCCACCATGAGTTGAACTCAACTTTTTGGTTACCTAAAGTGCTCTTGACCACTAGGCCACCAACCCACGATGGTTCAAAATGTGGGATCATTGAAGTGAAGAGTGTTAAATGCTTTTCGTAAGTTTCTTTTTTGAATTCAATAACATTTGGGATGGGAAATTGAACCCATAACCTCTTGGTTTTGAATGCGGTAGGAAGCTGATTTTGCAGTTTGGCAATAATGCCTTGTATTTGTATAGTTGATTAGAAACTAGGATTTATGGGGTAGAAGAGGCGTCAAGAGGGGGGCATTTGTTTAGGATGAACTTCGAAGGCATAATTGTTGCTCCCAGAAATTCAAAGTTAGTTGAGCTTAGTTTTGATGGTTATGGGCACTGAGCTGAGCTTCATTGTTTAGATTGCCATCCATTTACTATAGATGATGCTACAAAAACCAGCTAGAGCAATGTTAAAGAAGTTGTTCTACTGAAAATGTGGCATAAAGGCTTAATTTAAAGTGTTATTTAGGTCCTTTAAAAAAAAGTGTGATTTAGGTGGCTTGGTGTCACGGGATCAACTTGATATGATCCAGGATCTAGATTATATCAAAAGTAAAAGAATACAAGATAAGCCAAGTTTTGATAGGTTTGGGAACCTCCCCTCTCAAGAGAATCTCTTGAGCCCTACAATAAATCACTCAATAACTCACTCAATAATTGGATGCCTCAAACCTAGGCTAACCCTCTCTATTTATAATAAAATACTCTAACTTACTCTCCAAGTAATTGCAACTTACTCCCCAAGTAATTGCTAACAGACCCTTATATTATTCCTATTTCTACTAAGACCCAACCCTATCACTACCGGCCCCTAAAAAAATACACCTTGTCCCCAAGTAATTTCCTCTTTGACTTCTCTAAAACATCTTTTTAGGTCTTCTCTAAGACTTTGCAACTGTTCTTGAATTAAAAGAAGAAGTTCTCGATCCATCTCTACAACCAAGAATCGAACGGCTCTGATACCAATTGATATGATCCAGGATCTTGATTATATCAAAAGTAAAAGAATACAAGATAAGTCAAGTTTTGCAATTACTTGGAACCTCCCCTCTCAAGAGAATCTCTTGAACCCTACAATAAATCACTCAATAATTGGATGCCTCAAACCTAGGCTAACCCTCTCTATTTATAATAAAATACCCTAACTTACTCTCCAAGTAATTGCAACTTACTCCCCAAGTAATTGCTAACATACCCTTATATTATTCCTATTTCTACTAAGACCCAACCCTATCACTACCGGCCCCTAAAAAAATACACCTTGTCCCCAAGTAATTTCCTCTTTGATTTCTCTAAAACATCTTTTTAGGTCTTCTCTAAGACTTTGCAACTGTTCTTGAATTAAAAGAAGAAGTTCTCGATCCATCTCTACAACCAAGAATCGAACGGCTCTGATACCAATTGATATGATCCAGGATCTAGATTATATCAAAAGTAAAAGAATACAAGATAAGCCAAGTTTTGCAATTACTTGGAACCTCCCCTCTCAAGAGAATCTCTTGAACCCTACAATAAATCACTCAATAATTGGATGCCTCAAACCTAGGCTAACCCTCTCTATTTATAATAAAATACCCTAACTTACTCTCCAAGTAATTGCAACTTACTCTCCAAGTAATTGCTAACATACCCTTATATTATTCCTATTTCTACTAAGACCCAACCCTATCACAACTCTCTGTAGGTTATGGACTCCTTCCATGAATCTGATTTCCTTCCAAATTCGTCTGTTTCGCGCAAACTTGCTTTCAGGCGTTATCTTTTACCAACATGGGTATCCATTTGCGTTCTTTAATCTAGCTCTGATACCATTTGTCACGAGATCAATAATAGGTTAAAGAATTGGTCTTGTGATGCTTGGTACTTTGGTGGGACTTGGGAGATTGTATTTTCTGTACCCACACTTGTGTATTTAGTTTGCATGATCCATCTAATTCACCGTTTTTATGTTGGAACGTGTACTGTAGGTTAATGTGGTGAAACATGTATTATTTCTAAATTCATTTTACCTGGTACTGGTAGAATTGTGTTTTATTTTTTCTTTCATTCTCTTTTATCCGTAACATTTGTGCTACCGTTACCCTGGTAGCAGCAAAGGTTGGGAAAAAAATACTCGAGACAAATCGTGTATGCACTTTTACATCTAACCATGGAACTACTAACCCTTGTATTTCTTAATGAATTATCTTACACTTAATTAAGTAGATTATTAACCTTAAACTCCTATTGTTTCTTTTTCTAAAACAGTCTGATTCTATTTATCATGTCAAACAATTAAATCTAAAATTTATTTTCTTCAAGCAGATCTGTATTTTGGGCCTTGTTTGGGGCAATATATTTATGTTTTGGAATGCCAGAAGTGTATCGGGTCCTTTTTGAGGTGTTTGGAATGGATCCAGATGCAGAGGAATGTGAACCGAGGTTACGCCGGCAACTCGAAGATGTAGATTATGTTTCTGTTGAATTTGAAGACAAAAAGATAAGCTGGCAAGATATGGTTGCCTATAAGGCAAGTTTTATGTTTATTCTTAATACCACAGTGAACTATGTCTTATACTATTGTTTTCATCTTCTTATGGGATAAAATGAACTAATGTATTCATGTTTTTGTTCCCTCATTTCTCAGCCTCCAGAAGATGCTTTATTTGCCCACCCTAGGCTCTTTAGGGCCTGTGTCCCACCCGGCATGCATCGATTCCGGGGTAATATATGGGATTACGATAGCCGACCTCAAGTCATGAAAGCACTAGGGTACCCTATACCTGTTAATGATAAAATTCCCGACATCACAGAAGCGAGAAATATTGAACTCGGTCTCGGACTTCAGGTAGCCCCTCCCCACGTTACTTTTCTTTCTGATTTTTATATTTCCGTGAGTGTCTGGACTAGCTTACTCGCGATCAATTATTCTCACGAGACATACTACTTGATTCTACCACATTTAGATGCCTAAAAACTTCGTAGGAAATTATTTTCTTAGCAGGTTACCACCATGAATTGAATCCATGACCTTTTAGATCTTTAAGACCGTCTTTGATCACTATGCCAACCCATAATAGTTCATAACTACCTGATGATCATAGTATTATTCTATTCTCAATGTCGGTTTCTATTGTCATGTCCATGTGGCTGTGACTGGCAATGTGATATTATGATCTTGATTGGATTTTTTGTGCAGAGGATAATTTAAAAATGTGTTAGTCTAAAATCTCTGCTTGATGTTTGATATAGATCAATGTAATGGCTTTAAGTAACTTTTGTGGCCATATGTGAATTCTGTTAAACATCATGACCAAGAAAATCTCAGGCAATTTTTTTAATTAAATGCAGCTTTGCTTTTTGCACCCATCAAAACACAAGTTTGAGCACCCGCGTTTCTGCTACGAACGATTGGAATACGTCGGCCAAAAGATCCAGGTAAGACACTTTACATGTATCAGGGAGGACAGACTCACCTTTTATTTATAGATCAAGAAACTTATAGCGGTCCATTCGACTGTGTTCGTTCTAGGATATCGTGATGGCCGAACGATTGTTGATGAAGCATTTAGATGCACCGGGAAAGTGGTTGCAGGAGAAGCACCGGCGGTTGCTCATGAACAAGTTTTGCGGGCGGTATTTGAGGGAGAAATATCTACATAAACTCATCATCTACTCCGAAAAAGTTCAAGATGCATACGAGAACAACCGGAGGCTTCGAAACCCGTCCACCACGGCTGTGCAGCAAGCCCTTCATGGACTTTCTTATGCAGTTTATGGAAAGCCTGATGTGAGACGCCTCATGTTTGAGGTTTTTGATTTTGAGCAAATCCAACCTAAAGAAGTTTGAGGATCTAAAAGGTAGATGATGCAAGCAAAGGGATAAAAAGGGCAAAAATGGGAATTGCTTCTATCTTCATGTCCCTCAGCCATAGATTCTTTCTTTTCTCTATAAGGAAAATCTTCTTAATTGAAGTAGATGTGGTGCAAAATCTTGGTCAAAGAAGCTGATGTGAAATGTATATGCATTGGTAATATTTTTTAAATGCTTTTTTCTTGCAATATTCTCTCAAATCCTGTTGCTGTCTCTTTGATACCAAAAAGAAGAAAAAAACAAATAAATAAATTAACTTATTCATGAATTATTTATTGTAAT

