Sed0014310 (gene) Chayote v1

Overview


Name	Sed0014310
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Keratin, type II cytoskeletal 1-like
Location	LG11: 23533187 .. 23533504 (-)
RNA-Seq Expression	Sed0014310
Synteny	Sed0014310

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGTCTTCACCGCAGAGAAGCCAATCTGATCTAGTGTTAAAGACGGCAAATGAGAAGATCGTAAATATAGGAAACAAAACTTCCATTGTCAAATTGGATGAAGATAATGTCCTTCTATGGAAACTACAAGTCACCACAGCACTTCGAGAACATGGATTGCTAAGATTTCTAAAGGATAAAGATGAAGTCCCAGCGAAATTTCTGAATGCAGCAAGTTCGTCTGATTCTGATGATGAACGAGTAGTAAATCAAGGGTGTGAAGAAAGGAAACGAGAAGCTAGTATACTACTTTGCGAAAATCAAGAATCTGGTTGA

mRNA sequence

ATGGAGTCTTCACCGCAGAGAAGCCAATCTGATCTAGTGTTAAAGACGGCAAATGAGAAGATCGTAAATATAGGAAACAAAACTTCCATTGTCAAATTGGATGAAGATAATGTCCTTCTATGGAAACTACAAGTCACCACAGCACTTCGAGAACATGGATTGCTAAGATTTCTAAAGGATAAAGATGAAGTCCCAGCGAAATTTCTGAATGCAGCAAGTTCGTCTGATTCTGATGATGAACGAGTAGTAAATCAAGGGTGTGAAGAAAGGAAACGAGAAGCTAGTATACTACTTTGCGAAAATCAAGAATCTGGTTGA

Coding sequence (CDS)

ATGGAGTCTTCACCGCAGAGAAGCCAATCTGATCTAGTGTTAAAGACGGCAAATGAGAAGATCGTAAATATAGGAAACAAAACTTCCATTGTCAAATTGGATGAAGATAATGTCCTTCTATGGAAACTACAAGTCACCACAGCACTTCGAGAACATGGATTGCTAAGATTTCTAAAGGATAAAGATGAAGTCCCAGCGAAATTTCTGAATGCAGCAAGTTCGTCTGATTCTGATGATGAACGAGTAGTAAATCAAGGGTGTGAAGAAAGGAAACGAGAAGCTAGTATACTACTTTGCGAAAATCAAGAATCTGGTTGA

Protein sequence

MESSPQRSQSDLVLKTANEKIVNIGNKTSIVKLDEDNVLLWKLQVTTALREHGLLRFLKDKDEVPAKFLNAASSSDSDDERVVNQGCEERKREASILLCENQESG

Homology

[Close]

BLAST of Sed0014310 vs. NCBI nr
Match: XP_022159146.1 (uncharacterized protein LOC111025572 [Momordica charantia])

HSP 1 Score: 68.2 bits (165), Expect = 4.9e-08
Identity = 31/70 (44.29%), Postives = 50/70 (71.43%), Query Frame = 0


Query: 8  SQSDLVLKTANEKIVNIGNKTSIVKLDEDNVLLWKLQVTTALREHGLLRFLKDKDEVPAK 67
          S++D  +   N  IVN GNK S +KL+++N LLW+LQ+TTAL+ HGL +F+  + ++P++
Sbjct: 6  SETDSTVVNQNSTIVNPGNKISTIKLNDENFLLWRLQITTALQGHGLGKFIDPEAKIPSE 65

Query: 68 FLNAASSSDS 78
          F+ +A  S S
Sbjct: 66 FVQSADESSS 75

[Close]

BLAST of Sed0014310 vs. NCBI nr
Match: KAA0068024.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK18104.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 61.6 bits (148), Expect = 4.6e-06
Identity = 30/78 (38.46%), Postives = 47/78 (60.26%), Query Frame = 0


Query: 20 KIVNIGNKTSIVKLDEDNVLLWKLQVTTALREHGLLRFLKDKDEVPAKFLNAASSSDSDD 79
          +I   GNK S+VKL++DN LLWK Q+ TAL  + +  FL+ + E P K+L +  SS +  
Sbjct: 21 QIFGSGNKISLVKLNDDNFLLWKFQILTALEAYDMENFLESESEPPTKYLTSTGSSSTSA 80

