Sed0014225 (gene) Chayote v1

Overview


Name	Sed0014225
Type	gene
Organism	Sechium edule (Chayote v1)
Description	40S ribosomal protein S19
Location	LG09: 35596215 .. 35598932 (+)
RNA-Seq Expression	Sed0014225
Synteny	Sed0014225

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCACCGCCAAGACCGTCAAGGATGTCTCTCCACACGAGTTCGTCAAGGCCTATGCCGCTCATTTGAAGCGATCCGGGAAGGTATCCCATTTGTATCGCTAAATGCATTCATCTACAGAGTTTGGTTTTGGATCGTTGTGAGTATTGTAGGATATCGATTTCGAGAACGGAGTGTGCGATGAATTTGAAGCCCCAACGTTTTCGGTTCTGTTGTGGAGTGTGTTCGATTCTGCATTGTTGCTCTTGTTATCATTGCCTTGATTGTATTTTGAATTCTTAGCGTTATCATTAGTTTTAGGCTGTAGGCGTTTTGATTGATCTGCTCCTGGTTTTCGTCTTCGTTTTAACGTTAATGGGCATTCGAATTATCTGCTATGGCTTAGAGATGTCCACGGGGTGCGGGCTGGGGCGGGGACGGGAAATTGGCTCCCCCCATCGTGTCCTCGTAACCGTATACAATCTCCGTCCCGGCAAAATTCAACTTTTTTTTTTCTGGGGCAGGGTAGCCCGAGGATCAGAATTTTTCCAGTTTGTACTTTTTTTTTTCTTTTTTTCAACAAGGTAGTTAATGGTTAAAGAAAAATATTCATTTCAGCCAATATTTCTTAAAAAAAAAATCTTTCTACAGATTAAATTATTAAAAAAAATGAGAATATAAAATAAAATATTACTAAAAGTAATAATATATATCTAAACGGGGCGGGATCAAGGAAACAAGGATGGAGCCGTTCCTGTTTAGCTGGCTCTCGCTCACTCCCTGTAATCCTAAATCACTGCCCAGGTGTTGCAGGGAAAATGGACCTCCCTACTCTTGTGGGTTAGGTAATGCTTTGAAGGTATGCTCCCTTCAAAGTCTGGAGTTTGAGACTCACCTGTGACATTGTTTCAAAAAAAATTATCATTTTTAGAATTTTAATTTTCTCGCACTTACACTTGGCCTCACGTGTTTCTTTGATCTTATGCATTTTGTAGACAGTTCTTGGTCTTAGGAATTTGTTAGTGACCCACAGAGGTTGTATGTTTCTAGGATTTAACTCGTCTTAGGAAGAATTTATACATGTTTCCTATCAATAAGACAACACTTTATGGAACTCTTTTTTGAATCTCTCTGGTTTGGATACTCGTTTTTGTTCCCAATGATTAGACATGCTGTATTTTGTTTTTGATTGGTTAGAACATTCTACATTATATCTTCCTTGATTAGTTGCAGTATTTTTACCAATAAATCAATTATGGTCTGTAAGGTTTGTTGTTTAAAGTTTTTTTTTTTTGCATAATTATGAGCAGGTTGAACTTCCACCATGGACCGATATTGTTAAGACTGCAAGGTTCAAAGAGCTTGCTCCTTATGATGCCGACTGGTATTATGTGAGAGCTGGTTAGTATCCTCTTCCTGTTTTGGCTTCCATTTCTTCATATGGAATAAACAAATTTGACTTAAAATAATGTCTGTCATTATGCATGCTTTGTCTGTGGCATTCACATGATCACTTTTTCCAAATGATTTAGCATCCATGGCAAGGAAGATCTACTTGAGGGGAGGTCTTGGTGTGGGTGCATTCAAGAGGATTTATGGTGGAAGTAAGAGGAACGGCAGTCGCCCTCCACACTTTTGCGAAAGCAGCGGTGCCATTGCCCGTCACATTTTACAACAGTTGCAGGAGTTGAACATTGTAGATGTTGACCCAAAGGGGTAAGTACAAAATTCTTATAATCATCTTAGTTGTAAAACAGCTTCTCGACTTCATGATATTTTATGCGATTGGTTTTAATCTTTTAAAAGGCTATCGAGAGTTGCACAACTTGTGAGGCTTGTCATGGCGCAAGGTTTTAACTGGATTGTATGAGATTTATGCCTCTCGTTGTAGAGGATCTTGTATAATGGTTAAAATAATAGTATTAATTATTTCTTCAGAAATATTAGGGTTTTATTCATAATAATTTGAACGATTAGTCTATTGCTATTATTACTTAGGCTTTACAAACAGTTGAAAACACAAAAATTGTACCAGAACTCAAACATATTTTAAATTTTATAATTAATTTTTAATGAGCTTCCTTGACATCTAAATGTTGTAGGGTTAGGTAGTTTGTCTCTTGAGAATAATTAACATTAGCTATCCCAAACACTCTAAGTTACAAAAATTTATAAAAATAAATAAATATGTTAGTGATAGTAATAGTGATAGAGGTGGTGCAAGTGGTTGAAGATATGGCTTTGACGGTAAGCTCCCCTTTAAGGTATCAGATTTGATACTCACTTGTGGCATTAATTTGTAGACAGCTCTCATGTCTCCATTCCTTCGATGTCTCTTGGCGTCTAGCCTAGGGATGGACGTGGTCATCCTTGTTTAAAAAAAAATAGTGATATTAAAGATATCCTATTAGAAATTATGTCTAAGTGGCAATTGCGGGGTGATGTTTTTTTTTTATATAGTTTTATGTAAATATTATGTTATGCAAGACTTGTCTGCTCATCTTTAGGATTTATATAAAAATGGAGGCTTATTATTCTTCATACATCCTTGAGGCTTGAGGTTGCTCTTTAACTTTTTAAAACATTGATTGGTTTCAAGTCATTTGTTACAACATTTTTATAATCTATTGAAACATTTATTGATAATCTGAATGGGATTTTGCAGTGGTCGGAGAATTACATCAAGCGGTCGACGCGATCTTGATCAAGTCGCGGGCCGAATTGTCGTTGCCCCTTGA

