Sed0014638 (gene) Chayote v1

Overview
NameSed0014638
Typegene
OrganismSechium edule (Chayote v1)
DescriptionTransmembrane protein
LocationLG01: 1772442 .. 1772819 (+)
RNA-Seq ExpressionSed0014638
SyntenySed0014638
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGTGGTTACAACCAAGGAGGAGAGGTCCAGAGTGGAAGCAAGGATGGGCAGGCCAAACCCTAAATTCTGTTTCTTCCCCACCACCTCAATTGCTAACAATTTTTGGCATTGTCATTGTCCTTCTTTGCTTCTCTCAGAACAAAGGCCATGAAGCTCAAATGTATAGGTCAGCTGCCAATTTTCAGCTGGCTCTTTTCTTGTTGCCCATTTTGGTAATTTTTGTCATGTCTTCATATTCCCTCGGTGGACTGTTTAACTTTCGATTTCGGCAACTGGCCACCAGGTCGACTCGACGAGGTGCCTCACCTTGGACCATTGCCATTTTGGTCCCTCTCATTCTGGTTTTGCTTTATTTCCAACCCTCGTTCCATTGA

mRNA sequence

ATGGAGTGGTTACAACCAAGGAGGAGAGGTCCAGAGTGGAAGCAAGGATGGGCAGGCCAAACCCTAAATTCTGTTTCTTCCCCACCACCTCAATTGCTAACAATTTTTGGCATTGTCATTGTCCTTCTTTGCTTCTCTCAGAACAAAGGCCATGAAGCTCAAATGTATAGGTCAGCTGCCAATTTTCAGCTGGCTCTTTTCTTGTTGCCCATTTTGGTAATTTTTGTCATGTCTTCATATTCCCTCGGTGGACTGTTTAACTTTCGATTTCGGCAACTGGCCACCAGGTCGACTCGACGAGGTGCCTCACCTTGGACCATTGCCATTTTGGTCCCTCTCATTCTGGTTTTGCTTTATTTCCAACCCTCGTTCCATTGA

Coding sequence (CDS)

ATGGAGTGGTTACAACCAAGGAGGAGAGGTCCAGAGTGGAAGCAAGGATGGGCAGGCCAAACCCTAAATTCTGTTTCTTCCCCACCACCTCAATTGCTAACAATTTTTGGCATTGTCATTGTCCTTCTTTGCTTCTCTCAGAACAAAGGCCATGAAGCTCAAATGTATAGGTCAGCTGCCAATTTTCAGCTGGCTCTTTTCTTGTTGCCCATTTTGGTAATTTTTGTCATGTCTTCATATTCCCTCGGTGGACTGTTTAACTTTCGATTTCGGCAACTGGCCACCAGGTCGACTCGACGAGGTGCCTCACCTTGGACCATTGCCATTTTGGTCCCTCTCATTCTGGTTTTGCTTTATTTCCAACCCTCGTTCCATTGA

Protein sequence

MEWLQPRRRGPEWKQGWAGQTLNSVSSPPPQLLTIFGIVIVLLCFSQNKGHEAQMYRSAANFQLALFLLPILVIFVMSSYSLGGLFNFRFRQLATRSTRRGASPWTIAILVPLILVLLYFQPSFH
Homology
BLAST of Sed0014638 vs. NCBI nr
Match: KAG7010871.1 (hypothetical protein SDJN02_27669, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 180.6 bits (457), Expect = 8.1e-42
Identity = 96/127 (75.59%), Postives = 106/127 (83.46%), Query Frame = 0

Query: 1   MEWLQPRRRGPEWKQGWAGQTL-NSVSSPPPQLLTIFGIVIVLLCFSQN-KGHEAQMYRS 60
           MEWL+P+RRGPEWKQ W GQTL  SVSSPPPQLLTIFGIVIVLL FSQ+  G++ QM+RS
Sbjct: 1   MEWLEPKRRGPEWKQEWTGQTLGGSVSSPPPQLLTIFGIVIVLLWFSQSTTGYDTQMHRS 60

