Sed0014404 (gene) Chayote v1

Overview


Name	Sed0014404
Type	gene
Organism	Sechium edule (Chayote v1)
Description	SAGA-associated factor 11
Location	LG13: 20088459 .. 20091265 (+)
RNA-Seq Expression	Sed0014404
Synteny	Sed0014404

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTACTCTGGATATAGCGGAGCAAAACTCTAATTTCCTGGTAGCCCAACCACTTATTAACCAATAACCACAAAGAACCTACTCAACTGGTAAGTTCTAAGCTCCATTTCACAGATTTTCCCTACCTCAGTTTTAAGATACTCGACCAAATTGTTTTCTTGTAATGAGGAAAAGCACCGGAACTCCATTTTCGTTTTTTGAGATTATATCTACACCAGAGTCGAAGATGGTTTGAAATTTCTTCAATGAAGAAAAATAGTAGGATTTTGATATATTTTTTTTTCTATATGAGGAAATGATAATTTTCATTGCCGGGAATTGAACCCAACCTGGAGGATTTGGATTCTTATATGTTACCCTTTGCAGTAAATTTTCTTTATTGTCATTGGTATGTTCCATAAATTAAATCGGAAAAAATATGTAATCGTGTGTAATATATCATAATTATGTTTGTAGTTCTGTTTTTGTTCACTCCTTTTAGAATTTGTATCCTGAGCTATAGTCCCTTTTTATTATATCAATGAAAACCTTAGTATCTGATTAGAAAGGTTCATGACGGTCTGTCAAACCTAAACTAACATGAAAAACTTGATTGATTTTTGAAAGCTCCGTCTAACTATTTTATGGGTGAGAAAATGCTTAGTTCAAGGGTAACATAAACATGGCAAACTTAATGGATTATTCGAAAGCTCTGTCTTACTAATTTTATGTGTGAGAAAATGCTTAGTTAAAGGGGAGTGTAAACTTAGCCAGGCAGTTAGACATTTCTATTTCTTTTAAACCCTAAATCAACAAGGAAAATTTAATGGACTATTTGAAAGCTCTGTTTAACTATTTTTATGTGTGATAAATTCTTAGTTCATAGGTAACATAAACATAGTTGGGCTGTTAAGACATTTCTATTTATTGTAAGGGTCATAGGTTTGAATTGTTCTATTCCACTATGTGAGGTTAGTACACAATGTCTTCGAATTGAACTCATCATAAGTTAGCCTAGTGGTCAAGGGAGTCTTGGTGAACTAAGAAGCTATAAGTTCAATCCATGATAGCAATCAACCTAGGAATTAACTTTCTAAAGTTTTCCTTGACAACCAAATGCATAATTTTTTTTGATATCCGTGATTGTCCGGGCCAGCTTGCGTGCACCTCGACTAATATCACGGGACATACCGCCTGGCCCTACAACATTTGGATACCAAGAAAACCCGTAGGAAATTAATTCCTAGTTAGGTGGCCACCATAGATTGAGTCCATCACCTCTTAGTTCCCCACAAGGCCCTTCTTGACAACCAAATGTATAAGGGTAAGGTGGTAGCCTGGACATTCACGATATTAACTAAAAGGGTTTTTTTACATGTTAAATAAAAGGTTAAAAGGCTAATAGTGGTTTGGTTTCAATATTTTTCCTCTTGAAGAAGCAAGGAATAGCCTAAGTTTTAATTAAAATTATAATACAAATTCCAAATTTGTATGCTGAGTATGACTAAAAAAATAAGTATATAAAGTAAAAGAAAATATTACCCGTCAATTGTCACTAAAATAAAGAATTCTTAAAGGTAACCTATAAAGAATTATACTAAAAGGATGGATTTATCCATAATTTTTTCTTCTTTTTGTTAAGAAAATTATTAATAGCAGTAATAGTTCAAATTGTTTCAACTTAATCTCTATGTTGTTTAAGAATGTAGCTGTTTAATAATATAATATTTTTCTGATCATTATGTGAAACATAGATTCTAAGTCTCAGTAAGTTTTCACAAGGCATAAGCCTCAAAAAGGCTTAGATGGATGATGCGCCAACCATGCCATGAAAACTCCAGAAGTATGGTAGCATTAATAATCACTTTTGACTTTCTTATTAGAGAATTCAGAAACTAATAGAACTGGCATTTCTGTTGCTTTCTATGTTAGCAGCTTTCATCTAATAATTTCTTTGGAGATCTCCTGGATTCTGTGATTGTTGATGTTGCATCGGAATGTCATCGAATAGCAAGGTTAGGTCTTGATCGTAACTTAGAAGAGGAAGAAGAAGAATTGAGACTTTCAGCACAGGCACGAGCAAGAGTAGCAGATTCCAGCAATAGCAGTGAAGCAAACGGCAAATATGTAGTTGATATTTTTGGACAAAAGCATCGATTGTATGAATTGTGACCGATCAATTGTGGCTGGGAGATTTGCCCCTCATTTAGAGAAATGCATGGGAAGGGTAACTCTCTGCACCTAGACATATGTTTTGTGTTAGTTGATATAATTAAATTTATCTCAATCCATTAGCTTAAGTTTTTTAAATTGATTAGTGATTTAACATCCTTCAACATGGTATTTGAGCAAGGTATCTGAGCCACAGCAAGAGCAAGAGGTCCTACTCTTATGTTCAAACTCCTACTGATTCGTTTCATCCCCAATTAATATTAACTTCTACTTGATAGTCACTCTCAAATTTCCAAATTCACAAGTGGGGAGAAGTGTTGGTTGATATATTTCAATTTACCCTAATCCATTAGTTTAAGCTTTTTGTTTGATTGGTGATTTAACATATTTCAACCTTTTGTACACACATTCTGTTTCTTTTTTGTTCAATCTCTCCTCACTTTGTCTCATCAACTGTCTACTCTACTATAGGGTAGAAAGGCTCGTCTCAAAGTAACAAGAAGTAGTACAGCTGCACAGAACCGGTATTCACGAGGCAGTCCTATTTCTGTATATTCCCCTTATCCTAATTCCACCAGCATGAATCGCTTGCCTAATGGAACGTCTAGTCTTCCAGGCGAGGAGTACTCAAACGGTACATCCAAAGACCCATGA

