Sed0014350 (gene) Chayote v1

Overview


Name	Sed0014350
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Thylakoid soluble phosphoprotein TSP
Location	LG01: 6355326 .. 6356184 (-)
RNA-Seq Expression	Sed0014350
Synteny	Sed0014350

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATATTACTTAAAATGGGGCGGCCCATAATGGAGGAGAGCCGACAGAAGCCCATCCTACAAAGCTACAGAGAATCGACGTGTCGAATCAGCAGCCAAGCGTGGTGGGCGATTAATCGTGAAGCGCACAGCACAGTTGCGGGTTGGTTGGGTAAAGGATAAGGCGCTTGTGGTGAGCTCAAGCGCTTCAACCATCCCAAATCCGCCTCTTATTTTACGCTCTAATATCCCTTCCCTTTTTATTTCCACTTTTTTCTTTGTTTCAAAACAACAACAATGGCCTCTCTTGCCTTCGCATTCTCTCCGGCCGCCGGACGGGTGTTCGCAGCCACGGCGGCGAAGGGCGAAGGCAAGAGCGAAAAGGGCCTTTTTGATTGGATCCTAGGTGGCATGGAGAAAGATCATCTCCTTGAAACCGACCCTGTCCTTCAAAAGGTCGACGGCAAGGGCAGCACCGCCGCCTCCAACGGCGCCAGGAAGAACTCCGTCCAACTCCCCCCCAAGAAAAACGGCGGCTTTGGCGGCCTTTTTGCCAAGAAAGACTGATAGCGCCGCCGTGGATGCCTTTTCACTTACTTATATAATTTCTTTGTATTCAATACTCATGCCCCTTGTTGCCCTTTTGTTGCTTCTCTCTCTCATTACTATTTTTCTCATTATTGTTGGTATTTGGTAATTGTTCCTCTTTTTTCTACTCACATAATGTTGGTTTTATTTCACATTTTAAGGATTGATAGCAATAGAGTGGAAATAGATAAATAAGAAACCAGATAGTCGCGACACAACTTTGGGATTGATTTACAAAATCATTCACCCAGATGTTTATCTTCTGAATTATTGATTTTGAGATGTAAAATCCAT

mRNA sequence

AATATTACTTAAAATGGGGCGGCCCATAATGGAGGAGAGCCGACAGAAGCCCATCCTACAAAGCTACAGAGAATCGACGTGTCGAATCAGCAGCCAAGCGTGGTGGGCGATTAATCGTGAAGCGCACAGCACAGTTGCGGGTTGGTTGGGTAAAGGATAAGGCGCTTGTGGTGAGCTCAAGCGCTTCAACCATCCCAAATCCGCCTCTTATTTTACGCTCTAATATCCCTTCCCTTTTTATTTCCACTTTTTTCTTTGTTTCAAAACAACAACAATGGCCTCTCTTGCCTTCGCATTCTCTCCGGCCGCCGGACGGGTGTTCGCAGCCACGGCGGCGAAGGGCGAAGGCAAGAGCGAAAAGGGCCTTTTTGATTGGATCCTAGGTGGCATGGAGAAAGATCATCTCCTTGAAACCGACCCTGTCCTTCAAAAGGTCGACGGCAAGGGCAGCACCGCCGCCTCCAACGGCGCCAGGAAGAACTCCGTCCAACTCCCCCCCAAGAAAAACGGCGGCTTTGGCGGCCTTTTTGCCAAGAAAGACTGATAGCGCCGCCGTGGATGCCTTTTCACTTACTTATATAATTTCTTTGTATTCAATACTCATGCCCCTTGTTGCCCTTTTGTTGCTTCTCTCTCTCATTACTATTTTTCTCATTATTGTTGGTATTTGGTAATTGTTCCTCTTTTTTCTACTCACATAATGTTGGTTTTATTTCACATTTTAAGGATTGATAGCAATAGAGTGGAAATAGATAAATAAGAAACCAGATAGTCGCGACACAACTTTGGGATTGATTTACAAAATCATTCACCCAGATGTTTATCTTCTGAATTATTGATTTTGAGATGTAAAATCCAT

Coding sequence (CDS)