Query: 61  AANFQLALFLLPILVIFVMSSYSLGGLFNFRFRQLATRSTRRGASPWTIAILVPLILVLL 120
           A+NFQL LFLLPILVIF MSSYS+ GL N R  + AT S RRGASP TI ILV LILVLL
Sbjct: 61  ASNFQLLLFLLPILVIFFMSSYSMCGLINLRSWRSATGSPRRGASPLTITILVSLILVLL 120

Query: 121 YFQPSFH 126
           YF+PSFH
Sbjct: 121 YFRPSFH 127

BLAST of Sed0014638 vs. NCBI nr
Match: KAF3434655.1 (hypothetical protein FNV43_RR21740 [Rhamnella rubrinervis])

HSP 1 Score: 150.2 bits (378), Expect = 1.2e-32
Identity = 77/126 (61.11%), Postives = 94/126 (74.60%), Query Frame = 0

Query: 1   MEWLQPRRRGPEWKQGWAGQTLNSVSSPPPQLLTIFGIVIVLLCFSQNKGHEAQMYRSAA 60
           MEW  P+RRGPEWKQGW GQTL S+S+PP  LLTIFGIVIVLL FSQ  G++AQ+ ++  
Sbjct: 1   MEWFYPKRRGPEWKQGWTGQTLTSISAPPLHLLTIFGIVIVLLWFSQYTGYKAQLQQTTV 60

Query: 61  NFQLALFLLPILVIFVMSSY-SLGGLFNFRFRQLATRSTRRGASPWTIAILVPLILVLLY 120
           NFQL L +LPIL+IF M+ Y S GG FNF+ R+      R G SPW +AIL+ L+LVLL 
Sbjct: 61  NFQLFLMVLPILLIFFMALYSSSGGWFNFQLRR-PEAFHRAGGSPWGVAILLVLLLVLLS 120

Query: 121 FQPSFH 126
           +Q SFH
Sbjct: 121 YQSSFH 125

BLAST of Sed0014638 vs. NCBI nr
Match: KGN61894.1 (hypothetical protein Csa_005908 [Cucumis sativus])

HSP 1 Score: 150.2 bits (378), Expect = 1.2e-32
Identity = 87/128 (67.97%), Postives = 95/128 (74.22%), Query Frame = 0

Query: 1   MEWLQPRRRGPEWKQG--WAGQTLNSVSSPPPQLLTIFGIVIVLLCFSQ-NKGHEAQMYR 60
           M+   P+RRGPEWK+G    GQTL+SVS PP QLL IFGIVIVLL FSQ N GHEAQ+ R
Sbjct: 1   MDCFYPKRRGPEWKRGLTGTGQTLSSVSPPPIQLLIIFGIVIVLLWFSQFNAGHEAQLNR 60

Query: 61  SAANFQLALFLLPILVIFVMSSYSLGGLFNFRFRQLATRSTRRGASPWTIAILVPLILVL 120
           S   FQL LFLLPI VIF M SYS   L NF FR+  T   +RGASPWTIAILV LILVL
Sbjct: 61  S---FQLFLFLLPIFVIFFMYSYSSSRLINFGFRRSPTGLAQRGASPWTIAILVLLILVL 120

Query: 121 LYFQPSFH 126
           LY+Q SFH
Sbjct: 121 LYYQSSFH 125

BLAST of Sed0014638 vs. NCBI nr
Match: KDP27587.1 (hypothetical protein JCGZ_19592 [Jatropha curcas])

HSP 1 Score: 148.7 bits (374), Expect = 3.4e-32
Identity = 74/127 (58.27%), Postives = 94/127 (74.02%), Query Frame = 0