mRNA sequence

ATGGTTACTCTGGATATAGCGGAGCAAAACTCTAATTTCCTGCTTTCATCTAATAATTTCTTTGGAGATCTCCTGGATTCTGTGATTGTTGATGTTGCATCGGAATGTCATCGAATAGCAAGGTTAGGTCTTGATCGTAACTTAGAAGAGGAAGAAGAAGAATTGAGACTTTCAGCACAGGCACGAGCAAGATTGATATTTTTGGACAAAAGCATCGATTGTATGAATTGTGACCGATCAATTGTGGCTGGGAGATTTGCCCCTCATTTAGAGAAATGCATGGGAAGGGGTAGAAAGGCTCGTCTCAAAGTAACAAGAAGTAGTACAGCTGCACAGAACCGGTATTCACGAGGCAGTCCTATTTCTGTATATTCCCCTTATCCTAATTCCACCAGCATGAATCGCTTGCCTAATGGAACGTCTAGTCTTCCAGGCGAGGAGTACTCAAACGGTACATCCAAAGACCCATGA

Coding sequence (CDS)

ATGGTTACTCTGGATATAGCGGAGCAAAACTCTAATTTCCTGCTTTCATCTAATAATTTCTTTGGAGATCTCCTGGATTCTGTGATTGTTGATGTTGCATCGGAATGTCATCGAATAGCAAGGTTAGGTCTTGATCGTAACTTAGAAGAGGAAGAAGAAGAATTGAGACTTTCAGCACAGGCACGAGCAAGATTGATATTTTTGGACAAAAGCATCGATTGTATGAATTGTGACCGATCAATTGTGGCTGGGAGATTTGCCCCTCATTTAGAGAAATGCATGGGAAGGGGTAGAAAGGCTCGTCTCAAAGTAACAAGAAGTAGTACAGCTGCACAGAACCGGTATTCACGAGGCAGTCCTATTTCTGTATATTCCCCTTATCCTAATTCCACCAGCATGAATCGCTTGCCTAATGGAACGTCTAGTCTTCCAGGCGAGGAGTACTCAAACGGTACATCCAAAGACCCATGA

