Sed0014289 (gene) Chayote v1

Overview
NameSed0014289
Typegene
OrganismSechium edule (Chayote v1)
DescriptionDUF179 domain-containing protein
LocationLG10: 33328 .. 36963 (+)
RNA-Seq ExpressionSed0014289
SyntenySed0014289
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGATCATTCAATTCCGGGAGATGCGCAAATCGAACAATATTTCTGATGGCAACAAAACTAATGAATCTTCTCTCCAAAAATCGCATCATATTAATTTAGACTGGCGAGATTTCAGAGCAAACCTATTTGCTCGTGAGCAGGTGATTTCTCATTCTTTTACTAAATAACACGTTTTTTTGTTCGAAATGAAAACTGATCATACTCCTAATTAGGAAATAGGTATAATCTGGTAATTATGAGATACCATGTTTCTAGCTCACTCAGGATAAAAATGTTCACATAGATGGCTAAAGTTGTATTGCAAAGTTCTGTCAAATAGGTGTGTAACGGCCCGGAAATTTCATCCCGGTCTTCCCGGGAGGCCCAGGGGCATTTTGGTAATTTTGGTTGGGCCGACAGGGCCGGTTATGTAATTGTTAATTGCCGGAAAAATTATGAGTCATTTTGAATGGGATCGGGAATTTTGGTGAAAACATTTGGGCTTGGAAAAAGGTAAAATTAAATAGGGAATTAAATAGTCCGTCGAGTGAGATTCGAGCCAAGGACGCGCTGCATGCTAGGCAAGGGTCGCTGCCAGCCGAGCCACTGGGCGTGTTTGTTATCTTAATCGCGCGACCTTGTATATAAGCGTGTTTTCCTCTGCCTTTGATATAAAGGCCGATCGCCCGAGCTTCTTCCCCATTTTTCTTCTTCTTCCCTCGCGAATTTTCCTCCGACCGACAGCGATTCTCCTTCGCGTTTTCTCCCCCGCCAGCTCCAATTCGACCGAGTTCCTTCCTCAAATCTAAAGCCAAATCTCGAGCAGCTAGTGAGTTTCTTCTTCTCTTCTTCTCCTTCGCATTTCCGTCGACCCATTCCCCTGTTTTTCGAATTCCATTTTTCGGTCGTGTTGAAGTGATTTGTTGGGTGGGTTTTGTGCAGCTGGAGTAGAGGAGTTCGACCAACCATAAATTGCGCGTCGAATCCTCCCCTATCGGCCGAATTCGAGCTTCATTTCCATCGCAAGTCGCGTGCTCTCTCATTCTTGCGTGATCACGAGCCACGCCGCACATCGACGGCGTGCTCGCGCTGCGCGCTTCTCGCCAGACTCCGTGTCACGCCGCGCGCTTGCATCGCATCGCCGCATCCGTCCGTCGGCGTCATGCGTCTTCGCAGCCAGCCCCAACCGGCCCGTTCTTTGCCGTTCGTTCGTGCAATCGGCTCGTTCGTGCAATCGTCTCGTTCGTGCGTTCGTCGCGCCTCGTGAGTTGCTCCCGAGCTGAGCCCTGTTTATTTTATTATATTTAGGCCTATTGTGTGATTTTTGTTGTGATTGATAGGTTCTCGATAGCTAGTTCGAGTTTGTTCGCGACTTAGGATTTTCGTGTCAAATCGTCCCCGACCAAGGTAAGGATTTCTTACCGGAGTTGTGTGGACCCTGCGATATTATATGTGATTGCTGATTGATTGCTTGTTTGTGTTTATTGACATGTGTAGCTAGGTATTCTATTATGAATTCCCGATTAGCATGATTTTCCCTGATTAATTCTCATGTTAATCCATGCTAGGTTGTTCCTTTCTGGCATGCTCGTATCTGTTCCTTGTTTCGTAGTATCATGCTAGGCTCTTTGTATCCTTATGGAGCACGTATTGGATTTTATGGAATTGTTTGCAGATTGCTAGGGCAGGTTAGAGTTGCAGGTAGATAGCATCATCCGGGCCTGATGCATAAAGTACCTTGCATCCATGGCAGGGACGTCGAGACAGTGCTCCGTCCCTAGACCCCGTGAGGGATTAGCTAACCCAAGCGGTAGGCCCTGCAATCTTGGGTGAGGGTGGTAGACTGTTAAATGCCCCAACGGTCGGGATGATGACTTGGCATTGCCTCGTCCCCGGCAGCCGACATGTCCTCAACATGTTTGGCAGTAGCCCCTGATTGCCACCTGTTAAGGTAAGGGCGGTTTCCTGGTGTAAGCCTACCACGACCCGTTTCCTTAGCCTCAGGTGTGGTGGTTCAGGCTGACATAGTTTACGTGTCCAGGTCTCACACCCCTATGTCAGTGACACCGATCTAGAGATTTAGTTAGGCGTGGTGGCCTTGGACATGGGCTGCCTCTGGACCCGGCACCCCCCCAGTCTGCAGATGCACGCGGTACATGCGCTCGCTCATTACGCCCGCCGACCGAGAGCTCATCGGGATCTTGAGCGATGTACCTTTCGTCGACGATGAGACAGTGCCGAGGCCGGGACTTGTTTCTCGTATAGGGCGACTTGTGTGGTGATATTATTCCGGACTAAGACCCTGAGTTGGCATCCGAGGCCCAAGTGTGGGCTAAGCTATGTGCTTTATTCTGTGTTTATATTCATAGCTTGCATACGCTCATCGAGACAGGATTTATATTCGTTACTCACCCTTATTATTGTGGTTTTTCCACAGGTAACCAAGTTGCGAGACAGGATGGCTGAAGGAGGAGCTGTGAACATGGGGCCCAGTCTTCCAACTCTGATTTTTGTATTATGACTCTTTATGTTTTGTTTCCCTGAATGCATGTAGCAGGGCACGCGGAGCCCTAGGATGTTTTGTAAATGTTTTGTGGATTCCAAAGATTTTGTATCTGAAACAGGTTTTGAATGGTTTTTAGTAAATCTCTACGATCGAGTAAACTTTGGAAATGTATTTATCTTGGAGCAGTGCTTGGAAACAGAAACAGTTCCAGTGAAATTGTCTAGTTTTTAAAGGGGTTATTTTGAATGTTTTGTTTTAATTGGAATCCGAAATCATGTCTGTTTAATGTCCTTTACTTTGAATGCATGCATTGGGGTAAGGGCCCATTTAGTGCCCCCTTTCGGGTCGGTCCCTTACAAGGTGTTAATAAGCTATGTTGTAAAATCATCATGGAATGATGTAGTGGTAAAAAGTATCTTTAAGTAACTAAGAGGACATGAGTTTAATCAATTGTGCCCACCAACAAATGAAATATTTTTGTATGAATTTTTCTTGACATAGAAATGTTGTAGGGTTAGGCAGTATGTTCAATCCATAGTGCACACTAAAGCCTAAACCCTTTTTAATTAACAAATTAATTCCAACACACCCTCCACGAATTCCTTGTTTAATAATTTCACTTTTTGTAGTTTTCTTATTTAAAAAATTATCATTTAAAATTATTTCAATTTTTTTTAGATTAAAACTATATATATCTTAAAAAATTAATTATCACACTTTGGGTGTGTTTTCTCAAAAAAAAAAAAAAACACTTTAGTTGATTGCCCAAATTAAAATAAATGATAAGATTGGGAAGGCAAAGTGCGAAAGTTATTGGTTGTGAATATGGGTCTCATTTAAAAATTTATTGTGAAAATGGAGCAATTTAAAAGTAAAGCCCAAAATGGGTTGTGCAAGAGGTTCATAGAGCAAATAGCGATGTAAAACCGAGGGAGTTGAGTGGGTTTGGTTTGGTTTGGTTTGGTTTGGTTTTTGTTTTGCCAATTTTGTTGTTGTTGTGAAACCGCGATCTTCTTCCTCCTGATTTAGGTTTGATTTTCCATGTTTGATCTCTTCTTCCCAGTCTTTCGCTTTCCCTCGAATTGGATCTTCTGCTCGACGCAACTCTAGACGGCTGCCCTGCCGTCATGGAAATCGAAGGAGGTAA