mRNA sequence

CTACACTTCAGCAGTCTTAACCTTATCCATTCCTCTTCTCCTCTCAACCCCTCCAAAAACCCTGCAACAAACGGCAAAATATTCAACTTCACAGCCAATATTTTCCATTTCCCAATCCATAAACCCCCAATGCTCAGTTTCTCATAGCCAAAGTTCTTAAAATAAACCCACTCAGCGTTATCTTCATGATCCACAACCCAATGGAACTTTCTTCTTCTTTTGTTCAATTCTCATCCCCAAATCCCAATTTCTCTTTCTCTTCTTCCTTAACCCCATTTCCTCTAAAAACCCACATCAATAATCCCAACTCCCAAAACCCCACATCGAGAAATTTGCGTATATTTGCAGTTGCAATCGACCCACAACAAGAATCGCCCAAAAAAAACCCTCAAAGACTGCTCAAAGAGCTGGCGGAGCGAAAACGAGCCACATCGCCGAAGAAGAAGGCACCCCCAAGAAGGTACATTCTTAGACCGCCATTGGATGATAAGAAATTAGCGGAAAGGTTTCTCAATAGCCCTCAATTAACGCTCAAATCATTCCCATTACTGAGTTCTTGTTTACCGTCTTCGCGGCTTAACAATGCCGATAAGACTTGGATGGACGAGTACTTGTTGGAAGCCAAACAAGCCCTTGGATACCCACTTGAGCCCTCTGATAGCTATGGAGATGACAATCCTGCTAAGCAATTTGATACTTTGTTGTATTTGGCTTTTCAGCATCCATGTTGCGAAAGAACGAAGGCTCGGCATATACGATCCGGGCATTCGAGGCTTTTGTTTTTGGGGCAATATGTGATTGAATTGGCGTTGGCTGAGTATTTTTTGCTGAGGTATCCTAGGGAACCGCCTGGTCCTATGAGGGAAAGGGTTTTTGCTTTGATTGGGAAGAGGAACCTTCCTAAGTGGATTAAAGCTGCTAGTTTACAGAATTTGATATTCCCTTATGATGATATGGATAAGATGATCAGGAAGGACCGTGAACCTCCTGTGAAATCTGTATTTTGGGCCTTGTTTGGGGCAATATATTTATGTTTTGGAATGCCAGAAGTGTATCGGGTCCTTTTTGAGGTGTTTGGAATGGATCCAGATGCAGAGGAATGTGAACCGAGGTTACGCCGGCAACTCGAAGATGTAGATTATGTTTCTGTTGAATTTGAAGACAAAAAGATAAGCTGGCAAGATATGGTTGCCTATAAGCCTCCAGAAGATGCTTTATTTGCCCACCCTAGGCTCTTTAGGGCCTGTGTCCCACCCGGCATGCATCGATTCCGGGGTAATATATGGGATTACGATAGCCGACCTCAAGTCATGAAAGCACTAGGGTACCCTATACCTGTTAATGATAAAATTCCCGACATCACAGAAGCGAGAAATATTGAACTCGGTCTCGGACTTCAGCTTTGCTTTTTGCACCCATCAAAACACAAGTTTGAGCACCCGCGTTTCTGCTACGAACGATTGGAATACGTCGGCCAAAAGATCCAGGATATCGTGATGGCCGAACGATTGTTGATGAAGCATTTAGATGCACCGGGAAAGTGGTTGCAGGAGAAGCACCGGCGGTTGCTCATGAACAAGTTTTGCGGGCGGTATTTGAGGGAGAAATATCTACATAAACTCATCATCTACTCCGAAAAAGTTCAAGATGCATACGAGAACAACCGGAGGCTTCGAAACCCGTCCACCACGGCTGTGCAGCAAGCCCTTCATGGACTTTCTTATGCAGTTTATGGAAAGCCTGATGTGAGACGCCTCATGTTTGAGGTTTTTGATTTTGAGCAAATCCAACCTAAAGAAGTTTGAGGATCTAAAAGGTAGATGATGCAAGCAAAGGGATAAAAAGGGCAAAAATGGGAATTGCTTCTATCTTCATGTCCCTCAGCCATAGATTCTTTCTTTTCTCTATAAGGAAAATCTTCTTAATTGAAGTAGATGTGGTGCAAAATCTTGGTCAAAGAAGCTGATGTGAAATGTATATGCATTGGTAATATTTTTTAAATGCTTTTTTCTTGCAATATTCTCTCAAATCCTGTTGCTGTCTCTTTGATACCAAAAAGAAGAAAAAAACAAATAAATAAATTAACTTATTCATGAATTATTTATTGTAAT

Coding sequence (CDS)

ATGATCCACAACCCAATGGAACTTTCTTCTTCTTTTGTTCAATTCTCATCCCCAAATCCCAATTTCTCTTTCTCTTCTTCCTTAACCCCATTTCCTCTAAAAACCCACATCAATAATCCCAACTCCCAAAACCCCACATCGAGAAATTTGCGTATATTTGCAGTTGCAATCGACCCACAACAAGAATCGCCCAAAAAAAACCCTCAAAGACTGCTCAAAGAGCTGGCGGAGCGAAAACGAGCCACATCGCCGAAGAAGAAGGCACCCCCAAGAAGGTACATTCTTAGACCGCCATTGGATGATAAGAAATTAGCGGAAAGGTTTCTCAATAGCCCTCAATTAACGCTCAAATCATTCCCATTACTGAGTTCTTGTTTACCGTCTTCGCGGCTTAACAATGCCGATAAGACTTGGATGGACGAGTACTTGTTGGAAGCCAAACAAGCCCTTGGATACCCACTTGAGCCCTCTGATAGCTATGGAGATGACAATCCTGCTAAGCAATTTGATACTTTGTTGTATTTGGCTTTTCAGCATCCATGTTGCGAAAGAACGAAGGCTCGGCATATACGATCCGGGCATTCGAGGCTTTTGTTTTTGGGGCAATATGTGATTGAATTGGCGTTGGCTGAGTATTTTTTGCTGAGGTATCCTAGGGAACCGCCTGGTCCTATGAGGGAAAGGGTTTTTGCTTTGATTGGGAAGAGGAACCTTCCTAAGTGGATTAAAGCTGCTAGTTTACAGAATTTGATATTCCCTTATGATGATATGGATAAGATGATCAGGAAGGACCGTGAACCTCCTGTGAAATCTGTATTTTGGGCCTTGTTTGGGGCAATATATTTATGTTTTGGAATGCCAGAAGTGTATCGGGTCCTTTTTGAGGTGTTTGGAATGGATCCAGATGCAGAGGAATGTGAACCGAGGTTACGCCGGCAACTCGAAGATGTAGATTATGTTTCTGTTGAATTTGAAGACAAAAAGATAAGCTGGCAAGATATGGTTGCCTATAAGCCTCCAGAAGATGCTTTATTTGCCCACCCTAGGCTCTTTAGGGCCTGTGTCCCACCCGGCATGCATCGATTCCGGGGTAATATATGGGATTACGATAGCCGACCTCAAGTCATGAAAGCACTAGGGTACCCTATACCTGTTAATGATAAAATTCCCGACATCACAGAAGCGAGAAATATTGAACTCGGTCTCGGACTTCAGCTTTGCTTTTTGCACCCATCAAAACACAAGTTTGAGCACCCGCGTTTCTGCTACGAACGATTGGAATACGTCGGCCAAAAGATCCAGGATATCGTGATGGCCGAACGATTGTTGATGAAGCATTTAGATGCACCGGGAAAGTGGTTGCAGGAGAAGCACCGGCGGTTGCTCATGAACAAGTTTTGCGGGCGGTATTTGAGGGAGAAATATCTACATAAACTCATCATCTACTCCGAAAAAGTTCAAGATGCATACGAGAACAACCGGAGGCTTCGAAACCCGTCCACCACGGCTGTGCAGCAAGCCCTTCATGGACTTTCTTATGCAGTTTATGGAAAGCCTGATGTGAGACGCCTCATGTTTGAGGTTTTTGATTTTGAGCAAATCCAACCTAAAGAAGTTTGA

Protein sequence

MIHNPMELSSSFVQFSSPNPNFSFSSSLTPFPLKTHINNPNSQNPTSRNLRIFAVAIDPQQESPKKNPQRLLKELAERKRATSPKKKAPPRRYILRPPLDDKKLAERFLNSPQLTLKSFPLLSSCLPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPCCERTKARHIRSGHSRLLFLGQYVIELALAEYFLLRYPREPPGPMRERVFALIGKRNLPKWIKAASLQNLIFPYDDMDKMIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAEECEPRLRRQLEDVDYVSVEFEDKKISWQDMVAYKPPEDALFAHPRLFRACVPPGMHRFRGNIWDYDSRPQVMKALGYPIPVNDKIPDITEARNIELGLGLQLCFLHPSKHKFEHPRFCYERLEYVGQKIQDIVMAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKYLHKLIIYSEKVQDAYENNRRLRNPSTTAVQQALHGLSYAVYGKPDVRRLMFEVFDFEQIQPKEV

Homology

[Close]

BLAST of Sed0014779 vs. NCBI nr
Match: XP_022133289.1 (ribonuclease III domain-containing protein RNC1, chloroplastic [Momordica charantia])

HSP 1 Score: 1040.0 bits (2688), Expect = 7.0e-300
Identity = 503/534 (94.19%), Postives = 518/534 (97.00%), Query Frame = 0


Query: 6   MELSSSFVQFSSPNPNFSFSSSLTPFPLKTHINNPNSQNPTSRNLRIFAVAIDPQQESPK 65
           MELSSSFVQ +SP PN+SFSSSLTPF  K + NNP+  NPTS NLRIFAVA+DPQQE PK
Sbjct: 1   MELSSSFVQLASPTPNYSFSSSLTPFHFKIYPNNPSFPNPTSGNLRIFAVAVDPQQELPK 60

Query: 66  KNPQRLLKELAERKRATSPKKKAPPRRYILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC 125
            NPQRLLKELAERKRATSPKK+ PPRR+ILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC
Sbjct: 61  NNPQRLLKELAERKRATSPKKRVPPRRFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC 120

Query: 126 LPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPCCERT 185
           LPSSRLNNADKTWMDEYLLEAKQALGYPLEPSD+YGDDNPAKQFDTLLYLAFQHP CERT
Sbjct: 121 LPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDNYGDDNPAKQFDTLLYLAFQHPSCERT 180

Query: 186 KARHIRSGHSRLLFLGQYVIELALAEYFLLRYPREPPGPMRERVFALIGKRNLPKWIKAA 245
           KARHIRSGHSRLLFLGQYV+ELALAEYFL RYPRE PGPMRERVFALIGKR+LPKWIKAA
Sbjct: 181 KARHIRSGHSRLLFLGQYVLELALAEYFLQRYPRESPGPMRERVFALIGKRSLPKWIKAA 240

Query: 246 SLQNLIFPYDDMDKMIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAEE 305
           SLQNLIFPYDDMDKMIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAEE
Sbjct: 241 SLQNLIFPYDDMDKMIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAEE 300

