Sed0014742 (gene) Chayote v1

Overview


Name	Sed0014742
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Reverse transcriptase domain-containing protein
Location	LG11: 20507040 .. 20507519 (+)
RNA-Seq Expression	Sed0014742
Synteny	Sed0014742

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAAAGCAAGAAGTCGAAAAAGTTGAAGGTGGTCAGATGAACGTGATTCTACCTAAAAGTAGAACAAAAGATGGATTCGATCCAAATGCGTATAAACTCTTAGCAAAGGCAGGTTATGACTTTACGACTCACAATGAGTTTAAGGGTCTAAGCATCCTTGACGACAAACCTGAGCTTTCATCAACACAGAAGAAACTTGCGAATAAGGGTCATCAATTACTTGCATCACGAAATGGTCTTGGATATAAGCCGCTAGAGCCAGTTCAAATAACGAGAAAATGGAAGTTGAAAGTTGCAGATACAAATCACATAACAATTGATGAATGTGAAGATTCAAAAGGAGTGAAAAATGTCAATCAAAGGTTACCTGCACTCAGACGCATCAGACCACCAATTTCTCGAGTTTCAGCCCTTGAAAGATTGAACAAACCAAAAGAAAAGGTAGAAGACACAACCTCAACTTCATATGTGACATGA

mRNA sequence

ATGACAAAGCAAGAAGTCGAAAAAGTTGAAGGTGGTCAGATGAACGTGATTCTACCTAAAAGTAGAACAAAAGATGGATTCGATCCAAATGCGTATAAACTCTTAGCAAAGGCAGGTTATGACTTTACGACTCACAATGAGTTTAAGGGTCTAAGCATCCTTGACGACAAACCTGAGCTTTCATCAACACAGAAGAAACTTGCGAATAAGGGTCATCAATTACTTGCATCACGAAATGGTCTTGGATATAAGCCGCTAGAGCCAGTTCAAATAACGAGAAAATGGAAGTTGAAAGTTGCAGATACAAATCACATAACAATTGATGAATGTGAAGATTCAAAAGGAGTGAAAAATGTCAATCAAAGGTTACCTGCACTCAGACGCATCAGACCACCAATTTCTCGAGTTTCAGCCCTTGAAAGATTGAACAAACCAAAAGAAAAGGTAGAAGACACAACCTCAACTTCATATGTGACATGA

Coding sequence (CDS)

ATGACAAAGCAAGAAGTCGAAAAAGTTGAAGGTGGTCAGATGAACGTGATTCTACCTAAAAGTAGAACAAAAGATGGATTCGATCCAAATGCGTATAAACTCTTAGCAAAGGCAGGTTATGACTTTACGACTCACAATGAGTTTAAGGGTCTAAGCATCCTTGACGACAAACCTGAGCTTTCATCAACACAGAAGAAACTTGCGAATAAGGGTCATCAATTACTTGCATCACGAAATGGTCTTGGATATAAGCCGCTAGAGCCAGTTCAAATAACGAGAAAATGGAAGTTGAAAGTTGCAGATACAAATCACATAACAATTGATGAATGTGAAGATTCAAAAGGAGTGAAAAATGTCAATCAAAGGTTACCTGCACTCAGACGCATCAGACCACCAATTTCTCGAGTTTCAGCCCTTGAAAGATTGAACAAACCAAAAGAAAAGGTAGAAGACACAACCTCAACTTCATATGTGACATGA

Protein sequence

MTKQEVEKVEGGQMNVILPKSRTKDGFDPNAYKLLAKAGYDFTTHNEFKGLSILDDKPELSSTQKKLANKGHQLLASRNGLGYKPLEPVQITRKWKLKVADTNHITIDECEDSKGVKNVNQRLPALRRIRPPISRVSALERLNKPKEKVEDTTSTSYVT

Homology

[Close]

BLAST of Sed0014742 vs. NCBI nr
Match: XP_031737045.1 (uncharacterized protein LOC116402134 [Cucumis sativus])

