Sed0014576 (gene) Chayote v1

Overview


Name	Sed0014576
Type	gene
Organism	Sechium edule (Chayote v1)
Description	protein NIM1-INTERACTING 1
Location	LG09: 37343063 .. 37343494 (-)
RNA-Seq Expression	Sed0014576
Synteny	Sed0014576

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ACGCAAACAGCGTGAGTAAACTTTTTCAGTTTCTTTTTCTTTGTTTGCACGAAACTTGCGTTTCAAGCGAAAATGGAAAAGCAGAGCCTGCCGGCGCCGGCTCCGGAGGTGGCGACCGTCGCCGCCGACGGCGAGGAGGAGATGAAGATGGAGACGTTTTTCGCTCTGATTAGGAATTTCAAGGAAATGCGTGATCGGCGGAGGGAGGAGTTGATGATCGGGTGCGAATCGGCGGCGGAGAAGAAGAGGAAGAAGATGACGACGGTGCCGAATCGGTCCACGTGGATTCCGAGGTTTGAGATGGAGGATTTTGAGGAGGATTTTCCGGTGAGAGGACCGGCGAAGGAAGAGACGCCGGCGATGATGATGGAGAAGAAGAAGACGAAAGTGGAAAGTGGAGAGGATTGTTTGGATCTTAATCTTGCTCTCTAA

mRNA sequence

ACGCAAACAGCGTGAGTAAACTTTTTCAGTTTCTTTTTCTTTGTTTGCACGAAACTTGCGTTTCAAGCGAAAATGGAAAAGCAGAGCCTGCCGGCGCCGGCTCCGGAGGTGGCGACCGTCGCCGCCGACGGCGAGGAGGAGATGAAGATGGAGACGTTTTTCGCTCTGATTAGGAATTTCAAGGAAATGCGTGATCGGCGGAGGGAGGAGTTGATGATCGGGTGCGAATCGGCGGCGGAGAAGAAGAGGAAGAAGATGACGACGGTGCCGAATCGGTCCACGTGGATTCCGAGGTTTGAGATGGAGGATTTTGAGGAGGATTTTCCGGTGAGAGGACCGGCGAAGGAAGAGACGCCGGCGATGATGATGGAGAAGAAGAAGACGAAAGTGGAAAGTGGAGAGGATTGTTTGGATCTTAATCTTGCTCTCTAA

Coding sequence (CDS)

ATGGAAAAGCAGAGCCTGCCGGCGCCGGCTCCGGAGGTGGCGACCGTCGCCGCCGACGGCGAGGAGGAGATGAAGATGGAGACGTTTTTCGCTCTGATTAGGAATTTCAAGGAAATGCGTGATCGGCGGAGGGAGGAGTTGATGATCGGGTGCGAATCGGCGGCGGAGAAGAAGAGGAAGAAGATGACGACGGTGCCGAATCGGTCCACGTGGATTCCGAGGTTTGAGATGGAGGATTTTGAGGAGGATTTTCCGGTGAGAGGACCGGCGAAGGAAGAGACGCCGGCGATGATGATGGAGAAGAAGAAGACGAAAGTGGAAAGTGGAGAGGATTGTTTGGATCTTAATCTTGCTCTCTAA

Protein sequence

MEKQSLPAPAPEVATVAADGEEEMKMETFFALIRNFKEMRDRRREELMIGCESAAEKKRKKMTTVPNRSTWIPRFEMEDFEEDFPVRGPAKEETPAMMMEKKKTKVESGEDCLDLNLAL

Homology

[Close]

BLAST of Sed0014576 vs. NCBI nr
Match: KAG6593261.1 (hypothetical protein SDJN03_12737, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 144.8 bits (364), Expect = 4.7e-31
Identity = 81/127 (63.78%), Postives = 96/127 (75.59%), Query Frame = 0


Query: 1   MEKQSLPAPAPEVATVAADG--EEEMKMETFFALIRNFKEMRDRRREELMIGCE----SA 60
           MEKQSL      VA+ A DG  EEEMKME FFAL+RNFKEMRD+RR+ELMIGC     +A
Sbjct: 1   MEKQSLKTTGKRVASAAVDGEEEEEMKMEAFFALVRNFKEMRDQRRKELMIGCNGEKAAA 60