Query: 306 CEPRLRRQLEDVDYVSVEFEDKKISWQDMVAYKPPEDALFAHPRLFRACVPPGMHRFRGN 365
           CEPRLRRQLEDVDYVSVEFEDKKISWQDMVAYKPPEDALFAHPRLFRACVPPGMHRFRGN
Sbjct: 301 CEPRLRRQLEDVDYVSVEFEDKKISWQDMVAYKPPEDALFAHPRLFRACVPPGMHRFRGN 360

Query: 366 IWDYDSRPQVMKALGYPIPVNDKIPDITEARNIELGLGLQLCFLHPSKHKFEHPRFCYER 425
           IWDYDSRPQVM+ALGYP+PV+DKIPDITEARNIELGLGLQLCFLHPSKHKFEHPRFCYER
Sbjct: 361 IWDYDSRPQVMQALGYPVPVSDKIPDITEARNIELGLGLQLCFLHPSKHKFEHPRFCYER 420

Query: 426 LEYVGQKIQDIVMAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKYLHKLIIYSEK 485
           LEY+GQKIQDIVMAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKYLHKLIIYSEK
Sbjct: 421 LEYLGQKIQDIVMAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKYLHKLIIYSEK 480

Query: 486 VQDAYENNRRLRNPSTTAVQQALHGLSYAVYGKPDVRRLMFEVFDFEQIQPKEV 540
           VQDAYENNRRLRNP+TTAVQQALHGLSYAVYGKPDVRRLMFEVFDFEQIQPK V
Sbjct: 481 VQDAYENNRRLRNPATTAVQQALHGLSYAVYGKPDVRRLMFEVFDFEQIQPKAV 534

[Close]

BLAST of Sed0014779 vs. NCBI nr
Match: XP_008440359.1 (PREDICTED: ribonuclease III domain-containing protein RNC1, chloroplastic [Cucumis melo])

HSP 1 Score: 1037.3 bits (2681), Expect = 4.5e-299
Identity = 502/534 (94.01%), Postives = 518/534 (97.00%), Query Frame = 0


Query: 6   MELSSSFVQFSSPNPNFSFSSSLTPFPLKTHINNPNSQNPTSRNLRIFAVAIDPQQESPK 65
           MELSSSFV+ SSP+PN+SFSSSLTPF +K H N+P   NP+S NLRIFAVA+DPQQE PK
Sbjct: 1   MELSSSFVKLSSPSPNYSFSSSLTPFIVKIHPNHPIFPNPSSGNLRIFAVAVDPQQELPK 60

Query: 66  KNPQRLLKELAERKRATSPKKKAPPRRYILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC 125
            NPQRLLKELAERKRATSPKKK PPRR+ILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC
Sbjct: 61  NNPQRLLKELAERKRATSPKKKVPPRRFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC 120

Query: 126 LPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPCCERT 185
           LPSSRLNNADKTWMDEYLLEAKQALGYPL+PSDSYGDDNPAKQFDTLLYLAFQHP CERT
Sbjct: 121 LPSSRLNNADKTWMDEYLLEAKQALGYPLDPSDSYGDDNPAKQFDTLLYLAFQHPSCERT 180

Query: 186 KARHIRSGHSRLLFLGQYVIELALAEYFLLRYPREPPGPMRERVFALIGKRNLPKWIKAA 245
           KARHIRSGHSRLLFLGQYVIELALAEYFLLRYPRE PGPMRERVFALIGKRNLPKWIKAA
Sbjct: 181 KARHIRSGHSRLLFLGQYVIELALAEYFLLRYPRESPGPMRERVFALIGKRNLPKWIKAA 240

Query: 246 SLQNLIFPYDDMDKMIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAEE 305
           SLQNLIFPYDDMDKMIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAEE
Sbjct: 241 SLQNLIFPYDDMDKMIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAEE 300

Query: 306 CEPRLRRQLEDVDYVSVEFEDKKISWQDMVAYKPPEDALFAHPRLFRACVPPGMHRFRGN 365
           CEPRLRRQLEDVDYVSVEFEDK+ISWQDM++YKPPEDALFAHPRLFRACVPPGMHRFRGN
Sbjct: 301 CEPRLRRQLEDVDYVSVEFEDKRISWQDMISYKPPEDALFAHPRLFRACVPPGMHRFRGN 360

Query: 366 IWDYDSRPQVMKALGYPIPVNDKIPDITEARNIELGLGLQLCFLHPSKHKFEHPRFCYER 425
           IWDYDSRPQVM+ALGYP+PV DKIPDITEARNIELGLGLQLCFLHPSKHKFEHPRFCYER
Sbjct: 361 IWDYDSRPQVMQALGYPLPVVDKIPDITEARNIELGLGLQLCFLHPSKHKFEHPRFCYER 420

Query: 426 LEYVGQKIQDIVMAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKYLHKLIIYSEK 485
           LEY+GQKIQDIVMAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKYLHKLIIYSEK
Sbjct: 421 LEYLGQKIQDIVMAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKYLHKLIIYSEK 480

Query: 486 VQDAYENNRRLRNPSTTAVQQALHGLSYAVYGKPDVRRLMFEVFDFEQIQPKEV 540
           VQDAYENNRRLRNP+TTAVQQALHGLSY VYGKPDVRRLMFEVFDFEQIQPK V
Sbjct: 481 VQDAYENNRRLRNPATTAVQQALHGLSYVVYGKPDVRRLMFEVFDFEQIQPKAV 534

[Close]

BLAST of Sed0014779 vs. NCBI nr
Match: XP_038883471.1 (ribonuclease III domain-containing protein RNC1, chloroplastic [Benincasa hispida])

HSP 1 Score: 1036.9 bits (2680), Expect = 5.9e-299
Identity = 502/534 (94.01%), Postives = 517/534 (96.82%), Query Frame = 0


Query: 6   MELSSSFVQFSSPNPNFSFSSSLTPFPLKTHINNPNSQNPTSRNLRIFAVAIDPQQESPK 65
           MELSSSFV+ SSP+PN+SFSSSLTPF +K H N+P   NP+S NLRIFAVA+DPQQE PK
Sbjct: 1   MELSSSFVKLSSPSPNYSFSSSLTPFIVKIHPNHPIFPNPSSANLRIFAVAVDPQQELPK 60

Query: 66  KNPQRLLKELAERKRATSPKKKAPPRRYILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC 125
            NPQRLLKELAERKRATSPKKK PP+R+ILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC
Sbjct: 61  NNPQRLLKELAERKRATSPKKKVPPKRFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC 120

Query: 126 LPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPCCERT 185
           LPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHP CERT
Sbjct: 121 LPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERT 180

Query: 186 KARHIRSGHSRLLFLGQYVIELALAEYFLLRYPREPPGPMRERVFALIGKRNLPKWIKAA 245
           KARHIRSGHSRLLFLGQYVIELALAEYFL RYPRE PGPMRERVFALIGKRNLPKWIKAA
Sbjct: 181 KARHIRSGHSRLLFLGQYVIELALAEYFLQRYPRESPGPMRERVFALIGKRNLPKWIKAA 240

Query: 246 SLQNLIFPYDDMDKMIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAEE 305
           SLQNLIFPYDDMDKMIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAEE
Sbjct: 241 SLQNLIFPYDDMDKMIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAEE 300

Query: 306 CEPRLRRQLEDVDYVSVEFEDKKISWQDMVAYKPPEDALFAHPRLFRACVPPGMHRFRGN 365
           CEPRLRRQLEDVDYVSVEFEDK+ISWQDMV+YKPPEDALFAHPRLFRACVPPGMHRFRGN
Sbjct: 301 CEPRLRRQLEDVDYVSVEFEDKRISWQDMVSYKPPEDALFAHPRLFRACVPPGMHRFRGN 360

Query: 366 IWDYDSRPQVMKALGYPIPVNDKIPDITEARNIELGLGLQLCFLHPSKHKFEHPRFCYER 425
           IWDYDSRPQVM+ALGYP+PV DKIPDITEARNIELGLGLQLCFLHPSKHKFEHPRFCYER
Sbjct: 361 IWDYDSRPQVMQALGYPLPVTDKIPDITEARNIELGLGLQLCFLHPSKHKFEHPRFCYER 420

Query: 426 LEYVGQKIQDIVMAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKYLHKLIIYSEK 485
           LEY+GQKIQDIVMAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKYLHKLIIYSEK
Sbjct: 421 LEYLGQKIQDIVMAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKYLHKLIIYSEK 480

Query: 486 VQDAYENNRRLRNPSTTAVQQALHGLSYAVYGKPDVRRLMFEVFDFEQIQPKEV 540
           VQDAYENNRRLRNP+TTAVQQALHGLSY VYGKPDVRRLMFEVFDFEQIQPK V
Sbjct: 481 VQDAYENNRRLRNPATTAVQQALHGLSYVVYGKPDVRRLMFEVFDFEQIQPKAV 534

[Close]

BLAST of Sed0014779 vs. NCBI nr
Match: XP_023543359.1 (ribonuclease III domain-containing protein RNC1, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 1034.2 bits (2673), Expect = 3.8e-298
Identity = 499/534 (93.45%), Postives = 515/534 (96.44%), Query Frame = 0


Query: 6   MELSSSFVQFSSPNPNFSFSSSLTPFPLKTHINNPNSQNPTSRNLRIFAVAIDPQQESPK 65
           MELSS FV+ SSP PNFSFSSSLTPF +K H NNP+  NP+S +LRIFAVA+DPQQE PK
Sbjct: 1   MELSSCFVKLSSPTPNFSFSSSLTPFVVKIHPNNPSLSNPSSGSLRIFAVAVDPQQELPK 60

Query: 66  KNPQRLLKELAERKRATSPKKKAPPRRYILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC 125
            NPQRLLKEL ERKRATSPKKK PPRR+ILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC
Sbjct: 61  NNPQRLLKELEERKRATSPKKKVPPRRFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC 120

Query: 126 LPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPCCERT 185
           LPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHP CERT
Sbjct: 121 LPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERT 180