HSP 1 Score: 149.4 bits (376), Expect = 2.5e-32
Identity = 78/150 (52.00%), Postives = 102/150 (68.00%), Query Frame = 0


Query: 1   MTKQEVEKVEGGQMNVILPKSRTKDGFDPNAYKLLAKAGYDFTTHNEFKGLSILDDKPEL 60
           +TK   ++V+   +   LP+ RTKDGFDP AYKL+AKAGYDFT H EFK L I  D+PEL
Sbjct: 368 LTKIAKQEVKVDLVEANLPQRRTKDGFDPKAYKLMAKAGYDFTAHTEFKSLEI-HDRPEL 427

Query: 61  SSTQKKLANKGHQLLASRNGLGYKPLEPVQITRKWKLKVADTNHITIDECEDSKGVKNVN 120
           SSTQKKL  +GH +  SR GLGYK  EP++IT+K K KV D NHITI+E +++   +  N
Sbjct: 428 SSTQKKLLREGHSIPVSRKGLGYKSPEPIRITKKGKEKVVDINHITIEEDDNTDVKEGDN 487

Query: 121 QRLPALRRIRPPISRVSALERLNKPKEKVE 151
           QR+    RIRP ++R    ERL+  + + E
Sbjct: 488 QRISVFDRIRPSVARPVVFERLSMTEAERE 516

[Close]

BLAST of Sed0014742 vs. NCBI nr
Match: XP_031739134.1 (uncharacterized protein LOC116402863 [Cucumis sativus])

HSP 1 Score: 149.4 bits (376), Expect = 2.5e-32
Identity = 78/150 (52.00%), Postives = 102/150 (68.00%), Query Frame = 0


Query: 1    MTKQEVEKVEGGQMNVILPKSRTKDGFDPNAYKLLAKAGYDFTTHNEFKGLSILDDKPEL 60
            +TK   ++V+   +   LP+ RTKDGFDP AYKL+AKAGYDFT H EFK L I  D+PEL
Sbjct: 993  LTKIAKQEVKVDLVEANLPQRRTKDGFDPKAYKLMAKAGYDFTAHTEFKSLEI-HDRPEL 1052

Query: 61   SSTQKKLANKGHQLLASRNGLGYKPLEPVQITRKWKLKVADTNHITIDECEDSKGVKNVN 120
            SSTQKKL  +GH +  SR GLGYK  EP++IT+K K KV D NHITI+E +++   +  N
Sbjct: 1053 SSTQKKLLREGHSIPVSRKGLGYKSPEPIRITKKGKEKVVDINHITIEEDDNTDVKEGDN 1112

Query: 121  QRLPALRRIRPPISRVSALERLNKPKEKVE 151
            QR+    RIRP ++R    ERL+  + + E
Sbjct: 1113 QRISVFDRIRPSVARPVVFERLSMTEAERE 1141

[Close]

BLAST of Sed0014742 vs. NCBI nr
Match: XP_031742032.1 (uncharacterized protein LOC116404025 [Cucumis sativus])

HSP 1 Score: 149.4 bits (376), Expect = 2.5e-32
Identity = 78/150 (52.00%), Postives = 102/150 (68.00%), Query Frame = 0


Query: 1    MTKQEVEKVEGGQMNVILPKSRTKDGFDPNAYKLLAKAGYDFTTHNEFKGLSILDDKPEL 60
            +TK   ++V+   +   LP+ RTKDGFDP AYKL+AKAGYDFT H EFK L I  D+PEL
Sbjct: 993  LTKIAKQEVKVDLVEANLPQRRTKDGFDPKAYKLMAKAGYDFTAHTEFKSLEI-HDRPEL 1052