Query: 80 ERVVNQGCEERKREASIL 98
           R  N   +E + E+ ++
Sbjct: 81 TRTPNPEYKESQNESKLI 98

[Close]

BLAST of Sed0014310 vs. NCBI nr
Match: KAA0053143.1 (keratin, type II cytoskeletal 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 56.6 bits (135), Expect = 1.5e-04
Identity = 32/90 (35.56%), Postives = 48/90 (53.33%), Query Frame = 0


Query: 8  SQSDLVLKTANEKIVNIGNKTSIVKLDEDNVLLWKLQVTTALREHGLLRFLKDKDEVPAK 67
          + S L ++     I   GNK S+VKL +DN LLWK Q+ TAL  + L  F + + E P+K
Sbjct: 4  NSSPLGVENTEVSIFGSGNKISLVKLSDDNFLLWKFQILTALEAYDLENFFESELEPPSK 63

Query: 68 FLNAASSSDSDDERVVNQGCEERKREASIL 98
          +L +  SS +   R  N   +  KR   ++
Sbjct: 64 YLTSTGSSSTSATRTPNPEYKVWKRHNRLI 93

[Close]

BLAST of Sed0014310 vs. NCBI nr
Match: KAA0067213.1 (keratin, type II cytoskeletal 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 56.2 bits (134), Expect = 1.9e-04
Identity = 30/78 (38.46%), Postives = 45/78 (57.69%), Query Frame = 0


Query: 20 KIVNIGNKTSIVKLDEDNVLLWKLQVTTALREHGLLRFLKDKDEVPAKFLNAASSSDSDD 79
          +I    NK S+VKL +DN LLWK Q+ TAL  + L  FL+ + E P+K+L +  SS +  
Sbjct: 21 QIFGSSNKISLVKLSDDNFLLWKFQILTALEAYDLENFLESESEPPSKYLISTGSSSASA 80

Query: 80 ERVVNQGCEERKREASIL 98
           R  N   +  KR+  ++
Sbjct: 81 TRTPNPTYKVWKRQDRLI 98

[Close]

BLAST of Sed0014310 vs. NCBI nr
Match: TYK18917.1 (keratin, type II cytoskeletal 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 56.2 bits (134), Expect = 1.9e-04
Identity = 30/78 (38.46%), Postives = 45/78 (57.69%), Query Frame = 0


Query: 20 KIVNIGNKTSIVKLDEDNVLLWKLQVTTALREHGLLRFLKDKDEVPAKFLNAASSSDSDD 79
          +I    NK S+VKL +DN LLWK Q+ TAL  + L  FL+ + E P+K+L +  SS +  
Sbjct: 21 QIFGSSNKISLVKLSDDNFLLWKFQILTALEAYDLENFLESESEPPSKYLISTGSSSASA 80

Query: 80 ERVVNQGCEERKREASIL 98
           R  N   +  KR+  ++
Sbjct: 81 TRTPNPTYKVWKRQDRLI 98

[Close]

BLAST of Sed0014310 vs. ExPASy TrEMBL
Match: A0A6J1E314 (uncharacterized protein LOC111025572 OS=Momordica charantia OX=3673 GN=LOC111025572 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 2.4e-08
Identity = 31/70 (44.29%), Postives = 50/70 (71.43%), Query Frame = 0


Query: 8  SQSDLVLKTANEKIVNIGNKTSIVKLDEDNVLLWKLQVTTALREHGLLRFLKDKDEVPAK 67
          S++D  +   N  IVN GNK S +KL+++N LLW+LQ+TTAL+ HGL +F+  + ++P++
Sbjct: 6  SETDSTVVNQNSTIVNPGNKISTIKLNDENFLLWRLQITTALQGHGLGKFIDPEAKIPSE 65

Query: 68 FLNAASSSDS 78
          F+ +A  S S
Sbjct: 66 FVQSADESSS 75

[Close]

BLAST of Sed0014310 vs. ExPASy TrEMBL
Match: A0A5D3D3G2 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G00260 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 2.2e-06
Identity = 30/78 (38.46%), Postives = 47/78 (60.26%), Query Frame = 0


Query: 20 KIVNIGNKTSIVKLDEDNVLLWKLQVTTALREHGLLRFLKDKDEVPAKFLNAASSSDSDD 79
          +I   GNK S+VKL++DN LLWK Q+ TAL  + +  FL+ + E P K+L +  SS +  
Sbjct: 21 QIFGSGNKISLVKLNDDNFLLWKFQILTALEAYDMENFLESESEPPTKYLTSTGSSSTSA 80