Protein sequence

MVTLDIAEQNSNFLLSSNNFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQARARLIFLDKSIDCMNCDRSIVAGRFAPHLEKCMGRGRKARLKVTRSSTAAQNRYSRGSPISVYSPYPNSTSMNRLPNGTSSLPGEEYSNGTSKDP

Homology

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BLAST of Sed0014404 vs. NCBI nr
Match: XP_008457340.1 (PREDICTED: ataxin-7-like protein 3 [Cucumis melo] >XP_008457341.1 PREDICTED: ataxin-7-like protein 3 [Cucumis melo])

HSP 1 Score: 224.2 bits (570), Expect = 8.0e-55
Identity = 121/163 (74.23%), Postives = 130/163 (79.75%), Query Frame = 0


Query: 17  SNNFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQARARL----------- 76
           S+N FGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQAR R+           
Sbjct: 16  SSNLFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQARVRVADSSNSSEANG 75

Query: 77  -----IF-------LDKSIDCMNCDRSIVAGRFAPHLEKCMGRGRKARLKVTRSSTAAQN 136
                IF        ++  DCMNC RSI+AGRFAPHLEKCMGRGRKAR KVTRSSTAAQ+
Sbjct: 76  KYVVDIFGQTHPSVANEIFDCMNCGRSIMAGRFAPHLEKCMGRGRKARPKVTRSSTAAQS 135

Query: 137 RYSRGSPISVYSPYPNSTSMNRLPNGTSSLPGEEYSNGTSKDP 157
           RYSRG+P+S YSPYPNSTS NRLPNGTSSL GEEYSNGTS+DP
Sbjct: 136 RYSRGNPVSAYSPYPNSTSTNRLPNGTSSLAGEEYSNGTSEDP 178

[Close]

BLAST of Sed0014404 vs. NCBI nr
Match: XP_004153719.1 (SAGA-associated factor 11 [Cucumis sativus] >XP_011658722.1 SAGA-associated factor 11 [Cucumis sativus] >KGN65832.1 hypothetical protein Csa_023220 [Cucumis sativus])

HSP 1 Score: 223.8 bits (569), Expect = 1.0e-54
Identity = 120/163 (73.62%), Postives = 130/163 (79.75%), Query Frame = 0


Query: 17  SNNFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQARARL----------- 76
           S+N FGDLLDSVIVD+ASECHRIARLGLDRNLEEEEEELRLSAQAR R+           
Sbjct: 16  SSNLFGDLLDSVIVDIASECHRIARLGLDRNLEEEEEELRLSAQARVRVADSSNSSEANG 75

Query: 77  -----IF-------LDKSIDCMNCDRSIVAGRFAPHLEKCMGRGRKARLKVTRSSTAAQN 136
                IF        ++  DCMNC RSI+AGRFAPHLEKCMGRGRKAR KVTRSSTAAQ+
Sbjct: 76  KYVVDIFGQTHPSVANEIFDCMNCGRSIMAGRFAPHLEKCMGRGRKARPKVTRSSTAAQS 135

Query: 137 RYSRGSPISVYSPYPNSTSMNRLPNGTSSLPGEEYSNGTSKDP 157
           RYSRG+P+S YSPYPNSTS NRLPNGTSSL GEEYSNGTS+DP
Sbjct: 136 RYSRGNPVSAYSPYPNSTSTNRLPNGTSSLAGEEYSNGTSEDP 178

[Close]

BLAST of Sed0014404 vs. NCBI nr
Match: KAG7037006.1 (Ataxin-7-like protein 3 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 220.3 bits (560), Expect = 1.2e-53
Identity = 123/172 (71.51%), Postives = 129/172 (75.00%), Query Frame = 0


Query: 8   EQNSNFLLSSNNFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQARARLIF 67
           E N++  LSS NFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQAR R+  
Sbjct: 6   EDNASSQLSS-NFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQARVRVAD 65

Query: 68  LDKS-----------------------IDCMNCDRSIVAGRFAPHLEKCMGRGRKARLKV 127
              S                        DCMNC RSIVAGRFAPHLEKCMGRGRKARLKV
Sbjct: 66  SSNSSEANGKYVVDIFGKNHPSVASEIFDCMNCGRSIVAGRFAPHLEKCMGRGRKARLKV 125