Query: 61   SSTQKKLANKGHQLLASRNGLGYKPLEPVQITRKWKLKVADTNHITIDECEDSKGVKNVN 120
            SSTQKKL  +GH +  SR GLGYK  EP++IT+K K KV D NHITI+E +++   +  N
Sbjct: 1053 SSTQKKLLREGHSIPVSRKGLGYKSPEPIRITKKGKEKVVDINHITIEEDDNTDVKEGDN 1112

Query: 121  QRLPALRRIRPPISRVSALERLNKPKEKVE 151
            QR+    RIRP ++R    ERL+  + + E
Sbjct: 1113 QRISVFDRIRPSVARPVVFERLSMTEAERE 1141

[Close]

BLAST of Sed0014742 vs. NCBI nr
Match: XP_031737372.1 (uncharacterized protein LOC116402244 [Cucumis sativus])

HSP 1 Score: 149.4 bits (376), Expect = 2.5e-32
Identity = 78/150 (52.00%), Postives = 102/150 (68.00%), Query Frame = 0


Query: 1   MTKQEVEKVEGGQMNVILPKSRTKDGFDPNAYKLLAKAGYDFTTHNEFKGLSILDDKPEL 60
           +TK   ++V+   +   LP+ RTKDGFDP AYKL+AKAGYDFT H EFK L I  D+PEL
Sbjct: 368 LTKIAKQEVKVDLVEANLPQRRTKDGFDPKAYKLMAKAGYDFTAHTEFKSLEI-HDRPEL 427

Query: 61  SSTQKKLANKGHQLLASRNGLGYKPLEPVQITRKWKLKVADTNHITIDECEDSKGVKNVN 120
           SSTQKKL  +GH +  SR GLGYK  EP++IT+K K KV D NHITI+E +++   +  N
Sbjct: 428 SSTQKKLLREGHSIPVSRKGLGYKSPEPIRITKKGKEKVVDINHITIEEDDNTDVKEGDN 487

Query: 121 QRLPALRRIRPPISRVSALERLNKPKEKVE 151
           QR+    RIRP ++R    ERL+  + + E
Sbjct: 488 QRISVFDRIRPSVARPVVFERLSMTEAERE 516

[Close]

BLAST of Sed0014742 vs. NCBI nr
Match: XP_031742199.1 (uncharacterized protein LOC105435721 [Cucumis sativus])

HSP 1 Score: 149.4 bits (376), Expect = 2.5e-32
Identity = 78/150 (52.00%), Postives = 102/150 (68.00%), Query Frame = 0


Query: 1    MTKQEVEKVEGGQMNVILPKSRTKDGFDPNAYKLLAKAGYDFTTHNEFKGLSILDDKPEL 60
            +TK   ++V+   +   LP+ RTKDGFDP AYKL+AKAGYDFT H EFK L I  D+PEL
Sbjct: 852  LTKIAKQEVKVDLVEANLPQRRTKDGFDPKAYKLMAKAGYDFTAHTEFKSLEI-HDRPEL 911

Query: 61   SSTQKKLANKGHQLLASRNGLGYKPLEPVQITRKWKLKVADTNHITIDECEDSKGVKNVN 120
            SSTQKKL  +GH +  SR GLGYK  EP++IT+K K KV D NHITI+E +++   +  N
Sbjct: 912  SSTQKKLLREGHSIPVSRKGLGYKSPEPIRITKKGKEKVVDINHITIEEDDNTDVKEGDN 971

Query: 121  QRLPALRRIRPPISRVSALERLNKPKEKVE 151
            QR+    RIRP ++R    ERL+  + + E
Sbjct: 972  QRISVFDRIRPSVARPVVFERLSMTEAERE 1000

[Close]

BLAST of Sed0014742 vs. ExPASy TrEMBL
Match: A0A5D3BSG5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold775G00710 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 3.6e-32
Identity = 81/156 (51.92%), Postives = 106/156 (67.95%), Query Frame = 0