mRNA sequence

ATGGCCACCGCCAAGACCGTCAAGGATGTCTCTCCACACGAGTTCGTCAAGGCCTATGCCGCTCATTTGAAGCGATCCGGGAAGGTTGAACTTCCACCATGGACCGATATTGTTAAGACTGCAAGGTTCAAAGAGCTTGCTCCTTATGATGCCGACTGGTATTATGTGAGAGCTGCATCCATGGCAAGGAAGATCTACTTGAGGGGAGGTCTTGGTGTGGGTGCATTCAAGAGGATTTATGGTGGAAGTAAGAGGAACGGCAGTCGCCCTCCACACTTTTGCGAAAGCAGCGGTGCCATTGCCCGTCACATTTTACAACAGTTGCAGGAGTTGAACATTGTAGATGTTGACCCAAAGGGTGGTCGGAGAATTACATCAAGCGGTCGACGCGATCTTGATCAAGTCGCGGGCCGAATTGTCGTTGCCCCTTGA

Coding sequence (CDS)

ATGGCCACCGCCAAGACCGTCAAGGATGTCTCTCCACACGAGTTCGTCAAGGCCTATGCCGCTCATTTGAAGCGATCCGGGAAGGTTGAACTTCCACCATGGACCGATATTGTTAAGACTGCAAGGTTCAAAGAGCTTGCTCCTTATGATGCCGACTGGTATTATGTGAGAGCTGCATCCATGGCAAGGAAGATCTACTTGAGGGGAGGTCTTGGTGTGGGTGCATTCAAGAGGATTTATGGTGGAAGTAAGAGGAACGGCAGTCGCCCTCCACACTTTTGCGAAAGCAGCGGTGCCATTGCCCGTCACATTTTACAACAGTTGCAGGAGTTGAACATTGTAGATGTTGACCCAAAGGGTGGTCGGAGAATTACATCAAGCGGTCGACGCGATCTTGATCAAGTCGCGGGCCGAATTGTCGTTGCCCCTTGA

Protein sequence

MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQELNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP

Homology

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BLAST of Sed0014225 vs. NCBI nr
Match: XP_004141465.1 (40S ribosomal protein S19-3 [Cucumis sativus] >XP_008459377.1 PREDICTED: 40S ribosomal protein S19-3 [Cucumis melo] >XP_038890519.1 40S ribosomal protein S19-3 [Benincasa hispida] >KAA0039442.1 40S ribosomal protein S19-3-like [Cucumis melo var. makuwa] >KGN52503.1 hypothetical protein Csa_008239 [Cucumis sativus] >TYK00631.1 40S ribosomal protein S19-3-like [Cucumis melo var. makuwa])