Query: 1   MEWLQPRRRGPEWKQGWAGQTLNSVSSPPPQLLTIFGIVIVLLCFSQNKGHEAQMYRSAA 60
           MEW  P+RRGP+WKQGWAGQT+NS+S+PPP LLTIFGIVI+LL  SQ  G++AQ+  SA 
Sbjct: 1   MEWFYPKRRGPDWKQGWAGQTMNSISTPPPSLLTIFGIVILLLWLSQYTGYKAQLRHSAI 60

Query: 61  NFQLALFLLPILVIFVMSSYSLGGLFNFRFRQLATRSTR--RGASPWTIAILVPLILVLL 120
           NFQL +FLLPIL+I +++  S   +  FR RQ    S R   G+SPW +AI V ++LVLL
Sbjct: 61  NFQLFIFLLPILLILLLACSSTNWMLYFRHRQPQPDSARPDSGSSPWGMAIFVVVLLVLL 120

Query: 121 YFQPSFH 126
            +Q SFH
Sbjct: 121 SYQSSFH 127

BLAST of Sed0014638 vs. NCBI nr
Match: KAB2051186.1 (hypothetical protein ES319_A12G039100v1 [Gossypium barbadense] >PPS17821.1 hypothetical protein GOBAR_AA02742 [Gossypium barbadense])

HSP 1 Score: 145.2 bits (365), Expect = 3.8e-31
Identity = 73/126 (57.94%), Postives = 91/126 (72.22%), Query Frame = 0

Query: 1   MEWLQPRRRGPEWKQGWAGQTLNSVSSPPPQLLTIFGIVIVLLCFSQNKGHEAQMYRSAA 60
           MEWL PRRRGP+WKQGW+GQTL S+SSPP  L+TIFGIV+VLL FSQ   + A ++ SA 
Sbjct: 26  MEWLYPRRRGPQWKQGWSGQTLPSMSSPPLPLVTIFGIVLVLLWFSQYADYRAHLHNSAI 85

Query: 61  NFQLALFLLPILVIFVMSSYSLGGLFNFRFRQLATRSTRRG-ASPWTIAILVPLILVLLY 120
           NFQL L LLP+L++F M S+S  G F F  R+L   +      SPW IA+LV L+ VLL+
Sbjct: 86  NFQLFLILLPVLLVFFMVSFSSSGRFAFWQRRLGRHTVHPSRGSPWGIAVLVGLLFVLLF 145

Query: 121 FQPSFH 126
           +Q SFH
Sbjct: 146 YQSSFH 151

BLAST of Sed0014638 vs. ExPASy TrEMBL
Match: A0A0A0LLH8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G263890 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 5.7e-33
Identity = 87/128 (67.97%), Postives = 95/128 (74.22%), Query Frame = 0

Query: 1   MEWLQPRRRGPEWKQG--WAGQTLNSVSSPPPQLLTIFGIVIVLLCFSQ-NKGHEAQMYR 60
           M+   P+RRGPEWK+G    GQTL+SVS PP QLL IFGIVIVLL FSQ N GHEAQ+ R
Sbjct: 1   MDCFYPKRRGPEWKRGLTGTGQTLSSVSPPPIQLLIIFGIVIVLLWFSQFNAGHEAQLNR 60

Query: 61  SAANFQLALFLLPILVIFVMSSYSLGGLFNFRFRQLATRSTRRGASPWTIAILVPLILVL 120
           S   FQL LFLLPI VIF M SYS   L NF FR+  T   +RGASPWTIAILV LILVL
Sbjct: 61  S---FQLFLFLLPIFVIFFMYSYSSSRLINFGFRRSPTGLAQRGASPWTIAILVLLILVL 120

Query: 121 LYFQPSFH 126
           LY+Q SFH
Sbjct: 121 LYYQSSFH 125

BLAST of Sed0014638 vs. ExPASy TrEMBL
Match: A0A067JUL1 (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_19592 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 1.7e-32
Identity = 74/127 (58.27%), Postives = 94/127 (74.02%), Query Frame = 0