Query: 186 KARHIRSGHSRLLFLGQYVIELALAEYFLLRYPREPPGPMRERVFALIGKRNLPKWIKAA 245
           KARHIRSGHSRLLFLGQYVIELALAEYFL RYPRE PGPMRERVFALIGKRNLP+WIKAA
Sbjct: 181 KARHIRSGHSRLLFLGQYVIELALAEYFLQRYPRESPGPMRERVFALIGKRNLPQWIKAA 240

Query: 246 SLQNLIFPYDDMDKMIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAEE 305
           SLQNLIFPYDDMDKM+RKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAEE
Sbjct: 241 SLQNLIFPYDDMDKMVRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAEE 300

Query: 306 CEPRLRRQLEDVDYVSVEFEDKKISWQDMVAYKPPEDALFAHPRLFRACVPPGMHRFRGN 365
           CEPRLRRQLEDVDYVSVEFEDKKISWQDMVAYKPPEDALFAHPRLFRACVPPGMHRFRGN
Sbjct: 301 CEPRLRRQLEDVDYVSVEFEDKKISWQDMVAYKPPEDALFAHPRLFRACVPPGMHRFRGN 360

Query: 366 IWDYDSRPQVMKALGYPIPVNDKIPDITEARNIELGLGLQLCFLHPSKHKFEHPRFCYER 425
           IWDYDSRPQVM+ALGYP+PV DKIP+ITEARNIELGLGLQLCFLHPSKHKFEHPRFCYER
Sbjct: 361 IWDYDSRPQVMQALGYPVPVTDKIPEITEARNIELGLGLQLCFLHPSKHKFEHPRFCYER 420

Query: 426 LEYVGQKIQDIVMAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKYLHKLIIYSEK 485
           LEY+GQKIQDIVMAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKYLHKLI+YSE+
Sbjct: 421 LEYLGQKIQDIVMAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKYLHKLIVYSEQ 480

Query: 486 VQDAYENNRRLRNPSTTAVQQALHGLSYAVYGKPDVRRLMFEVFDFEQIQPKEV 540
           VQDAYENNRRLRNP+TTAVQQALHGLSY VYGKPDVRRLMFEVFDFEQIQPK V
Sbjct: 481 VQDAYENNRRLRNPATTAVQQALHGLSYTVYGKPDVRRLMFEVFDFEQIQPKAV 534

[Close]

BLAST of Sed0014779 vs. NCBI nr
Match: XP_022949934.1 (ribonuclease III domain-containing protein RNC1, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 1033.9 bits (2672), Expect = 5.0e-298
Identity = 499/534 (93.45%), Postives = 514/534 (96.25%), Query Frame = 0


Query: 6   MELSSSFVQFSSPNPNFSFSSSLTPFPLKTHINNPNSQNPTSRNLRIFAVAIDPQQESPK 65
           MELSS FV+ SSP PNFSFSSSLTPF +K H NNP+  NP+S  LRIFAVA+DPQQE PK
Sbjct: 1   MELSSCFVKLSSPTPNFSFSSSLTPFVVKIHPNNPSLSNPSSGGLRIFAVAVDPQQELPK 60

Query: 66  KNPQRLLKELAERKRATSPKKKAPPRRYILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC 125
            NPQRLLKEL ERKRATSPKKK PPRR+ILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC
Sbjct: 61  NNPQRLLKELEERKRATSPKKKVPPRRFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC 120

Query: 126 LPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPCCERT 185
           LPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHP CERT
Sbjct: 121 LPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERT 180

Query: 186 KARHIRSGHSRLLFLGQYVIELALAEYFLLRYPREPPGPMRERVFALIGKRNLPKWIKAA 245
           KARHIRSGHSRLLFLGQYVIELALAEYFL RYPRE PGPMRERVFALIGKRNLP+WIKAA
Sbjct: 181 KARHIRSGHSRLLFLGQYVIELALAEYFLQRYPRESPGPMRERVFALIGKRNLPQWIKAA 240

Query: 246 SLQNLIFPYDDMDKMIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAEE 305
           SLQNLIFPYDDMDKM+RKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAEE
Sbjct: 241 SLQNLIFPYDDMDKMVRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAEE 300

Query: 306 CEPRLRRQLEDVDYVSVEFEDKKISWQDMVAYKPPEDALFAHPRLFRACVPPGMHRFRGN 365
           CEPRLRRQLEDVDYVSVEFEDKKISWQDMVAYKPPEDALFAHPRLFRACVPPGMHRFRGN
Sbjct: 301 CEPRLRRQLEDVDYVSVEFEDKKISWQDMVAYKPPEDALFAHPRLFRACVPPGMHRFRGN 360

Query: 366 IWDYDSRPQVMKALGYPIPVNDKIPDITEARNIELGLGLQLCFLHPSKHKFEHPRFCYER 425
           IWDYDSRPQVM+ALGYP+PV DKIP+ITEARNIELGLGLQLCFLHPSKHKFEHPRFCYER
Sbjct: 361 IWDYDSRPQVMQALGYPVPVTDKIPEITEARNIELGLGLQLCFLHPSKHKFEHPRFCYER 420

Query: 426 LEYVGQKIQDIVMAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKYLHKLIIYSEK 485
           LEY+GQKIQDIVMAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKYLHKLI+YSE+
Sbjct: 421 LEYLGQKIQDIVMAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKYLHKLIVYSEQ 480

Query: 486 VQDAYENNRRLRNPSTTAVQQALHGLSYAVYGKPDVRRLMFEVFDFEQIQPKEV 540
           VQDAYENNRRLRNP+TTAVQQALHGLSY VYGKPDVRRLMFEVFDFEQIQPK V
Sbjct: 481 VQDAYENNRRLRNPATTAVQQALHGLSYTVYGKPDVRRLMFEVFDFEQIQPKAV 534

[Close]

BLAST of Sed0014779 vs. ExPASy Swiss-Prot
Match: Q9SZV0 (Ribonuclease III domain-containing protein RNC1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RNC1 PE=2 SV=1)

HSP 1 Score: 890.6 bits (2300), Expect = 9.0e-258
Identity = 430/532 (80.83%), Postives = 473/532 (88.91%), Query Frame = 0


Query: 9   SSSFVQF-SSPNPNFSFSSSLTPFPLKTHINNPNSQNPTSRNLRIFAVAIDPQQESPKKN 68
           SSS ++  SS  P  SFSSS++ FP KT      S+    +NLRI A      Q  P+ +
Sbjct: 9   SSSLLRICSSSAPEISFSSSISQFPSKTQSILTKSR---FQNLRICASVTAETQGLPRDS 68

Query: 69  PQRLLKELAERKRATSPKKKAPPRRYILRPPLDDKKLAERFLNSPQLTLKSFPLLSSCLP 128
           PQRLLKELA+RK AT PKKK PP+R+ILRPPLDDKKLAERFLNSPQL+LKSFPLLSSCLP
Sbjct: 69  PQRLLKELAQRKTATGPKKKVPPKRFILRPPLDDKKLAERFLNSPQLSLKSFPLLSSCLP 128

Query: 129 SSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPCCERTKA 188
           SS+LNNADKTW+DEYLLE KQALGY LEPS+S GDDNPAK FDTLLYLAFQHP C+R +A
Sbjct: 129 SSKLNNADKTWIDEYLLEVKQALGYSLEPSESLGDDNPAKHFDTLLYLAFQHPSCDRARA 188

Query: 189 RHIRSGHSRLLFLGQYVIELALAEYFLLRYPREPPGPMRERVFALIGKRNLPKWIKAASL 248
           RH+++GHSRL FLGQYV+ELAL E+FL RYPRE PGPMRERVFALIGKR LPKWIKAASL
Sbjct: 189 RHVKNGHSRLWFLGQYVLELALTEFFLQRYPRESPGPMRERVFALIGKRYLPKWIKAASL 248

Query: 249 QNLIFPYDDMDKMIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAEECE 308
           QNLIFPYDDMDK+IRK+REPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDA+EC+
Sbjct: 249 QNLIFPYDDMDKLIRKEREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDADECQ 308

Query: 309 PRLRRQLEDVDYVSVEFEDKKISWQDMVAYKPPEDALFAHPRLFRACVPPGMHRFRGNIW 368
           PR RRQLEDVDYVSVEFE KK+ WQD+  YKPPEDALFAHPRLFRACVPPGMHRFRGNIW
Sbjct: 309 PRSRRQLEDVDYVSVEFEGKKLGWQDIATYKPPEDALFAHPRLFRACVPPGMHRFRGNIW 368

Query: 369 DYDSRPQVMKALGYPIPVNDKIPDITEARNIELGLGLQLCFLHPSKHKFEHPRFCYERLE 428
           D+DS+P+VM+ LGYP+ +ND+I +ITEARNIELGLGLQLCFLHPSKHKFEHPRFC+ERLE
Sbjct: 369 DFDSKPKVMQTLGYPLTMNDRIKEITEARNIELGLGLQLCFLHPSKHKFEHPRFCFERLE 428

Query: 429 YVGQKIQDIVMAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKYLHKLIIYSEKVQ 488
           YVGQKIQDI MAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREK LH  IIYSE+V 
Sbjct: 429 YVGQKIQDIAMAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKRLHNFIIYSEEVH 488

Query: 489 DAYENNRRLRNPSTTAVQQALHGLSYAVYGKPDVRRLMFEVFDFEQIQPKEV 540
           D YE+NRRLRNP+TTAVQQA+HGL+Y +YGKPDVRRLMFEVFDFEQIQPK V
Sbjct: 489 DRYEHNRRLRNPATTAVQQAIHGLAYTIYGKPDVRRLMFEVFDFEQIQPKAV 537

[Close]

BLAST of Sed0014779 vs. ExPASy Swiss-Prot
Match: Q8S1Z0 (Ribonuclease III domain-containing protein RNC1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=RNC1 PE=2 SV=1)

HSP 1 Score: 823.2 bits (2125), Expect = 1.8e-237
Identity = 397/536 (74.07%), Postives = 455/536 (84.89%), Query Frame = 0