Query: 128 TRSSTAAQNRYSRGSPISVYSPYPNSTSMNRLPNGTSSLPGEEYSNGTSKDP 157
           TRSSTA Q+RYSRGS +S YSPYPNSTS NRLPNGTSSL G EYSNG S +P
Sbjct: 126 TRSSTATQSRYSRGSSVSAYSPYPNSTSTNRLPNGTSSLAGGEYSNGPSGEP 176

[Close]

BLAST of Sed0014404 vs. NCBI nr
Match: XP_022949027.1 (SAGA-associated factor 11 homolog isoform X2 [Cucurbita moschata] >XP_023523179.1 SAGA-associated factor 11 homolog isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 220.3 bits (560), Expect = 1.2e-53
Identity = 123/172 (71.51%), Postives = 129/172 (75.00%), Query Frame = 0


Query: 8   EQNSNFLLSSNNFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQARARLIF 67
           E N++  LSS NFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQAR R+  
Sbjct: 6   EDNASSQLSS-NFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQARVRVAD 65

Query: 68  LDKS-----------------------IDCMNCDRSIVAGRFAPHLEKCMGRGRKARLKV 127
              S                        DCMNC RSIVAGRFAPHLEKCMGRGRKARLKV
Sbjct: 66  SSNSSEANGKYVVDIFGQNHPSVASEIFDCMNCGRSIVAGRFAPHLEKCMGRGRKARLKV 125

Query: 128 TRSSTAAQNRYSRGSPISVYSPYPNSTSMNRLPNGTSSLPGEEYSNGTSKDP 157
           TRSSTA Q+RYSRGS +S YSPYPNSTS NRLPNGTSSL G EYSNG S +P
Sbjct: 126 TRSSTATQSRYSRGSSVSAYSPYPNSTSTNRLPNGTSSLAGGEYSNGPSGEP 176

[Close]

BLAST of Sed0014404 vs. NCBI nr
Match: XP_022949028.1 (SAGA-associated factor 11 homolog isoform X3 [Cucurbita moschata])

HSP 1 Score: 219.2 bits (557), Expect = 2.6e-53
Identity = 119/163 (73.01%), Postives = 124/163 (76.07%), Query Frame = 0


Query: 17  SNNFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQARARLIFLDKS----- 76
           S+NFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQAR R+     S     
Sbjct: 6   SSNFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQARVRVADSSNSSEANG 65

Query: 77  ------------------IDCMNCDRSIVAGRFAPHLEKCMGRGRKARLKVTRSSTAAQN 136
                              DCMNC RSIVAGRFAPHLEKCMGRGRKARLKVTRSSTA Q+
Sbjct: 66  KYVVDIFGQNHPSVASEIFDCMNCGRSIVAGRFAPHLEKCMGRGRKARLKVTRSSTATQS 125

Query: 137 RYSRGSPISVYSPYPNSTSMNRLPNGTSSLPGEEYSNGTSKDP 157
           RYSRGS +S YSPYPNSTS NRLPNGTSSL G EYSNG S +P
Sbjct: 126 RYSRGSSVSAYSPYPNSTSTNRLPNGTSSLAGGEYSNGPSGEP 168

[Close]

BLAST of Sed0014404 vs. ExPASy Swiss-Prot
Match: Q94BV2 (SAGA-associated factor 11 OS=Arabidopsis thaliana OX=3702 GN=SGF11 PE=1 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 2.4e-38
Identity = 94/173 (54.34%), Postives = 115/173 (66.47%), Query Frame = 0


Query: 7   AEQN-SNFLLSSNNFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQARARL 66
           AE N S+    S+  F DL+DSVI DVASECHR+ARLGLDR+L+  EEELRLS +ARA++
Sbjct: 4   AEDNKSSHAQLSSQIFLDLVDSVIADVASECHRVARLGLDRDLDIVEEELRLSVEARAKI 63

Query: 67  ----------------IF-------LDKSIDCMNCDRSIVAGRFAPHLEKCMGRGRKARL 126
                           IF         +  +CMNC R IVAGRFAPHLEKCMG+GRKAR 
Sbjct: 64  ADPSNNLETNTKYVVDIFGQTHPPVASEVFNCMNCGRQIVAGRFAPHLEKCMGKGRKARA 123