HSP 1 Score: 290.8 bits (743), Expect = 6.4e-75
Identity = 141/143 (98.60%), Postives = 143/143 (100.00%), Query Frame = 0


Query: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYVRAAS 60
           MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYY+RAAS
Sbjct: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYLRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQELNIVDVDPKG 120
           MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQE+NIVDVDPKG
Sbjct: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120

Query: 121 GRRITSSGRRDLDQVAGRIVVAP 144
           GRRITSSGRRDLDQVAGRIVVAP
Sbjct: 121 GRRITSSGRRDLDQVAGRIVVAP 143

[Close]

BLAST of Sed0014225 vs. NCBI nr
Match: XP_022923365.1 (40S ribosomal protein S19-3-like [Cucurbita moschata] >XP_022991009.1 40S ribosomal protein S19-3-like [Cucurbita maxima] >XP_023513208.1 40S ribosomal protein S19-3-like [Cucurbita pepo subsp. pepo] >KAG6602529.1 40S ribosomal protein S19-3, partial [Cucurbita argyrosperma subsp. sororia] >KAG7033203.1 40S ribosomal protein S19-3, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 290.0 bits (741), Expect = 1.1e-74
Identity = 141/143 (98.60%), Postives = 142/143 (99.30%), Query Frame = 0


Query: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYVRAAS 60
           MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYD DWYYVRAAS
Sbjct: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQELNIVDVDPKG 120
           MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQE+NIVDVDPKG
Sbjct: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120

Query: 121 GRRITSSGRRDLDQVAGRIVVAP 144
           GRRITSSGRRDLDQVAGRIVVAP
Sbjct: 121 GRRITSSGRRDLDQVAGRIVVAP 143

[Close]

BLAST of Sed0014225 vs. NCBI nr
Match: KAG6593129.1 (Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 288.9 bits (738), Expect = 2.4e-74
Identity = 140/143 (97.90%), Postives = 142/143 (99.30%), Query Frame = 0


Query: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYVRAAS 60
           MATA+TVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYD DWYYVRAAS
Sbjct: 542 MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 601

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQELNIVDVDPKG 120
           MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQE+NIVDVDPKG
Sbjct: 602 MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 661

Query: 121 GRRITSSGRRDLDQVAGRIVVAP 144
           GRRITSSGRRDLDQVAGRIVVAP
Sbjct: 662 GRRITSSGRRDLDQVAGRIVVAP 684

[Close]

BLAST of Sed0014225 vs. NCBI nr
Match: XP_022954406.1 (40S ribosomal protein S19-3-like [Cucurbita moschata] >XP_022960517.1 40S ribosomal protein S19-3-like [Cucurbita moschata] >XP_022992561.1 40S ribosomal protein S19-3-like [Cucurbita maxima] >XP_023004681.1 40S ribosomal protein S19-3-like [Cucurbita maxima] >XP_023547478.1 40S ribosomal protein S19-3-like [Cucurbita pepo subsp. pepo] >KAG6575902.1 40S ribosomal protein S19-3, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014435.1 40S ribosomal protein S19-3 [Cucurbita argyrosperma subsp. argyrosperma] >KAG7027262.1 40S ribosomal protein S19-3 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 288.9 bits (738), Expect = 2.4e-74
Identity = 140/143 (97.90%), Postives = 142/143 (99.30%), Query Frame = 0


Query: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYVRAAS 60
           MATA+TVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYD DWYYVRAAS
Sbjct: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQELNIVDVDPKG 120
           MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQE+NIVDVDPKG
Sbjct: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120

Query: 121 GRRITSSGRRDLDQVAGRIVVAP 144
           GRRITSSGRRDLDQVAGRIVVAP
Sbjct: 121 GRRITSSGRRDLDQVAGRIVVAP 143

[Close]

BLAST of Sed0014225 vs. NCBI nr
Match: XP_022938991.1 (40S ribosomal protein S19-3 [Cucurbita moschata] >XP_022993681.1 40S ribosomal protein S19-3 [Cucurbita maxima] >XP_023549630.1 40S ribosomal protein S19-3 [Cucurbita pepo subsp. pepo] >KAG7016113.1 40S ribosomal protein S19-3 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 288.9 bits (738), Expect = 2.4e-74
Identity = 140/143 (97.90%), Postives = 142/143 (99.30%), Query Frame = 0