Query: 1   MTKQEVEKVEGGQMNVILPKSRTKDGFDPNAYKLLAKAGYDFTTHNEFKGLSILDDKPEL 60
           +TKQE+ K++       LP+ RTKDGFDP AYKL+AKAGYDFTTH EFK L I  ++P+L
Sbjct: 529 ITKQEI-KID--LTKASLPQRRTKDGFDPKAYKLMAKAGYDFTTHTEFKSLKI-HEQPKL 588

Query: 61  SSTQKKLANKGHQLLASRNGLGYKPLEPVQITRKWKLKVADTNHITIDECEDSKGVKNVN 120
           SSTQKKL  +GH +  SR GLGYK  EP++ITRK K KV D+NHIT+ E +  +  +  +
Sbjct: 589 SSTQKKLLREGHVIPMSRKGLGYKSPEPIRITRKGKEKVVDSNHITVKEVDSMEEYEGDS 648

Query: 121 QRLPALRRIRPPISRVSALERLNKPKEKVEDTTSTS 157
           QR  A  RI P ++R    ERL+  + + +D  STS
Sbjct: 649 QRTSAFDRISPHVARTPVFERLSMTEAERKDHQSTS 680

[Close]

BLAST of Sed0014742 vs. ExPASy TrEMBL
Match: A0A5A7UD46 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold174G001280 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 8.0e-32
Identity = 80/156 (51.28%), Postives = 108/156 (69.23%), Query Frame = 0


Query: 1   MTKQEVEKVEGGQMNVILPKSRTKDGFDPNAYKLLAKAGYDFTTHNEFKGLSILDDKPEL 60
           +TKQE+ K++  + +  LP+ RTKDGFDP AYKL+AKAGYDFTTH EFK L I  ++P+L
Sbjct: 376 ITKQEI-KIDLTEAS--LPQRRTKDGFDPKAYKLMAKAGYDFTTHTEFKSLKIY-EQPKL 435

Query: 61  SSTQKKLANKGHQLLASRNGLGYKPLEPVQITRKWKLKVADTNHITIDECEDSKGVKNVN 120
           SSTQKKL  +GH +  SR GLGYK  EP++ITRK K KV D+NHIT+ E +  +  +  +
Sbjct: 436 SSTQKKLLREGHVIPMSRKGLGYKSPEPIRITRKGKEKVVDSNHITLKEADSMEEKEGDS 495

Query: 121 QRLPALRRIRPPISRVSALERLNKPKEKVEDTTSTS 157
           QR  A  RI P ++R    E+L+  + + +D  STS
Sbjct: 496 QRTSAFDRISPHVARAPVFEKLSMTEAERKDHQSTS 527

[Close]

BLAST of Sed0014742 vs. ExPASy TrEMBL
Match: A0A5D3DXC7 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold289G00760 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 1.4e-31
Identity = 75/139 (53.96%), Postives = 96/139 (69.06%), Query Frame = 0


Query: 18  LPKSRTKDGFDPNAYKLLAKAGYDFTTHNEFKGLSILDDKPELSSTQKKLANKGHQLLAS 77
           LP+ RTKDGFDP AYKL+AKAGYDFTTH +FK L I  ++P+LSSTQKKL  +GH +  S
Sbjct: 222 LPQRRTKDGFDPKAYKLMAKAGYDFTTHTDFKSLKI-HEQPKLSSTQKKLLREGHVIPMS 281

Query: 78  RNGLGYKPLEPVQITRKWKLKVADTNHITIDECEDSKGVKNVNQRLPALRRIRPPISRVS 137
           R GLGYK  EP++ITRK K KV D+NHIT+ E +  +  +  NQR     RI P ++R  
Sbjct: 282 RKGLGYKSPEPIRITRKGKEKVVDSNHITVKEVDSMEEKEGDNQRTSTFDRISPHVARAP 341

Query: 138 ALERLNKPKEKVEDTTSTS 157
             ERL+  + + +D  STS
Sbjct: 342 VFERLSMTEAERKDHQSTS 359

[Close]