Query: 20  PNFSFSS-SLTPFPLKTHINNPNSQNPTSRNLRIFAVAID------PQQESPKK---NPQ 79
           P  +F + +L P PL      P       R +R+ AVA D      P   SP +   +P 
Sbjct: 4   PAMAFQALALGPLPL------PLPAARRRRRVRVLAVAADHTPPPPPSPSSPPEPANSPS 63

Query: 80  RLLKELAERKRATSPKKKAPPRRYILRPPLDDKKLAERFLNSPQLTLKSFPLLSSCLPSS 139
           RLL+ELAERK+A SPKKK PPRR+IL+PPLDD++L +RFL+SPQL+LK+ PLLSSCLPS+
Sbjct: 64  RLLRELAERKKAVSPKKKHPPRRFILKPPLDDERLTQRFLSSPQLSLKALPLLSSCLPSA 123

Query: 140 RLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDN----PAKQFDTLLYLAFQH--PCCE 199
            L+ AD+TWMDEYLLEAKQALGYPL PS++ GD +    PA+ FD LLYLAFQH    CE
Sbjct: 124 PLSAADRTWMDEYLLEAKQALGYPLAPSETLGDGDDDGCPARHFDVLLYLAFQHLDTSCE 183

Query: 200 RTKARHIRSGHSRLLFLGQYVIELALAEYFLLRYPREPPGPMRERVFALIGKRNLPKWIK 259
           RT+ RH+RSGHSRL FLGQYV+ELA  E+FL RYPRE PGPMRERVFALIGKR +PKWIK
Sbjct: 184 RTRTRHVRSGHSRLWFLGQYVLELAFCEFFLQRYPRESPGPMRERVFALIGKRAIPKWIK 243

Query: 260 AASLQNLIFPYDDMDKMIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDA 319
           AASL NL+FPYDD+DKMIRKDREPP K+VFWALFGAIYLCFGMPEVYRVLFE FGMDP+ 
Sbjct: 244 AASLHNLVFPYDDLDKMIRKDREPPAKAVFWALFGAIYLCFGMPEVYRVLFEAFGMDPED 303

Query: 320 EECEPRLRRQLEDVDYVSVEFEDKKISWQDMVAYKPPEDALFAHPRLFRACVPPGMHRFR 379
           E C+P+LRRQLEDVDYVSVEFE ++++WQD+ AY+PP DALFAHPRLFRACVPPGMHRFR
Sbjct: 304 ESCQPKLRRQLEDVDYVSVEFEKRQLTWQDVAAYRPPPDALFAHPRLFRACVPPGMHRFR 363

Query: 380 GNIWDYDSRPQVMKALGYPIPVNDKIPDITEARNIELGLGLQLCFLHPSKHKFEHPRFCY 439
           GNIWD+D+RP+VM  LGYP+P+ND+IP+ITEARNIELGLGLQLCFLHPSKHKFEHPRFC 
Sbjct: 364 GNIWDFDNRPKVMNTLGYPLPMNDRIPEITEARNIELGLGLQLCFLHPSKHKFEHPRFCL 423

Query: 440 ERLEYVGQKIQDIVMAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKYLHKLIIYS 499
           ERLEYVGQKIQD+VMAERLLMKHLDAPG+WL EKHRRLLMNK+CGRYLR+K+LH  IIY 
Sbjct: 424 ERLEYVGQKIQDLVMAERLLMKHLDAPGRWLAEKHRRLLMNKYCGRYLRDKHLHHYIIYG 483

Query: 500 EKVQDAYENNRRLRNPSTTAVQQALHGLSYAVYGKPDVRRLMFEVFDFEQIQPKEV 540
           E VQD +E+NRRLRNPSTTAVQQA+HGL+Y VYGKPDVRRLMFEVFDFEQ+QPK V
Sbjct: 484 ESVQDRFEHNRRLRNPSTTAVQQAIHGLAYCVYGKPDVRRLMFEVFDFEQVQPKAV 533

[Close]

BLAST of Sed0014779 vs. ExPASy Swiss-Prot
Match: A6YSL1 (Ribonuclease III domain-containing protein RNC1, chloroplastic OS=Zea mays OX=4577 GN=RNC1 PE=1 SV=1)

HSP 1 Score: 822.8 bits (2124), Expect = 2.3e-237
Identity = 394/531 (74.20%), Postives = 453/531 (85.31%), Query Frame = 0


Query: 20  PNFSFSS-SLTPFPLKTHINNPNSQNPTSRNLRIFAVAID------PQQESPKKNPQRLL 79
           P  +F + +LTP P   H         +SR +R+ AVA D      P  E P  +P RLL
Sbjct: 4   PAMAFQALTLTPLPFSLH--------SSSRRVRVLAVAADQTPPPAPPSE-PANSPSRLL 63

Query: 80  KELAERKRATSPKKKAPPRRYILRPPLDDKKLAERFLNSPQLTLKSFPLLSSCLPSSRLN 139
           +ELA+RK+A SPKKK PPRR+IL+PPLDD++L  RFL+SPQL+LK+ PLLSSCLPS+ L+
Sbjct: 64  RELAQRKKAVSPKKKHPPRRFILKPPLDDERLTRRFLSSPQLSLKALPLLSSCLPSAPLS 123

Query: 140 NADKTWMDEYLLEAKQALGYPLEPSDSY--GDDNPAKQFDTLLYLAFQH--PCCERTKAR 199
            AD+TWMDEYLLEAKQALGYPL PS++   GDD PA+ FD L YLAFQH  P  ERT+ R
Sbjct: 124 TADRTWMDEYLLEAKQALGYPLAPSETLGEGDDCPARHFDVLFYLAFQHLDPSSERTRMR 183

Query: 200 HIRSGHSRLLFLGQYVIELALAEYFLLRYPREPPGPMRERVFALIGKRNLPKWIKAASLQ 259
           H+R+GHSRL FLGQYV+ELA  E+FL RYPRE PGPMRERVFALIGK+ LP+W+KAASL 
Sbjct: 184 HVRNGHSRLWFLGQYVLELAFCEFFLQRYPRESPGPMRERVFALIGKKVLPRWLKAASLH 243

Query: 260 NLIFPYDDMDKMIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAEECEP 319
           NL+FPYDD+DKMIRKDREPP K+VFWA+FGAIYLCFGMPEVYRVLFE FGMDPD E C+P
Sbjct: 244 NLVFPYDDLDKMIRKDREPPSKAVFWAIFGAIYLCFGMPEVYRVLFEAFGMDPDDESCQP 303

Query: 320 RLRRQLEDVDYVSVEFEDKKISWQDMVAYKPPEDALFAHPRLFRACVPPGMHRFRGNIWD 379
           +LRRQLEDVDYVSVEFE ++++WQD+ AY+PP DALFAHPRLFRACVPPGMHRFRGNIWD
Sbjct: 304 KLRRQLEDVDYVSVEFEKRQLTWQDVAAYRPPPDALFAHPRLFRACVPPGMHRFRGNIWD 363

Query: 380 YDSRPQVMKALGYPIPVNDKIPDITEARNIELGLGLQLCFLHPSKHKFEHPRFCYERLEY 439
           +DSRP+VM  LGYP+P+ND+IP+ITEARNIELGLGLQLCFLHPSKHKFEHPRFCYERLEY
Sbjct: 364 FDSRPKVMTTLGYPLPMNDRIPEITEARNIELGLGLQLCFLHPSKHKFEHPRFCYERLEY 423

Query: 440 VGQKIQDIVMAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKYLHKLIIYSEKVQD 499
           VGQKIQD+VMAERLLMKHLDAPG+WL EKHRR LMNK+CGRYLR+K+L   IIY E VQD
Sbjct: 424 VGQKIQDLVMAERLLMKHLDAPGRWLAEKHRRTLMNKYCGRYLRDKHLQHYIIYGETVQD 483

Query: 500 AYENNRRLRNPSTTAVQQALHGLSYAVYGKPDVRRLMFEVFDFEQIQPKEV 540
            +E+NRRLRNPSTT+VQQALHGL+Y VYGKPDVRRLMFEVFDFEQ+QPK V
Sbjct: 484 RFEHNRRLRNPSTTSVQQALHGLAYCVYGKPDVRRLMFEVFDFEQVQPKAV 525

[Close]

BLAST of Sed0014779 vs. ExPASy Swiss-Prot
Match: Q5L0Q3 (Ribonuclease 3 OS=Geobacillus kaustophilus (strain HTA426) OX=235909 GN=rnc PE=3 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 2.0e-07
Identity = 36/124 (29.03%), Postives = 57/124 (45.97%), Query Frame = 0


Query: 170 DTLLYLAFQHPCCERTKARHIRSGHSRLLFLGQYVIELALAEYFLLRYPREPPGPMRERV 229
           + LL  AF H        R +   + RL FLG  V+EL +++Y   ++P    G + +  
Sbjct: 32  EKLLIQAFTHSSYVNEHRRRLHEDNERLEFLGDAVLELTVSQYLFQKFPHMSEGQLTKLR 91

Query: 230 FALIGKRNLPKWIKAASLQNLIFPYDDMDKMIRKDREPPVKSVFWALFGAIYLCFGMPEV 289
            A++ + +L K+  A S   L+      +    + R   +  VF A  GA+YL  GM  V
Sbjct: 92  AAIVCEPSLVKFANALSFGELVLLGKGEELTGGRTRPALLADVFEAFIGALYLDQGMDAV 151

Query: 290 YRVL 294
            R L
Sbjct: 152 IRFL 155

[Close]

BLAST of Sed0014779 vs. ExPASy Swiss-Prot
Match: A4IM67 (Ribonuclease 3 OS=Geobacillus thermodenitrificans (strain NG80-2) OX=420246 GN=rnc PE=3 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 2.6e-07
Identity = 37/126 (29.37%), Postives = 57/126 (45.24%), Query Frame = 0


