Sed0014325 (gene) Chayote v1

Overview


Name	Sed0014325
Type	gene
Organism	Sechium edule (Chayote v1)
Description	CTP_transf_like domain-containing protein
Location	Contig00347: 98586 .. 98756 (+)
RNA-Seq Expression	Sed0014325
Synteny	Sed0014325

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTTCAGCAGTTATCCGCTCCGCACTTGGCTACCCAGCGTTTACCGTGGGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACTAGGGAAAGGTCCTCTCAATGCTCTAACGCCCACACCGGATATGGACCGAACTGTCTCACGACGTTCTAA

mRNA sequence

ATGCTTTCAGCAGTTATCCGCTCCGCACTTGGCTACCCAGCGTTTACCGTGGGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACTAGGGAAAGGTCCTCTCAATGCTCTAACGCCCACACCGGATATGGACCGAACTGTCTCACGACGTTCTAA

Coding sequence (CDS)

ATGCTTTCAGCAGTTATCCGCTCCGCACTTGGCTACCCAGCGTTTACCGTGGGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACTAGGGAAAGGTCCTCTCAATGCTCTAACGCCCACACCGGATATGGACCGAACTGTCTCACGACGTTCTAA

Protein sequence

MLSAVIRSALGYPAFTVGTITGTPEVRPSRSSRTRERSSQCSNAHTGYGPNCLTTF

Homology

[Close]

BLAST of Sed0014325 vs. NCBI nr
Match: QCD86281.1 (hypothetical protein DEO72_LG3g802 [Vigna unguiculata] >QCD94281.1 hypothetical protein DEO72_LG5g2364 [Vigna unguiculata] >QCE08899.1 hypothetical protein DEO72_LG10g117 [Vigna unguiculata] >QHN77743.1 uncharacterized protein DS421_19g655380 [Arachis hypogaea])

HSP 1 Score: 114.4 bits (285), Expect = 3.2e-22
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 0


Query: 1  MLSAVIRSALGYPAFTVGTITGTPEVRPSRSSRTRERSSQCSNAHTGYGPNCLTTF 57
          MLSAVIRSALGYPAFTVGTITGTPEVRPSRSSRTRERSSQCSNAHTGYGPNCLTTF
Sbjct: 1  MLSAVIRSALGYPAFTVGTITGTPEVRPSRSSRTRERSSQCSNAHTGYGPNCLTTF 56

[Close]

BLAST of Sed0014325 vs. NCBI nr
Match: PKU72518.1 (hypothetical protein MA16_Dca008573 [Dendrobium catenatum])

HSP 1 Score: 111.3 bits (277), Expect = 2.7e-21
Identity = 55/56 (98.21%), Postives = 55/56 (98.21%), Query Frame = 0


Query: 1  MLSAVIRSALGYPAFTVGTITGTPEVRPSRSSRTRERSSQCSNAHTGYGPNCLTTF 57
          MLSAVIRSALGYPAFTVGTITGTPEVRPSRSSRTRERSSQCSNA TGYGPNCLTTF
Sbjct: 1  MLSAVIRSALGYPAFTVGTITGTPEVRPSRSSRTRERSSQCSNARTGYGPNCLTTF 56

[Close]

BLAST of Sed0014325 vs. NCBI nr
Match: QCE06704.1 (hypothetical protein DEO72_LG9g1718 [Vigna unguiculata])

HSP 1 Score: 110.5 bits (275), Expect = 4.6e-21
Identity = 54/56 (96.43%), Postives = 54/56 (96.43%), Query Frame = 0


Query: 1  MLSAVIRSALGYPAFTVGTITGTPEVRPSRSSRTRERSSQCSNAHTGYGPNCLTTF 57
          MLSAVIRSALGYPAFTVGTITGTPEV PSRSSRTRERSSQCSNAHTGYGPNCLT F
Sbjct: 1  MLSAVIRSALGYPAFTVGTITGTPEVHPSRSSRTRERSSQCSNAHTGYGPNCLTAF 56

[Close]

BLAST of Sed0014325 vs. NCBI nr
Match: KAD7478289.1 (hypothetical protein E3N88_01425 [Mikania micrantha])

HSP 1 Score: 110.2 bits (274), Expect = 6.0e-21
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 1   MLSAVIRSALGYPAFTVGTITGTPEVRPSRSSRTRERSSQCSNAHTGYGPNCLT 55
           MLSAVIRSALGYPAFTVGTITGTPEVRPSRSSRTRERSSQCSNAHTGYGPNCLT
Sbjct: 440 MLSAVIRSALGYPAFTVGTITGTPEVRPSRSSRTRERSSQCSNAHTGYGPNCLT 493

[Close]

BLAST of Sed0014325 vs. NCBI nr
Match: RYQ90670.1 (hypothetical protein Ahy_B09g096703 isoform B [Arachis hypogaea])

HSP 1 Score: 108.6 bits (270), Expect = 1.8e-20
Identity = 54/56 (96.43%), Postives = 54/56 (96.43%), Query Frame = 0


Query: 1  MLSAVIRSALGYPAFTVGTITGTPEVRPSRSSRTRERSSQCSNAHTGYGPNCLTTF 57
          MLSAVIRSALGYPAFTV TITGTPEVRPSRSSRTRERSSQCSNAHTGYG NCLTTF
Sbjct: 1  MLSAVIRSALGYPAFTVDTITGTPEVRPSRSSRTRERSSQCSNAHTGYGSNCLTTF 56

[Close]

BLAST of Sed0014325 vs. ExPASy TrEMBL
Match: A0A4D6LCH7 (Uncharacterized protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG10g117 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.5e-22
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 0


Query: 1  MLSAVIRSALGYPAFTVGTITGTPEVRPSRSSRTRERSSQCSNAHTGYGPNCLTTF 57
          MLSAVIRSALGYPAFTVGTITGTPEVRPSRSSRTRERSSQCSNAHTGYGPNCLTTF
Sbjct: 1  MLSAVIRSALGYPAFTVGTITGTPEVRPSRSSRTRERSSQCSNAHTGYGPNCLTTF 56

[Close]

BLAST of Sed0014325 vs. ExPASy TrEMBL
Match: A0A6B9V8R9 (Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=DS421_19g655380 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.5e-22
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 0


Query: 1  MLSAVIRSALGYPAFTVGTITGTPEVRPSRSSRTRERSSQCSNAHTGYGPNCLTTF 57
          MLSAVIRSALGYPAFTVGTITGTPEVRPSRSSRTRERSSQCSNAHTGYGPNCLTTF
Sbjct: 1  MLSAVIRSALGYPAFTVGTITGTPEVRPSRSSRTRERSSQCSNAHTGYGPNCLTTF 56

[Close]

BLAST of Sed0014325 vs. ExPASy TrEMBL
Match: A0A2I0WA35 (Uncharacterized protein OS=Dendrobium catenatum OX=906689 GN=MA16_Dca008573 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 1.3e-21
Identity = 55/56 (98.21%), Postives = 55/56 (98.21%), Query Frame = 0


Query: 1  MLSAVIRSALGYPAFTVGTITGTPEVRPSRSSRTRERSSQCSNAHTGYGPNCLTTF 57
          MLSAVIRSALGYPAFTVGTITGTPEVRPSRSSRTRERSSQCSNA TGYGPNCLTTF
Sbjct: 1  MLSAVIRSALGYPAFTVGTITGTPEVRPSRSSRTRERSSQCSNARTGYGPNCLTTF 56

[Close]

BLAST of Sed0014325 vs. ExPASy TrEMBL
Match: A0A4D6N1F6 (Uncharacterized protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG9g1718 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 2.2e-21
Identity = 54/56 (96.43%), Postives = 54/56 (96.43%), Query Frame = 0


Query: 1  MLSAVIRSALGYPAFTVGTITGTPEVRPSRSSRTRERSSQCSNAHTGYGPNCLTTF 57
          MLSAVIRSALGYPAFTVGTITGTPEV PSRSSRTRERSSQCSNAHTGYGPNCLT F
Sbjct: 1  MLSAVIRSALGYPAFTVGTITGTPEVHPSRSSRTRERSSQCSNAHTGYGPNCLTAF 56

[Close]

BLAST of Sed0014325 vs. ExPASy TrEMBL
Match: A0A5N6Q117 (CTP_transf_like domain-containing protein OS=Mikania micrantha OX=192012 GN=E3N88_01425 PE=3 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 2.9e-21
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 1   MLSAVIRSALGYPAFTVGTITGTPEVRPSRSSRTRERSSQCSNAHTGYGPNCLT 55
           MLSAVIRSALGYPAFTVGTITGTPEVRPSRSSRTRERSSQCSNAHTGYGPNCLT
Sbjct: 440 MLSAVIRSALGYPAFTVGTITGTPEVRPSRSSRTRERSSQCSNAHTGYGPNCLT 493

The following BLAST results are available for this feature:

BLAST of Sed0014325 vs. NCBI nr


Match Name	E-value	Identity	Description
QCD86281.1	3.2e-22	100.00	hypothetical protein DEO72_LG3g802 [Vigna unguiculata] >QCD94281.1 hypothetical ...	[more]
PKU72518.1	2.7e-21	98.21	hypothetical protein MA16_Dca008573 [Dendrobium catenatum]	[more]
QCE06704.1	4.6e-21	96.43	hypothetical protein DEO72_LG9g1718 [Vigna unguiculata]	[more]
KAD7478289.1	6.0e-21	100.00	hypothetical protein E3N88_01425 [Mikania micrantha]	[more]
RYQ90670.1	1.8e-20	96.43	hypothetical protein Ahy_B09g096703 isoform B [Arachis hypogaea]	[more]

BLAST of Sed0014325 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0014325 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A4D6LCH7	1.5e-22	100.00	Uncharacterized protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG10g117 PE=4 SV=1	[more]
A0A6B9V8R9	1.5e-22	100.00	Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=DS421_19g655380 PE=4 SV=1	[more]
A0A2I0WA35	1.3e-21	98.21	Uncharacterized protein OS=Dendrobium catenatum OX=906689 GN=MA16_Dca008573 PE=4...	[more]
A0A4D6N1F6	2.2e-21	96.43	Uncharacterized protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG9g1718 PE=4 SV=1	[more]
A0A5N6Q117	2.9e-21	100.00	CTP_transf_like domain-containing protein OS=Mikania micrantha OX=192012 GN=E3N8...	[more]

BLAST of Sed0014325 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 35..56
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 20..56

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0014325.1	Sed0014325.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009058	biosynthetic process
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0004650	polygalacturonase activity