BLAST of Sed0014742 vs. ExPASy TrEMBL
Match: A0A5A7TJZ7 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G003220 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 3.0e-31
Identity = 81/156 (51.92%), Postives = 105/156 (67.31%), Query Frame = 0


Query: 1   MTKQEVEKVEGGQMNVILPKSRTKDGFDPNAYKLLAKAGYDFTTHNEFKGLSILDDKPEL 60
           +TKQE+ K++  + +  LP+S TKDGFDP AYKL+AK GYDFTTH EFK L I  ++P+L
Sbjct: 787 ITKQEI-KIDLTEAS--LPQSWTKDGFDPKAYKLMAKVGYDFTTHIEFKSLKI-HEQPKL 846

Query: 61  SSTQKKLANKGHQLLASRNGLGYKPLEPVQITRKWKLKVADTNHITIDECEDSKGVKNVN 120
           SSTQKKL  +GH +  SR GLGYK  EP++ITRK K KV D NHIT+ E +  K  +   
Sbjct: 847 SSTQKKLLREGHAIPMSRKGLGYKSPEPIRITRKGKEKVVDNNHITVKEVDSMKEKEGDG 906

Query: 121 QRLPALRRIRPPISRVSALERLNKPKEKVEDTTSTS 157
           QR  A  RI P ++R    ERL+  + + +D  STS
Sbjct: 907 QRTSAFDRISPHVARTPVFERLSMTEVERKDHQSTS 938

[Close]

BLAST of Sed0014742 vs. ExPASy TrEMBL
Match: A0A5D3C0W6 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold143G002360 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 4.0e-31
Identity = 80/156 (51.28%), Postives = 107/156 (68.59%), Query Frame = 0


Query: 1   MTKQEVEKVEGGQMNVILPKSRTKDGFDPNAYKLLAKAGYDFTTHNEFKGLSILDDKPEL 60
           +TKQE+ K++  + +  LP+ RTKD FDP AYKL+AKAGYDFTTH EFK L I  ++P+L
Sbjct: 743 ITKQEI-KIDLTEAS--LPQRRTKDEFDPKAYKLMAKAGYDFTTHTEFKSLKI-HEQPKL 802

Query: 61  SSTQKKLANKGHQLLASRNGLGYKPLEPVQITRKWKLKVADTNHITIDECEDSKGVKNVN 120
           SSTQKKL  +GH +  SR GLGYK  EP++ITRK K K+ D+NHIT+ E +  K  +  +
Sbjct: 803 SSTQKKLLREGHAIPMSRKGLGYKLPEPIRITRKGKEKMVDSNHITVKEVDSMKEKEGDS 862

Query: 121 QRLPALRRIRPPISRVSALERLNKPKEKVEDTTSTS 157
           QR  A  RI P ++R    ERL+  + + +D  STS
Sbjct: 863 QRTSAFDRISPHVARAPVFERLSVTEAERKDHQSTS 894

The following BLAST results are available for this feature:

BLAST of Sed0014742 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031737045.1	2.5e-32	52.00	uncharacterized protein LOC116402134 [Cucumis sativus]	[more]
XP_031739134.1	2.5e-32	52.00	uncharacterized protein LOC116402863 [Cucumis sativus]	[more]
XP_031742032.1	2.5e-32	52.00	uncharacterized protein LOC116404025 [Cucumis sativus]	[more]
XP_031737372.1	2.5e-32	52.00	uncharacterized protein LOC116402244 [Cucumis sativus]	[more]
XP_031742199.1	2.5e-32	52.00	uncharacterized protein LOC105435721 [Cucumis sativus]	[more]

BLAST of Sed0014742 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0014742 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BSG5	3.6e-32	51.92	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7UD46	8.0e-32	51.28	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3DXC7	1.4e-31	53.96	Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1...	[more]
A0A5A7TJZ7	3.0e-31	51.92	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5D3C0W6	4.0e-31	51.28	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

BLAST of Sed0014742 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 137..159

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0014742.1	Sed0014742.1	mRNA