Query: 168 QFDTLLYLAFQHPCCERTKARHIRSGHSRLLFLGQYVIELALAEYFLLRYPREPPGPMRE 227
           Q + LL  AF H        R     + RL FLG  V+EL +++Y   ++P    G + +
Sbjct: 30  QNEKLLIQAFTHSSYVNEHRRRFHEDNERLEFLGDAVLELTVSQYLFQKFPHMSEGQLTK 89

Query: 228 RVFALIGKRNLPKWIKAASLQNLIFPYDDMDKMIRKDREPPVKSVFWALFGAIYLCFGMP 287
              A++ + +L K+  A S   L+      +    + R   +  VF A  GA+YL  GM 
Sbjct: 90  LRAAIVCEPSLVKFANALSFGELVLLGKGEELTGGRTRPALLADVFEAFIGALYLDQGMD 149

Query: 288 EVYRVL 294
            V R L
Sbjct: 150 VVLRFL 155

[Close]

BLAST of Sed0014779 vs. ExPASy TrEMBL
Match: A0A6J1BVK6 (ribonuclease III domain-containing protein RNC1, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111005910 PE=4 SV=1)

HSP 1 Score: 1040.0 bits (2688), Expect = 3.4e-300
Identity = 503/534 (94.19%), Postives = 518/534 (97.00%), Query Frame = 0


Query: 6   MELSSSFVQFSSPNPNFSFSSSLTPFPLKTHINNPNSQNPTSRNLRIFAVAIDPQQESPK 65
           MELSSSFVQ +SP PN+SFSSSLTPF  K + NNP+  NPTS NLRIFAVA+DPQQE PK
Sbjct: 1   MELSSSFVQLASPTPNYSFSSSLTPFHFKIYPNNPSFPNPTSGNLRIFAVAVDPQQELPK 60

Query: 66  KNPQRLLKELAERKRATSPKKKAPPRRYILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC 125
            NPQRLLKELAERKRATSPKK+ PPRR+ILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC
Sbjct: 61  NNPQRLLKELAERKRATSPKKRVPPRRFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC 120

Query: 126 LPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPCCERT 185
           LPSSRLNNADKTWMDEYLLEAKQALGYPLEPSD+YGDDNPAKQFDTLLYLAFQHP CERT
Sbjct: 121 LPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDNYGDDNPAKQFDTLLYLAFQHPSCERT 180

Query: 186 KARHIRSGHSRLLFLGQYVIELALAEYFLLRYPREPPGPMRERVFALIGKRNLPKWIKAA 245
           KARHIRSGHSRLLFLGQYV+ELALAEYFL RYPRE PGPMRERVFALIGKR+LPKWIKAA
Sbjct: 181 KARHIRSGHSRLLFLGQYVLELALAEYFLQRYPRESPGPMRERVFALIGKRSLPKWIKAA 240

Query: 246 SLQNLIFPYDDMDKMIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAEE 305
           SLQNLIFPYDDMDKMIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAEE
Sbjct: 241 SLQNLIFPYDDMDKMIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAEE 300

Query: 306 CEPRLRRQLEDVDYVSVEFEDKKISWQDMVAYKPPEDALFAHPRLFRACVPPGMHRFRGN 365
           CEPRLRRQLEDVDYVSVEFEDKKISWQDMVAYKPPEDALFAHPRLFRACVPPGMHRFRGN
Sbjct: 301 CEPRLRRQLEDVDYVSVEFEDKKISWQDMVAYKPPEDALFAHPRLFRACVPPGMHRFRGN 360

Query: 366 IWDYDSRPQVMKALGYPIPVNDKIPDITEARNIELGLGLQLCFLHPSKHKFEHPRFCYER 425
           IWDYDSRPQVM+ALGYP+PV+DKIPDITEARNIELGLGLQLCFLHPSKHKFEHPRFCYER
Sbjct: 361 IWDYDSRPQVMQALGYPVPVSDKIPDITEARNIELGLGLQLCFLHPSKHKFEHPRFCYER 420

Query: 426 LEYVGQKIQDIVMAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKYLHKLIIYSEK 485
           LEY+GQKIQDIVMAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKYLHKLIIYSEK
Sbjct: 421 LEYLGQKIQDIVMAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKYLHKLIIYSEK 480

Query: 486 VQDAYENNRRLRNPSTTAVQQALHGLSYAVYGKPDVRRLMFEVFDFEQIQPKEV 540
           VQDAYENNRRLRNP+TTAVQQALHGLSYAVYGKPDVRRLMFEVFDFEQIQPK V
Sbjct: 481 VQDAYENNRRLRNPATTAVQQALHGLSYAVYGKPDVRRLMFEVFDFEQIQPKAV 534

[Close]

BLAST of Sed0014779 vs. ExPASy TrEMBL
Match: A0A1S3B1J9 (ribonuclease III domain-containing protein RNC1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103484834 PE=4 SV=1)

HSP 1 Score: 1037.3 bits (2681), Expect = 2.2e-299
Identity = 502/534 (94.01%), Postives = 518/534 (97.00%), Query Frame = 0


Query: 6   MELSSSFVQFSSPNPNFSFSSSLTPFPLKTHINNPNSQNPTSRNLRIFAVAIDPQQESPK 65
           MELSSSFV+ SSP+PN+SFSSSLTPF +K H N+P   NP+S NLRIFAVA+DPQQE PK
Sbjct: 1   MELSSSFVKLSSPSPNYSFSSSLTPFIVKIHPNHPIFPNPSSGNLRIFAVAVDPQQELPK 60

Query: 66  KNPQRLLKELAERKRATSPKKKAPPRRYILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC 125
            NPQRLLKELAERKRATSPKKK PPRR+ILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC
Sbjct: 61  NNPQRLLKELAERKRATSPKKKVPPRRFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC 120

Query: 126 LPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPCCERT 185
           LPSSRLNNADKTWMDEYLLEAKQALGYPL+PSDSYGDDNPAKQFDTLLYLAFQHP CERT
Sbjct: 121 LPSSRLNNADKTWMDEYLLEAKQALGYPLDPSDSYGDDNPAKQFDTLLYLAFQHPSCERT 180

Query: 186 KARHIRSGHSRLLFLGQYVIELALAEYFLLRYPREPPGPMRERVFALIGKRNLPKWIKAA 245
           KARHIRSGHSRLLFLGQYVIELALAEYFLLRYPRE PGPMRERVFALIGKRNLPKWIKAA
Sbjct: 181 KARHIRSGHSRLLFLGQYVIELALAEYFLLRYPRESPGPMRERVFALIGKRNLPKWIKAA 240

Query: 246 SLQNLIFPYDDMDKMIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAEE 305
           SLQNLIFPYDDMDKMIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAEE
Sbjct: 241 SLQNLIFPYDDMDKMIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAEE 300

Query: 306 CEPRLRRQLEDVDYVSVEFEDKKISWQDMVAYKPPEDALFAHPRLFRACVPPGMHRFRGN 365
           CEPRLRRQLEDVDYVSVEFEDK+ISWQDM++YKPPEDALFAHPRLFRACVPPGMHRFRGN
Sbjct: 301 CEPRLRRQLEDVDYVSVEFEDKRISWQDMISYKPPEDALFAHPRLFRACVPPGMHRFRGN 360

Query: 366 IWDYDSRPQVMKALGYPIPVNDKIPDITEARNIELGLGLQLCFLHPSKHKFEHPRFCYER 425
           IWDYDSRPQVM+ALGYP+PV DKIPDITEARNIELGLGLQLCFLHPSKHKFEHPRFCYER
Sbjct: 361 IWDYDSRPQVMQALGYPLPVVDKIPDITEARNIELGLGLQLCFLHPSKHKFEHPRFCYER 420

Query: 426 LEYVGQKIQDIVMAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKYLHKLIIYSEK 485
           LEY+GQKIQDIVMAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKYLHKLIIYSEK
Sbjct: 421 LEYLGQKIQDIVMAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKYLHKLIIYSEK 480

Query: 486 VQDAYENNRRLRNPSTTAVQQALHGLSYAVYGKPDVRRLMFEVFDFEQIQPKEV 540
           VQDAYENNRRLRNP+TTAVQQALHGLSY VYGKPDVRRLMFEVFDFEQIQPK V
Sbjct: 481 VQDAYENNRRLRNPATTAVQQALHGLSYVVYGKPDVRRLMFEVFDFEQIQPKAV 534

[Close]

BLAST of Sed0014779 vs. ExPASy TrEMBL
Match: A0A6J1GEC3 (ribonuclease III domain-containing protein RNC1, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111453180 PE=4 SV=1)

HSP 1 Score: 1033.9 bits (2672), Expect = 2.4e-298
Identity = 499/534 (93.45%), Postives = 514/534 (96.25%), Query Frame = 0


Query: 6   MELSSSFVQFSSPNPNFSFSSSLTPFPLKTHINNPNSQNPTSRNLRIFAVAIDPQQESPK 65
           MELSS FV+ SSP PNFSFSSSLTPF +K H NNP+  NP+S  LRIFAVA+DPQQE PK
Sbjct: 1   MELSSCFVKLSSPTPNFSFSSSLTPFVVKIHPNNPSLSNPSSGGLRIFAVAVDPQQELPK 60

Query: 66  KNPQRLLKELAERKRATSPKKKAPPRRYILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC 125
            NPQRLLKEL ERKRATSPKKK PPRR+ILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC
Sbjct: 61  NNPQRLLKELEERKRATSPKKKVPPRRFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC 120

Query: 126 LPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPCCERT 185
           LPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHP CERT
Sbjct: 121 LPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERT 180

Query: 186 KARHIRSGHSRLLFLGQYVIELALAEYFLLRYPREPPGPMRERVFALIGKRNLPKWIKAA 245
           KARHIRSGHSRLLFLGQYVIELALAEYFL RYPRE PGPMRERVFALIGKRNLP+WIKAA
Sbjct: 181 KARHIRSGHSRLLFLGQYVIELALAEYFLQRYPRESPGPMRERVFALIGKRNLPQWIKAA 240

Query: 246 SLQNLIFPYDDMDKMIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAEE 305
           SLQNLIFPYDDMDKM+RKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAEE
Sbjct: 241 SLQNLIFPYDDMDKMVRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAEE 300

Query: 306 CEPRLRRQLEDVDYVSVEFEDKKISWQDMVAYKPPEDALFAHPRLFRACVPPGMHRFRGN 365
           CEPRLRRQLEDVDYVSVEFEDKKISWQDMVAYKPPEDALFAHPRLFRACVPPGMHRFRGN
Sbjct: 301 CEPRLRRQLEDVDYVSVEFEDKKISWQDMVAYKPPEDALFAHPRLFRACVPPGMHRFRGN 360

Query: 366 IWDYDSRPQVMKALGYPIPVNDKIPDITEARNIELGLGLQLCFLHPSKHKFEHPRFCYER 425
           IWDYDSRPQVM+ALGYP+PV DKIP+ITEARNIELGLGLQLCFLHPSKHKFEHPRFCYER
Sbjct: 361 IWDYDSRPQVMQALGYPVPVTDKIPEITEARNIELGLGLQLCFLHPSKHKFEHPRFCYER 420

Query: 426 LEYVGQKIQDIVMAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKYLHKLIIYSEK 485
           LEY+GQKIQDIVMAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKYLHKLI+YSE+
Sbjct: 421 LEYLGQKIQDIVMAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKYLHKLIVYSEQ 480

Query: 486 VQDAYENNRRLRNPSTTAVQQALHGLSYAVYGKPDVRRLMFEVFDFEQIQPKEV 540
           VQDAYENNRRLRNP+TTAVQQALHGLSY VYGKPDVRRLMFEVFDFEQIQPK V
Sbjct: 481 VQDAYENNRRLRNPATTAVQQALHGLSYTVYGKPDVRRLMFEVFDFEQIQPKAV 534

[Close]

BLAST of Sed0014779 vs. ExPASy TrEMBL
Match: A0A6J1IRK8 (ribonuclease III domain-containing protein RNC1, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111477828 PE=4 SV=1)

HSP 1 Score: 1027.7 bits (2656), Expect = 1.7e-296
Identity = 495/534 (92.70%), Postives = 514/534 (96.25%), Query Frame = 0


Query: 6   MELSSSFVQFSSPNPNFSFSSSLTPFPLKTHINNPNSQNPTSRNLRIFAVAIDPQQESPK 65
           MELSS FV+ SSP PNFSFSSSLTPF +K H NNP+  NP+S +LRIFAVA+DP+QE PK
Sbjct: 1   MELSSCFVKLSSPTPNFSFSSSLTPFVVKIHPNNPSLSNPSSGSLRIFAVAVDPRQELPK 60

Query: 66  KNPQRLLKELAERKRATSPKKKAPPRRYILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC 125
            NPQRLLKEL ERKRATSPKKK PPRR+ILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC
Sbjct: 61  NNPQRLLKELEERKRATSPKKKVPPRRFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC 120

Query: 126 LPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPCCERT 185
           LPSSRLNNADKTWM+EYLLEAKQALGYPLEP DSYGDDNPAKQFDTLLYLAFQHP CERT
Sbjct: 121 LPSSRLNNADKTWMEEYLLEAKQALGYPLEPFDSYGDDNPAKQFDTLLYLAFQHPSCERT 180

Query: 186 KARHIRSGHSRLLFLGQYVIELALAEYFLLRYPREPPGPMRERVFALIGKRNLPKWIKAA 245
           KARHIRSGHSRLLFLGQYVIELALAEYFL RYPRE PGPMRERVFALIGKRNLP+WIKAA
Sbjct: 181 KARHIRSGHSRLLFLGQYVIELALAEYFLQRYPRESPGPMRERVFALIGKRNLPQWIKAA 240

Query: 246 SLQNLIFPYDDMDKMIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAEE 305
           SLQNLIFPYDDMDKM+RKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAEE
Sbjct: 241 SLQNLIFPYDDMDKMVRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAEE 300

Query: 306 CEPRLRRQLEDVDYVSVEFEDKKISWQDMVAYKPPEDALFAHPRLFRACVPPGMHRFRGN 365
           CEPRLRRQLEDVDYVSVEFEDKKISWQDMVAYKPPEDALFAHPRLFRACVPPGMHRFRGN
Sbjct: 301 CEPRLRRQLEDVDYVSVEFEDKKISWQDMVAYKPPEDALFAHPRLFRACVPPGMHRFRGN 360

Query: 366 IWDYDSRPQVMKALGYPIPVNDKIPDITEARNIELGLGLQLCFLHPSKHKFEHPRFCYER 425
           IWDYDSRPQVM+ALGYP+PV DKIP+ITEARNIELGLGLQLCFLHPSKHKFEHPRFCYER
Sbjct: 361 IWDYDSRPQVMQALGYPVPVTDKIPEITEARNIELGLGLQLCFLHPSKHKFEHPRFCYER 420

Query: 426 LEYVGQKIQDIVMAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKYLHKLIIYSEK 485
           LEY+GQKIQDIVMAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKYLHKLI+YSE+
Sbjct: 421 LEYLGQKIQDIVMAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKYLHKLIVYSEQ 480

Query: 486 VQDAYENNRRLRNPSTTAVQQALHGLSYAVYGKPDVRRLMFEVFDFEQIQPKEV 540
           VQDAYENNRRLRNP+TTAVQQ+LHGLSY VYGKPDVRRLMFEVFDFEQIQPK V
Sbjct: 481 VQDAYENNRRLRNPATTAVQQSLHGLSYTVYGKPDVRRLMFEVFDFEQIQPKAV 534

[Close]

BLAST of Sed0014779 vs. ExPASy TrEMBL
Match: A0A6J1KSH3 (LOW QUALITY PROTEIN: ribonuclease III domain-containing protein RNC1, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111497202 PE=4 SV=1)

HSP 1 Score: 1019.6 bits (2635), Expect = 4.7e-294
Identity = 494/534 (92.51%), Postives = 514/534 (96.25%), Query Frame = 0


Query: 6   MELSSSFVQFSSPNPNFSFSSSLTPFPLKTHINNPNSQNPTSRNLRIFAVAIDPQQESPK 65
           MELSSSFV+FSS + N+SFSSS TPF +K H N+PN  NPTS +LRIFAVA+DPQQE PK
Sbjct: 1   MELSSSFVKFSS-STNYSFSSSFTPFIVKLHPNSPNFPNPTSGDLRIFAVAVDPQQELPK 60

Query: 66  KNPQRLLKELAERKRATSPKKKAPPRRYILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC 125
            NPQRLLKELAERKRATSPKKK PPRRYILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC
Sbjct: 61  NNPQRLLKELAERKRATSPKKKVPPRRYILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC 120

Query: 126 LPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPCCERT 185
           LPSSRLNNA KTW DEYLLEAKQALGYPLEPSDSYG+DNPAKQFDTLLYLAFQHP CERT
Sbjct: 121 LPSSRLNNAXKTWTDEYLLEAKQALGYPLEPSDSYGNDNPAKQFDTLLYLAFQHPSCERT 180

Query: 186 KARHIRSGHSRLLFLGQYVIELALAEYFLLRYPREPPGPMRERVFALIGKRNLPKWIKAA 245
           KARHIRSGHSRLLFLGQYV+ELALAEYFL RYPRE PGPMRERVFALIGKRNLPKWIKAA
Sbjct: 181 KARHIRSGHSRLLFLGQYVLELALAEYFLQRYPRESPGPMRERVFALIGKRNLPKWIKAA 240

Query: 246 SLQNLIFPYDDMDKMIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAEE 305
           SLQNLIFPYDDMDKMIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPD+EE
Sbjct: 241 SLQNLIFPYDDMDKMIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDSEE 300

Query: 306 CEPRLRRQLEDVDYVSVEFEDKKISWQDMVAYKPPEDALFAHPRLFRACVPPGMHRFRGN 365
           CEPRLRRQLEDVDYVSVEFEDKKISWQDM+AYKPPEDALFAHPRLFRACVPPGMHRFRGN
Sbjct: 301 CEPRLRRQLEDVDYVSVEFEDKKISWQDMIAYKPPEDALFAHPRLFRACVPPGMHRFRGN 360

Query: 366 IWDYDSRPQVMKALGYPIPVNDKIPDITEARNIELGLGLQLCFLHPSKHKFEHPRFCYER 425
           IWDYDS+PQVMKALGYP+PV DKIPDITEARNIELGLGLQLCFLHPSK KFEHPRFCYER
Sbjct: 361 IWDYDSQPQVMKALGYPVPVTDKIPDITEARNIELGLGLQLCFLHPSKFKFEHPRFCYER 420

Query: 426 LEYVGQKIQDIVMAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKYLHKLIIYSEK 485
           LEY+GQKIQDIVMAERLLMKHLDAPGKWLQEKHRRL+MNKFCGRYLREKYLHKLI+YSE+
Sbjct: 421 LEYLGQKIQDIVMAERLLMKHLDAPGKWLQEKHRRLVMNKFCGRYLREKYLHKLIVYSEQ 480

Query: 486 VQDAYENNRRLRNPSTTAVQQALHGLSYAVYGKPDVRRLMFEVFDFEQIQPKEV 540
           V+DAYENNRRLRNP+TTAVQQALHGLSYAVYGKPDVRRLMFEVFDFEQ+QPK V
Sbjct: 481 VEDAYENNRRLRNPATTAVQQALHGLSYAVYGKPDVRRLMFEVFDFEQLQPKAV 533

[Close]

BLAST of Sed0014779 vs. TAIR 10
Match: AT4G37510.1 (Ribonuclease III family protein )

HSP 1 Score: 890.6 bits (2300), Expect = 6.4e-259
Identity = 430/532 (80.83%), Postives = 473/532 (88.91%), Query Frame = 0


Query: 9   SSSFVQF-SSPNPNFSFSSSLTPFPLKTHINNPNSQNPTSRNLRIFAVAIDPQQESPKKN 68
           SSS ++  SS  P  SFSSS++ FP KT      S+    +NLRI A      Q  P+ +
Sbjct: 9   SSSLLRICSSSAPEISFSSSISQFPSKTQSILTKSR---FQNLRICASVTAETQGLPRDS 68

Query: 69  PQRLLKELAERKRATSPKKKAPPRRYILRPPLDDKKLAERFLNSPQLTLKSFPLLSSCLP 128
           PQRLLKELA+RK AT PKKK PP+R+ILRPPLDDKKLAERFLNSPQL+LKSFPLLSSCLP
Sbjct: 69  PQRLLKELAQRKTATGPKKKVPPKRFILRPPLDDKKLAERFLNSPQLSLKSFPLLSSCLP 128

Query: 129 SSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPCCERTKA 188
           SS+LNNADKTW+DEYLLE KQALGY LEPS+S GDDNPAK FDTLLYLAFQHP C+R +A
Sbjct: 129 SSKLNNADKTWIDEYLLEVKQALGYSLEPSESLGDDNPAKHFDTLLYLAFQHPSCDRARA 188

Query: 189 RHIRSGHSRLLFLGQYVIELALAEYFLLRYPREPPGPMRERVFALIGKRNLPKWIKAASL 248
           RH+++GHSRL FLGQYV+ELAL E+FL RYPRE PGPMRERVFALIGKR LPKWIKAASL
Sbjct: 189 RHVKNGHSRLWFLGQYVLELALTEFFLQRYPRESPGPMRERVFALIGKRYLPKWIKAASL 248

Query: 249 QNLIFPYDDMDKMIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAEECE 308
           QNLIFPYDDMDK+IRK+REPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDA+EC+
Sbjct: 249 QNLIFPYDDMDKLIRKEREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDADECQ 308

Query: 309 PRLRRQLEDVDYVSVEFEDKKISWQDMVAYKPPEDALFAHPRLFRACVPPGMHRFRGNIW 368
           PR RRQLEDVDYVSVEFE KK+ WQD+  YKPPEDALFAHPRLFRACVPPGMHRFRGNIW
Sbjct: 309 PRSRRQLEDVDYVSVEFEGKKLGWQDIATYKPPEDALFAHPRLFRACVPPGMHRFRGNIW 368

Query: 369 DYDSRPQVMKALGYPIPVNDKIPDITEARNIELGLGLQLCFLHPSKHKFEHPRFCYERLE 428
           D+DS+P+VM+ LGYP+ +ND+I +ITEARNIELGLGLQLCFLHPSKHKFEHPRFC+ERLE
Sbjct: 369 DFDSKPKVMQTLGYPLTMNDRIKEITEARNIELGLGLQLCFLHPSKHKFEHPRFCFERLE 428

Query: 429 YVGQKIQDIVMAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKYLHKLIIYSEKVQ 488
           YVGQKIQDI MAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREK LH  IIYSE+V 
Sbjct: 429 YVGQKIQDIAMAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKRLHNFIIYSEEVH 488

Query: 489 DAYENNRRLRNPSTTAVQQALHGLSYAVYGKPDVRRLMFEVFDFEQIQPKEV 540
           D YE+NRRLRNP+TTAVQQA+HGL+Y +YGKPDVRRLMFEVFDFEQIQPK V
Sbjct: 489 DRYEHNRRLRNPATTAVQQAIHGLAYTIYGKPDVRRLMFEVFDFEQIQPKAV 537

[Close]

BLAST of Sed0014779 vs. TAIR 10
Match: AT2G48121.2 (LOCATED IN: mitochondrion; BEST Arabidopsis thaliana protein match is: Ribonuclease III family protein (TAIR:AT4G37510.1). )

HSP 1 Score: 137.5 bits (345), Expect = 3.2e-32
Identity = 64/77 (83.12%), Postives = 70/77 (90.91%), Query Frame = 0


Query: 463 MNKFCGRYLREKYLHKLIIYSEKVQDAYENNRRLRNPSTTAVQQALHGLSYAVYGKPDVR 522
           MNKFCGRYLREK LH  IIYSE+V D YE+NRRLRNP+TTAVQQA+HGL+Y +YGKPDVR
Sbjct: 1   MNKFCGRYLREKRLHNFIIYSEEVHDRYEHNRRLRNPATTAVQQAIHGLAYTIYGKPDVR 60

Query: 523 RLMFEVFDFEQIQPKEV 540
           RLMFEVFDFEQIQPK V
Sbjct: 61  RLMFEVFDFEQIQPKAV 77

[Close]

BLAST of Sed0014779 vs. TAIR 10
Match: AT2G48121.1 (BEST Arabidopsis thaliana protein match is: Ribonuclease III family protein (TAIR:AT4G37510.1). )

HSP 1 Score: 101.7 bits (252), Expect = 1.9e-21
Identity = 46/57 (80.70%), Postives = 53/57 (92.98%), Query Frame = 0


Query: 483 SEKVQDAYENNRRLRNPSTTAVQQALHGLSYAVYGKPDVRRLMFEVFDFEQIQPKEV 540
           +E+V D YE+NRRLRNP+TTAVQQA+HGL+Y +YGKPDVRRLMFEVFDFEQIQPK V
Sbjct: 19  TEEVHDRYEHNRRLRNPATTAVQQAIHGLAYTIYGKPDVRRLMFEVFDFEQIQPKAV 75

The following BLAST results are available for this feature:

BLAST of Sed0014779 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022133289.1	7.0e-300	94.19	ribonuclease III domain-containing protein RNC1, chloroplastic [Momordica charan...	[more]
XP_008440359.1	4.5e-299	94.01	PREDICTED: ribonuclease III domain-containing protein RNC1, chloroplastic [Cucum...	[more]
XP_038883471.1	5.9e-299	94.01	ribonuclease III domain-containing protein RNC1, chloroplastic [Benincasa hispid...	[more]
XP_023543359.1	3.8e-298	93.45	ribonuclease III domain-containing protein RNC1, chloroplastic-like [Cucurbita p...	[more]
XP_022949934.1	5.0e-298	93.45	ribonuclease III domain-containing protein RNC1, chloroplastic-like [Cucurbita m...	[more]

BLAST of Sed0014779 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SZV0	9.0e-258	80.83	Ribonuclease III domain-containing protein RNC1, chloroplastic OS=Arabidopsis th...	[more]
Q8S1Z0	1.8e-237	74.07	Ribonuclease III domain-containing protein RNC1, chloroplastic OS=Oryza sativa s...	[more]
A6YSL1	2.3e-237	74.20	Ribonuclease III domain-containing protein RNC1, chloroplastic OS=Zea mays OX=45...	[more]
Q5L0Q3	2.0e-07	29.03	Ribonuclease 3 OS=Geobacillus kaustophilus (strain HTA426) OX=235909 GN=rnc PE=3...	[more]
A4IM67	2.6e-07	29.37	Ribonuclease 3 OS=Geobacillus thermodenitrificans (strain NG80-2) OX=420246 GN=r...	[more]

BLAST of Sed0014779 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BVK6	3.4e-300	94.19	ribonuclease III domain-containing protein RNC1, chloroplastic OS=Momordica char...	[more]
A0A1S3B1J9	2.2e-299	94.01	ribonuclease III domain-containing protein RNC1, chloroplastic OS=Cucumis melo O...	[more]
A0A6J1GEC3	2.4e-298	93.45	ribonuclease III domain-containing protein RNC1, chloroplastic-like OS=Cucurbita...	[more]
A0A6J1IRK8	1.7e-296	92.70	ribonuclease III domain-containing protein RNC1, chloroplastic-like OS=Cucurbita...	[more]
A0A6J1KSH3	4.7e-294	92.51	LOW QUALITY PROTEIN: ribonuclease III domain-containing protein RNC1, chloroplas...	[more]

BLAST of Sed0014779 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G37510.1	6.4e-259	80.83	Ribonuclease III family protein	[more]
AT2G48121.2	3.2e-32	83.12	LOCATED IN: mitochondrion; BEST Arabidopsis thaliana protein match is: Ribonucle...	[more]
AT2G48121.1	1.9e-21	80.70	BEST Arabidopsis thaliana protein match is: Ribonuclease III family protein (TAI...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000999	Ribonuclease III domain	SMART	SM00535	riboneu5	coord: 171..308 e-value: 2.2E-23 score: 93.7
IPR000999	Ribonuclease III domain	PROSITE	PS50142	RNASE_3_2	coord: 172..285 score: 13.810539
IPR000999	Ribonuclease III domain	CDD	cd00593	RIBOc	coord: 171..302 e-value: 4.77756E-27 score: 104.232
IPR000999	Ribonuclease III domain	CDD	cd00593	RIBOc	coord: 404..529 e-value: 1.84963E-19 score: 82.6606
IPR036389	Ribonuclease III, endonuclease domain superfamily	GENE3D	1.10.1520.10	Ribonuclease III domain	coord: 396..532 e-value: 2.5E-10 score: 42.1 coord: 168..299 e-value: 5.7E-13 score: 50.7
IPR036389	Ribonuclease III, endonuclease domain superfamily	SUPERFAMILY	69065	RNase III domain-like	coord: 400..530
IPR036389	Ribonuclease III, endonuclease domain superfamily	SUPERFAMILY	69065	RNase III domain-like	coord: 137..298
IPR011907	Ribonuclease III	PANTHER	PTHR11207	RIBONUCLEASE III	coord: 6..536
None	No IPR available	PANTHER	PTHR11207:SF21	RIBONUCLEASE III DOMAIN-CONTAINING PROTEIN RNC1, CHLOROPLASTIC	coord: 6..536

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0014779.1	Sed0014779.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010468	regulation of gene expression
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
biological_process	GO:0006396	RNA processing
biological_process	GO:0016075	rRNA catabolic process
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003725	double-stranded RNA binding
molecular_function	GO:0004525	ribonuclease III activity
molecular_function	GO:0003723	RNA binding