ATGGCCTCTCTTGCCTTCGCATTCTCTCCGGCCGCCGGACGGGTGTTCGCAGCCACGGCGGCGAAGGGCGAAGGCAAGAGCGAAAAGGGCCTTTTTGATTGGATCCTAGGTGGCATGGAGAAAGATCATCTCCTTGAAACCGACCCTGTCCTTCAAAAGGTCGACGGCAAGGGCAGCACCGCCGCCTCCAACGGCGCCAGGAAGAACTCCGTCCAACTCCCCCCCAAGAAAAACGGCGGCTTTGGCGGCCTTTTTGCCAAGAAAGACTGA

Protein sequence

MASLAFAFSPAAGRVFAATAAKGEGKSEKGLFDWILGGMEKDHLLETDPVLQKVDGKGSTAASNGARKNSVQLPPKKNGGFGGLFAKKD

Homology

[Close]

BLAST of Sed0014350 vs. NCBI nr
Match: XP_022947653.1 (uncharacterized protein LOC111451452 [Cucurbita moschata] >XP_023007425.1 uncharacterized protein LOC111499927 [Cucurbita maxima] >KAG6605422.1 hypothetical protein SDJN03_02739, partial [Cucurbita argyrosperma subsp. sororia] >KAG7035371.1 hypothetical protein SDJN02_02167, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 134.8 bits (338), Expect = 3.6e-28
Identity = 73/95 (76.84%), Postives = 79/95 (83.16%), Query Frame = 0


Query: 1  MASLAFAFSPAAGRVFAATAAK--GEGKSEKGLFDWILGGMEKDHLLETDPVLQKVDGKG 60
          MASL+FAFSPAAGRVFAATAAK  GEGK EKG+ DWILGGMEKD LLETDPVLQKV+GK 
Sbjct: 1  MASLSFAFSPAAGRVFAATAAKGAGEGKKEKGILDWILGGMEKDQLLETDPVLQKVEGKN 60

Query: 61 STAAS----NGARKNSVQLPPKKNGGFGGLFAKKD 90
            A +     G +KNSVQ+PPKKNG FGGLFAKKD
Sbjct: 61 GGANNGGTVRGGKKNSVQVPPKKNGVFGGLFAKKD 95

[Close]

BLAST of Sed0014350 vs. NCBI nr
Match: XP_023532336.1 (uncharacterized protein LOC111794525 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 132.5 bits (332), Expect = 1.8e-27
Identity = 72/95 (75.79%), Postives = 78/95 (82.11%), Query Frame = 0


Query: 1  MASLAFAFSPAAGRVFAATAAK--GEGKSEKGLFDWILGGMEKDHLLETDPVLQKVDGKG 60
          MASL+FAFSPAAGRVFAATAAK  GE K EKG+ DWILGGMEKD LLETDPVLQKV+GK 
Sbjct: 1  MASLSFAFSPAAGRVFAATAAKGAGESKKEKGILDWILGGMEKDQLLETDPVLQKVEGKN 60

Query: 61 STAAS----NGARKNSVQLPPKKNGGFGGLFAKKD 90
            A +     G +KNSVQ+PPKKNG FGGLFAKKD
Sbjct: 61 GGANNGGTVRGGKKNSVQVPPKKNGVFGGLFAKKD 95

[Close]

BLAST of Sed0014350 vs. NCBI nr
Match: KAG7010512.1 (hypothetical protein SDJN02_27306, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 131.3 bits (329), Expect = 4.0e-27
Identity = 69/92 (75.00%), Postives = 78/92 (84.78%), Query Frame = 0


Query: 1  MASLAFAFSPAAGRVFAATAAK--GEGKSEKGLFDWILGGMEKDHLLETDPVLQKVDGKG 60
          MASL  AFSPAAGRVFAATAAK  GE K EKGL DWI+G +E+D LLETDPVLQKV+GK 
Sbjct: 1  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLERDQLLETDPVLQKVEGKD 60

Query: 61 STAAS-NGARKNSVQLPPKKNGGFGGLFAKKD 90
          S + + +G RKNSVQ+PPKKNGGFGGLFAK+D
Sbjct: 61 SNSGTVSGGRKNSVQVPPKKNGGFGGLFAKRD 92

[Close]

BLAST of Sed0014350 vs. NCBI nr
Match: XP_004143212.1 (uncharacterized protein LOC101205268 [Cucumis sativus] >KGN47098.1 hypothetical protein Csa_020752 [Cucumis sativus])

HSP 1 Score: 124.8 bits (312), Expect = 3.8e-25
Identity = 70/97 (72.16%), Postives = 75/97 (77.32%), Query Frame = 0