Query: 127 KVTRSSTAAQNRYSRGSPISVYSPYPNSTSMNRLPNGTSSLPGEEYSNGTSKD 156
           K TRS+TAAQNR +R SP   YSPYPNS S N+L +G+  + GE+ SN T ++
Sbjct: 124 KTTRSTTAAQNRNARRSPNPRYSPYPNSASENQLASGSPGVAGEDCSNFTVRE 176

[Close]

BLAST of Sed0014404 vs. ExPASy Swiss-Prot
Match: B1PM81 (SAGA-associated factor 11 homolog OS=Musca domestica OX=7370 GN=Sgf11 PE=2 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 5.8e-08
Identity = 44/129 (34.11%), Postives = 61/129 (47.29%), Query Frame = 0


Query: 5   DIAEQNSNFLLSSNNFFGDLLDSVIVDVASECHRIARLG----LDR-NLEEEEEELRLSA 64
           +I     N   ++N  +  LLD  +V V  E H + + G    +D  N +E E   R+  
Sbjct: 49  EIVNDPKNLDEAANYLYQSLLDDAVVGVFLEIHHLRKTGNLTAMDGVNEDESETSFRIVD 108

Query: 65  QARARLIFLD---KSIDCM--NCDRSIVAGRFAPHLEKCMGRGR-KARLKVTRSSTAAQN 123
                +  +    K +DC   NCDR + A RFAPHLEKCMG GR  +R+   R +T   N
Sbjct: 109 MPNFDIFGISTAKKPMDCTCPNCDRPVSAARFAPHLEKCMGMGRISSRIASRRLATKESN 168

[Close]

BLAST of Sed0014404 vs. ExPASy Swiss-Prot
Match: B3NHQ1 (SAGA-associated factor 11 homolog OS=Drosophila erecta OX=7220 GN=Sgf11 PE=3 SV=2)

HSP 1 Score: 57.4 bits (137), Expect = 1.7e-07
Identity = 39/127 (30.71%), Postives = 61/127 (48.03%), Query Frame = 0


Query: 5   DIAEQNSNFLLSSNNFFGDLLDSVIVDVASECHRIARLGLDRNLE--EEEEELRLSAQAR 64
           ++ +   N   +SN  F  LLD  +V + +E H + + G    L+   E+   R+     
Sbjct: 32  ELIKDPKNLDEASNYLFQTLLDDAVVGIFNETHHLRKSGNLAALDGVPEDSTYRMCEMPN 91

Query: 65  ARLIFLD---KSIDCM--NCDRSIVAGRFAPHLEKCMGRGR-----KARLKVTRSSTAAQ 120
             +  +    K +DC   NCDR + A RFAPHLEKCMG GR      +R   T+    + 
Sbjct: 92  LDIFGISTAKKPMDCTCPNCDRLVAAARFAPHLEKCMGMGRISSRIASRRLATKEGATSA 151

[Close]

BLAST of Sed0014404 vs. ExPASy Swiss-Prot
Match: B4KY72 (SAGA-associated factor 11 homolog OS=Drosophila mojavensis OX=7230 GN=Sgf11 PE=3 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.7e-07
Identity = 40/119 (33.61%), Postives = 55/119 (46.22%), Query Frame = 0


Query: 16  SSNNFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQARARLIFLD------ 75
           ++N  F  LLD V+  +  E H + + G    L+   EE   SA     +  LD      
Sbjct: 49  AANYLFQGLLDDVVAGIFIEIHHLRKTGNLTALDGVGEENAESAYRICEMPNLDIFGIST 108

Query: 76  --KSIDCM--NCDRSIVAGRFAPHLEKCMGRGRKARLKVTRSSTAAQNRYSRGSPISVY 125
             K +DC   +CDR + A RFAPHLEKCMG GR +    +R     +   +  S  S Y
Sbjct: 109 AKKPMDCTCPHCDRLVAAARFAPHLEKCMGMGRISSRIASRRLATKEGASASSSSTSTY 167

[Close]

BLAST of Sed0014404 vs. ExPASy Swiss-Prot
Match: B4LDA6 (SAGA-associated factor 11 homolog OS=Drosophila virilis OX=7244 GN=Sgf11 PE=3 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.7e-07
Identity = 40/119 (33.61%), Postives = 55/119 (46.22%), Query Frame = 0