mRNA sequence

ATGGAGATCATTCAATTCCGGGAGATGCGCAAATCGAACAATATTTCTGATGGCAACAAAACTAATGAATCTTCTCTCCAAAAATCGCATCATATTAATTTAGACTGGCGAGATTTCAGAGCAAACCTATTTGCTCGTGAGCAGTCTTTCGCTTTCCCTCGAATTGGATCTTCTGCTCGACGCAACTCTAGACGGCTGCCCTGCCGTCATGGAAATCGAAGGAGGTAA

Coding sequence (CDS)

ATGGAGATCATTCAATTCCGGGAGATGCGCAAATCGAACAATATTTCTGATGGCAACAAAACTAATGAATCTTCTCTCCAAAAATCGCATCATATTAATTTAGACTGGCGAGATTTCAGAGCAAACCTATTTGCTCGTGAGCAGTCTTTCGCTTTCCCTCGAATTGGATCTTCTGCTCGACGCAACTCTAGACGGCTGCCCTGCCGTCATGGAAATCGAAGGAGGTAA

Protein sequence

MEIIQFREMRKSNNISDGNKTNESSLQKSHHINLDWRDFRANLFAREQSFAFPRIGSSARRNSRRLPCRHGNRRR
Homology
[Close]
BLAST of Sed0014289 vs. NCBI nr
Match: XP_022990849.1 (uncharacterized protein LOC111487617 [Cucurbita maxima])

HSP 1 Score: 73.6 bits (179), Expect = 8.4e-10
Identity = 35/39 (89.74%), Postives = 37/39 (94.87%), Query Frame = 0 

Query: 11  KSNNISDGNKTNESSLQKSHHINLDWRDFRANLFAREQS 50
           KSNNISD NKTNESS QKSHHINLDWR+FRANLFAREQ+
Sbjct: 87  KSNNISDANKTNESSSQKSHHINLDWREFRANLFAREQA 125

[Close]
BLAST of Sed0014289 vs. NCBI nr
Match: XP_023550060.1 (uncharacterized protein LOC111808360 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 73.6 bits (179), Expect = 8.4e-10
Identity = 35/39 (89.74%), Postives = 37/39 (94.87%), Query Frame = 0 

Query: 11  KSNNISDGNKTNESSLQKSHHINLDWRDFRANLFAREQS 50
           KSNNISD NKTNESS QKSHHINLDWR+FRANLFAREQ+
Sbjct: 87  KSNNISDANKTNESSSQKSHHINLDWREFRANLFAREQA 125

[Close]
BLAST of Sed0014289 vs. NCBI nr
Match: XP_023522750.1 (uncharacterized protein LOC111786753 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 73.6 bits (179), Expect = 8.4e-10
Identity = 35/39 (89.74%), Postives = 37/39 (94.87%), Query Frame = 0 

Query: 11 KSNNISDGNKTNESSLQKSHHINLDWRDFRANLFAREQS 50
          KSNNISD NKTNESS QKSHHINLDWR+FRANLFAREQ+
Sbjct: 26 KSNNISDANKTNESSSQKSHHINLDWREFRANLFAREQA 64

[Close]
BLAST of Sed0014289 vs. NCBI nr
Match: XP_023550067.1 (uncharacterized protein LOC111808360 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 73.6 bits (179), Expect = 8.4e-10
Identity = 35/39 (89.74%), Postives = 37/39 (94.87%), Query Frame = 0 

Query: 11  KSNNISDGNKTNESSLQKSHHINLDWRDFRANLFAREQS 50
           KSNNISD NKTNESS QKSHHINLDWR+FRANLFAREQ+
Sbjct: 87  KSNNISDANKTNESSSQKSHHINLDWREFRANLFAREQA 125

[Close]
BLAST of Sed0014289 vs. NCBI nr
Match: XP_022954698.1 (uncharacterized protein LOC111456876 [Cucurbita moschata])

HSP 1 Score: 73.6 bits (179), Expect = 8.4e-10
Identity = 35/39 (89.74%), Postives = 37/39 (94.87%), Query Frame = 0 

Query: 11  KSNNISDGNKTNESSLQKSHHINLDWRDFRANLFAREQS 50
           KSNNISD NKTNESS QKSHHINLDWR+FRANLFAREQ+
Sbjct: 87  KSNNISDANKTNESSSQKSHHINLDWREFRANLFAREQA 125

[Close]
BLAST of Sed0014289 vs. ExPASy TrEMBL
Match: A0A6J1JT58 (uncharacterized protein LOC111487617 OS=Cucurbita maxima OX=3661 GN=LOC111487617 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 4.1e-10
Identity = 35/39 (89.74%), Postives = 37/39 (94.87%), Query Frame = 0 

Query: 11  KSNNISDGNKTNESSLQKSHHINLDWRDFRANLFAREQS 50
           KSNNISD NKTNESS QKSHHINLDWR+FRANLFAREQ+
Sbjct: 87  KSNNISDANKTNESSSQKSHHINLDWREFRANLFAREQA 125

[Close]
BLAST of Sed0014289 vs. ExPASy TrEMBL
Match: A0A6J1GRU5 (uncharacterized protein LOC111456876 OS=Cucurbita moschata OX=3662 GN=LOC111456876 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 4.1e-10
Identity = 35/39 (89.74%), Postives = 37/39 (94.87%), Query Frame = 0 

Query: 11  KSNNISDGNKTNESSLQKSHHINLDWRDFRANLFAREQS 50
           KSNNISD NKTNESS QKSHHINLDWR+FRANLFAREQ+
Sbjct: 87  KSNNISDANKTNESSSQKSHHINLDWREFRANLFAREQA 125

[Close]
BLAST of Sed0014289 vs. ExPASy TrEMBL
Match: A0A6J1DG55 (uncharacterized protein LOC111020207 OS=Momordica charantia OX=3673 GN=LOC111020207 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.5e-09
Identity = 34/42 (80.95%), Postives = 38/42 (90.48%), Query Frame = 0 

Query: 8   EMRKSNNISDGNKTNESSLQKSHHINLDWRDFRANLFAREQS 50
           E  KSNN SDGNK+NE+S QKSHHINLDWR+FRANLFAREQ+
Sbjct: 97  EDAKSNNFSDGNKSNETSSQKSHHINLDWREFRANLFAREQA 138

[Close]
BLAST of Sed0014289 vs. ExPASy TrEMBL
Match: A0A6J1JZ91 (uncharacterized protein LOC111489210 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111489210 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 2.9e-08
Identity = 30/39 (76.92%), Postives = 38/39 (97.44%), Query Frame = 0 

Query: 11  KSNNISDGNKTNESSLQKSHHINLDWRDFRANLFAREQS 50
           KSNNISDG+K+NE+S +K+HHINLDWR+FRANLF+REQ+
Sbjct: 144 KSNNISDGSKSNETSSKKAHHINLDWREFRANLFSREQA 182

[Close]
BLAST of Sed0014289 vs. ExPASy TrEMBL
Match: A0A6J1JXJ8 (uncharacterized protein LOC111489210 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111489210 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 2.9e-08
Identity = 30/39 (76.92%), Postives = 38/39 (97.44%), Query Frame = 0 

Query: 11  KSNNISDGNKTNESSLQKSHHINLDWRDFRANLFAREQS 50
           KSNNISDG+K+NE+S +K+HHINLDWR+FRANLF+REQ+
Sbjct: 102 KSNNISDGSKSNETSSKKAHHINLDWREFRANLFSREQA 140

[Close]
BLAST of Sed0014289 vs. TAIR 10
Match: AT1G33780.1 (Protein of unknown function (DUF179) )

HSP 1 Score: 44.3 bits (103), Expect = 5.1e-05
Identity = 20/38 (52.63%), Postives = 28/38 (73.68%), Query Frame = 0 

Query: 11  KSNNISDGNKTNESSLQKSHHINLDWRDFRANLFAREQ 49
           + N  S+GNK+ +S+  KS  +N DWR+FRANLF +EQ
Sbjct: 74  QENKPSNGNKSGDSAAPKSFGLNTDWREFRANLFMKEQ 111

The following BLAST results are available for this feature:
BLAST of Sed0014289 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022990849.18.4e-1089.74uncharacterized protein LOC111487617 [Cucurbita maxima][more]
XP_023550060.18.4e-1089.74uncharacterized protein LOC111808360 isoform X1 [Cucurbita pepo subsp. pepo][more]
XP_023522750.18.4e-1089.74uncharacterized protein LOC111786753 [Cucurbita pepo subsp. pepo][more]
XP_023550067.18.4e-1089.74uncharacterized protein LOC111808360 isoform X2 [Cucurbita pepo subsp. pepo][more]
XP_022954698.18.4e-1089.74uncharacterized protein LOC111456876 [Cucurbita moschata][more]
BLAST of Sed0014289 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Sed0014289 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1JT584.1e-1089.74uncharacterized protein LOC111487617 OS=Cucurbita maxima OX=3661 GN=LOC111487617... [more]
A0A6J1GRU54.1e-1089.74uncharacterized protein LOC111456876 OS=Cucurbita moschata OX=3662 GN=LOC1114568... [more]
A0A6J1DG551.5e-0980.95uncharacterized protein LOC111020207 OS=Momordica charantia OX=3673 GN=LOC111020... [more]
A0A6J1JZ912.9e-0876.92uncharacterized protein LOC111489210 isoform X1 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1JXJ82.9e-0876.92uncharacterized protein LOC111489210 isoform X2 OS=Cucurbita maxima OX=3661 GN=L... [more]
BLAST of Sed0014289 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G33780.15.1e-0552.63Protein of unknown function (DUF179) [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 56..75

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0014289.1Sed0014289.1mRNA