Query: 1  MASLAFAFSPAAGRVFAATAAK--GEGKSEKGLFDWILGGMEKDHLLETDPVLQKVDGK- 60
          MASL  AFSPAAGRVFAATAAK  GE K EKGL DWI+G + KD LLETDPVLQKV+GK 
Sbjct: 1  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKD 60

Query: 61 ----GSTAASNGARKNSVQLPPKKN-GGFGGLFAKKD 90
                T +  G RKNSVQ+PPKKN GGFGGLFAKKD
Sbjct: 61 AASGNGTGSVRGGRKNSVQVPPKKNGGGFGGLFAKKD 97

[Close]

BLAST of Sed0014350 vs. NCBI nr
Match: XP_008464052.1 (PREDICTED: uncharacterized protein LOC103502033 [Cucumis melo] >KAA0061846.1 uncharacterized protein E6C27_scaffold89G00830 [Cucumis melo var. makuwa] >TYK15410.1 uncharacterized protein E5676_scaffold571G00530 [Cucumis melo var. makuwa])

HSP 1 Score: 123.2 bits (308), Expect = 1.1e-24
Identity = 69/96 (71.88%), Postives = 75/96 (78.12%), Query Frame = 0


Query: 1  MASLAFAFSPAAGRVFAATAAK--GEGKSEKGLFDWILGGMEKDHLLETDPVLQKVDGKG 60
          MASL  AFSPAAGRVFAATAAK  GE K EKGL DWI+G + KD LLETDPVLQKV+GK 
Sbjct: 1  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKD 60

Query: 61 STAASN----GARKNSVQLPPKKNGG-FGGLFAKKD 90
           T+ +       RKNSVQ+PPKKNGG FGGLFAKKD
Sbjct: 61 GTSGNGTGTVRGRKNSVQIPPKKNGGVFGGLFAKKD 96

[Close]

BLAST of Sed0014350 vs. ExPASy TrEMBL
Match: A0A6J1L2X7 (uncharacterized protein LOC111499927 OS=Cucurbita maxima OX=3661 GN=LOC111499927 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 1.8e-28
Identity = 73/95 (76.84%), Postives = 79/95 (83.16%), Query Frame = 0


Query: 1  MASLAFAFSPAAGRVFAATAAK--GEGKSEKGLFDWILGGMEKDHLLETDPVLQKVDGKG 60
          MASL+FAFSPAAGRVFAATAAK  GEGK EKG+ DWILGGMEKD LLETDPVLQKV+GK 
Sbjct: 1  MASLSFAFSPAAGRVFAATAAKGAGEGKKEKGILDWILGGMEKDQLLETDPVLQKVEGKN 60

Query: 61 STAAS----NGARKNSVQLPPKKNGGFGGLFAKKD 90
            A +     G +KNSVQ+PPKKNG FGGLFAKKD
Sbjct: 61 GGANNGGTVRGGKKNSVQVPPKKNGVFGGLFAKKD 95

[Close]

BLAST of Sed0014350 vs. ExPASy TrEMBL
Match: A0A6J1G777 (uncharacterized protein LOC111451452 OS=Cucurbita moschata OX=3662 GN=LOC111451452 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 1.8e-28
Identity = 73/95 (76.84%), Postives = 79/95 (83.16%), Query Frame = 0


Query: 1  MASLAFAFSPAAGRVFAATAAK--GEGKSEKGLFDWILGGMEKDHLLETDPVLQKVDGKG 60
          MASL+FAFSPAAGRVFAATAAK  GEGK EKG+ DWILGGMEKD LLETDPVLQKV+GK 
Sbjct: 1  MASLSFAFSPAAGRVFAATAAKGAGEGKKEKGILDWILGGMEKDQLLETDPVLQKVEGKN 60

Query: 61 STAAS----NGARKNSVQLPPKKNGGFGGLFAKKD 90
            A +     G +KNSVQ+PPKKNG FGGLFAKKD
Sbjct: 61 GGANNGGTVRGGKKNSVQVPPKKNGVFGGLFAKKD 95

[Close]

BLAST of Sed0014350 vs. ExPASy TrEMBL
Match: A0A0A0KC59 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G187910 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 1.8e-25
Identity = 70/97 (72.16%), Postives = 75/97 (77.32%), Query Frame = 0


Query: 1  MASLAFAFSPAAGRVFAATAAK--GEGKSEKGLFDWILGGMEKDHLLETDPVLQKVDGK- 60
          MASL  AFSPAAGRVFAATAAK  GE K EKGL DWI+G + KD LLETDPVLQKV+GK 
Sbjct: 1  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKD 60

Query: 61 ----GSTAASNGARKNSVQLPPKKN-GGFGGLFAKKD 90
                T +  G RKNSVQ+PPKKN GGFGGLFAKKD
Sbjct: 61 AASGNGTGSVRGGRKNSVQVPPKKNGGGFGGLFAKKD 97

[Close]

BLAST of Sed0014350 vs. ExPASy TrEMBL
Match: A0A5A7V5S9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold571G00530 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 5.3e-25
Identity = 69/96 (71.88%), Postives = 75/96 (78.12%), Query Frame = 0


Query: 1  MASLAFAFSPAAGRVFAATAAK--GEGKSEKGLFDWILGGMEKDHLLETDPVLQKVDGKG 60
          MASL  AFSPAAGRVFAATAAK  GE K EKGL DWI+G + KD LLETDPVLQKV+GK 
Sbjct: 1  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKD 60

Query: 61 STAASN----GARKNSVQLPPKKNGG-FGGLFAKKD 90
           T+ +       RKNSVQ+PPKKNGG FGGLFAKKD
Sbjct: 61 GTSGNGTGTVRGRKNSVQIPPKKNGGVFGGLFAKKD 96

[Close]

BLAST of Sed0014350 vs. ExPASy TrEMBL
Match: A0A1S3CKK5 (uncharacterized protein LOC103502033 OS=Cucumis melo OX=3656 GN=LOC103502033 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 5.3e-25
Identity = 69/96 (71.88%), Postives = 75/96 (78.12%), Query Frame = 0


Query: 1  MASLAFAFSPAAGRVFAATAAK--GEGKSEKGLFDWILGGMEKDHLLETDPVLQKVDGKG 60
          MASL  AFSPAAGRVFAATAAK  GE K EKGL DWI+G + KD LLETDPVLQKV+GK 
Sbjct: 1  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKD 60

Query: 61 STAASN----GARKNSVQLPPKKNGG-FGGLFAKKD 90
           T+ +       RKNSVQ+PPKKNGG FGGLFAKKD
Sbjct: 61 GTSGNGTGTVRGRKNSVQIPPKKNGGVFGGLFAKKD 96

The following BLAST results are available for this feature:

BLAST of Sed0014350 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022947653.1	3.6e-28	76.84	uncharacterized protein LOC111451452 [Cucurbita moschata] >XP_023007425.1 unchar...	[more]
XP_023532336.1	1.8e-27	75.79	uncharacterized protein LOC111794525 [Cucurbita pepo subsp. pepo]	[more]
KAG7010512.1	4.0e-27	75.00	hypothetical protein SDJN02_27306, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_004143212.1	3.8e-25	72.16	uncharacterized protein LOC101205268 [Cucumis sativus] >KGN47098.1 hypothetical ...	[more]
XP_008464052.1	1.1e-24	71.88	PREDICTED: uncharacterized protein LOC103502033 [Cucumis melo] >KAA0061846.1 unc...	[more]

BLAST of Sed0014350 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0014350 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1L2X7	1.8e-28	76.84	uncharacterized protein LOC111499927 OS=Cucurbita maxima OX=3661 GN=LOC111499927...	[more]
A0A6J1G777	1.8e-28	76.84	uncharacterized protein LOC111451452 OS=Cucurbita moschata OX=3662 GN=LOC1114514...	[more]
A0A0A0KC59	1.8e-25	72.16	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G187910 PE=4 SV=1	[more]
A0A5A7V5S9	5.3e-25	71.88	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3CKK5	5.3e-25	71.88	uncharacterized protein LOC103502033 OS=Cucumis melo OX=3656 GN=LOC103502033 PE=...	[more]

BLAST of Sed0014350 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021584	Thylakoid soluble phosphoprotein TSP9	PFAM	PF11493	TSP9	coord: 20..87 e-value: 2.4E-18 score: 66.6
IPR021584	Thylakoid soluble phosphoprotein TSP9	PANTHER	PTHR36370	THYLAKOID SOLUBLE PHOSPHOPROTEIN	coord: 1..89
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 55..89
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 57..71
None	No IPR available	PANTHER	PTHR36370:SF1	THYLAKOID SOLUBLE PHOSPHOPROTEIN	coord: 1..89
IPR037244	Thylakoid soluble phosphoprotein TSP9 superfamily	SUPERFAMILY	144256	TSP9-like	coord: 19..89

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0014350.1	Sed0014350.1	mRNA