Query: 61  AEKKRKKMTTVPNRSTWIPRFEMEDFEEDFPVRGPAKEE--TPAMMMEKKKTKVESGEDC 120
           AE +++KM TV NRS WIPRFE EDF+E+F VRGPAKEE    A++  KKK KV++ ED 
Sbjct: 61  AEMRKRKMKTVENRSAWIPRFEREDFDEEFQVRGPAKEEAAAAAIVTAKKKKKVKNEEDI 120

[Close]

BLAST of Sed0014576 vs. NCBI nr
Match: KAG7025612.1 (hypothetical protein SDJN02_12109, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 143.3 bits (360), Expect = 1.4e-30
Identity = 81/129 (62.79%), Postives = 95/129 (73.64%), Query Frame = 0


Query: 1   MEKQSLPAPAPEVATVAADG----EEEMKMETFFALIRNFKEMRDRRREELMIGCE---- 60
           MEKQSL      VA+ A DG    EEEMKME FFAL+RNFKEMRD+RR+ELMIGC     
Sbjct: 1   MEKQSLKTTGKRVASAAVDGEEEEEEEMKMEAFFALVRNFKEMRDQRRKELMIGCNGEKA 60

Query: 61  SAAEKKRKKMTTVPNRSTWIPRFEMEDFEEDFPVRGPAKEE--TPAMMMEKKKTKVESGE 120
           +AAE +++KM TV NRS WIPRFE EDF+E+F VRGPAKEE    A+   KKK KV++ E
Sbjct: 61  AAAEMRKRKMKTVENRSAWIPRFEREDFDEEFQVRGPAKEEAAAAAIATAKKKKKVKNEE 120

[Close]

BLAST of Sed0014576 vs. NCBI nr
Match: XP_023514605.1 (protein NIM1-INTERACTING 1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 142.1 bits (357), Expect = 3.0e-30
Identity = 80/126 (63.49%), Postives = 94/126 (74.60%), Query Frame = 0


Query: 1   MEKQSLPAPAPEVATVAADG---EEEMKMETFFALIRNFKEMRDRRREELMIGCE----S 60
           MEKQSL      VA  A DG   EEEMKME FFAL+RNFKEMRD+RR+ELMIGC+    +
Sbjct: 1   MEKQSLKPTGKRVAVAAVDGEEEEEEMKMEAFFALVRNFKEMRDQRRKELMIGCDGEKAA 60

Query: 61  AAEKKRKKMTTVPNRSTWIPRFEMEDFEEDFPVRGPAKEETPAMMMEKKKTKVESGEDCL 120
           AAE +++KM TV NRS WIPRFE EDF+E+F +RGPAKEE  A    KKK KV++ ED L
Sbjct: 61  AAEMRKRKMKTVENRSAWIPRFEREDFDEEFQLRGPAKEEAAA--AAKKKKKVKNEEDIL 120

[Close]

BLAST of Sed0014576 vs. NCBI nr
Match: XP_022960173.1 (protein NIM1-INTERACTING 1 [Cucurbita moschata])

HSP 1 Score: 140.6 bits (353), Expect = 8.9e-30
Identity = 82/131 (62.60%), Postives = 97/131 (74.05%), Query Frame = 0


Query: 1   MEKQSLPAPAPEVATVAA----DG--EEEMKMETFFALIRNFKEMRDRRREELMIGCE-- 60
           MEKQSL      VA+ AA    DG  EEEMKME FFAL+RNFKEMRD+RR+ELMIGC+  
Sbjct: 1   MEKQSLKTTGKRVASAAAAAAVDGEEEEEMKMEAFFALVRNFKEMRDQRRKELMIGCDGE 60

Query: 61  --SAAEKKRKKMTTVPNRSTWIPRFEMEDFEEDFPVRGPAKEE--TPAMMMEKKKTKVES 120
             +AAE +++KM TV NRS WIPRFE EDF+E+F VRGPAKEE    A+   KKK KV++
Sbjct: 61  KAAAAEMRKRKMKTVENRSAWIPRFEREDFDEEFQVRGPAKEEAAAAAIATAKKKKKVKN 120

[Close]

BLAST of Sed0014576 vs. NCBI nr
Match: XP_023004697.1 (protein NIM1-INTERACTING 1 [Cucurbita maxima])

HSP 1 Score: 132.1 bits (331), Expect = 3.2e-27
Identity = 77/127 (60.63%), Postives = 89/127 (70.08%), Query Frame = 0


Query: 1   MEKQSLPAPAPEVATVAAD----GEEEMKMETFFALIRNFKEMRDRRREELMIGCE---- 60
           MEKQSL      VA    D     EEEMKME FF L+RNFKEMRD+RR+ELMI C+    
Sbjct: 1   MEKQSLKTTGKRVAAATVDREEEKEEEMKMEAFFDLVRNFKEMRDQRRKELMIVCDGEKA 60

Query: 61  SAAEKKRKKMTTVPNRSTWIPRFEMEDFEEDFPVRGPAKEETPAMMMEKKKTKVESGEDC 120
           +AAE ++KKM TV NRS WIPRFE EDF+E+F VRGPAKEE  A     KK KV++ ED 
Sbjct: 61  AAAEMRKKKMKTVENRSAWIPRFEREDFDEEFQVRGPAKEEAAA----AKKKKVKNEEDI 120

[Close]

BLAST of Sed0014576 vs. ExPASy Swiss-Prot
Match: Q9FNZ5 (Protein NIM1-INTERACTING 1 OS=Arabidopsis thaliana OX=3702 GN=NIMIN-1 PE=1 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 3.5e-05
Identity = 38/106 (35.85%), Postives = 56/106 (52.83%), Query Frame = 0


Query: 21  EEEMKMETFFALIRNFKEMRDRRREELMIGCESAAEKKRKKMTTVPNRSTWIPRFEMEDF 80
           EEE K++TFF LI++++E R RRREEL    E++   +RK           +P F+ EDF
Sbjct: 41  EEEKKIDTFFKLIKHYQEARKRRREEL---AENSGVVRRKS-NGGERSGIVVPAFQPEDF 100

Query: 81  EEDFPVRGPA-------KEETPAMMMEKKKTKVESGEDCLDLNLAL 120
            +      P        KEE   +  E+ +T+  + +  LDLNLAL
Sbjct: 101 SQCRTGLKPPLMFVSDHKEENTKVEQEEDQTEERNEDKALDLNLAL 142

[Close]

BLAST of Sed0014576 vs. ExPASy TrEMBL
Match: A0A6J1H831 (protein NIM1-INTERACTING 1 OS=Cucurbita moschata OX=3662 GN=LOC111460992 PE=3 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 4.3e-30
Identity = 82/131 (62.60%), Postives = 97/131 (74.05%), Query Frame = 0


Query: 1   MEKQSLPAPAPEVATVAA----DG--EEEMKMETFFALIRNFKEMRDRRREELMIGCE-- 60
           MEKQSL      VA+ AA    DG  EEEMKME FFAL+RNFKEMRD+RR+ELMIGC+  
Sbjct: 1   MEKQSLKTTGKRVASAAAAAAVDGEEEEEMKMEAFFALVRNFKEMRDQRRKELMIGCDGE 60

Query: 61  --SAAEKKRKKMTTVPNRSTWIPRFEMEDFEEDFPVRGPAKEE--TPAMMMEKKKTKVES 120
             +AAE +++KM TV NRS WIPRFE EDF+E+F VRGPAKEE    A+   KKK KV++
Sbjct: 61  KAAAAEMRKRKMKTVENRSAWIPRFEREDFDEEFQVRGPAKEEAAAAAIATAKKKKKVKN 120

[Close]

BLAST of Sed0014576 vs. ExPASy TrEMBL
Match: A0A6J1KR57 (protein NIM1-INTERACTING 1 OS=Cucurbita maxima OX=3661 GN=LOC111497915 PE=3 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 1.5e-27
Identity = 77/127 (60.63%), Postives = 89/127 (70.08%), Query Frame = 0


Query: 1   MEKQSLPAPAPEVATVAAD----GEEEMKMETFFALIRNFKEMRDRRREELMIGCE---- 60
           MEKQSL      VA    D     EEEMKME FF L+RNFKEMRD+RR+ELMI C+    
Sbjct: 1   MEKQSLKTTGKRVAAATVDREEEKEEEMKMEAFFDLVRNFKEMRDQRRKELMIVCDGEKA 60

Query: 61  SAAEKKRKKMTTVPNRSTWIPRFEMEDFEEDFPVRGPAKEETPAMMMEKKKTKVESGEDC 120
           +AAE ++KKM TV NRS WIPRFE EDF+E+F VRGPAKEE  A     KK KV++ ED 
Sbjct: 61  AAAEMRKKKMKTVENRSAWIPRFEREDFDEEFQVRGPAKEEAAA----AKKKKVKNEEDI 120

[Close]

BLAST of Sed0014576 vs. ExPASy TrEMBL
Match: A0A6J1DAZ5 (protein NIM1-INTERACTING 1 OS=Momordica charantia OX=3673 GN=LOC111019022 PE=3 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 8.1e-21
Identity = 72/134 (53.73%), Postives = 84/134 (62.69%), Query Frame = 0


Query: 1   MEKQSLPAPAPEVATVAADGEEEMKMETFFALIRNFKEMRDRRREEL--MIGCESAAEKK 60
           ME ++L   A E      + EEEMKME FFAL+RNFKEMRDRRR+EL  MIG     EKK
Sbjct: 1   MENENLRPAAAE------EEEEEMKMEAFFALLRNFKEMRDRRRKELTTMIGDGGETEKK 60

Query: 61  RKKMTTVPNRSTWIPRFEMEDFEEDFPVRGP----------AKEETPAMMME---KKKTK 120
           RKKM T P  STWIP F  EDF+EDF VRGP           KE+TP   +     KK  
Sbjct: 61  RKKMKTAP--STWIPTFLREDFDEDFQVRGPPPVLPKPCNLIKEDTPPPPLPAAVAKKKN 120

[Close]

BLAST of Sed0014576 vs. ExPASy TrEMBL
Match: A0A6J1JVD5 (uncharacterized protein LOC111488189 OS=Cucurbita maxima OX=3661 GN=LOC111488189 PE=3 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 7.6e-19
Identity = 66/125 (52.80%), Postives = 84/125 (67.20%), Query Frame = 0


Query: 11  PEVATVAADGEEEMKMETFFALIRNFKEMRDRRREELM--IGCESAAEKKRKKM---TTV 70
           P   T+A + EEE++ME F+AL+RNFKE+RDR R+E++   G E+AAEK RK+M    TV
Sbjct: 8   PPRETIAEEEEEEVEMEKFYALVRNFKEIRDRWRKEVVNGEGDETAAEKTRKRMKTTETV 67

Query: 71  PNRSTWIPRFEMEDFEEDFPVRGPA----------KEETP-AMMMEKKKTKVESGEDCLD 120
            N+S+WI RFE EDF+ED  V G A          KE+TP A    KK+ KV SG DCLD
Sbjct: 68  QNQSSWILRFEREDFDEDLQVGGAAVELPKHCCLVKEDTPVAAAPLKKEKKVASGVDCLD 127

[Close]

BLAST of Sed0014576 vs. ExPASy TrEMBL
Match: A0A0A0K5V7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G414420 PE=3 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 5.1e-15
Identity = 62/134 (46.27%), Postives = 80/134 (59.70%), Query Frame = 0


Query: 9   PAPEVATVAADGEEEMKMETFFALIRNFKEMRDRRREELMIGCE------SAAEKKRKKM 68
           P+P+  T A D  E+ +ME FFAL+R+ KEMRD+RR+EL IG E      +A EK+RK+M
Sbjct: 8   PSPD--TTAEDSLEDEEMERFFALVRSLKEMRDQRRKELNIGQEEGEEEIAAGEKRRKRM 67

Query: 69  TT---VPNRSTWIPRFEMEDFEEDF---------PVRGPAKEETPAMMME-----KKKTK 120
                V NRSTWIP+FE EDF+E+F         P     K +T A         K K K
Sbjct: 68  RAAEMVENRSTWIPKFEREDFDEEFQALSTLPPNPCCNLVKRDTTAASTTTTAPMKNKKK 127

[Close]

BLAST of Sed0014576 vs. TAIR 10
Match: AT1G02450.1 (NIM1-interacting 1 )

HSP 1 Score: 49.3 bits (116), Expect = 2.5e-06
Identity = 38/106 (35.85%), Postives = 56/106 (52.83%), Query Frame = 0


Query: 21  EEEMKMETFFALIRNFKEMRDRRREELMIGCESAAEKKRKKMTTVPNRSTWIPRFEMEDF 80
           EEE K++TFF LI++++E R RRREEL    E++   +RK           +P F+ EDF
Sbjct: 41  EEEKKIDTFFKLIKHYQEARKRRREEL---AENSGVVRRKS-NGGERSGIVVPAFQPEDF 100

Query: 81  EEDFPVRGPA-------KEETPAMMMEKKKTKVESGEDCLDLNLAL 120
            +      P        KEE   +  E+ +T+  + +  LDLNLAL
Sbjct: 101 SQCRTGLKPPLMFVSDHKEENTKVEQEEDQTEERNEDKALDLNLAL 142

The following BLAST results are available for this feature:

BLAST of Sed0014576 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6593261.1	4.7e-31	63.78	hypothetical protein SDJN03_12737, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7025612.1	1.4e-30	62.79	hypothetical protein SDJN02_12109, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_023514605.1	3.0e-30	63.49	protein NIM1-INTERACTING 1 [Cucurbita pepo subsp. pepo]	[more]
XP_022960173.1	8.9e-30	62.60	protein NIM1-INTERACTING 1 [Cucurbita moschata]	[more]
XP_023004697.1	3.2e-27	60.63	protein NIM1-INTERACTING 1 [Cucurbita maxima]	[more]

BLAST of Sed0014576 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FNZ5	3.5e-05	35.85	Protein NIM1-INTERACTING 1 OS=Arabidopsis thaliana OX=3702 GN=NIMIN-1 PE=1 SV=1	[more]

BLAST of Sed0014576 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H831	4.3e-30	62.60	protein NIM1-INTERACTING 1 OS=Cucurbita moschata OX=3662 GN=LOC111460992 PE=3 SV...	[more]
A0A6J1KR57	1.5e-27	60.63	protein NIM1-INTERACTING 1 OS=Cucurbita maxima OX=3661 GN=LOC111497915 PE=3 SV=1	[more]
A0A6J1DAZ5	8.1e-21	53.73	protein NIM1-INTERACTING 1 OS=Momordica charantia OX=3673 GN=LOC111019022 PE=3 S...	[more]
A0A6J1JVD5	7.6e-19	52.80	uncharacterized protein LOC111488189 OS=Cucurbita maxima OX=3661 GN=LOC111488189...	[more]
A0A0A0K5V7	5.1e-15	46.27	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G414420 PE=3 SV=1	[more]

BLAST of Sed0014576 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G02450.1	2.5e-06	35.85	NIM1-interacting 1	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR031425	NPR1/NH1-interacting protein	PFAM	PF15699	NPR1_interact	coord: 20..106 e-value: 6.6E-18 score: 65.3
IPR031425	NPR1/NH1-interacting protein	PANTHER	PTHR33669	PROTEIN NEGATIVE REGULATOR OF RESISTANCE	coord: 17..119
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	PANTHER	PTHR33669:SF1	NPR1/NH1-INTERACTING PROTEIN-RELATED	coord: 17..119

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0014576.1	Sed0014576.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010112	regulation of systemic acquired resistance