Query: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYVRAAS 60
           MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYD DWYYVRAAS
Sbjct: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQELNIVDVDPKG 120
           MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQE+NIVDVDPKG
Sbjct: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120

Query: 121 GRRITSSGRRDLDQVAGRIVVAP 144
           GR+ITSSGRRDLDQVAGRIVVAP
Sbjct: 121 GRKITSSGRRDLDQVAGRIVVAP 143

[Close]

BLAST of Sed0014225 vs. ExPASy Swiss-Prot
Match: Q9FNP8 (40S ribosomal protein S19-3 OS=Arabidopsis thaliana OX=3702 GN=RPS19C PE=2 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 3.5e-68
Identity = 121/142 (85.21%), Postives = 132/142 (92.96%), Query Frame = 0


Query: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYVRAAS 60
           MAT KTVKDVSPHEFVKAYAAHLKRSGK+ELP WTDIVKT + KELAPYD DWYY+RAAS
Sbjct: 1   MATGKTVKDVSPHEFVKAYAAHLKRSGKIELPLWTDIVKTGKLKELAPYDPDWYYIRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQELNIVDVDPKG 120
           MARK+YLRGGLGVGAF+RIYGGSKRNGSRPPHFC+SSG +ARHILQQLQ +NIVD+D KG
Sbjct: 61  MARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGVARHILQQLQTMNIVDLDTKG 120

Query: 121 GRRITSSGRRDLDQVAGRIVVA 143
           GR+ITSSG+RDLDQVAGRI  A
Sbjct: 121 GRKITSSGQRDLDQVAGRIAAA 142

[Close]

BLAST of Sed0014225 vs. ExPASy Swiss-Prot
Match: Q9SGA6 (40S ribosomal protein S19-1 OS=Arabidopsis thaliana OX=3702 GN=RPS19A PE=2 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 4.6e-68
Identity = 120/143 (83.92%), Postives = 133/143 (93.01%), Query Frame = 0


Query: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYVRAAS 60
           MAT KTVKDVSPH+FVKAYA+HLKRSGK+ELP WTDIVKT + KELAPYD DWYY+RAAS
Sbjct: 1   MATGKTVKDVSPHDFVKAYASHLKRSGKIELPTWTDIVKTGKLKELAPYDPDWYYIRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQELNIVDVDPKG 120
           MARK+YLRGGLGVGAF+RIYGGSKRNGSRPPHFC+SSG IARHILQQL+ +NIV++D KG
Sbjct: 61  MARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMNIVELDTKG 120

Query: 121 GRRITSSGRRDLDQVAGRIVVAP 144
           GRRITSSG+RDLDQVAGRI V P
Sbjct: 121 GRRITSSGQRDLDQVAGRIAVEP 143

[Close]

BLAST of Sed0014225 vs. ExPASy Swiss-Prot
Match: Q9LF30 (40S ribosomal protein S19-2 OS=Arabidopsis thaliana OX=3702 GN=RPS19B PE=2 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 1.9e-66
Identity = 119/139 (85.61%), Postives = 131/139 (94.24%), Query Frame = 0


Query: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYVRAAS 60
           MAT KTVKDVSPH+FVKAYA+HLKRSGK+ELP WTDIVKT R KELAPYD DWYY+RAAS
Sbjct: 1   MATGKTVKDVSPHDFVKAYASHLKRSGKIELPLWTDIVKTGRLKELAPYDPDWYYIRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQELNIVDVDPKG 120
           MARKIYLRGGLGVGAF+RIYGGSKRNGSRPPHFC+SSG IARHILQQL+ ++IV++D KG
Sbjct: 61  MARKIYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMSIVELDTKG 120

Query: 121 GRRITSSGRRDLDQVAGRI 140
           GRRITSSG+RDLDQVAGRI
Sbjct: 121 GRRITSSGQRDLDQVAGRI 139

[Close]

BLAST of Sed0014225 vs. ExPASy Swiss-Prot
Match: P40978 (40S ribosomal protein S19 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS19A PE=2 SV=1)

HSP 1 Score: 239.2 bits (609), Expect = 2.9e-62
Identity = 111/140 (79.29%), Postives = 128/140 (91.43%), Query Frame = 0


Query: 2   ATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYVRAASM 61
           +TA+TVKDV+PHEFVKAY+AHLKRSGK+ELP W DIVKTARFKEL PYD DWYY RAAS+
Sbjct: 4   STARTVKDVNPHEFVKAYSAHLKRSGKMELPEWVDIVKTARFKELPPYDPDWYYTRAASI 63

Query: 62  ARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQELNIVDVDPKGG 121
           ARKIYLR G+GVG F++IYGG +RNGSRPPHFC+SSGAI+R+ILQQLQ++ I+DVDPKGG
Sbjct: 64  ARKIYLRQGIGVGGFQKIYGGRQRNGSRPPHFCKSSGAISRNILQQLQKMGIIDVDPKGG 123

Query: 122 RRITSSGRRDLDQVAGRIVV 142
           R ITS GRRDLDQVAGR+ V
Sbjct: 124 RLITSQGRRDLDQVAGRVDV 143

[Close]

BLAST of Sed0014225 vs. ExPASy Swiss-Prot
Match: Q94613 (40S ribosomal protein S19 OS=Mya arenaria OX=6604 GN=RPS19 PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 5.5e-45
Identity = 77/134 (57.46%), Postives = 109/134 (81.34%), Query Frame = 0


Query: 6   TVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYVRAASMARKI 65
           +VKDVS HEF +A+AA LK+SGK+++P WTD VKT  FKEL+PY+ DWY++RAAS+ R +
Sbjct: 4   SVKDVSSHEFTRAFAAFLKKSGKMKVPEWTDFVKTGMFKELSPYEPDWYFIRAASICRHL 63

Query: 66  YLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQELNIVDVDPKGGRRIT 125
           Y+R   G+G+F++IYGG +R G+ P HFC+++G+I+R +LQ L+ L IV+ DP GGRR+T
Sbjct: 64  YIRSPAGIGSFEKIYGGRRRRGTAPSHFCKANGSISRRLLQSLEGLKIVEKDPNGGRRLT 123

Query: 126 SSGRRDLDQVAGRI 140
           S GRRDLD++A +I
Sbjct: 124 SQGRRDLDRIAAQI 137

[Close]

BLAST of Sed0014225 vs. ExPASy TrEMBL
Match: A0A5A7T7J1 (40S ribosomal protein S19-3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G002520 PE=3 SV=1)

HSP 1 Score: 290.8 bits (743), Expect = 3.1e-75
Identity = 141/143 (98.60%), Postives = 143/143 (100.00%), Query Frame = 0


Query: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYVRAAS 60
           MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYY+RAAS
Sbjct: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYLRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQELNIVDVDPKG 120
           MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQE+NIVDVDPKG
Sbjct: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120

Query: 121 GRRITSSGRRDLDQVAGRIVVAP 144
           GRRITSSGRRDLDQVAGRIVVAP
Sbjct: 121 GRRITSSGRRDLDQVAGRIVVAP 143

[Close]

BLAST of Sed0014225 vs. ExPASy TrEMBL
Match: A0A0A0KSI3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G638420 PE=3 SV=1)

HSP 1 Score: 290.8 bits (743), Expect = 3.1e-75
Identity = 141/143 (98.60%), Postives = 143/143 (100.00%), Query Frame = 0


Query: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYVRAAS 60
           MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYY+RAAS
Sbjct: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYLRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQELNIVDVDPKG 120
           MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQE+NIVDVDPKG
Sbjct: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120

Query: 121 GRRITSSGRRDLDQVAGRIVVAP 144
           GRRITSSGRRDLDQVAGRIVVAP
Sbjct: 121 GRRITSSGRRDLDQVAGRIVVAP 143

[Close]

BLAST of Sed0014225 vs. ExPASy TrEMBL
Match: A0A1S3CB93 (40S ribosomal protein S19-3 OS=Cucumis melo OX=3656 GN=LOC103498526 PE=3 SV=1)

HSP 1 Score: 290.8 bits (743), Expect = 3.1e-75
Identity = 141/143 (98.60%), Postives = 143/143 (100.00%), Query Frame = 0


Query: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYVRAAS 60
           MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYY+RAAS
Sbjct: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYLRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQELNIVDVDPKG 120
           MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQE+NIVDVDPKG
Sbjct: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120

Query: 121 GRRITSSGRRDLDQVAGRIVVAP 144
           GRRITSSGRRDLDQVAGRIVVAP
Sbjct: 121 GRRITSSGRRDLDQVAGRIVVAP 143

[Close]

BLAST of Sed0014225 vs. ExPASy TrEMBL
Match: A0A6J1JTL0 (40S ribosomal protein S19-3-like OS=Cucurbita maxima OX=3661 GN=LOC111487728 PE=3 SV=1)

HSP 1 Score: 290.0 bits (741), Expect = 5.3e-75
Identity = 141/143 (98.60%), Postives = 142/143 (99.30%), Query Frame = 0


Query: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYVRAAS 60
           MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYD DWYYVRAAS
Sbjct: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQELNIVDVDPKG 120
           MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQE+NIVDVDPKG
Sbjct: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120

Query: 121 GRRITSSGRRDLDQVAGRIVVAP 144
           GRRITSSGRRDLDQVAGRIVVAP
Sbjct: 121 GRRITSSGRRDLDQVAGRIVVAP 143

[Close]

BLAST of Sed0014225 vs. ExPASy TrEMBL
Match: A0A6J1EBL3 (40S ribosomal protein S19-3-like OS=Cucurbita moschata OX=3662 GN=LOC111431083 PE=3 SV=1)

HSP 1 Score: 290.0 bits (741), Expect = 5.3e-75
Identity = 141/143 (98.60%), Postives = 142/143 (99.30%), Query Frame = 0


Query: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYVRAAS 60
           MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYD DWYYVRAAS
Sbjct: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQELNIVDVDPKG 120
           MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQE+NIVDVDPKG
Sbjct: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120

Query: 121 GRRITSSGRRDLDQVAGRIVVAP 144
           GRRITSSGRRDLDQVAGRIVVAP
Sbjct: 121 GRRITSSGRRDLDQVAGRIVVAP 143

[Close]

BLAST of Sed0014225 vs. TAIR 10
Match: AT5G61170.1 (Ribosomal protein S19e family protein )

HSP 1 Score: 258.8 bits (660), Expect = 2.5e-69
Identity = 121/142 (85.21%), Postives = 132/142 (92.96%), Query Frame = 0


Query: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYVRAAS 60
           MAT KTVKDVSPHEFVKAYAAHLKRSGK+ELP WTDIVKT + KELAPYD DWYY+RAAS
Sbjct: 1   MATGKTVKDVSPHEFVKAYAAHLKRSGKIELPLWTDIVKTGKLKELAPYDPDWYYIRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQELNIVDVDPKG 120
           MARK+YLRGGLGVGAF+RIYGGSKRNGSRPPHFC+SSG +ARHILQQLQ +NIVD+D KG
Sbjct: 61  MARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGVARHILQQLQTMNIVDLDTKG 120

Query: 121 GRRITSSGRRDLDQVAGRIVVA 143
           GR+ITSSG+RDLDQVAGRI  A
Sbjct: 121 GRKITSSGQRDLDQVAGRIAAA 142

[Close]

BLAST of Sed0014225 vs. TAIR 10
Match: AT3G02080.1 (Ribosomal protein S19e family protein )

HSP 1 Score: 258.5 bits (659), Expect = 3.3e-69
Identity = 120/143 (83.92%), Postives = 133/143 (93.01%), Query Frame = 0


Query: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYVRAAS 60
           MAT KTVKDVSPH+FVKAYA+HLKRSGK+ELP WTDIVKT + KELAPYD DWYY+RAAS
Sbjct: 1   MATGKTVKDVSPHDFVKAYASHLKRSGKIELPTWTDIVKTGKLKELAPYDPDWYYIRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQELNIVDVDPKG 120
           MARK+YLRGGLGVGAF+RIYGGSKRNGSRPPHFC+SSG IARHILQQL+ +NIV++D KG
Sbjct: 61  MARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMNIVELDTKG 120

Query: 121 GRRITSSGRRDLDQVAGRIVVAP 144
           GRRITSSG+RDLDQVAGRI V P
Sbjct: 121 GRRITSSGQRDLDQVAGRIAVEP 143

[Close]

BLAST of Sed0014225 vs. TAIR 10
Match: AT5G15520.1 (Ribosomal protein S19e family protein )

HSP 1 Score: 253.1 bits (645), Expect = 1.4e-67
Identity = 119/139 (85.61%), Postives = 131/139 (94.24%), Query Frame = 0


Query: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYVRAAS 60
           MAT KTVKDVSPH+FVKAYA+HLKRSGK+ELP WTDIVKT R KELAPYD DWYY+RAAS
Sbjct: 1   MATGKTVKDVSPHDFVKAYASHLKRSGKIELPLWTDIVKTGRLKELAPYDPDWYYIRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQELNIVDVDPKG 120
           MARKIYLRGGLGVGAF+RIYGGSKRNGSRPPHFC+SSG IARHILQQL+ ++IV++D KG
Sbjct: 61  MARKIYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMSIVELDTKG 120

Query: 121 GRRITSSGRRDLDQVAGRI 140
           GRRITSSG+RDLDQVAGRI
Sbjct: 121 GRRITSSGQRDLDQVAGRI 139

The following BLAST results are available for this feature:

BLAST of Sed0014225 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004141465.1	6.4e-75	98.60	40S ribosomal protein S19-3 [Cucumis sativus] >XP_008459377.1 PREDICTED: 40S rib...	[more]
XP_022923365.1	1.1e-74	98.60	40S ribosomal protein S19-3-like [Cucurbita moschata] >XP_022991009.1 40S riboso...	[more]
KAG6593129.1	2.4e-74	97.90	Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita a...	[more]
XP_022954406.1	2.4e-74	97.90	40S ribosomal protein S19-3-like [Cucurbita moschata] >XP_022960517.1 40S riboso...	[more]
XP_022938991.1	2.4e-74	97.90	40S ribosomal protein S19-3 [Cucurbita moschata] >XP_022993681.1 40S ribosomal p...	[more]

BLAST of Sed0014225 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FNP8	3.5e-68	85.21	40S ribosomal protein S19-3 OS=Arabidopsis thaliana OX=3702 GN=RPS19C PE=2 SV=1	[more]
Q9SGA6	4.6e-68	83.92	40S ribosomal protein S19-1 OS=Arabidopsis thaliana OX=3702 GN=RPS19A PE=2 SV=1	[more]
Q9LF30	1.9e-66	85.61	40S ribosomal protein S19-2 OS=Arabidopsis thaliana OX=3702 GN=RPS19B PE=2 SV=1	[more]
P40978	2.9e-62	79.29	40S ribosomal protein S19 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS19A PE=...	[more]
Q94613	5.5e-45	57.46	40S ribosomal protein S19 OS=Mya arenaria OX=6604 GN=RPS19 PE=2 SV=1	[more]

BLAST of Sed0014225 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T7J1	3.1e-75	98.60	40S ribosomal protein S19-3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A0A0KSI3	3.1e-75	98.60	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G638420 PE=3 SV=1	[more]
A0A1S3CB93	3.1e-75	98.60	40S ribosomal protein S19-3 OS=Cucumis melo OX=3656 GN=LOC103498526 PE=3 SV=1	[more]
A0A6J1JTL0	5.3e-75	98.60	40S ribosomal protein S19-3-like OS=Cucurbita maxima OX=3661 GN=LOC111487728 PE=...	[more]
A0A6J1EBL3	5.3e-75	98.60	40S ribosomal protein S19-3-like OS=Cucurbita moschata OX=3662 GN=LOC111431083 P...	[more]

BLAST of Sed0014225 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G61170.1	2.5e-69	85.21	Ribosomal protein S19e family protein	[more]
AT3G02080.1	3.3e-69	83.92	Ribosomal protein S19e family protein	[more]
AT5G15520.1	1.4e-67	85.61	Ribosomal protein S19e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001266	Ribosomal protein S19e	SMART	SM01413	Ribosomal_S19e_2	coord: 6..142 e-value: 9.0E-84 score: 294.3
IPR001266	Ribosomal protein S19e	PFAM	PF01090	Ribosomal_S19e	coord: 6..140 e-value: 4.6E-56 score: 188.3
IPR001266	Ribosomal protein S19e	PANTHER	PTHR11710	40S RIBOSOMAL PROTEIN S19	coord: 3..142
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 1..142 e-value: 1.8E-70 score: 237.9
None	No IPR available	PANTHER	PTHR11710:SF20	40S RIBOSOMAL PROTEIN S19-3	coord: 3..142
IPR018277	Ribosomal protein S19e, conserved site	PROSITE	PS00628	RIBOSOMAL_S19E	coord: 90..109
IPR036390	Winged helix DNA-binding domain superfamily	SUPERFAMILY	46785	"Winged helix" DNA-binding domain	coord: 6..141

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0014225.1	Sed0014225.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000028	ribosomal small subunit assembly
biological_process	GO:0006412	translation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome