Sed0014527 (gene) Chayote v1

Overview


Name	Sed0014527
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Reverse transcriptase
Location	LG05: 11071620 .. 11076004 (-)
RNA-Seq Expression	Sed0014527
Synteny	Sed0014527

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATATCGTATTGTACCTCGGTTGGGGATTCTTACTGAGCAATTCGTTGCTCACCCTTATTACTGTGGTTTTTTCCACAGGTAACCAAGTTGCGAGACAGGATGGCTGAAGGAGGAGCTGTGATCATGGGGCCTAGTCTTCCAACTCTGATTTTTGTATTATGACTCTTTATGTTTTGTTTCCCCTTAATGCATGTAGCTGGGCACGGAGCCCTAGGATGTTTTGTAAATGTTTTGGGGATTCCAGCATTTTGTATCTGAACAGGTTTTGAATGGTTTTTAGTAAATCTCTGATCAGAGTAAACTTTGGAAATGTATTTATCTTGGAACAGGTGTTTGGAAACAGGGACGGAGTTCAGGAAATTGTCTAGTTTTTAAAGGGGTTATTTTGAATGTTTTGTTTTTAATTGGAATCCGAAATCATGTCTGTTTAATGTCCTTTACTTTGAATGCATGCATTGGGGTAAGGGCCCATTTAGTGCCCCATTCGGGTCGGTCTCTTACAGTTGGTATCAGAACTTAGAGTCATAAAATCTGTAGTTTGACCTTTTGTTGTAGGTCATTTTCCTATGATCACTAGCTCTCCGACAGTTATCAGGTACGCCTAAGTTTACTATTTGTTGTTTAAAAAGGGTTAAGAATTTACAATACCTGTCATCTAGTGTATGCCTTGTGTAGTGTTGTGGAGCGAAGACGAGCAGGTTCTGACTCGTTATTTGTTTGGGTTTAGAGCGCCATCATGCCAACTTCCCGCAGTGTGTGATGTATGTTGTGGCTTGTTGTGGTATCCAGATAGATTCGGATGCCCTGGGACATCGTTCCAGAGGGAGGTAGAGTTTGGACTCCCATAGGCCAATTATGGCCCAGTTGATGGTTTTCCCCTAGTGAGAGGGTGGAGGTGCTTTGCCTTGGAATGCCACTCCAAGAGAGGAATTAGCTGTGGTTGTGCTTAAGTGGATGTTTGTGGAGCAGGTCCCCGTGTGGACTAGCCTGGGTAGCTCAAGTGCTGATCTTGAGCCTTGATAGATTAATTGGTTGCCCAGAGAGTGGTTGCAAAGTTGGTAGCCTTCAAGGAGGTTGATGAGGCATCTTGGTGCTTCGGTAAAGTGTTGTTGTTTGCGGCCAAGAAGCGGAACCCGTGATTAAGGGTGCGACAAGCGGTGTTCCTCTGATTTGGATCCGTTGGTAGTTTCCTCAGTTGTTTGGTAAAAATGAACACTCTTCTTTTGGTAAGCCCTAGAGTAGGGCTAGCTGCTGCATGTTGAGAGAGCCGGCCAGAGATTGTTGAGCATCATGTGGAGATGCAAGAGTAGGCCGTGAGCCTTCAGCTTGATGAGATGCCTTAGGCATGGTTGTTGGAGTTGAGCCCTTGTATGCCGAGCCAGAGTTCGTGTCACTTGAGGTTGTGACCTTGTTGGCCCCGTTGGTAGTAAGAAGTGGATTTGGTAGTAGTGGCACTTGAGGTGCATTGGTTGGTGTGCCGCTTTGGCACTAAATCTGGTTAAGGCCTGAGTTTGGCATGGGCATAGCAGATGGTTCTATGTCGTTCGGAGTTTAGCGTACTCCTTTATCCTTGGATCTATTTATGGTAGTTGCACCTGTGTAGGTCGTGCAAAAGGGCTAGTTCAGTGGTAATCAAAAGATTTCAAGCGAAAGGAGTGTTCGAGAGGAGCCGGGCCTTTTCCCAGTGTTACTGGAGGTTGAGTAAGTCAAGCAGGTTGACGGTTGGTAAGTGTTAATGCGCGTGCATCTCACGCTAGTGGTAAGGCCAAGAGATCTTTGTGGTTGGTAGTGCGGTCAACTACCTTCGAGTGCCTAAATCTCAGGAGAGTTGAGCATCGTAGAAGCAAGTTGGTTCCAGCTGAGGGACCATGAGTTGGATGCCTATAAGGTGAGTAGGATGCCTTGTGAGAGGAATGGGATGCCTTATGGGTAAGCACCCTTGGTAGAGGGTTGGTATAAGTAAGTTTGGTTTGGCATGATTATGCTTTGGTAGAGCAAGGTTGCCACAGCTTCGAGCATCGTGTGGAGATGGAACTTTGGGTGTTCCATCGATTGGTTGTATCTTTGCCAGGAGCTAGTGTGGCTTTTGGGAAAAGCATTTGTTAGTCTTGGATCGCTAAATGAAGGTTGGGAGTTGTGCACACAAGTGTGTTTTGTGTGGTTCGTTCTGTGGCGAGAATTTCAGATCCATGTAGGGTTTGCTTTGGGGATCTGGTGCTCAGTTCTTGGAAAAGTTGGACTCCAGGTGGATGTTGTAAGGCTTTAGTGAGATGGTAAGGATACCATGCTCGTGATATCAGGTTGTTGCTTAGGCAAGATTTGTTAAGTGGACCTAAGCTTGGTTGGCGGATCTTCTTGTTGACCGTCATGACTGAGAGAGTTGTTCGGATCCTTCTTTGGGTAGATGTTATGTTGTGGTGGACGTCTGAGTAGGAGGATGACGCATTCGGTAGCGTTTCGGGTCCTCTTGGTTTCCAAGGAGTTGGAGTTGGCCAGCATGATTGTGTTGCTGGAAAAAGAAGTTGTTGTTGTTCAGGCAATTGGCTGTTAGTCCGTTAGTTGGCAGTGGGTGTTGAAGGTTGCCGGAGAACCCTAGGTTGTGAAGAACCTCTCTAGAGCTCAATCAGGCCCTGATAGTGAGTTTCAGTTGGCAAGCTGGAGCCGTGTAGTTTGTAGCCTCGGGTGAGTTCCTGGCAGTCTTGGTAGCCTAGCAAGCTGGTATTTGTTTGGAGTGGAGTCCGGATTGGTTCCGGTATGGTGACAAGTTGATGCTTGGTGTTGACCAAGGTGTGGATTGAAATTGCTAGAAGTCAGTTTGCTCGTGGGGCGAATGGTTCGTGCCCTATTGGTTGTCTTCCTGTTTCTAGGAAAGTTGAGAGTTGCCCCGTTGGTATTTGGAAGTTCAGTTCGTGGTGGACCCCTGTTGCTACCCCGTAAGATTTTGATCTTCTGGATTTAGTGGAGCAAGACAATGAGTGTAAGTGGAGCTCCTTGTTCTTCGGTTGTCTGCTCGTAGGAGCCGTTTCTTTCTAGGTTTGGCAGGTTACTACCGTCGGTTTGTTAAGGATTTTTCCGCCATAGCCTGGCCCCTCACTCGTCTGACGAGGAAGGGTGTCGAGTTTGTTTGGGACGGTAGGTGTGATGAGAGCTTTGCCAGGCTCAAGCGCAGTTTGACTTCAGCACCAGTGTTGGCAGTCCCGGAGGGGACAGGTGGTTTGGTGGTCTACAACGATGCTTCTAAGTTCGGGTTGGGTTGTGTATTGATGCAGCACGGGAAGGTCATTGCTTATGCTTCCCGTCAGCTGAAGCCATATGAGCAGAACTATCCGACTCATGATATGGAATTGGCAGCAGTGGTGTTTGCACGGAAGATTTGGAGGCATTACCTGTATGGTGAGCGGATTCAGATGTTTTCCGATCACCAGAGCCTCAAGTATCTGTTTACTCAGAAGGAATTCAATATGAGGCAGAGGAGATGGTTAGAGTTGGTGAAGGATTATGACTGCCAGATTTTGTACCATCCGGGTAAAGCCAATGTTGTAGCTGATACTTTGAGTAGGAAGACGTCGCACTCCGCGGTATTGTTGAGTCCTCGGCCAGATTTGCGTGAGAGTTTGAGCGGTCGTGGTTGCGCGATTGTTGGGTGAGGTTACTGTCAGAGTAGCTCAGTTGACAACGGGTTATTGATAGTCAGCTGAGTGACCCCGCACTTAAGAAATTTGGTGACAGAGAGTTAGTGCTGATGGAGATTTTGACTTTGTGTATTCACCAGACAGTGGGCTGACGTACAGAGGCAGGTTGTATGTTCCGGATGTTGCAGGATTGCGAGCAGAGTTGCTCTCGAGGCCCACGATTCTCCGTTTGCTTGGCACCCGGAGGTACCAAGATGTATCGGGATCTTAAGCGAGACATACGGTGGATGGGTATGAAGAGAGATGTTGCGGAGTTTGTCGATCGATGTCTCACTTGTTAGCAAGTGAAGGCACCAGGCGAGACCAGCCCGGTTTGTGTTGGCCGGCTGAGTGTACCTCGGTGGAAATGGGAAGAGATCTCCATGGACTTTATTTCTGGTTTGTCGAGGACTTCGAGGAAGTTCTCTCAGATTTGGGTGATAGTCGATCGATTGACTAAGAGCGCACACTTCATTCCCGGTAGAGACACTTATACCGTGGAACAGTGGGCGCAGTTGTTTTTGGAACAAATTGTTCGTTATCATGGTGTATTACTGAGGATTGTGTCGACCGTGATTCGAGGGCTTGTGTGTTGGATTTCGGAGCGAGTTGGGACCAGATTCAGATCGATGGAGTTTGCAAATAACAACAGTTATCGGTCGACGATTCAGATGGCTCCATTCGAGGCTTTGTATGGTAAGCGTTGCTGA