Query: 16  SSNNFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQARARLIFLD------ 75
           ++N  F  LLD V+  +  E H + + G    L+   EE   SA     +  LD      
Sbjct: 28  AANYLFQGLLDDVVAGIFIEIHHLRKTGNLTALDGVGEENAESAYRICEMPNLDIFGIST 87

Query: 76  --KSIDCM--NCDRSIVAGRFAPHLEKCMGRGRKARLKVTRSSTAAQNRYSRGSPISVY 125
             K +DC   NCDR + A RFAPHLEKCMG GR +    +R     +   +  +  S Y
Sbjct: 88  AKKPMDCTCPNCDRLVAATRFAPHLEKCMGMGRISSRIASRRLATKEGSSASSTSTSTY 146

[Close]

BLAST of Sed0014404 vs. ExPASy TrEMBL
Match: A0A1S3C599 (SAGA-associated factor 11 OS=Cucumis melo OX=3656 GN=LOC103497054 PE=3 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 3.9e-55
Identity = 121/163 (74.23%), Postives = 130/163 (79.75%), Query Frame = 0


Query: 17  SNNFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQARARL----------- 76
           S+N FGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQAR R+           
Sbjct: 16  SSNLFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQARVRVADSSNSSEANG 75

Query: 77  -----IF-------LDKSIDCMNCDRSIVAGRFAPHLEKCMGRGRKARLKVTRSSTAAQN 136
                IF        ++  DCMNC RSI+AGRFAPHLEKCMGRGRKAR KVTRSSTAAQ+
Sbjct: 76  KYVVDIFGQTHPSVANEIFDCMNCGRSIMAGRFAPHLEKCMGRGRKARPKVTRSSTAAQS 135

Query: 137 RYSRGSPISVYSPYPNSTSMNRLPNGTSSLPGEEYSNGTSKDP 157
           RYSRG+P+S YSPYPNSTS NRLPNGTSSL GEEYSNGTS+DP
Sbjct: 136 RYSRGNPVSAYSPYPNSTSTNRLPNGTSSLAGEEYSNGTSEDP 178

[Close]

BLAST of Sed0014404 vs. ExPASy TrEMBL
Match: A0A0A0LYA8 (SAGA-associated factor 11 OS=Cucumis sativus OX=3659 GN=Csa_1G533390 PE=3 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 5.0e-55
Identity = 120/163 (73.62%), Postives = 130/163 (79.75%), Query Frame = 0


Query: 17  SNNFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQARARL----------- 76
           S+N FGDLLDSVIVD+ASECHRIARLGLDRNLEEEEEELRLSAQAR R+           
Sbjct: 16  SSNLFGDLLDSVIVDIASECHRIARLGLDRNLEEEEEELRLSAQARVRVADSSNSSEANG 75

Query: 77  -----IF-------LDKSIDCMNCDRSIVAGRFAPHLEKCMGRGRKARLKVTRSSTAAQN 136
                IF        ++  DCMNC RSI+AGRFAPHLEKCMGRGRKAR KVTRSSTAAQ+
Sbjct: 76  KYVVDIFGQTHPSVANEIFDCMNCGRSIMAGRFAPHLEKCMGRGRKARPKVTRSSTAAQS 135

Query: 137 RYSRGSPISVYSPYPNSTSMNRLPNGTSSLPGEEYSNGTSKDP 157
           RYSRG+P+S YSPYPNSTS NRLPNGTSSL GEEYSNGTS+DP
Sbjct: 136 RYSRGNPVSAYSPYPNSTSTNRLPNGTSSLAGEEYSNGTSEDP 178

[Close]

BLAST of Sed0014404 vs. ExPASy TrEMBL
Match: A0A6J1GAV8 (SAGA-associated factor 11 OS=Cucurbita moschata OX=3662 GN=LOC111452493 PE=3 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 5.6e-54
Identity = 123/172 (71.51%), Postives = 129/172 (75.00%), Query Frame = 0


Query: 8   EQNSNFLLSSNNFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQARARLIF 67
           E N++  LSS NFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQAR R+  
Sbjct: 6   EDNASSQLSS-NFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQARVRVAD 65

Query: 68  LDKS-----------------------IDCMNCDRSIVAGRFAPHLEKCMGRGRKARLKV 127
              S                        DCMNC RSIVAGRFAPHLEKCMGRGRKARLKV
Sbjct: 66  SSNSSEANGKYVVDIFGQNHPSVASEIFDCMNCGRSIVAGRFAPHLEKCMGRGRKARLKV 125

