Sed0014552 (gene) Chayote v1

Overview


Name	Sed0014552
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Unknown protein
Location	LG12: 25968836 .. 25969373 (+)
RNA-Seq Expression	Sed0014552
Synteny	Sed0014552

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCTCCATATTGCACCAATTTTTCATATATTTATACCTCTCCCTCTTGCTTTGTGATTTTTCTGTGCACACATCAATGCCAGGATCGATGAGGTGGTTCGTGGTGGTTCTTCTTGCAATGCTCGCGAGAGCTCAAGACAGCGGAGAACTCGCACCGTTGCCTGCTATGGATGCTGGCACTGGATTTCAGCTCACATTTTCAGCTCAAACCCTTATGCTATCAACGTTCATCTGTCTTCTTGTGCTTCTTTGCCATTAGATCTCACATTCTTCCTGCACTACGATTGGATTTTGATCGTTTCTATGTATATGTTGTAATGGTGCTACCCTTTTTTTCTTTTTCTTTCTTTTTGGCCGTGATATTATGGATTATATTTCGGTGGACTGGATCATACATGTTTTTCATATATGTAATATGAGGTATTATATCAATAAGACCCCGTTTGATAACCATTTTATTTTTCGTTTTTTGTTTATGAAATTTAAGCCTACAACAACTACCTTACTATACATTTTTCTTTATTTGGATATCTACA

mRNA sequence

ATGATCTCCATATTGCACCAATTTTTCATATATTTATACCTCTCCCTCTTGCTTTGTGATTTTTCTGTGCACACATCAATGCCAGGATCGATGAGGTGGTTCGTGGTGGTTCTTCTTGCAATGCTCGCGAGAGCTCAAGACAGCGGAGAACTCGCACCGTTGCCTGCTATGGATGCTGGCACTGGATTTCAGCTCACATTTTCAGCTCAAACCCTTATGCTATCAACGTTCATCTGTCTTCTTGTGCTTCTTTGCCATTAGATCTCACATTCTTCCTGCACTACGATTGGATTTTGATCGTTTCTATGTATATGTTGTAATGGTGCTACCCTTTTTTTCTTTTTCTTTCTTTTTGGCCGTGATATTATGGATTATATTTCGGTGGACTGGATCATACATGTTTTTCATATATGTAATATGAGGTATTATATCAATAAGACCCCGTTTGATAACCATTTTATTTTTCGTTTTTTGTTTATGAAATTTAAGCCTACAACAACTACCTTACTATACATTTTTCTTTATTTGGATATCTACA

Coding sequence (CDS)

ATGATCTCCATATTGCACCAATTTTTCATATATTTATACCTCTCCCTCTTGCTTTGTGATTTTTCTGTGCACACATCAATGCCAGGATCGATGAGGTGGTTCGTGGTGGTTCTTCTTGCAATGCTCGCGAGAGCTCAAGACAGCGGAGAACTCGCACCGTTGCCTGCTATGGATGCTGGCACTGGATTTCAGCTCACATTTTCAGCTCAAACCCTTATGCTATCAACGTTCATCTGTCTTCTTGTGCTTCTTTGCCATTAG

Protein sequence

MISILHQFFIYLYLSLLLCDFSVHTSMPGSMRWFVVVLLAMLARAQDSGELAPLPAMDAGTGFQLTFSAQTLMLSTFICLLVLLCH

Homology

[Close]

BLAST of Sed0014552 vs. NCBI nr
Match: KGN66478.1 (hypothetical protein Csa_007521 [Cucumis sativus])

HSP 1 Score: 65.1 bits (157), Expect = 3.4e-07
Identity = 39/72 (54.17%), Postives = 48/72 (66.67%), Query Frame = 0


Query: 18 LCDFSVHTSMPGSMRWFVVVLLAML---ARAQDSGELAPLPAMDAGTGFQLTFSAQTLML 77
          +  FS+H +     +W  VV L +L   ARAQD   LAPLPAMDAGTGFQ+TFS   ++L
Sbjct: 1  MAGFSIHRA-----KWLFVVTLVLLLAVARAQDGAGLAPLPAMDAGTGFQVTFSNGGILL 60

Query: 78 STFICLLVLLCH 87
          S FI L+VLL H
Sbjct: 61 SMFISLVVLLLH 67

[Close]

BLAST of Sed0014552 vs. NCBI nr
Match: KAA0059092.1 (hypothetical protein E6C27_scaffold601G00030 [Cucumis melo var. makuwa] >TYK18840.1 hypothetical protein E5676_scaffold204G00320 [Cucumis melo var. makuwa])

HSP 1 Score: 64.7 bits (156), Expect = 4.5e-07
Identity = 40/73 (54.79%), Postives = 48/73 (65.75%), Query Frame = 0


Query: 17 LLCDFSVHTSMPGSMRWFVVVLLAML---ARAQDSGELAPLPAMDAGTGFQLTFSAQTLM 76
          L+  FS+H +M     W  VV L +L   ARAQD   LAPLPAMDAGTGFQ+TFS   ++
Sbjct: 13 LMAGFSIHRAM-----WLFVVTLVLLLAVARAQDGAGLAPLPAMDAGTGFQVTFSNGGIL 72

Query: 77 LSTFICLLVLLCH 87
          LS FI L+ LL H
Sbjct: 73 LSMFIYLVALLWH 80

[Close]

BLAST of Sed0014552 vs. ExPASy TrEMBL
Match: A0A0A0LXI4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G613500 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.7e-07
Identity = 39/72 (54.17%), Postives = 48/72 (66.67%), Query Frame = 0


Query: 18 LCDFSVHTSMPGSMRWFVVVLLAML---ARAQDSGELAPLPAMDAGTGFQLTFSAQTLML 77
          +  FS+H +     +W  VV L +L   ARAQD   LAPLPAMDAGTGFQ+TFS   ++L
Sbjct: 1  MAGFSIHRA-----KWLFVVTLVLLLAVARAQDGAGLAPLPAMDAGTGFQVTFSNGGILL 60

Query: 78 STFICLLVLLCH 87
          S FI L+VLL H
Sbjct: 61 SMFISLVVLLLH 67

[Close]

BLAST of Sed0014552 vs. ExPASy TrEMBL
Match: A0A5D3D5P4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold204G00320 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 2.2e-07
Identity = 40/73 (54.79%), Postives = 48/73 (65.75%), Query Frame = 0


Query: 17 LLCDFSVHTSMPGSMRWFVVVLLAML---ARAQDSGELAPLPAMDAGTGFQLTFSAQTLM 76
          L+  FS+H +M     W  VV L +L   ARAQD   LAPLPAMDAGTGFQ+TFS   ++
Sbjct: 13 LMAGFSIHRAM-----WLFVVTLVLLLAVARAQDGAGLAPLPAMDAGTGFQVTFSNGGIL 72

Query: 77 LSTFICLLVLLCH 87
          LS FI L+ LL H
Sbjct: 73 LSMFIYLVALLWH 80

The following BLAST results are available for this feature:

BLAST of Sed0014552 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN66478.1	3.4e-07	54.17	hypothetical protein Csa_007521 [Cucumis sativus]	[more]
KAA0059092.1	4.5e-07	54.79	hypothetical protein E6C27_scaffold601G00030 [Cucumis melo var. makuwa] >TYK1884...	[more]

BLAST of Sed0014552 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0014552 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LXI4	1.7e-07	54.17	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G613500 PE=4 SV=1	[more]
A0A5D3D5P4	2.2e-07	54.79	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Sed0014552 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33659	PROTEIN, PUTATIVE-RELATED-RELATED	coord: 33..86
None	No IPR available	PANTHER	PTHR33659:SF10	SUBFAMILY NOT NAMED	coord: 33..86

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0014552.1	Sed0014552.1	mRNA