mRNA sequence

ATGTATATCGTATTGTACCTCGGTTGGGGATTCTTACTGAGCAATTCGTTGCTCACCCTTATTACTGTGGTTTTTTCCACAGGTCATTTTCCTATGATCACTAGCTCTCCGACAGTTATCAGAGCGCCATCATGCCAACTTCCCGCAGTGTGTGATGTATGTTGTGGCTTGTTGTGGTATCCAGATAGATTCGGATGCCCTGGGACATCGTTCCAGAGGGAGAGAGTGGTTGCAAAGTTGGTAGCCTTCAAGGAGGTTGATGAGGCATCTTGGTGCTTCGGTAAAGTGTTGTTGTTTGCGGCCAAGAAGCGGAACCCGTCGTGCAAAAGGGCTAGTTCAGTGGTAATCAAAAGATTTCAAGCGAAAGGAGTGTTCGAGAGGAGCCGGGCCTTTTCCCAGTGTTACTGGAGGTTGAGTAAGTCAAGCAGGTTGACGGTTGGAGAGTTGAGCATCGTAGAAGCAAGTTGGTTCCAGCTGAGGGACCATGAGTTGGATGCCTATAAGAGCAAGGTTGCCACAGCTTCGAGCATCGTGTGGAGATGGAACTTTGGGTGTTCCATCGATTGGTTGTATCTTTGCCAGGAGCTAGTGTGGCTTTTGGGAAAAGCATTTGTTAGTCTTGGATCGCTAAATGAAGGTTGGGAGTTGTGCACACAAGTGTGTTTTGTGTGGTTCGTTCTGTGGCGAGAATTTCAGATCCATGTAGGGTTTGCTTTGGGGATCTGGTGCTCAGTTCTTGGAAAAGTTGGACTCCAGATGTTATGTTGTGGTGGACGTCTGAGTAGGAGGATGACGCATTCGGTAGCGTTTCGGGTCCTCTTGGTTTCCAAGGAGTTGGAGTTGGCCAGCATGATTGTGTTGCTGGAAAAAGAAGTGTGGATTGAAATTGCTAGAAGTCAGTTTGCTCGTGGGGCGAATGGTTCGTGCCCTATTGGTTGTCTTCCTGTTTCTAGGAAAGTTGAGAGTTGCCCCGTTGGTTACTACCGTCGGTTTGTTAAGGATTTTTCCGCCATAGCCTGGCCCCTCACTCGTCTGACGAGGAAGGGTGTCGAGTTTGTTTGGGACGGTAGGTGTGATGAGAGCTTTGCCAGGCTCAAGCGCAGTTTGACTTCAGCACCAGTGTTGGCAGTCCCGGAGGGGACAGGTGGTTTGGTGGTCTACAACGATGCTTCTAAGTTCGGGTTGGGTTGTGTATTGATGCAGCACGGGAAGGTCATTGCTTATGCTTCCCGTCAGCTGAAGCCATATGAGCAGAACTATCCGACTCATGATATGGAATTGGCAGCAGTGGTGTTTGCACGGAAGATTTGGAGGCATTACCTGTATGGTGAGCGGATTCAGATGTTTTCCGATCACCAGAGCCTCAAGTATCTGTTTACTCAGAAGGAATTCAATATGAGGCAGAGGAGATGGTTAGAGTTGGTGAAGGATTATGACTGCCAGATTTTGTACCATCCGGGTAAAGCCAATGTTGTAGCTGATACTTTGAGTAGGAAGACGTCGCACTCCGCGGTATTGTTGAGTCCTCGGCCAGATTTGCGTGAGAGTTTGAGCGGTCGTGGTTGCGCGATTGTTGGACAGTGGGCTGACGTACAGAGGCAGGTTGTATGTTCCGGATGTTGCAGGATTGCGAGCAGAGTTGCTCTCGAGGCCCACGATTCTCCGTTTGCTTGGCACCCGGAGCAAGTGAAGGCACCAGGCGAGACCAGCCCGGTTTGTGTTGGCCGGCTGAGTGTACCTCGGTGGAAATGGGAAGAGATCTCCATGGACTTTATTTCTGGTTTGTCGAGGACTTCGAGGAAGTTCTCTCAGATTTGGGTGATAGTCGATCGATTGACTAAGAGCGCACACTTCATTCCCGGTAGAGACACTTATACCGTGGAACAGTGGGCGCAGTTGTTTTTGGAACAAATTGTTCGTTATCATGGTGTATTACTGAGGATTGTGTCGACCGTGATTCGAGGGCTTGTGTGTTGGATTTCGGAGCGAGTTGGGACCAGATTCAGATCGATGGAGTTTGCAAATAACAACAGTTATCGGTCGACGATTCAGATGGCTCCATTCGAGGCTTTGTATGGTAAGCGTTGCTGA

Coding sequence (CDS)

ATGTATATCGTATTGTACCTCGGTTGGGGATTCTTACTGAGCAATTCGTTGCTCACCCTTATTACTGTGGTTTTTTCCACAGGTCATTTTCCTATGATCACTAGCTCTCCGACAGTTATCAGAGCGCCATCATGCCAACTTCCCGCAGTGTGTGATGTATGTTGTGGCTTGTTGTGGTATCCAGATAGATTCGGATGCCCTGGGACATCGTTCCAGAGGGAGAGAGTGGTTGCAAAGTTGGTAGCCTTCAAGGAGGTTGATGAGGCATCTTGGTGCTTCGGTAAAGTGTTGTTGTTTGCGGCCAAGAAGCGGAACCCGTCGTGCAAAAGGGCTAGTTCAGTGGTAATCAAAAGATTTCAAGCGAAAGGAGTGTTCGAGAGGAGCCGGGCCTTTTCCCAGTGTTACTGGAGGTTGAGTAAGTCAAGCAGGTTGACGGTTGGAGAGTTGAGCATCGTAGAAGCAAGTTGGTTCCAGCTGAGGGACCATGAGTTGGATGCCTATAAGAGCAAGGTTGCCACAGCTTCGAGCATCGTGTGGAGATGGAACTTTGGGTGTTCCATCGATTGGTTGTATCTTTGCCAGGAGCTAGTGTGGCTTTTGGGAAAAGCATTTGTTAGTCTTGGATCGCTAAATGAAGGTTGGGAGTTGTGCACACAAGTGTGTTTTGTGTGGTTCGTTCTGTGGCGAGAATTTCAGATCCATGTAGGGTTTGCTTTGGGGATCTGGTGCTCAGTTCTTGGAAAAGTTGGACTCCAGATGTTATGTTGTGGTGGACGTCTGAGTAGGAGGATGACGCATTCGGTAGCGTTTCGGGTCCTCTTGGTTTCCAAGGAGTTGGAGTTGGCCAGCATGATTGTGTTGCTGGAAAAAGAAGTGTGGATTGAAATTGCTAGAAGTCAGTTTGCTCGTGGGGCGAATGGTTCGTGCCCTATTGGTTGTCTTCCTGTTTCTAGGAAAGTTGAGAGTTGCCCCGTTGGTTACTACCGTCGGTTTGTTAAGGATTTTTCCGCCATAGCCTGGCCCCTCACTCGTCTGACGAGGAAGGGTGTCGAGTTTGTTTGGGACGGTAGGTGTGATGAGAGCTTTGCCAGGCTCAAGCGCAGTTTGACTTCAGCACCAGTGTTGGCAGTCCCGGAGGGGACAGGTGGTTTGGTGGTCTACAACGATGCTTCTAAGTTCGGGTTGGGTTGTGTATTGATGCAGCACGGGAAGGTCATTGCTTATGCTTCCCGTCAGCTGAAGCCATATGAGCAGAACTATCCGACTCATGATATGGAATTGGCAGCAGTGGTGTTTGCACGGAAGATTTGGAGGCATTACCTGTATGGTGAGCGGATTCAGATGTTTTCCGATCACCAGAGCCTCAAGTATCTGTTTACTCAGAAGGAATTCAATATGAGGCAGAGGAGATGGTTAGAGTTGGTGAAGGATTATGACTGCCAGATTTTGTACCATCCGGGTAAAGCCAATGTTGTAGCTGATACTTTGAGTAGGAAGACGTCGCACTCCGCGGTATTGTTGAGTCCTCGGCCAGATTTGCGTGAGAGTTTGAGCGGTCGTGGTTGCGCGATTGTTGGACAGTGGGCTGACGTACAGAGGCAGGTTGTATGTTCCGGATGTTGCAGGATTGCGAGCAGAGTTGCTCTCGAGGCCCACGATTCTCCGTTTGCTTGGCACCCGGAGCAAGTGAAGGCACCAGGCGAGACCAGCCCGGTTTGTGTTGGCCGGCTGAGTGTACCTCGGTGGAAATGGGAAGAGATCTCCATGGACTTTATTTCTGGTTTGTCGAGGACTTCGAGGAAGTTCTCTCAGATTTGGGTGATAGTCGATCGATTGACTAAGAGCGCACACTTCATTCCCGGTAGAGACACTTATACCGTGGAACAGTGGGCGCAGTTGTTTTTGGAACAAATTGTTCGTTATCATGGTGTATTACTGAGGATTGTGTCGACCGTGATTCGAGGGCTTGTGTGTTGGATTTCGGAGCGAGTTGGGACCAGATTCAGATCGATGGAGTTTGCAAATAACAACAGTTATCGGTCGACGATTCAGATGGCTCCATTCGAGGCTTTGTATGGTAAGCGTTGCTGA

Protein sequence

MYIVLYLGWGFLLSNSLLTLITVVFSTGHFPMITSSPTVIRAPSCQLPAVCDVCCGLLWYPDRFGCPGTSFQRERVVAKLVAFKEVDEASWCFGKVLLFAAKKRNPSCKRASSVVIKRFQAKGVFERSRAFSQCYWRLSKSSRLTVGELSIVEASWFQLRDHELDAYKSKVATASSIVWRWNFGCSIDWLYLCQELVWLLGKAFVSLGSLNEGWELCTQVCFVWFVLWREFQIHVGFALGIWCSVLGKVGLQMLCCGGRLSRRMTHSVAFRVLLVSKELELASMIVLLEKEVWIEIARSQFARGANGSCPIGCLPVSRKVESCPVGYYRRFVKDFSAIAWPLTRLTRKGVEFVWDGRCDESFARLKRSLTSAPVLAVPEGTGGLVVYNDASKFGLGCVLMQHGKVIAYASRQLKPYEQNYPTHDMELAAVVFARKIWRHYLYGERIQMFSDHQSLKYLFTQKEFNMRQRRWLELVKDYDCQILYHPGKANVVADTLSRKTSHSAVLLSPRPDLRESLSGRGCAIVGQWADVQRQVVCSGCCRIASRVALEAHDSPFAWHPEQVKAPGETSPVCVGRLSVPRWKWEEISMDFISGLSRTSRKFSQIWVIVDRLTKSAHFIPGRDTYTVEQWAQLFLEQIVRYHGVLLRIVSTVIRGLVCWISERVGTRFRSMEFANNNSYRSTIQMAPFEALYGKRC

Homology

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BLAST of Sed0014527 vs. NCBI nr
Match: KAA0056702.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 434.1 bits (1115), Expect = 2.3e-117
Identity = 233/467 (49.89%), Postives = 286/467 (61.24%), Query Frame = 0


Query: 325 VGYYRRFVKDFSAIAWPLTRLTRKGVEFVWDGRCDESFARLKRSLTSAPVLAVPEGTGGL 384
           VGYYRRFV++FS IA PLT+LTRKG  FVW   C++SF  LK+ L +APV+ VP+G+G  
Sbjct: 323 VGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVITVPDGSGSF 382

Query: 385 VVYNDASKFGLGCVLMQHGKVIAYASRQLKPYEQNYPTHDMELAAVVFARKIWRHYLYGE 444
           V+Y+DASK GLGCVLMQ GKV+AYASRQLK +EQNYPTHD+ELAAVVFA KIWRHYLYGE
Sbjct: 383 VIYSDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGE 442

Query: 445 RIQMFSDHQSLKYLFTQKEFNMRQRRWLELVKDYDCQILYHPGKANVVADTLSRKTSHSA 504
           +IQ+F+DH+SLKY FTQKE NMRQRRWLELVKDYDC+ILYHPGKANVVAD LSRK SHSA
Sbjct: 443 KIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSA 502

Query: 505 VL-----------------------------LSPRPDLRESL-----------SGRGCAI 564
            L                             L+ +P LR+ +             RG A 
Sbjct: 503 ALITRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAE 562

Query: 565 VGQWAD----------VQRQVVCSGCCRIASRVALEAHDSPFAWHP-------------- 624
            GQ  +           +R +       + + +  EAH SPF+ HP              
Sbjct: 563 AGQAVEFSLSSDGGLLFERCLCVPSDSAVKTELLSEAHSSPFSMHPGSTKMYQDLKRVYW 622

Query: 625 ------------------EQVKAPGETSPVCVGRLSVPRWKWEEISMDFISGLSRTSRKF 684
                             +QVKAP +     +  LS+P WKWE +SMDFI+GL RT R F
Sbjct: 623 WRNMKREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGF 682

Query: 685 SQIWVIVDRLTKSAHFIPGRDTYTVEQWAQLFLEQIVRYHGVLLRIV--------STVIR 697
           + IW +VDRLTKSAHF+PG+ TYT  +WAQL++ +IVR HGV + IV        S   +
Sbjct: 683 TVIWAVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWK 742

[Close]

BLAST of Sed0014527 vs. NCBI nr
Match: KAA0056806.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 432.6 bits (1111), Expect = 6.6e-117
Identity = 224/425 (52.71%), Postives = 278/425 (65.41%), Query Frame = 0


Query: 326  GYYRRFVKDFSAIAWPLTRLTRKGVEFVWDGRCDESFARLKRSLTSAPVLAVPEGTGGLV 385
            GYYRRFV++FS IA PLT+LTRKG  FVW   C++SF  LK+ L +APVL +P+G+G  V
Sbjct: 839  GYYRRFVENFSRIAIPLTQLTRKGALFVWSKACEDSFQNLKQKLVTAPVLTIPDGSGSFV 898

Query: 386  VYNDASKFGLGCVLMQHGKVIAYASRQLKPYEQNYPTHDMELAAVVFARKIWRHYLYGER 445
            +Y+DASK GLGCVLMQ GKV+AYASRQLK +EQNYPTHD+ELAAVVFA KIWRHYLYGE+
Sbjct: 899  IYSDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEK 958

Query: 446  IQMFSDHQSLKYLFTQKEFNMRQRRWLELVKDYDCQILYHPGKANVVADTLSRKTSHSAV 505
            IQ+F+DH SLKY FTQKE NMRQRRWLELVKDYDC+ILYHPGKANVVAD LSRK SHSA 
Sbjct: 959  IQIFTDHNSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAA 1018

Query: 506  LLSPRPDLRESL-------SG--------RGCAIVGQWAD----------VQRQVVCSGC 565
            L++ +  L   L       SG        RG A  GQ  +           +R++     
Sbjct: 1019 LITRQVPLHRDLERAEIAVSGNDPYLVEKRGLAEAGQAVEFSISSDGGLLFERRLCVPSD 1078

Query: 566  CRIASRVALEAHDSPFAWHP---------EQVKAPGETSPVCVGRLSVPRWKWEEISMDF 625
              + + +  EAH SPF+ HP         ++VKAP +     +  LS+P WKWE +SMDF
Sbjct: 1079 STVKTELLSEAHSSPFSMHPGSTKMYQDLKRVKAPRQKPAGLLQPLSIPEWKWENVSMDF 1138

Query: 626  ISGLSRTSRKFSQIWVIVDRLTKSAHFIPGRDTYTVEQWAQLFLEQI------------- 685
            I+GL RT R F+ IWV+VD LTKSAHF+PG+ TYT  +WAQL++ +I             
Sbjct: 1139 ITGLPRTLRGFTVIWVVVDMLTKSAHFVPGKSTYTASKWAQLYMSEIGLQTAMGTRLDFS 1198

Query: 686  VRYHGV-------LLRIVSTVIRGLVCWISERVGTRFRSMEFANNNSYRSTIQMAPFEAL 697
              +H         L +++  ++R           +    MEFA NNSY++TI MAPFEAL
Sbjct: 1199 TAFHPQTDCQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEAL 1258

[Close]

BLAST of Sed0014527 vs. NCBI nr
Match: KAA0063718.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 429.5 bits (1103), Expect = 5.6e-116
Identity = 229/454 (50.44%), Postives = 278/454 (61.23%), Query Frame = 0


Query: 326  GYYRRFVKDFSAIAWPLTRLTRKGVEFVWDGRCDESFARLKRSLTSAPVLAVPEGTGGLV 385
            GYYRRFV++FS IA PLT+LTRK   FVW   C++SF  LK+ L +APVL VP+G+G  V
Sbjct: 1268 GYYRRFVENFSRIATPLTQLTRKEAPFVWSKVCEDSFQNLKQKLVTAPVLTVPDGSGSFV 1327

Query: 386  VYNDASKFGLGCVLMQHGKVIAYASRQLKPYEQNYPTHDMELAAVVFARKIWRHYLYGER 445
            +Y+DASK GL CVLMQ GKV+AYASRQLK +EQNYPTHD+ELAAVVFA KIWRHYLYGE+
Sbjct: 1328 IYSDASKKGLSCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEK 1387

Query: 446  IQMFSDHQSLKYLFTQKEFNMRQRRWLELVKDYDCQILYHPGKANVVADTLSRKTSHSAV 505
            IQ+F+DH+SLKY FTQKE NMRQRRWLELVKDYDC+ILYHPGKANVVAD LSRK SHSA 
Sbjct: 1388 IQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAA 1447

Query: 506  LLSPRPDLRESL----------------------------------------SGRGCAIV 565
            L++ +  L   L                                          RG A  
Sbjct: 1448 LITRQAPLHRDLERAEIAVSVGAVTIQLAQLTVQSTLRQRIIDAQSNDPYLAEKRGLAEA 1507

Query: 566  GQWAD----------VQRQVVCSGCCRIASRVALEAHDSPFAWHP--------------- 625
            GQ  +           +R++       + + +  EAH SPF+ HP               
Sbjct: 1508 GQATEFSISSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWW 1567

Query: 626  -----------------EQVKAPGETSPVCVGRLSVPRWKWEEISMDFISGLSRTSRKFS 685
                             +QVKAP +     +  LS+P WKWE +SMDFI+GL RT R F+
Sbjct: 1568 RNMKREVAEFVSRCLVCQQVKAPKQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFT 1627

Query: 686  QIWVIVDRLTKSAHFIPGRDTYTVEQWAQLFLEQIVRYHGVLLRIVS-TVIRGLVCWISE 697
             IWV+VDRLTKSAHF+PG+ TYT  +WAQL++ +IVR HGV + IVS    R    +   
Sbjct: 1628 VIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVLIVSDRDARFTSKFWKG 1687

[Close]

BLAST of Sed0014527 vs. NCBI nr
Match: KAA0032207.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 427.9 bits (1099), Expect = 1.6e-115
Identity = 231/465 (49.68%), Postives = 283/465 (60.86%), Query Frame = 0


Query: 326 GYYRRFVKDFSAIAWPLTRLTRKGVEFVWDGRCDESFARLKRSLTSAPVLAVPEGTGGLV 385
           GYYRRFV++FS IA PLT+LTRKG  FVW   C++SF  LK+ L +APVL VP+G+G  +
Sbjct: 78  GYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLATAPVLTVPDGSGSFL 137

Query: 386 VYNDASKFGLGCVLMQHGKVIAYASRQLKPYEQNYPTHDMELAAVVFARKIWRHYLYGER 445
           +Y+DASK GLGCVLMQ GKV+AYASRQLK +EQNYPTHD+ELAAVVFA KIWRHYLYGE+
Sbjct: 138 IYSDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEK 197

Query: 446 IQMFSDHQSLKYLFTQKEFNMRQRRWLELVKDYDCQILYHPGKANVVADTLSRKTSHSAV 505
           IQ+F+DH+SLKY FTQKE NMRQRRWLELVKDYDC+ILYHPGKANVVAD LSRK SHSA 
Sbjct: 198 IQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAA 257

Query: 506 L-----------------------------LSPRPDLRESL-----------SGRGCAIV 565
           L                             L+ +P LR+ +             RG A  
Sbjct: 258 LITRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEA 317

Query: 566 GQWAD----------VQRQVVCSGCCRIASRVALEAHDSPFAWHPEQVKAPGETSPVCVG 625
           GQ  +           +R++       + + +  EAH SPF+ HP  VKAP +     + 
Sbjct: 318 GQAVEFSLSSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMHP-AVKAPRQKPAGLLQ 377

Query: 626 RLSVPRWKWEEISMDFISGLSRTSRKFSQIWVIVDRLTKSAHFIPGRDTYTVEQWAQLFL 685
            LS+P WKWE +SMDFI+GL RT R F+ IWV+VDRLTKSA F+PG+ TYT  +WAQL++
Sbjct: 378 PLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAPFVPGKSTYTASKWAQLYM 437

Query: 686 EQIVRYHGVLLRIV--------STVIRGLVCWISERV----------------------- 697
            +IVR HGV + IV        S   +GL   +  R+                       
Sbjct: 438 SEIVRLHGVPVSIVSDRDARFTSKFWKGLQTTMGTRLDFSTAFHPQTDGQTERLNQVLED 497

[Close]

BLAST of Sed0014527 vs. NCBI nr
Match: KAA0059071.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 426.4 bits (1095), Expect = 4.7e-115
Identity = 232/474 (48.95%), Postives = 285/474 (60.13%), Query Frame = 0


Query: 326  GYYRRFVKDFSAIAWPLTRLTRKGVEFVWDGRCDESFARLKRSLTSAPVLAVPEGTGGLV 385
            GYYRRFV++FS IA PLT+LTRKG  FVW   C++S   LK+ L +APVL VP+G+G  V
Sbjct: 599  GYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSLQNLKQKLVTAPVLTVPDGSGSFV 658

Query: 386  VYNDASKFGLGCVLMQHGKVIAYASRQLKPYEQNYPTHDMELAAVVFARKIWRHYLYGER 445
            +Y+DAS  GLGCVLMQ GKV+AYASRQLK +EQNYPTHD+ELAAVVFA KIWRHYLYGE+
Sbjct: 659  IYSDASMKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEK 718

Query: 446  IQMFSDHQSLKYLFTQKEFNMRQRRWLELVKDYDCQILYHPGKANVVADTLSRKTSHSAV 505
            IQ+F+DH+SLKY FTQKE NMRQRRWLELVKDYDC+ILYHPGKANVVAD LSRK SHSA 
Sbjct: 719  IQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAA 778

Query: 506  L-----------------------------LSPRPDLRESL-----------SGRGCAIV 565
            L                             L+ +P LR+ +             RG A  
Sbjct: 779  LITRQAPLHRDLERAEIAVSVGAVTIQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEA 838

Query: 566  GQWAD----------VQRQVVCSGCCRIASRVALEAHDSPFAWHP---------EQVKAP 625
            GQ  +           +R++       I + +  EAH SPF+ HP         ++VKAP
Sbjct: 839  GQAVEFSLSSDGGLLFERRLCVPSDSAIKTELLSEAHSSPFSMHPGSTKMYQDLKRVKAP 898

Query: 626  GETSPVCVGRLSVPRWKWEEISMDFISGLSRTSRKFSQIWVIVDRLTKSAHFIPGRDTYT 685
             +     +  LS+P WKWE +SMDFI+GL RT + F+ IWV+VDRLTKSAHF+PG+ TYT
Sbjct: 899  RQKPAGLLQPLSIPEWKWENMSMDFITGLPRTLKGFTVIWVVVDRLTKSAHFVPGKSTYT 958

Query: 686  VEQWAQLFLEQIVRYHGVLLRIV--------STVIRGLVCWISERV-------------- 697
              +WAQL++ +IVR HGV + IV        S   +GL   +  R+              
Sbjct: 959  ASKWAQLYMSEIVRLHGVPVSIVSDRDVRFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQT 1018

[Close]

BLAST of Sed0014527 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 6.8e-32
Identity = 78/206 (37.86%), Postives = 112/206 (54.37%), Query Frame = 0


Query: 310 PIGCLPVSRKVESCPVGYYRRFVKDFSAIAWPLTRLTRKGVEF-VWDGRCDESFARLKRS 369
           PI   P   K      GYYR+F+ +F+ IA P+T+  +K ++    +   D +F +LK  
Sbjct: 434 PIPTKPKEIKAFLGLTGYYRKFIPNFADIAKPMTKCLKKNMKIDTTNPEYDSAFKKLKYL 493

Query: 370 LTSAPVLAVPEGTGGLVVYNDASKFGLGCVLMQHGKVIAYASRQLKPYEQNYPTHDMELA 429
           ++  P+L VP+ T    +  DAS   LG VL Q G  ++Y SR L  +E NY T + EL 
Sbjct: 494 ISEDPILKVPDFTKKFTLTTDASDVALGAVLSQDGHPLSYISRTLNEHEINYSTIEKELL 553

Query: 430 AVVFARKIWRHYLYGERIQMFSDHQSLKYLFTQKEFNMRQRRWLELVKDYDCQILYHPGK 489
           A+V+A K +RHYL G   ++ SDHQ L +L+  K+ N +  RW   + ++D  I Y  GK
Sbjct: 554 AIVWATKTFRHYLLGRHFEISSDHQPLSWLYRMKDPNSKLTRWRVKLSEFDFDIKYIKGK 613

Query: 490 ANVVADTLSR----------KTSHSA 505
            N VAD LSR          +T HSA
Sbjct: 614 ENCVADALSRIKLEETYLSEQTQHSA 639

[Close]

BLAST of Sed0014527 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 9.2e-29
Identity = 71/188 (37.77%), Postives = 107/188 (56.91%), Query Frame = 0


Query: 327 YYRRFVKDFSAIAWPLTRLTR-----------KGVEFVWDGRCDESFARLKRSLTSAPVL 386
           YYR+F++D++ +A PLT LTR             V    D    +SF  LK  L S+ +L
Sbjct: 367 YYRKFIQDYAKVAKPLTNLTRGLYANIKSSQSSKVPITLDETALQSFNDLKSILCSSEIL 426

Query: 387 AVPEGTGGLVVYNDASKFGLGCVLMQ----HGKVIAYASRQLKPYEQNYPTHDMELAAVV 446
           A P  T    +  DAS + +G VL Q      + IAY SR L   E+NY T + E+ A++
Sbjct: 427 AFPCFTKPFHLTTDASNWAIGAVLSQDDQGRDRPIAYISRSLNKTEENYATIEKEMLAII 486

Query: 447 FARKIWRHYLYGE-RIQMFSDHQSLKYLFTQKEFNMRQRRWLELVKDYDCQILYHPGKAN 499
           ++    R YLYG   I++++DHQ L +    + FN + +RW   +++Y+C+++Y PGK+N
Sbjct: 487 WSLDNLRAYLYGAGTIKVYTDHQPLTFALGNRNFNAKLKRWKARIEEYNCELIYKPGKSN 546

[Close]

BLAST of Sed0014527 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 6.6e-27
Identity = 67/174 (38.51%), Postives = 98/174 (56.32%), Query Frame = 0


Query: 326 GYYRRFVKDFSAIAWPLTRLTRKGVEF-VWDGRCDESFARLKRSLTSAPVLAVPEGTGGL 385
           GYYR+F+ +++ IA P+T   +K  +         E+F +LK  +   P+L +P+     
Sbjct: 449 GYYRKFIPNYADIAKPMTSCLKKRTKIDTQKLEYIEAFEKLKALIIRDPILQLPDFEKKF 508

Query: 386 VVYNDASKFGLGCVLMQHGKVIAYASRQLKPYEQNYPTHDMELAAVVFARKIWRHYLYGE 445
           V+  DAS   LG VL Q+G  I++ SR L  +E NY   + EL A+V+A K +RHYL G 
Sbjct: 509 VLTTDASNLALGAVLSQNGHPISFISRTLNDHELNYSAIEKELLAIVWATKTFRHYLLGR 568

Query: 446 RIQMFSDHQSLKYLFTQKEFNMRQRRWLELVKDYDCQILYHPGKANVVADTLSR 499
           +  + SDHQ L++L   KE   +  RW   + +Y  +I Y  GK N VAD LSR
Sbjct: 569 QFLIASDHQPLRWLHNLKEPGAKLERWRVRLSEYQFKIDYIKGKENSVADALSR 622

[Close]

BLAST of Sed0014527 vs. ExPASy Swiss-Prot
Match: P10394 (Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaster OX=7227 GN=POL PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 2.3e-24
Identity = 66/178 (37.08%), Postives = 97/178 (54.49%), Query Frame = 0


Query: 327 YYRRFVKDFSAIAWPLTRLTRKGVEFVWDGRCDESFARLKRSLTSAPVLAVPEGTGGLVV 386
           YYRRF+K+F+  +  +TRL +K V F W   C ++F  LK  L +  +L  P+ +    +
Sbjct: 559 YYRRFIKNFADYSRHITRLCKKNVPFEWTDECQKAFIHLKSQLINPTLLQYPDFSKEFCI 618

Query: 387 YNDASKFGLGCVLMQ----HGKVIAYASRQLKPYEQNYPTHDMELAAVVFARKIWRHYLY 446
             DASK   G VL Q    H   +AYASR     E N  T + ELAA+ +A   +R Y+Y
Sbjct: 619 TTDASKQACGAVLTQNHNGHQLPVAYASRAFTKGESNKSTTEQELAAIHWAIIHFRPYIY 678

Query: 447 GERIQMFSDHQSLKYLFTQKEFNMRQRRWLELVKDYDCQILYHPGKANVVADTLSRKT 501
           G+   + +DH+ L YLF+    + +  R    +++Y+  + Y  GK N VAD LSR T
Sbjct: 679 GKHFTVKTDHRPLTYLFSMVNPSSKLTRIRLELEEYNFTVEYLKGKDNHVADALSRIT 736

[Close]

BLAST of Sed0014527 vs. ExPASy Swiss-Prot
Match: Q9UR07 (Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-11 PE=3 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 4.0e-24
Identity = 100/401 (24.94%), Postives = 163/401 (40.65%), Query Frame = 0


Query: 325  VGYYRRFVKDFSAIAWPLTRLTRKGVEFVWDGRCDESFARLKRSLTSAPVLAVPEGTGGL 384
            V Y R+F+   S +  PL  L +K V + W     ++   +K+ L S PVL   + +  +
Sbjct: 649  VNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKI 708

Query: 385  VVYNDASKFGLGCVLMQHGK-----VIAYASRQLKPYEQNYPTHDMELAAVVFARKIWRH 444
            ++  DAS   +G VL Q         + Y S ++   + NY   D E+ A++ + K WRH
Sbjct: 709  LLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRH 768

Query: 445  YLYG--ERIQMFSDHQSLKYLFTQKE--FNMRQRRWLELVKDYDCQILYHPGKANVVADT 504
            YL    E  ++ +DH++L    T +    N R  RW   ++D++ +I Y PG AN +AD 
Sbjct: 769  YLESTIEPFKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINYRPGSANHIADA 828

Query: 505  LSRKTSHSAVLLSPRPDLRESLSGRGCAIVGQWADVQRQVVC-------------SGCCR 564
            LSR    +     P P   E  S      +    D + QVV              +   R
Sbjct: 829  LSRIVDET----EPIPKDSEDNSINFVNQISITDDFKNQVVTEYTNDTKLLNLLNNEDKR 888

Query: 565  IASRVALEAHDSPFAWHPEQVKAPGETSPVCV--------GRLSVP-------------R 624
            +   + L+  D       +Q+  P +T             G+L  P              
Sbjct: 889  VEENIQLK--DGLLINSKDQILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFT 948

Query: 625  WK---------------------------------------WEEISMDFISGLSRTSRKF 644
            WK                                       WE +SMDFI+ L  +S  +
Sbjct: 949  WKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPWESLSMDFITALPESS-GY 1008

[Close]

BLAST of Sed0014527 vs. ExPASy TrEMBL
Match: A0A5A7ULI8 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold73G00300 PE=4 SV=1)

HSP 1 Score: 434.1 bits (1115), Expect = 1.1e-117
Identity = 233/467 (49.89%), Postives = 286/467 (61.24%), Query Frame = 0


Query: 325 VGYYRRFVKDFSAIAWPLTRLTRKGVEFVWDGRCDESFARLKRSLTSAPVLAVPEGTGGL 384
           VGYYRRFV++FS IA PLT+LTRKG  FVW   C++SF  LK+ L +APV+ VP+G+G  
Sbjct: 323 VGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVITVPDGSGSF 382

Query: 385 VVYNDASKFGLGCVLMQHGKVIAYASRQLKPYEQNYPTHDMELAAVVFARKIWRHYLYGE 444
           V+Y+DASK GLGCVLMQ GKV+AYASRQLK +EQNYPTHD+ELAAVVFA KIWRHYLYGE
Sbjct: 383 VIYSDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGE 442

Query: 445 RIQMFSDHQSLKYLFTQKEFNMRQRRWLELVKDYDCQILYHPGKANVVADTLSRKTSHSA 504
           +IQ+F+DH+SLKY FTQKE NMRQRRWLELVKDYDC+ILYHPGKANVVAD LSRK SHSA
Sbjct: 443 KIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSA 502

Query: 505 VL-----------------------------LSPRPDLRESL-----------SGRGCAI 564
            L                             L+ +P LR+ +             RG A 
Sbjct: 503 ALITRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAE 562

Query: 565 VGQWAD----------VQRQVVCSGCCRIASRVALEAHDSPFAWHP-------------- 624
            GQ  +           +R +       + + +  EAH SPF+ HP              
Sbjct: 563 AGQAVEFSLSSDGGLLFERCLCVPSDSAVKTELLSEAHSSPFSMHPGSTKMYQDLKRVYW 622

Query: 625 ------------------EQVKAPGETSPVCVGRLSVPRWKWEEISMDFISGLSRTSRKF 684
                             +QVKAP +     +  LS+P WKWE +SMDFI+GL RT R F
Sbjct: 623 WRNMKREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGF 682

Query: 685 SQIWVIVDRLTKSAHFIPGRDTYTVEQWAQLFLEQIVRYHGVLLRIV--------STVIR 697
           + IW +VDRLTKSAHF+PG+ TYT  +WAQL++ +IVR HGV + IV        S   +
Sbjct: 683 TVIWAVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWK 742

[Close]

BLAST of Sed0014527 vs. ExPASy TrEMBL
Match: A0A5A7UR62 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold486G001070 PE=4 SV=1)

HSP 1 Score: 432.6 bits (1111), Expect = 3.2e-117
Identity = 224/425 (52.71%), Postives = 278/425 (65.41%), Query Frame = 0


Query: 326  GYYRRFVKDFSAIAWPLTRLTRKGVEFVWDGRCDESFARLKRSLTSAPVLAVPEGTGGLV 385
            GYYRRFV++FS IA PLT+LTRKG  FVW   C++SF  LK+ L +APVL +P+G+G  V
Sbjct: 839  GYYRRFVENFSRIAIPLTQLTRKGALFVWSKACEDSFQNLKQKLVTAPVLTIPDGSGSFV 898

Query: 386  VYNDASKFGLGCVLMQHGKVIAYASRQLKPYEQNYPTHDMELAAVVFARKIWRHYLYGER 445
            +Y+DASK GLGCVLMQ GKV+AYASRQLK +EQNYPTHD+ELAAVVFA KIWRHYLYGE+
Sbjct: 899  IYSDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEK 958

Query: 446  IQMFSDHQSLKYLFTQKEFNMRQRRWLELVKDYDCQILYHPGKANVVADTLSRKTSHSAV 505
            IQ+F+DH SLKY FTQKE NMRQRRWLELVKDYDC+ILYHPGKANVVAD LSRK SHSA 
Sbjct: 959  IQIFTDHNSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAA 1018

Query: 506  LLSPRPDLRESL-------SG--------RGCAIVGQWAD----------VQRQVVCSGC 565
            L++ +  L   L       SG        RG A  GQ  +           +R++     
Sbjct: 1019 LITRQVPLHRDLERAEIAVSGNDPYLVEKRGLAEAGQAVEFSISSDGGLLFERRLCVPSD 1078

Query: 566  CRIASRVALEAHDSPFAWHP---------EQVKAPGETSPVCVGRLSVPRWKWEEISMDF 625
              + + +  EAH SPF+ HP         ++VKAP +     +  LS+P WKWE +SMDF
Sbjct: 1079 STVKTELLSEAHSSPFSMHPGSTKMYQDLKRVKAPRQKPAGLLQPLSIPEWKWENVSMDF 1138

Query: 626  ISGLSRTSRKFSQIWVIVDRLTKSAHFIPGRDTYTVEQWAQLFLEQI------------- 685
            I+GL RT R F+ IWV+VD LTKSAHF+PG+ TYT  +WAQL++ +I             
Sbjct: 1139 ITGLPRTLRGFTVIWVVVDMLTKSAHFVPGKSTYTASKWAQLYMSEIGLQTAMGTRLDFS 1198

Query: 686  VRYHGV-------LLRIVSTVIRGLVCWISERVGTRFRSMEFANNNSYRSTIQMAPFEAL 697
              +H         L +++  ++R           +    MEFA NNSY++TI MAPFEAL
Sbjct: 1199 TAFHPQTDCQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEAL 1258

[Close]

BLAST of Sed0014527 vs. ExPASy TrEMBL
Match: A0A5A7V810 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold329G002410 PE=4 SV=1)

HSP 1 Score: 429.5 bits (1103), Expect = 2.7e-116
Identity = 229/454 (50.44%), Postives = 278/454 (61.23%), Query Frame = 0


Query: 326  GYYRRFVKDFSAIAWPLTRLTRKGVEFVWDGRCDESFARLKRSLTSAPVLAVPEGTGGLV 385
            GYYRRFV++FS IA PLT+LTRK   FVW   C++SF  LK+ L +APVL VP+G+G  V
Sbjct: 1268 GYYRRFVENFSRIATPLTQLTRKEAPFVWSKVCEDSFQNLKQKLVTAPVLTVPDGSGSFV 1327

Query: 386  VYNDASKFGLGCVLMQHGKVIAYASRQLKPYEQNYPTHDMELAAVVFARKIWRHYLYGER 445
            +Y+DASK GL CVLMQ GKV+AYASRQLK +EQNYPTHD+ELAAVVFA KIWRHYLYGE+
Sbjct: 1328 IYSDASKKGLSCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEK 1387

Query: 446  IQMFSDHQSLKYLFTQKEFNMRQRRWLELVKDYDCQILYHPGKANVVADTLSRKTSHSAV 505
            IQ+F+DH+SLKY FTQKE NMRQRRWLELVKDYDC+ILYHPGKANVVAD LSRK SHSA 
Sbjct: 1388 IQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAA 1447

Query: 506  LLSPRPDLRESL----------------------------------------SGRGCAIV 565
            L++ +  L   L                                          RG A  
Sbjct: 1448 LITRQAPLHRDLERAEIAVSVGAVTIQLAQLTVQSTLRQRIIDAQSNDPYLAEKRGLAEA 1507

Query: 566  GQWAD----------VQRQVVCSGCCRIASRVALEAHDSPFAWHP--------------- 625
            GQ  +           +R++       + + +  EAH SPF+ HP               
Sbjct: 1508 GQATEFSISSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWW 1567

Query: 626  -----------------EQVKAPGETSPVCVGRLSVPRWKWEEISMDFISGLSRTSRKFS 685
                             +QVKAP +     +  LS+P WKWE +SMDFI+GL RT R F+
Sbjct: 1568 RNMKREVAEFVSRCLVCQQVKAPKQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFT 1627

Query: 686  QIWVIVDRLTKSAHFIPGRDTYTVEQWAQLFLEQIVRYHGVLLRIVS-TVIRGLVCWISE 697
             IWV+VDRLTKSAHF+PG+ TYT  +WAQL++ +IVR HGV + IVS    R    +   
Sbjct: 1628 VIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVLIVSDRDARFTSKFWKG 1687

[Close]

BLAST of Sed0014527 vs. ExPASy TrEMBL
Match: A0A5A7SS38 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G00190 PE=4 SV=1)

HSP 1 Score: 427.9 bits (1099), Expect = 7.9e-116
Identity = 231/465 (49.68%), Postives = 283/465 (60.86%), Query Frame = 0


Query: 326 GYYRRFVKDFSAIAWPLTRLTRKGVEFVWDGRCDESFARLKRSLTSAPVLAVPEGTGGLV 385
           GYYRRFV++FS IA PLT+LTRKG  FVW   C++SF  LK+ L +APVL VP+G+G  +
Sbjct: 78  GYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLATAPVLTVPDGSGSFL 137

Query: 386 VYNDASKFGLGCVLMQHGKVIAYASRQLKPYEQNYPTHDMELAAVVFARKIWRHYLYGER 445
           +Y+DASK GLGCVLMQ GKV+AYASRQLK +EQNYPTHD+ELAAVVFA KIWRHYLYGE+
Sbjct: 138 IYSDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEK 197

Query: 446 IQMFSDHQSLKYLFTQKEFNMRQRRWLELVKDYDCQILYHPGKANVVADTLSRKTSHSAV 505
           IQ+F+DH+SLKY FTQKE NMRQRRWLELVKDYDC+ILYHPGKANVVAD LSRK SHSA 
Sbjct: 198 IQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAA 257

Query: 506 L-----------------------------LSPRPDLRESL-----------SGRGCAIV 565
           L                             L+ +P LR+ +             RG A  
Sbjct: 258 LITRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEA 317

Query: 566 GQWAD----------VQRQVVCSGCCRIASRVALEAHDSPFAWHPEQVKAPGETSPVCVG 625
           GQ  +           +R++       + + +  EAH SPF+ HP  VKAP +     + 
Sbjct: 318 GQAVEFSLSSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMHP-AVKAPRQKPAGLLQ 377

Query: 626 RLSVPRWKWEEISMDFISGLSRTSRKFSQIWVIVDRLTKSAHFIPGRDTYTVEQWAQLFL 685
            LS+P WKWE +SMDFI+GL RT R F+ IWV+VDRLTKSA F+PG+ TYT  +WAQL++
Sbjct: 378 PLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAPFVPGKSTYTASKWAQLYM 437

Query: 686 EQIVRYHGVLLRIV--------STVIRGLVCWISERV----------------------- 697
            +IVR HGV + IV        S   +GL   +  R+                       
Sbjct: 438 SEIVRLHGVPVSIVSDRDARFTSKFWKGLQTTMGTRLDFSTAFHPQTDGQTERLNQVLED 497

[Close]

BLAST of Sed0014527 vs. ExPASy TrEMBL
Match: A0A5A7V003 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1186G00140 PE=4 SV=1)

HSP 1 Score: 426.4 bits (1095), Expect = 2.3e-115
Identity = 232/474 (48.95%), Postives = 285/474 (60.13%), Query Frame = 0


Query: 326  GYYRRFVKDFSAIAWPLTRLTRKGVEFVWDGRCDESFARLKRSLTSAPVLAVPEGTGGLV 385
            GYYRRFV++FS IA PLT+LTRKG  FVW   C++S   LK+ L +APVL VP+G+G  V
Sbjct: 599  GYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSLQNLKQKLVTAPVLTVPDGSGSFV 658

Query: 386  VYNDASKFGLGCVLMQHGKVIAYASRQLKPYEQNYPTHDMELAAVVFARKIWRHYLYGER 445
            +Y+DAS  GLGCVLMQ GKV+AYASRQLK +EQNYPTHD+ELAAVVFA KIWRHYLYGE+
Sbjct: 659  IYSDASMKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEK 718

Query: 446  IQMFSDHQSLKYLFTQKEFNMRQRRWLELVKDYDCQILYHPGKANVVADTLSRKTSHSAV 505
            IQ+F+DH+SLKY FTQKE NMRQRRWLELVKDYDC+ILYHPGKANVVAD LSRK SHSA 
Sbjct: 719  IQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAA 778

Query: 506  L-----------------------------LSPRPDLRESL-----------SGRGCAIV 565
            L                             L+ +P LR+ +             RG A  
Sbjct: 779  LITRQAPLHRDLERAEIAVSVGAVTIQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEA 838

Query: 566  GQWAD----------VQRQVVCSGCCRIASRVALEAHDSPFAWHP---------EQVKAP 625
            GQ  +           +R++       I + +  EAH SPF+ HP         ++VKAP
Sbjct: 839  GQAVEFSLSSDGGLLFERRLCVPSDSAIKTELLSEAHSSPFSMHPGSTKMYQDLKRVKAP 898

Query: 626  GETSPVCVGRLSVPRWKWEEISMDFISGLSRTSRKFSQIWVIVDRLTKSAHFIPGRDTYT 685
             +     +  LS+P WKWE +SMDFI+GL RT + F+ IWV+VDRLTKSAHF+PG+ TYT
Sbjct: 899  RQKPAGLLQPLSIPEWKWENMSMDFITGLPRTLKGFTVIWVVVDRLTKSAHFVPGKSTYT 958

Query: 686  VEQWAQLFLEQIVRYHGVLLRIV--------STVIRGLVCWISERV-------------- 697
              +WAQL++ +IVR HGV + IV        S   +GL   +  R+              
Sbjct: 959  ASKWAQLYMSEIVRLHGVPVSIVSDRDVRFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQT 1018

[Close]

BLAST of Sed0014527 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 50.8 bits (120), Expect = 5.0e-06
Identity = 24/54 (44.44%), Postives = 33/54 (61.11%), Query Frame = 0


Query: 326 GYYRRFVKDFSAIAWPLTRLTRKGVEFVWDGRCDESFARLKRSLTSAPVLAVPE 380
           GYYRRFVK++  I  PLT L +K     W      +F  LK ++T+ PVLA+P+
Sbjct: 74  GYYRRFVKNYGKIVRPLTELLKKN-SLKWTEMAALAFKALKGAVTTLPVLALPD 126

The following BLAST results are available for this feature:

BLAST of Sed0014527 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0056702.1	2.3e-117	49.89	pol protein [Cucumis melo var. makuwa]	[more]
KAA0056806.1	6.6e-117	52.71	pol protein [Cucumis melo var. makuwa]	[more]
KAA0063718.1	5.6e-116	50.44	pol protein [Cucumis melo var. makuwa]	[more]
KAA0032207.1	1.6e-115	49.68	pol protein [Cucumis melo var. makuwa]	[more]
KAA0059071.1	4.7e-115	48.95	pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Sed0014527 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P04323	6.8e-32	37.86	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
Q8I7P9	9.2e-29	37.77	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast...	[more]
P20825	6.6e-27	38.51	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
P10394	2.3e-24	37.08	Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaste...	[more]
Q9UR07	4.0e-24	24.94	Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]

BLAST of Sed0014527 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7ULI8	1.1e-117	49.89	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold73G00300 PE=...	[more]
A0A5A7UR62	3.2e-117	52.71	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold48...	[more]
A0A5A7V810	2.7e-116	50.44	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold32...	[more]
A0A5A7SS38	7.9e-116	49.68	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G00190 PE...	[more]
A0A5A7V003	2.3e-115	48.95	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold11...	[more]

BLAST of Sed0014527 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00860.1	5.0e-06	44.44	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 323..385 e-value: 4.9E-17 score: 63.7
IPR041373	Reverse transcriptase, RNase H-like domain	PFAM	PF17917	RT_RNaseH	coord: 384..478 e-value: 2.3E-29 score: 101.8
None	No IPR available	GENE3D	3.10.20.370		coord: 386..448 e-value: 3.6E-5 score: 25.6
None	No IPR available	PANTHER	PTHR24559:SF355	PROTEIN, PUTATIVE-RELATED	coord: 325..499
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 325..499
None	No IPR available	CDD	cd09274	RNase_HI_RT_Ty3	coord: 385..499 e-value: 9.66393E-53 score: 175.759
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 574..651 e-value: 3.9E-8 score: 34.8
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 575..689
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 325..484

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0014527.1	Sed0014527.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090304	nucleic acid metabolic process
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0016740	transferase activity