Query: 128 TRSSTAAQNRYSRGSPISVYSPYPNSTSMNRLPNGTSSLPGEEYSNGTSKDP 157
           TRSSTA Q+RYSRGS +S YSPYPNSTS NRLPNGTSSL G EYSNG S +P
Sbjct: 126 TRSSTATQSRYSRGSSVSAYSPYPNSTSTNRLPNGTSSLAGGEYSNGPSGEP 176

[Close]

BLAST of Sed0014404 vs. ExPASy TrEMBL
Match: A0A6J1GAY0 (SAGA-associated factor 11 OS=Cucurbita moschata OX=3662 GN=LOC111452493 PE=3 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 1.2e-53
Identity = 119/163 (73.01%), Postives = 124/163 (76.07%), Query Frame = 0


Query: 17  SNNFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQARARLIFLDKS----- 76
           S+NFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQAR R+     S     
Sbjct: 6   SSNFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQARVRVADSSNSSEANG 65

Query: 77  ------------------IDCMNCDRSIVAGRFAPHLEKCMGRGRKARLKVTRSSTAAQN 136
                              DCMNC RSIVAGRFAPHLEKCMGRGRKARLKVTRSSTA Q+
Sbjct: 66  KYVVDIFGQNHPSVASEIFDCMNCGRSIVAGRFAPHLEKCMGRGRKARLKVTRSSTATQS 125

Query: 137 RYSRGSPISVYSPYPNSTSMNRLPNGTSSLPGEEYSNGTSKDP 157
           RYSRGS +S YSPYPNSTS NRLPNGTSSL G EYSNG S +P
Sbjct: 126 RYSRGSSVSAYSPYPNSTSTNRLPNGTSSLAGGEYSNGPSGEP 168

[Close]

BLAST of Sed0014404 vs. ExPASy TrEMBL
Match: A0A6J1KF62 (SAGA-associated factor 11 OS=Cucurbita maxima OX=3661 GN=LOC111493317 PE=3 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 2.8e-53
Identity = 121/172 (70.35%), Postives = 129/172 (75.00%), Query Frame = 0


Query: 8   EQNSNFLLSSNNFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQARARLIF 67
           E N++  L+S NFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQAR R+  
Sbjct: 30  EDNASSQLAS-NFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQARVRIAD 89

Query: 68  LDKS-----------------------IDCMNCDRSIVAGRFAPHLEKCMGRGRKARLKV 127
              S                        DCMNC RSIVAGRFAPHLEKCMGRGRKARLKV
Sbjct: 90  SSNSSEANSKYVVDIFGQNHPSVASEIFDCMNCGRSIVAGRFAPHLEKCMGRGRKARLKV 149

Query: 128 TRSSTAAQNRYSRGSPISVYSPYPNSTSMNRLPNGTSSLPGEEYSNGTSKDP 157
           TRSSTA Q+RYS+GS +S YSPYPNSTS NRLPNGTSSL G EYSNG S +P
Sbjct: 150 TRSSTATQSRYSQGSSVSAYSPYPNSTSTNRLPNGTSSLAGGEYSNGPSGEP 200

[Close]

BLAST of Sed0014404 vs. TAIR 10
Match: AT5G58575.1 (CONTAINS InterPro DOMAIN/s: Sgf11, transcriptional regulation (InterPro:IPR013246); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 159.8 bits (403), Expect = 1.7e-39
Identity = 94/173 (54.34%), Postives = 115/173 (66.47%), Query Frame = 0


Query: 7   AEQN-SNFLLSSNNFFGDLLDSVIVDVASECHRIARLGLDRNLEEEEEELRLSAQARARL 66
           AE N S+    S+  F DL+DSVI DVASECHR+ARLGLDR+L+  EEELRLS +ARA++
Sbjct: 4   AEDNKSSHAQLSSQIFLDLVDSVIADVASECHRVARLGLDRDLDIVEEELRLSVEARAKI 63

Query: 67  ----------------IF-------LDKSIDCMNCDRSIVAGRFAPHLEKCMGRGRKARL 126
                           IF         +  +CMNC R IVAGRFAPHLEKCMG+GRKAR 
Sbjct: 64  ADPSNNLETNTKYVVDIFGQTHPPVASEVFNCMNCGRQIVAGRFAPHLEKCMGKGRKARA 123

Query: 127 KVTRSSTAAQNRYSRGSPISVYSPYPNSTSMNRLPNGTSSLPGEEYSNGTSKD 156
           K TRS+TAAQNR +R SP   YSPYPNS S N+L +G+  + GE+ SN T ++
Sbjct: 124 KTTRSTTAAQNRNARRSPNPRYSPYPNSASENQLASGSPGVAGEDCSNFTVRE 176

The following BLAST results are available for this feature:

BLAST of Sed0014404 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008457340.1	8.0e-55	74.23	PREDICTED: ataxin-7-like protein 3 [Cucumis melo] >XP_008457341.1 PREDICTED: ata...	[more]
XP_004153719.1	1.0e-54	73.62	SAGA-associated factor 11 [Cucumis sativus] >XP_011658722.1 SAGA-associated fact...	[more]
KAG7037006.1	1.2e-53	71.51	Ataxin-7-like protein 3 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022949027.1	1.2e-53	71.51	SAGA-associated factor 11 homolog isoform X2 [Cucurbita moschata] >XP_023523179....	[more]
XP_022949028.1	2.6e-53	73.01	SAGA-associated factor 11 homolog isoform X3 [Cucurbita moschata]	[more]

BLAST of Sed0014404 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94BV2	2.4e-38	54.34	SAGA-associated factor 11 OS=Arabidopsis thaliana OX=3702 GN=SGF11 PE=1 SV=1	[more]
B1PM81	5.8e-08	34.11	SAGA-associated factor 11 homolog OS=Musca domestica OX=7370 GN=Sgf11 PE=2 SV=1	[more]
B3NHQ1	1.7e-07	30.71	SAGA-associated factor 11 homolog OS=Drosophila erecta OX=7220 GN=Sgf11 PE=3 SV=...	[more]
B4KY72	1.7e-07	33.61	SAGA-associated factor 11 homolog OS=Drosophila mojavensis OX=7230 GN=Sgf11 PE=3...	[more]
B4LDA6	1.7e-07	33.61	SAGA-associated factor 11 homolog OS=Drosophila virilis OX=7244 GN=Sgf11 PE=3 SV...	[more]

BLAST of Sed0014404 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3C599	3.9e-55	74.23	SAGA-associated factor 11 OS=Cucumis melo OX=3656 GN=LOC103497054 PE=3 SV=1	[more]
A0A0A0LYA8	5.0e-55	73.62	SAGA-associated factor 11 OS=Cucumis sativus OX=3659 GN=Csa_1G533390 PE=3 SV=1	[more]
A0A6J1GAV8	5.6e-54	71.51	SAGA-associated factor 11 OS=Cucurbita moschata OX=3662 GN=LOC111452493 PE=3 SV=...	[more]
A0A6J1GAY0	1.2e-53	73.01	SAGA-associated factor 11 OS=Cucurbita moschata OX=3662 GN=LOC111452493 PE=3 SV=...	[more]
A0A6J1KF62	2.8e-53	70.35	SAGA-associated factor 11 OS=Cucurbita maxima OX=3661 GN=LOC111493317 PE=3 SV=1	[more]

BLAST of Sed0014404 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G58575.1	1.7e-39	54.34	CONTAINS InterPro DOMAIN/s: Sgf11, transcriptional regulation (InterPro:IPR01324...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013246	SAGA complex, Sgf11 subunit	PFAM	PF08209	Sgf11	coord: 72..99 e-value: 2.0E-15 score: 56.0
None	No IPR available	GENE3D	3.30.160.60	Classic Zinc Finger	coord: 72..99 e-value: 4.3E-9 score: 37.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 105..150
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 104..156
None	No IPR available	PANTHER	PTHR47674	SAGA-ASSOCIATED FACTOR 11	coord: 71..154 coord: 17..64

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0014404.1	Sed0014404.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006325	chromatin organization
biological_process	GO:0035616	histone H2B conserved C-terminal lysine deubiquitination
biological_process	GO:0016310	phosphorylation
cellular_component	GO:0031969	chloroplast membrane
cellular_component	GO:0071819	DUBm complex
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0070461	SAGA-type complex
molecular_function	GO:0016301	kinase activity
molecular_function	GO:0046872	metal ion binding