Query: 80 ERVVNQGCEERKREASIL 98
           R  N   +E + E+ ++
Sbjct: 81 TRTPNPEYKESQNESKLI 98

[Close]

BLAST of Sed0014310 vs. ExPASy TrEMBL
Match: A0A5A7UB21 (Keratin, type II cytoskeletal 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1486G00150 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 7.2e-05
Identity = 32/90 (35.56%), Postives = 48/90 (53.33%), Query Frame = 0


Query: 8  SQSDLVLKTANEKIVNIGNKTSIVKLDEDNVLLWKLQVTTALREHGLLRFLKDKDEVPAK 67
          + S L ++     I   GNK S+VKL +DN LLWK Q+ TAL  + L  F + + E P+K
Sbjct: 4  NSSPLGVENTEVSIFGSGNKISLVKLSDDNFLLWKFQILTALEAYDLENFFESELEPPSK 63

Query: 68 FLNAASSSDSDDERVVNQGCEERKREASIL 98
          +L +  SS +   R  N   +  KR   ++
Sbjct: 64 YLTSTGSSSTSATRTPNPEYKVWKRHNRLI 93

[Close]

BLAST of Sed0014310 vs. ExPASy TrEMBL
Match: A0A5D3D5T2 (Keratin, type II cytoskeletal 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold204G001330 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 9.4e-05
Identity = 30/78 (38.46%), Postives = 45/78 (57.69%), Query Frame = 0


Query: 20 KIVNIGNKTSIVKLDEDNVLLWKLQVTTALREHGLLRFLKDKDEVPAKFLNAASSSDSDD 79
          +I    NK S+VKL +DN LLWK Q+ TAL  + L  FL+ + E P+K+L +  SS +  
Sbjct: 21 QIFGSSNKISLVKLSDDNFLLWKFQILTALEAYDLENFLESESEPPSKYLISTGSSSASA 80

Query: 80 ERVVNQGCEERKREASIL 98
           R  N   +  KR+  ++
Sbjct: 81 TRTPNPTYKVWKRQDRLI 98

[Close]

BLAST of Sed0014310 vs. ExPASy TrEMBL
Match: A0A5A7VGJ8 (Keratin, type II cytoskeletal 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold418G00160 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 9.4e-05
Identity = 30/78 (38.46%), Postives = 45/78 (57.69%), Query Frame = 0


Query: 20 KIVNIGNKTSIVKLDEDNVLLWKLQVTTALREHGLLRFLKDKDEVPAKFLNAASSSDSDD 79
          +I    NK S+VKL +DN LLWK Q+ TAL  + L  FL+ + E P+K+L +  SS +  
Sbjct: 21 QIFGSSNKISLVKLSDDNFLLWKFQILTALEAYDLENFLESESEPPSKYLISTGSSSASA 80

Query: 80 ERVVNQGCEERKREASIL 98
           R  N   +  KR+  ++
Sbjct: 81 TRTPNPTYKVWKRQDRLI 98

The following BLAST results are available for this feature:

BLAST of Sed0014310 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022159146.1	4.9e-08	44.29	uncharacterized protein LOC111025572 [Momordica charantia]	[more]
KAA0068024.1	4.6e-06	38.46	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0053143.1	1.5e-04	35.56	keratin, type II cytoskeletal 1-like [Cucumis melo var. makuwa]	[more]
KAA0067213.1	1.9e-04	38.46	keratin, type II cytoskeletal 1-like [Cucumis melo var. makuwa]	[more]
TYK18917.1	1.9e-04	38.46	keratin, type II cytoskeletal 1-like [Cucumis melo var. makuwa]	[more]

BLAST of Sed0014310 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0014310 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E314	2.4e-08	44.29	uncharacterized protein LOC111025572 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
A0A5D3D3G2	2.2e-06	38.46	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7UB21	7.2e-05	35.56	Keratin, type II cytoskeletal 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5D3D5T2	9.4e-05	38.46	Keratin, type II cytoskeletal 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5A7VGJ8	9.4e-05	38.46	Keratin, type II cytoskeletal 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]

BLAST of Sed0014310 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0014310.1	Sed0014310.1	mRNA