Sed0014141 (gene) Chayote v1

Overview


Name	Sed0014141
Type	gene
Organism	Sechium edule (Chayote v1)
Description	serine/arginine-rich-splicing factor SR34-like
Location	LG09: 36611065 .. 36616308 (-)
RNA-Seq Expression	Sed0014141
Synteny	Sed0014141

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGCGATACAGACAGATTATATAAAGCCGTATCGCATATTTACTGTTCTACCAAATTTCAATTTCAAAAGCCCTAACTTTCACAGTCGTCTCTCGCCTCAATCGACAGATCGAATTCGAGGTAACCTTCAATCCGACGCTGAATCTTCATCCATTAATTTGAATACGCAGTGTTCTTCGAGTTTAATCTTATTCCAGGTTTAGATTTGCTAGTTTCTGGTTTCGTCTTCTCCGTTTCTCGTCATGTATAATCGCTAATGTTGTTCGTTTCGGCGTTTCATGTTTTTAGGGAAAAATGAGTGGCCGTGCCAGCAGAACGATCTATGTTGGAAATCTCCCGGGTGACATTCGGGAAAAGGAAGTGGATGATTTGTTTTACAAGGTAATTCTTCGGAATTTTAGGTGAATAAGAGTTTTTTAGTGAATTTGTTTAGAGAATTTTATTCTGGGGGAGGGCATAAACCATGTCATAATCTATCATTTTGAGTTTAAGGGTTGGGTTATATTTTCATTGGGTTGTGATTTTGTAGTTTTTGTTGGGCGAAATTTTTTGGCTTGTTCAACCTAACCAATATTGTATATGTGTGTAAGATTAATTAATAAGATAGGTTTTTAGCATATTTGTAAGAATTAGGGAATATGCTCCAATAAGATATGTAATCTAGGTTTAAGTATAATATGATGCATTTTTTTCTTTCTTTATTTTTTACATGCTTATAGGATATGAATTGAATCTTGGCGAGAAAATAGGTTTGGGTTGGGTTGCTCTAATACATAAGTAGAGTTGGGTTGCTCTAATACATAAGTTGAGTTGGGTTGCTCCTAATACATAGGGTTGAGTTGGGTTACTCTAATAAATAGGGTTGAGTTGGGTTACTCTAGTACATGGGGTTTGGTTGGGTTGCTCTAATAGATAGATTTGGACGAGTTGGTGAATAGACCAACTCGAAAATTTTGGTTGGTCCAAAAAAATTTTCTAGCCCAACCCAATCTAGACCATGTACACCCTTACCCATTTATTTAAGAGTGAATTTCCCACCATTGTTCTATGAGATAGTCCATGTGCTCACAAGCTGACAACATTGTAAAAAAAAAACTGTCAGTTTTGTGCTGCAATGTATGTTTGTTCGATTTTCTTCTTCGTTGGATTGGATATTGTGCTGTTACTCATACAATGGTTGCAAACGTGATATTGGAGTAAGGGTGTGTGGAGCTTACTAATGTGGGAGTAATTCCTGCCTTTCAAGTTATAGACCCATGCTATGTGTTTTTTTGCTTAAAGATTCATGATGATCTGTAACAACGTTCTATTGAGTTTGGAGTCTTATTTGTTCAAAATATTTTATGTAATCCTTTTCTCATTCGTGATTTTTGTTGTAGTATGGACGCATAGCCCATATTGAACTCAAGGTTCCACCAAGACCTCCTGGTTATGCATTTGTTGAGGTGAGCTGCACATGATATGATATATTCACTTCCCTTCAACTTTTTTTTTTATAATCTTCTCAATATGAACTTAATGAATGCAGTTTGAAGATTCGGAAGATGCTGAAGATGCAATTCGTGGTCGCGATGGCTATGACTTTGATGGTCATAGGCTGCGTGTGAGACTTTCTATCTCAAGTGTTACAACAATTGGCCATCTTTCACTTAATTGTTTTACGTTTGTAATTTATGCATTTGTTTGTTTCTGTCTGTTCCTAGGTGGAGCTGGCTCATGGTGGTCGTGGTCATTCATCATCTAGTGATCGTTATAGTAGCCAAGGAGGCAGCCGTGGTGCCCGTGGAGTATCTCGGCGGACTGATTTTCGTGGTATTTACCTATTTATTTGGCACCATACGATATATTGACATTGTAAACATTAGATTTTGTAATATATGTTCTTTTGTTTTTGCAGTATTAGTCTCAGGATTACCTTCTTCTGCTTCATGGCAAGACTTAAAAGTAAGCATCTATGACTCAACGCCGTTCTATTTTAGCACAGTGTATGTGCAGTGACACTGCTATTTTTCTGATTGACACTGAATTCCATATTATTTAATATTGAAGGATCACATGCGACGTGCTGGGGATGTTTGCTTCGCCCAAGTGTTCCGTGATGGCAGTGGTGAGATAATTTCTGATGAAGTAGATTCAAATTCACTATAATGTGATTTTGAAAACAATTTCTTTCAATGTGTTGTAGGAACCACAGGGATTGTGGATTACACCAACTCTGATGACATGAAATATGCAGTAAGTAGTTATCTTTGTTTGAAATGTTGAGCCTTAGGCCCTTAGTTATCAACTGGCATGTTGTATTGTTGCTGTGACTTTGAGAGGTTCTTTTGGTGATATGCTATAATATTTGTGTCTTGTTATTGCAGATAAAAAAACTTGATGACTCTGAGTTCCGCAATGCATTTTCTCGGTCATATGTTCGTGTATGAGCTATACCTTCATGTTTTATTAGCTAACTGGTTTACCATTATCTTTTTGTACCTCACGTGTTTTAATTTTGTTTTTGGTAGGTGAGAGAATATGATTCTAAGAGGGATCTCTCCAGGAGTCCAAGTCGTGGGCGATCACGCTCTAGAGGGAGGAGTTATAGTCGCAGTCGTAGTAGGAGCAAGAGCCGCAGTAGGAGGTTGATTTTTATGAGCATTAAAATAGTAGTACCTCATTTCAGTCTTGTATTTAACATATTATTAACTTTTGGCCAGCAAGTCTCCAAAAGCTAAATCTTCCCGGCGGTCACCTGTCAAATCTCGATCAAGGTCTGCTTCTCCTGCTCGCTCTCGGTCAAAGTCATCGTCTCTTTCAGGGTATGTATTCTCATTTTGTAGACTATTATCTTTCCTTCTTGTGATCCTAAGTTATATCTTATTCATTTCCCCCCTTTTGAATAAAATCTAACCGCAGTCTCCTCTCATTGTATATTATATCCATATTTATATGATTTGAGTTTGTTGTCATGTCACTCAACAAGGTCTGTTTGTTGCACCTGTCTATCATTGGGAATAATGTTAGACCAGGTGTAATAAACACAATTAAAGTATCGAAAGTGAAATCATTCTTATATGTTGCTCAAGCACGGGTCAGCAAGTGGTTATACATTTAGCAACGGATTTAAAATTACATTCTTAAAATGGTGGAGTTGAATACTGTATAACTTCAAACTAATCTGGGCAATGTTTGGTATCCGCCATTGAAATGTTGGCTAAACTAACTCAATTTAGTTATTTCTATTTTACATCTTATTATGCTTTCTTTTTGGTTAATCATCGCCACGACCTTTCCCTTTATTAATTAGGAAAGTTTTTGTCCTCAAGGGGTGACATAGTAGTTGAAAACTTGGACTTTGAAGGTGTGCTCCCCTCAAAGTCTTAGGTTTGAGATTCACTTGTGACATATATTTGTAGACACCACCTGTGTCTCCATTCTTTCAATGTCTCTCGGTGTCTGACTTAAGGATGGGCCGGGCATGGTTACTCCCTATAGTGAAGTGAAGCTCCGATTTCCCGGTTTTCAAAAAAAAAATATTATGAATGTTTTTGTTCAACAACTGGGATAGCTAAGAAATGAATAGATTGCTTTCGTTTCTTGTCCTTTTTGTATGTGAAATTACTCATGTTTTTTAGATAAATCCTGCGGCATACTGGGGATTGGATTGGAATTTAGGATCTTGATGGGATTTGGTTCAATTGCGTTCAATGCTTTTGGTCGAGAAGGTATGCTGTTTTTTAGATGGGCAGCTTTGAAAACCTTCTGGTACTTGTGTTCTAATGCTTTTAGCAATGCAATGTCCATGGGTGCTAGATTTGGATCAAAGGAGATCATGGATTGCAATAATAGAGCTGGATTTCTTGAACTAAGTGCTATTTGGGCATGGAAGTCACTTTCACTTACATTTTCTGCTGCAAGATTTGCCAAAAAGCTATAGGATGCATTATCTGGATTCATTGTGGACTTTTTTGAGGCACATTAGGGAAGAATACTCATCTCCCGTCCACTGGTGTCTATACTATAGGTTCCTGTAGATTCAAGTTTTTTAATTTTAGGTCTTCACTTTGGAGTCTTGAGTTTTTCAATTTCCATATCATCTTCATAGTTGAACTGTTAAAATACTATTTTCCTTTCTCCACTTATACATTGTGGATGAGAGGCGTCAGGCTCGTTGATCAAAAGAAACGTGGATTTTAAATTTGAGTTGTTTCTGGACATTTTGCAGATCACGATCAAGATCCAGGTCCCCGGTGCCCAATGTAAGTGATCCTTCTTTTTTTTCTTAATTTTAGTTATTTATTTTTTATATGTGATTGTCCGAGTCATTTTGCGTGCATCTCGACTAATGTCAAGAGACATATTGCCTGACTCTAGCATATTTGAATGTCAAGAAAATCTATAGAAATTTAATTCCTAGGTAGGCGATCAACATAGATAGAACCCAATAACTCTTAGCTTCTCAAGACTGTCTTAAGCACTAGGTCACTCCACGATGGTTCCAATGTAATTGTTGATTATTTGTTAGCTTTGGCCAAACAAGTTCCTACTAATCATGTATCTCCTTTGATATATCATGTGTTTATCTCCATTCTTCATATAACCATGGTTTTAATGGCAGCGTGAGAAACGTGCTAGCAAAAGTCCTAAGAGGCGTGATGCTAGCAAAAGCCCTAAGAGGCGCGATGCTAGCAAAAGCCCTAAGAGGCGCGATGCTAGCAAAAGCCCCAGCAGAAGCAGAAGTCGGAGCCGAAGCATGAGCAAGAGCAAGAGTCCTACCCGGTAGAGCTTTTGGTAATTTCATTTTCAATTTCTGCAGTCAAGAATAGACTTTACTGCGACAGTTCATGTGGCATATTAGTAATCGTACCATCAAACATTTGTGATTCAATTCCTATGTTCTGACCACGAGTCTGTTCGAACAGATGAAGATGTTGCCGACCGGTCGATTTCCATAAGCGTGGTGGAGCGGAGTTGGAATCAGAGGATTGATCTGTGAAGTAGACTTCATTAGACTTGATAGTAACTATGTTTTTTTTTTTATAACGCTTAACTATGTTTTTGTTTGGACTCATGATGTGTGTGTAATTCGTATAGGATGTTTCTCAGGTGAGAGATGTTTAAAACGTTCCCAAAATTCACCATTCTAGTTTAAAATATTTTGTGACTGTTTAACAAGTTGGTGCATTCCACAGGCCACAAGGGGGGTTCACAAGCTTCAAAACTCAGTGCCACTCGTGCAAAATATGCACATAAGGGACAG