Query: 1   MEWLQPRRRGPEWKQGWAGQTLNSVSSPPPQLLTIFGIVIVLLCFSQNKGHEAQMYRSAA 60
           MEW  P+RRGP+WKQGWAGQT+NS+S+PPP LLTIFGIVI+LL  SQ  G++AQ+  SA 
Sbjct: 1   MEWFYPKRRGPDWKQGWAGQTMNSISTPPPSLLTIFGIVILLLWLSQYTGYKAQLRHSAI 60

Query: 61  NFQLALFLLPILVIFVMSSYSLGGLFNFRFRQLATRSTR--RGASPWTIAILVPLILVLL 120
           NFQL +FLLPIL+I +++  S   +  FR RQ    S R   G+SPW +AI V ++LVLL
Sbjct: 61  NFQLFIFLLPILLILLLACSSTNWMLYFRHRQPQPDSARPDSGSSPWGMAIFVVVLLVLL 120

Query: 121 YFQPSFH 126
            +Q SFH
Sbjct: 121 SYQSSFH 127

BLAST of Sed0014638 vs. ExPASy TrEMBL
Match: A0A2P5YQK7 (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_A12G039100v1 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 1.8e-31
Identity = 73/126 (57.94%), Postives = 91/126 (72.22%), Query Frame = 0

Query: 1   MEWLQPRRRGPEWKQGWAGQTLNSVSSPPPQLLTIFGIVIVLLCFSQNKGHEAQMYRSAA 60
           MEWL PRRRGP+WKQGW+GQTL S+SSPP  L+TIFGIV+VLL FSQ   + A ++ SA 
Sbjct: 26  MEWLYPRRRGPQWKQGWSGQTLPSMSSPPLPLVTIFGIVLVLLWFSQYADYRAHLHNSAI 85

Query: 61  NFQLALFLLPILVIFVMSSYSLGGLFNFRFRQLATRSTRRG-ASPWTIAILVPLILVLLY 120
           NFQL L LLP+L++F M S+S  G F F  R+L   +      SPW IA+LV L+ VLL+
Sbjct: 86  NFQLFLILLPVLLVFFMVSFSSSGRFAFWQRRLGRHTVHPSRGSPWGIAVLVGLLFVLLF 145

Query: 121 FQPSFH 126
           +Q SFH
Sbjct: 146 YQSSFH 151

BLAST of Sed0014638 vs. ExPASy TrEMBL
Match: A0A1Q3DG80 (Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_34892 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 2.4e-31
Identity = 69/126 (54.76%), Postives = 95/126 (75.40%), Query Frame = 0

Query: 1   MEWLQPRRRGPEWKQGWAGQTLNSVSSPPPQLLTIFGIVIVLLCFSQNKGHEAQMYRSAA 60
           MEW   +RRGPEWKQGW GQT+ S+S+PP  LLT+FGIVIVLL  SQ   + +Q++ +A 
Sbjct: 1   MEWFYTKRRGPEWKQGWTGQTVASISTPPAALLTVFGIVIVLLLLSQYTQYNSQLHHTAT 60

Query: 61  NFQLALFLLPILVIFVMSSYSLGGLFNFRFRQLATRSTRR-GASPWTIAILVPLILVLLY 120
           NF+L++FLLPIL+IF M+++S  G +NF+  ++   + +R G SPW +AILV L+LVLL 
Sbjct: 61  NFKLSIFLLPILLIFFMAAFSSSGRYNFQLPRIGHGAMQRAGGSPWGLAILVLLVLVLLS 120

Query: 121 FQPSFH 126
           +Q SFH
Sbjct: 121 YQSSFH 126

BLAST of Sed0014638 vs. ExPASy TrEMBL
Match: A0A6P6AE81 (uncharacterized protein LOC111308773 OS=Durio zibethinus OX=66656 GN=LOC111308773 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 2.4e-31
Identity = 73/126 (57.94%), Postives = 94/126 (74.60%), Query Frame = 0

Query: 1   MEWLQPRRRGPEWKQGWAGQTLNSVSSPPPQLLTIFGIVIVLLCFSQNKGHEAQMYRSAA 60
           MEW+ PRRRGP+WKQGW GQTL+SVS+PP  LLTIFGIV+VLL  SQ  G++A+++ +A 
Sbjct: 1   MEWVYPRRRGPQWKQGWTGQTLSSVSAPPIPLLTIFGIVVVLLWLSQYTGYKARLHHTAI 60

Query: 61  NFQLALFLLPILVIFVMSSYSLGGLFNFRFRQLATRSTRR-GASPWTIAILVPLILVLLY 120
           NFQL + +LPIL+IF M S+S  G   F  ++L   +  R G SPW IAILV ++LVLL 
Sbjct: 61  NFQLFIIILPILLIFFMISFSSSGRLAFWQQRLEHETVHRSGGSPWGIAILVGVLLVLLC 120

Query: 121 FQPSFH 126
           +Q SFH
Sbjct: 121 YQSSFH 126

BLAST of Sed0014638 vs. TAIR 10
Match: AT5G42146.1 (unknown protein; Has 98 Blast hits to 98 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 75.1 bits (183), Expect = 4.5e-14
Identity = 44/130 (33.85%), Postives = 71/130 (54.62%), Query Frame = 0

Query: 1   MEWLQPRRRGPEWKQGWAGQTLNSVSSPPPQLLTIFGIVIVLLCFSQNKGHEAQMYRSAA 60
           M W    RRG  WK+GW  +TL + S+PP  LL +  I+ +LL  S    ++ ++ ++AA
Sbjct: 1   MGWFIKERRGGSWKRGWLEETLLTSSAPPLTLLALLAIISLLLFLSSYPRYKYEVEKTAA 60

Query: 61  NFQLALFLLPILVIFVMSSYSLGG--LFNFRFRQLATRSTR---RGASPWTIAILVPLIL 120
           N +L +  LPIL +FV+ S S     LF   +   A ++      G  PW + +++ L+L
Sbjct: 61  NLKLFMLFLPILFVFVLVSLSFVHRLLFKSSYSVRANQAKSLFGEGNFPWGVLLMLILLL 120

Query: 121 VLLYFQPSFH 126
           +L+  Q  FH
Sbjct: 121 LLVSKQSYFH 130

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7010871.18.1e-4275.59hypothetical protein SDJN02_27669, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAF3434655.11.2e-3261.11hypothetical protein FNV43_RR21740 [Rhamnella rubrinervis][more]
KGN61894.11.2e-3267.97hypothetical protein Csa_005908 [Cucumis sativus][more]
KDP27587.13.4e-3258.27hypothetical protein JCGZ_19592 [Jatropha curcas][more]
KAB2051186.13.8e-3157.94hypothetical protein ES319_A12G039100v1 [Gossypium barbadense] >PPS17821.1 hypot... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LLH85.7e-3367.97Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G263890 PE=4 SV=1[more]
A0A067JUL11.7e-3258.27Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_19592 PE=4 SV=1[more]
A0A2P5YQK71.8e-3157.94Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_A12G039100v1 PE... [more]
A0A1Q3DG802.4e-3154.76Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_34892 PE=4... [more]
A0A6P6AE812.4e-3157.94uncharacterized protein LOC111308773 OS=Durio zibethinus OX=66656 GN=LOC11130877... [more]
Match NameE-valueIdentityDescription
AT5G42146.14.5e-1433.85unknown protein; Has 98 Blast hits to 98 proteins in 12 species: Archae - 0; Bac... [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33306EXPRESSED PROTEIN-RELATED-RELATEDcoord: 1..125
NoneNo IPR availablePANTHERPTHR33306:SF21EXPRESSED PROTEINcoord: 1..125

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0014638.1Sed0014638.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane