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Sed0014485 (gene) Chayote v1
Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.GCCCCCAACTATGTGCTCTGTTTGATGCAAGTTTCTAGAAGTGTTGATACAATTTTATGGAAAATGTTGATACTAGATATTTCATATGACAAGACAATGTGAATGATTATGAGTTATTATACATGTTTGGGCCAAAAAAACATTCTTCCATAATCAATGTTCATTCATCTCATAATCATTCATTTTCATGCTCTCACTGGCCTCATAACCATTTTTCATTTCTCCATAACCATTTTTAATTCTTCTCAATCTCATACATGACCATTCTCTTTATCTCAGATATAGATAATCTTTCTTCTTCATGTTAATAATTCTCCCACATCATTCTCTTTGCGGCAAGCTCTAAATAAGTTTAAATTCCTTTTTTATTGATCTCTTATGTTGAAATTGAATTTATGGATACATGGAAATGTGGATGGAAATATGAACATGTTTATGAAAATGATAAAGGCTTGTAATAATGCAACTCTGGCTGTCTGTGAAGGTTGTTGAAGGTGTAAAGGAAAATGGAGTAATGTACAGAGGGATGAGGAAAGTAGGGTCCAGTCTACCAATGTGTGAGCACAAGTGCTATGGATGCATCCCATGTGAAGCCATTCAAGTCCCAACCAACAACAAAAGGGGCACCCATGTAGGGGTCCAATACACTAACTATGAGCCTGAGGGATGTAAATGCAAGTGTGGCCCTTCCTTTCACAGCCCTTGA GCCCCCAACTATGTGCTCTGTTTGATGCAAGTTTCTAGAAGTGTTGATACAATTTTATGGAAAATGTTGATACTAGATATTTCATATGACAAGACAATGTGAATGATTATGAGTTATTATACATGTTTGGGCCAAAAAAACATTCTTCCATAATCAATGTTCATTCATCTCATAATCATTCATTTTCATGCTCTCACTGGCCTCATAACCATTTTTCATTTCTCCATAACCATTTTTAATTCTTCTCAATCTCATACATGACCATTCTCTTTATCTCAGATATAGATAATCTTTCTTCTTCATGTTAATAATTCTCCCACATCATTCTCTTTGCGGCAAGCTCTAAATAAGTTTAAATTCCTTTTTTATTGATCTCTTATGTTGAAATTGAATTTATGGATACATGGAAATGTGGATGGAAATATGAACATGTTTATGAAAATGATAAAGGCTTGTAATAATGCAACTCTGGCTGTCTGTGAAGGTTGTTGAAGGTGTAAAGGAAAATGGAGTAATGTACAGAGGGATGAGGAAAGTAGGGTCCAGTCTACCAATGTGTGAGCACAAGTGCTATGGATGCATCCCATGTGAAGCCATTCAAGTCCCAACCAACAACAAAAGGGGCACCCATGTAGGGGTCCAATACACTAACTATGAGCCTGAGGGATGTAAATGCAAGTGTGGCCCTTCCTTTCACAGCCCTTGA ATGCAACTCTGGCTGTCTGTGAAGGTTGTTGAAGGTGTAAAGGAAAATGGAGTAATGTACAGAGGGATGAGGAAAGTAGGGTCCAGTCTACCAATGTGTGAGCACAAGTGCTATGGATGCATCCCATGTGAAGCCATTCAAGTCCCAACCAACAACAAAAGGGGCACCCATGTAGGGGTCCAATACACTAACTATGAGCCTGAGGGATGTAAATGCAAGTGTGGCCCTTCCTTTCACAGCCCTTGA MQLWLSVKVVEGVKENGVMYRGMRKVGSSLPMCEHKCYGCIPCEAIQVPTNNKRGTHVGVQYTNYEPEGCKCKCGPSFHSP Homology
BLAST of Sed0014485 vs. NCBI nr
Match: XP_023526549.1 (EPIDERMAL PATTERNING FACTOR-like protein 2 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 132.5 bits (332), Expect = 1.6e-27 Identity = 60/77 (77.92%), Postives = 67/77 (87.01%), Query Frame = 0
BLAST of Sed0014485 vs. NCBI nr
Match: XP_022955437.1 (EPIDERMAL PATTERNING FACTOR-like protein 2 [Cucurbita moschata]) HSP 1 Score: 132.5 bits (332), Expect = 1.6e-27 Identity = 60/77 (77.92%), Postives = 67/77 (87.01%), Query Frame = 0
BLAST of Sed0014485 vs. NCBI nr
Match: XP_022980756.1 (EPIDERMAL PATTERNING FACTOR-like protein 2 [Cucurbita maxima]) HSP 1 Score: 132.1 bits (331), Expect = 2.1e-27 Identity = 60/77 (77.92%), Postives = 67/77 (87.01%), Query Frame = 0
BLAST of Sed0014485 vs. NCBI nr
Match: XP_004146810.1 (EPIDERMAL PATTERNING FACTOR-like protein 3 [Cucumis sativus] >XP_011652341.1 EPIDERMAL PATTERNING FACTOR-like protein 3 [Cucumis sativus] >XP_011652342.1 EPIDERMAL PATTERNING FACTOR-like protein 3 [Cucumis sativus] >KAE8651286.1 hypothetical protein Csa_001818 [Cucumis sativus]) HSP 1 Score: 129.0 bits (323), Expect = 1.8e-26 Identity = 58/76 (76.32%), Postives = 63/76 (82.89%), Query Frame = 0
BLAST of Sed0014485 vs. NCBI nr
Match: XP_008447616.1 (PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 3 [Cucumis melo] >XP_008447617.1 PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 3 [Cucumis melo] >XP_008447618.1 PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 3 [Cucumis melo] >KAA0036717.1 EPIDERMAL PATTERNING FACTOR-like protein 3 [Cucumis melo var. makuwa] >TYK03693.1 EPIDERMAL PATTERNING FACTOR-like protein 3 [Cucumis melo var. makuwa]) HSP 1 Score: 128.3 bits (321), Expect = 3.1e-26 Identity = 56/76 (73.68%), Postives = 63/76 (82.89%), Query Frame = 0
BLAST of Sed0014485 vs. ExPASy Swiss-Prot
Match: C4B8C4 (EPIDERMAL PATTERNING FACTOR-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=EPFL3 PE=1 SV=1) HSP 1 Score: 69.3 bits (168), Expect = 2.2e-11 Identity = 29/53 (54.72%), Postives = 35/53 (66.04%), Query Frame = 0
BLAST of Sed0014485 vs. ExPASy Swiss-Prot
Match: Q9LFT5 (EPIDERMAL PATTERNING FACTOR-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=EPFL1 PE=1 SV=1) HSP 1 Score: 53.9 bits (128), Expect = 9.7e-07 Identity = 28/76 (36.84%), Postives = 37/76 (48.68%), Query Frame = 0
BLAST of Sed0014485 vs. ExPASy Swiss-Prot
Match: Q1PEY6 (EPIDERMAL PATTERNING FACTOR-like protein 6 OS=Arabidopsis thaliana OX=3702 GN=EPFL6 PE=1 SV=1) HSP 1 Score: 49.7 bits (117), Expect = 1.8e-05 Identity = 25/61 (40.98%), Postives = 32/61 (52.46%), Query Frame = 0
BLAST of Sed0014485 vs. ExPASy TrEMBL
Match: A0A6J1GTM4 (Epidermal patterning factor-like protein OS=Cucurbita moschata OX=3662 GN=LOC111457464 PE=3 SV=1) HSP 1 Score: 132.5 bits (332), Expect = 7.9e-28 Identity = 60/77 (77.92%), Postives = 67/77 (87.01%), Query Frame = 0
BLAST of Sed0014485 vs. ExPASy TrEMBL
Match: A0A6J1IUG9 (Epidermal patterning factor-like protein OS=Cucurbita maxima OX=3661 GN=LOC111480029 PE=3 SV=1) HSP 1 Score: 132.1 bits (331), Expect = 1.0e-27 Identity = 60/77 (77.92%), Postives = 67/77 (87.01%), Query Frame = 0
BLAST of Sed0014485 vs. ExPASy TrEMBL
Match: A0A0A0LCQ8 (Epidermal patterning factor-like protein OS=Cucumis sativus OX=3659 GN=Csa_3G847610 PE=3 SV=1) HSP 1 Score: 131.0 bits (328), Expect = 2.3e-27 Identity = 58/75 (77.33%), Postives = 63/75 (84.00%), Query Frame = 0
BLAST of Sed0014485 vs. ExPASy TrEMBL
Match: A0A1S3BIS6 (Epidermal patterning factor-like protein OS=Cucumis melo OX=3656 GN=LOC103490030 PE=3 SV=1) HSP 1 Score: 128.3 bits (321), Expect = 1.5e-26 Identity = 56/76 (73.68%), Postives = 63/76 (82.89%), Query Frame = 0
BLAST of Sed0014485 vs. ExPASy TrEMBL
Match: A0A5D3BVF6 (Epidermal patterning factor-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold863G00550 PE=3 SV=1) HSP 1 Score: 128.3 bits (321), Expect = 1.5e-26 Identity = 56/76 (73.68%), Postives = 63/76 (82.89%), Query Frame = 0
BLAST of Sed0014485 vs. TAIR 10
Match: AT3G13898.1 (unknown protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G10310.1). ) HSP 1 Score: 69.3 bits (168), Expect = 1.6e-12 Identity = 29/53 (54.72%), Postives = 35/53 (66.04%), Query Frame = 0
BLAST of Sed0014485 vs. TAIR 10
Match: AT5G10310.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13898.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). ) HSP 1 Score: 53.9 bits (128), Expect = 6.9e-08 Identity = 28/76 (36.84%), Postives = 37/76 (48.68%), Query Frame = 0
BLAST of Sed0014485 vs. TAIR 10
Match: AT2G30370.1 (allergen-related ) HSP 1 Score: 49.7 bits (117), Expect = 1.3e-06 Identity = 25/61 (40.98%), Postives = 32/61 (52.46%), Query Frame = 0
BLAST of Sed0014485 vs. TAIR 10
Match: AT2G30370.2 (allergen-related ) HSP 1 Score: 49.7 bits (117), Expect = 1.3e-06 Identity = 25/61 (40.98%), Postives = 32/61 (52.46%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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