mRNA sequence

CGCGATACAGACAGATTATATAAAGCCGTATCGCATATTTACTGTTCTACCAAATTTCAATTTCAAAAGCCCTAACTTTCACAGTCGTCTCTCGCCTCAATCGACAGATCGAATTCGAGGGAAAAATGAGTGGCCGTGCCAGCAGAACGATCTATGTTGGAAATCTCCCGGGTGACATTCGGGAAAAGGAAGTGGATGATTTGTTTTACAAGTATGGACGCATAGCCCATATTGAACTCAAGGTTCCACCAAGACCTCCTGGTTATGCATTTGTTGAGTTTGAAGATTCGGAAGATGCTGAAGATGCAATTCGTGGTCGCGATGGCTATGACTTTGATGGTCATAGGCTGCGTGTGGAGCTGGCTCATGGTGGTCGTGGTCATTCATCATCTAGTGATCGTTATAGTAGCCAAGGAGGCAGCCGTGGTGCCCGTGGAGTATCTCGGCGGACTGATTTTCGTGTATTAGTCTCAGGATTACCTTCTTCTGCTTCATGGCAAGACTTAAAAGATCACATGCGACGTGCTGGGGATGTTTGCTTCGCCCAAGTGTTCCGTGATGGCAGTGGAACCACAGGGATTGTGGATTACACCAACTCTGATGACATGAAATATGCAATAAAAAAACTTGATGACTCTGAGTTCCGCAATGCATTTTCTCGGTCATATGTTCGTGTGAGAGAATATGATTCTAAGAGGGATCTCTCCAGGAGTCCAAGTCGTGGGCGATCACGCTCTAGAGGGAGGAGTTATAGTCGCAGTCGTAGTAGGAGCAAGAGCCGCAGTAGGAGCAAGTCTCCAAAAGCTAAATCTTCCCGGCGGTCACCTGTCAAATCTCGATCAAGGTCTGCTTCTCCTGCTCGCTCTCGGTCAAAGTCATCGTCTCTTTCAGGATAAATCCTGCGGCATACTGGGGATTGGATTGGAATTTAGGATCTTGATGGGATTTGGTTCAATTGCGTTCAATGCTTTTGGTCGAGAAGGTATGCTGTTTTTTAGATGGGCAGCTTTGAAAACCTTCTGGTACTTGTGTTCTAATGCTTTTAGCAATGCAATGTCCATGGGTGCTAGATTTGGATCAAAGGAGATCATGGATTGCAATAATAGAGCTGGATTTCTTGAACTAAGTGCTATTTGGGCATGGAAGTCACTTTCACTTACATTTTCTGCTGCAAGATTTGCCAAAAAGCTATAGGATGCATTATCTGGATTCATTGTGGACTTTTTTGAGGCACATTAGGGAAGAATACTCATCTCCCGTCCACTGGTGTCTATACTATAGGTTCCTGTAGATTCAAGTTTTTTAATTTTAGGTCTTCACTTTGGAGTCTTGAGTTTTTCAATTTCCATATCATCTTCATAGTTGAACTGTTAAAATACTATTTTCCTTTCTCCACTTATACATTGTGGATGAGAGGCGTCAGGCTCGTTGATCAAAAGAAACGTGGATTTTAAATTTGAGTTGTTTCTGGACATTTTGCAGATCACGATCAAGATCCAGGTCCCCGGTGCCCAATCGTGAGAAACGTGCTAGCAAAAGTCCTAAGAGGCGTGATGCTAGCAAAAGCCCTAAGAGGCGCGATGCTAGCAAAAGCCCTAAGAGGCGCGATGCTAGCAAAAGCCCCAGCAGAAGCAGAAGTCGGAGCCGAAGCATGAGCAAGAGCAAGAGTCCTACCCGGTAGAGCTTTTGATGAAGATGTTGCCGACCGGTCGATTTCCATAAGCGTGGTGGAGCGGAGTTGGAATCAGAGGATTGATCTGTGAAGTAGACTTCATTAGACTTGATAGTAACTATGTTTTTTTTTTTATAACGCTTAACTATGTTTTTGTTTGGACTCATGATGTGTGTGTAATTCGTATAGGATGTTTCTCAGGTGAGAGATGTTTAAAACGTTCCCAAAATTCACCATTCTAGTTTAAAATATTTTGTGACTGTTTAACAAGTTGGTGCATTCCACAGGCCACAAGGGGGGTTCACAAGCTTCAAAACTCAGTGCCACTCGTGCAAAATATGCACATAAGGGACAG

Coding sequence (CDS)

ATGAGTGGCCGTGCCAGCAGAACGATCTATGTTGGAAATCTCCCGGGTGACATTCGGGAAAAGGAAGTGGATGATTTGTTTTACAAGTATGGACGCATAGCCCATATTGAACTCAAGGTTCCACCAAGACCTCCTGGTTATGCATTTGTTGAGTTTGAAGATTCGGAAGATGCTGAAGATGCAATTCGTGGTCGCGATGGCTATGACTTTGATGGTCATAGGCTGCGTGTGGAGCTGGCTCATGGTGGTCGTGGTCATTCATCATCTAGTGATCGTTATAGTAGCCAAGGAGGCAGCCGTGGTGCCCGTGGAGTATCTCGGCGGACTGATTTTCGTGTATTAGTCTCAGGATTACCTTCTTCTGCTTCATGGCAAGACTTAAAAGATCACATGCGACGTGCTGGGGATGTTTGCTTCGCCCAAGTGTTCCGTGATGGCAGTGGAACCACAGGGATTGTGGATTACACCAACTCTGATGACATGAAATATGCAATAAAAAAACTTGATGACTCTGAGTTCCGCAATGCATTTTCTCGGTCATATGTTCGTGTGAGAGAATATGATTCTAAGAGGGATCTCTCCAGGAGTCCAAGTCGTGGGCGATCACGCTCTAGAGGGAGGAGTTATAGTCGCAGTCGTAGTAGGAGCAAGAGCCGCAGTAGGAGCAAGTCTCCAAAAGCTAAATCTTCCCGGCGGTCACCTGTCAAATCTCGATCAAGGTCTGCTTCTCCTGCTCGCTCTCGGTCAAAGTCATCGTCTCTTTCAGGATAA

Protein sequence

MSGRASRTIYVGNLPGDIREKEVDDLFYKYGRIAHIELKVPPRPPGYAFVEFEDSEDAEDAIRGRDGYDFDGHRLRVELAHGGRGHSSSSDRYSSQGGSRGARGVSRRTDFRVLVSGLPSSASWQDLKDHMRRAGDVCFAQVFRDGSGTTGIVDYTNSDDMKYAIKKLDDSEFRNAFSRSYVRVREYDSKRDLSRSPSRGRSRSRGRSYSRSRSRSKSRSRSKSPKAKSSRRSPVKSRSRSASPARSRSKSSSLSG

Homology

[Close]

BLAST of Sed0014141 vs. NCBI nr
Match: XP_022148221.1 (serine/arginine-rich-splicing factor SR34-like isoform X3 [Momordica charantia])

HSP 1 Score: 447.6 bits (1150), Expect = 7.3e-122
Identity = 241/260 (92.69%), Postives = 251/260 (96.54%), Query Frame = 0


Query: 1   MSGRASRTIYVGNLPGDIREKEVDDLFYKYGRIAHIELKVPPRPPGYAFVEFEDSEDAED 60
           MS RASRT+YVGNLPGDIREKEV+DLFYKYGRIAHI+LKVPPRPPGYAFVEFED+EDA+D
Sbjct: 1   MSSRASRTVYVGNLPGDIREKEVEDLFYKYGRIAHIDLKVPPRPPGYAFVEFEDAEDAQD 60

Query: 61  AIRGRDGYDFDGHRLRVELAHGGRGHSSSSDRYSSQGGSRGARGVSRRTDFRVLVSGLPS 120
           AIRGRDGYDFDGHRLRVELAHGGRGHSSSSDRYSS GGSRG RGVSRR+D+RVLV+GLPS
Sbjct: 61  AIRGRDGYDFDGHRLRVELAHGGRGHSSSSDRYSSHGGSRGGRGVSRRSDYRVLVTGLPS 120

Query: 121 SASWQDLKDHMRRAGDVCFAQVFRDGSGTTGIVDYTNSDDMKYAIKKLDDSEFRNAFSRS 180
           SASWQDLKDHMRRAGDVCF+QVFRDGSGTTGIVDYTN DDMKYAIKKLDDSEFRNAFSRS
Sbjct: 121 SASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKYAIKKLDDSEFRNAFSRS 180

Query: 181 YVRVREYDSKRDLSRSPSRGRSRSRGRSYSRS----RSRSKSRSRSKSPKAKSSRRSPVK 240
           YVRVREYDSKRDLSRSPSRGRS SRGRSYSRS    RSRSKSRSRSKSPKAKSS+RSPVK
Sbjct: 181 YVRVREYDSKRDLSRSPSRGRSHSRGRSYSRSRSRGRSRSKSRSRSKSPKAKSSQRSPVK 240

Query: 241 SRSRSASPARSRSKSSSLSG 257
           SRSRSASPARSRSKSSSLSG
Sbjct: 241 SRSRSASPARSRSKSSSLSG 260

[Close]

BLAST of Sed0014141 vs. NCBI nr
Match: XP_022148198.1 (serine/arginine-rich-splicing factor SR34-like isoform X1 [Momordica charantia])

HSP 1 Score: 447.6 bits (1150), Expect = 7.3e-122
Identity = 241/260 (92.69%), Postives = 251/260 (96.54%), Query Frame = 0


Query: 1   MSGRASRTIYVGNLPGDIREKEVDDLFYKYGRIAHIELKVPPRPPGYAFVEFEDSEDAED 60
           MS RASRT+YVGNLPGDIREKEV+DLFYKYGRIAHI+LKVPPRPPGYAFVEFED+EDA+D
Sbjct: 1   MSSRASRTVYVGNLPGDIREKEVEDLFYKYGRIAHIDLKVPPRPPGYAFVEFEDAEDAQD 60

Query: 61  AIRGRDGYDFDGHRLRVELAHGGRGHSSSSDRYSSQGGSRGARGVSRRTDFRVLVSGLPS 120
           AIRGRDGYDFDGHRLRVELAHGGRGHSSSSDRYSS GGSRG RGVSRR+D+RVLV+GLPS
Sbjct: 61  AIRGRDGYDFDGHRLRVELAHGGRGHSSSSDRYSSHGGSRGGRGVSRRSDYRVLVTGLPS 120

Query: 121 SASWQDLKDHMRRAGDVCFAQVFRDGSGTTGIVDYTNSDDMKYAIKKLDDSEFRNAFSRS 180
           SASWQDLKDHMRRAGDVCF+QVFRDGSGTTGIVDYTN DDMKYAIKKLDDSEFRNAFSRS
Sbjct: 121 SASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKYAIKKLDDSEFRNAFSRS 180

Query: 181 YVRVREYDSKRDLSRSPSRGRSRSRGRSYSRS----RSRSKSRSRSKSPKAKSSRRSPVK 240
           YVRVREYDSKRDLSRSPSRGRS SRGRSYSRS    RSRSKSRSRSKSPKAKSS+RSPVK
Sbjct: 181 YVRVREYDSKRDLSRSPSRGRSHSRGRSYSRSRSRGRSRSKSRSRSKSPKAKSSQRSPVK 240

Query: 241 SRSRSASPARSRSKSSSLSG 257
           SRSRSASPARSRSKSSSLSG
Sbjct: 241 SRSRSASPARSRSKSSSLSG 260

[Close]

BLAST of Sed0014141 vs. NCBI nr
Match: XP_008451568.1 (PREDICTED: serine/arginine-rich-splicing factor SR34-like isoform X1 [Cucumis melo])

HSP 1 Score: 443.7 bits (1140), Expect = 1.1e-120
Identity = 239/260 (91.92%), Postives = 250/260 (96.15%), Query Frame = 0


Query: 1   MSGRASRTIYVGNLPGDIREKEVDDLFYKYGRIAHIELKVPPRPPGYAFVEFEDSEDAED 60
           MS RASRT+YVGNLPGDIREKEV+DLFYKYGRIAHI+LKVPPRPPGYAFVEFED+EDA+D
Sbjct: 1   MSSRASRTVYVGNLPGDIREKEVEDLFYKYGRIAHIDLKVPPRPPGYAFVEFEDAEDAQD 60

Query: 61  AIRGRDGYDFDGHRLRVELAHGGRGHSSSSDRYSSQGGSRGARGVSRRTDFRVLVSGLPS 120
           AIRGRDGYDFDGHRLRVELAHGGRGHSSSSDRYSS GGSRG RGVSRR+D+RVLV+GLPS
Sbjct: 61  AIRGRDGYDFDGHRLRVELAHGGRGHSSSSDRYSSHGGSRGGRGVSRRSDYRVLVTGLPS 120

Query: 121 SASWQDLKDHMRRAGDVCFAQVFRDGSGTTGIVDYTNSDDMKYAIKKLDDSEFRNAFSRS 180
           SASWQDLKDHMRRAGDVCF+QVFRDGSGTTGIVDYTN DDMKYAIKKLDDSEFRNAFSR+
Sbjct: 121 SASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKYAIKKLDDSEFRNAFSRA 180

Query: 181 YVRVREYDSKRDLSRSPSRGRSRSRGRSYSRS----RSRSKSRSRSKSPKAKSSRRSPVK 240
           YVRVREYDSKRDLSRSPSRGRS SRGRSYSRS    RSRSKS SRSKSPKAKSS+RSPVK
Sbjct: 181 YVRVREYDSKRDLSRSPSRGRSYSRGRSYSRSRSRGRSRSKSHSRSKSPKAKSSQRSPVK 240

Query: 241 SRSRSASPARSRSKSSSLSG 257
           SRSRSASPARSRSKSSSLSG
Sbjct: 241 SRSRSASPARSRSKSSSLSG 260

[Close]

BLAST of Sed0014141 vs. NCBI nr
Match: KAA0067995.1 (serine/arginine-rich-splicing factor SR34-like isoform X1 [Cucumis melo var. makuwa] >TYK18132.1 serine/arginine-rich-splicing factor SR34-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 443.7 bits (1140), Expect = 1.1e-120
Identity = 239/260 (91.92%), Postives = 250/260 (96.15%), Query Frame = 0


Query: 1   MSGRASRTIYVGNLPGDIREKEVDDLFYKYGRIAHIELKVPPRPPGYAFVEFEDSEDAED 60
           MS RASRT+YVGNLPGDIREKEV+DLFYKYGRIAHI+LKVPPRPPGYAFVEFED+EDA+D
Sbjct: 1   MSSRASRTVYVGNLPGDIREKEVEDLFYKYGRIAHIDLKVPPRPPGYAFVEFEDAEDAQD 60

Query: 61  AIRGRDGYDFDGHRLRVELAHGGRGHSSSSDRYSSQGGSRGARGVSRRTDFRVLVSGLPS 120
           AIRGRDGYDFDGHRLRVELAHGGRGHSSSSDRYSS GGSRG RGVSRR+D+RVLV+GLPS
Sbjct: 61  AIRGRDGYDFDGHRLRVELAHGGRGHSSSSDRYSSHGGSRGGRGVSRRSDYRVLVTGLPS 120

Query: 121 SASWQDLKDHMRRAGDVCFAQVFRDGSGTTGIVDYTNSDDMKYAIKKLDDSEFRNAFSRS 180
           SASWQDLKDHMRRAGDVCF+QVFRDGSGTTGIVDYTN DDMKYAIKKLDDSEFRNAFSR+
Sbjct: 121 SASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKYAIKKLDDSEFRNAFSRA 180

Query: 181 YVRVREYDSKRDLSRSPSRGRSRSRGRSYSRS----RSRSKSRSRSKSPKAKSSRRSPVK 240
           YVRVREYDSKRDLSRSPSRGRS SRGRSYSRS    RSRSKS SRSKSPKAKSS+RSPVK
Sbjct: 181 YVRVREYDSKRDLSRSPSRGRSYSRGRSYSRSRSRGRSRSKSHSRSKSPKAKSSQRSPVK 240

Query: 241 SRSRSASPARSRSKSSSLSG 257
           SRSRSASPARSRSKSSSLSG
Sbjct: 241 SRSRSASPARSRSKSSSLSG 260

[Close]

BLAST of Sed0014141 vs. NCBI nr
Match: XP_038898762.1 (serine/arginine-rich-splicing factor SR34-like isoform X1 [Benincasa hispida])

HSP 1 Score: 443.7 bits (1140), Expect = 1.1e-120
Identity = 239/260 (91.92%), Postives = 250/260 (96.15%), Query Frame = 0


Query: 1   MSGRASRTIYVGNLPGDIREKEVDDLFYKYGRIAHIELKVPPRPPGYAFVEFEDSEDAED 60
           MS RASRT+YVGNLPGDIREKEV+DLFYKYGRIAHI+LKVPPRPPGYAFVEFED+EDA+D
Sbjct: 1   MSSRASRTVYVGNLPGDIREKEVEDLFYKYGRIAHIDLKVPPRPPGYAFVEFEDAEDAQD 60

Query: 61  AIRGRDGYDFDGHRLRVELAHGGRGHSSSSDRYSSQGGSRGARGVSRRTDFRVLVSGLPS 120
           AIRGRDGYDFDGHRLRVELAHGGRGHSSSSDRYSS GGSRG RGVSRR+D+RVLV+GLPS
Sbjct: 61  AIRGRDGYDFDGHRLRVELAHGGRGHSSSSDRYSSHGGSRGGRGVSRRSDYRVLVTGLPS 120

Query: 121 SASWQDLKDHMRRAGDVCFAQVFRDGSGTTGIVDYTNSDDMKYAIKKLDDSEFRNAFSRS 180
           SASWQDLKDHMRRAGDVCF+QVFRDGSGTTGIVDYTN DDMKYAIKKLDDSEFRNAFSR+
Sbjct: 121 SASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKYAIKKLDDSEFRNAFSRA 180

Query: 181 YVRVREYDSKRDLSRSPSRGRSRSRGRSYSRS----RSRSKSRSRSKSPKAKSSRRSPVK 240
           YVRVREYDSKRDLSRSPSRGRS SRGRSYSRS    RSRSKS SRSKSPKAKSS+RSPVK
Sbjct: 181 YVRVREYDSKRDLSRSPSRGRSYSRGRSYSRSRSRGRSRSKSHSRSKSPKAKSSQRSPVK 240

Query: 241 SRSRSASPARSRSKSSSLSG 257
           SRSRSASPARSRSKSSSLSG
Sbjct: 241 SRSRSASPARSRSKSSSLSG 260

[Close]

BLAST of Sed0014141 vs. ExPASy Swiss-Prot
Match: O22315 (Serine/arginine-rich-splicing factor SR34 OS=Arabidopsis thaliana OX=3702 GN=SR34 PE=1 SV=1)

HSP 1 Score: 339.0 bits (868), Expect = 4.8e-92
Identity = 195/275 (70.91%), Postives = 221/275 (80.36%), Query Frame = 0


Query: 1   MSGRASRTIYVGNLPGDIREKEVDDLFYKYGRIAHIELKVPPRPPGYAFVEFEDSEDAED 60
           MS R+SRT+YVGNLPGDIRE+EV+DLF KYG +  I+LKVPPRPPGYAFVEF+D+ DAED
Sbjct: 1   MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60

Query: 61  AIRGRDGYDFDGHRLRVELAHGGRGHSSSSDRYSSQGGSR---------GARGVSRRTDF 120
           AI GRDGYDFDGHRLRVELAHGGR  SS   R S  GG R         G+RG SRR++F
Sbjct: 61  AIHGRDGYDFDGHRLRVELAHGGR-RSSDDTRGSFNGGGRGGGRGRGDGGSRGPSRRSEF 120

Query: 121 RVLVSGLPSSASWQDLKDHMRRAGDVCFAQVFRDGSGTTGIVDYTNSDDMKYAIKKLDDS 180
           RVLV+GLPSSASWQDLKDHMR+ GDVCF+QV+RD  GTTG+VDYT  +DMKYA+KKLDD+
Sbjct: 121 RVLVTGLPSSASWQDLKDHMRKGGDVCFSQVYRDARGTTGVVDYTCYEDMKYALKKLDDT 180

Query: 181 EFRNAFSRSYVRVREYDSKRDLSRSPSRGRSRSRGRSYSR----SRSRSKSRSRSKSPKA 240
           EFRNAFS  YVRVREYDS++D SRSPSRGRS S+ RS SR    SRSRS+SRSRS+SPKA
Sbjct: 181 EFRNAFSNGYVRVREYDSRKD-SRSPSRGRSYSKSRSRSRGRSVSRSRSRSRSRSRSPKA 240

Query: 241 KSSRRSPVK---------SRSRSASPARSRSKSSS 254
           KSSRRSP K         S+SRS SP RSRS+S S
Sbjct: 241 KSSRRSPAKSTSRSPGPRSKSRSPSPRRSRSRSRS 273

[Close]

BLAST of Sed0014141 vs. ExPASy Swiss-Prot
Match: F4JHI7 (Serine/arginine-rich splicing factor SR34B OS=Arabidopsis thaliana OX=3702 GN=SR34B PE=2 SV=1)

HSP 1 Score: 329.7 bits (844), Expect = 2.9e-89
Identity = 195/268 (72.76%), Postives = 220/268 (82.09%), Query Frame = 0


Query: 1   MSGRASRTIYVGNLPGDIREKEVDDLFYKYGRIAHIELKVPPRPPGYAFVEFEDSEDAED 60
           MS R+SRTIYVGNLPGDIRE+EV+DLF KYG +  I+LK+PPRPPGYAFVEFED+ DA+D
Sbjct: 1   MSSRSSRTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADD 60

Query: 61  AIRGRDGYDFDGHRLRVELAHGGRGHS-SSSDRYSSQG-GSRGA-------RGVSRRTDF 120
           AI GRDGYDFDGH LRVELAHGGR  S  +   YS +G G RG        RG SRR+++
Sbjct: 61  AIYGRDGYDFDGHHLRVELAHGGRRSSHDARGSYSGRGRGGRGGGDGGGRERGPSRRSEY 120

Query: 121 RVLVSGLPSSASWQDLKDHMRRAGDVCFAQVFRDGSGTTGIVDYTNSDDMKYAIKKLDDS 180
           RV+VSGLPSSASWQDLKDHMR+ G+VCF+QVFRDG GTTGIVDYT+ +DMKYA   LDD+
Sbjct: 121 RVVVSGLPSSASWQDLKDHMRKGGEVCFSQVFRDGRGTTGIVDYTSYEDMKYA---LDDT 180

Query: 181 EFRNAFSRSYVRVREYDSKRDLSRSPSRGR----SRSRGRSYSRSRSRSKSRSRSKSPKA 240
           EFRNAFS  YVRVREYDS+RD SRSPSRGR    SRSRGRS SRSRSRS+SRS+S+SPKA
Sbjct: 181 EFRNAFSHEYVRVREYDSRRD-SRSPSRGRSYSKSRSRGRSPSRSRSRSRSRSKSRSPKA 240

Query: 241 KSSRRSPVKSRSRSASPARSRSKSSSLS 256
           KS RRSP KS SRS   +RSRSKS SLS
Sbjct: 241 KSLRRSPAKSTSRSPR-SRSRSKSRSLS 263

[Close]

BLAST of Sed0014141 vs. ExPASy Swiss-Prot
Match: A2RVS6 (Serine/arginine-rich splicing factor SR34A OS=Arabidopsis thaliana OX=3702 GN=SR34A PE=2 SV=1)

HSP 1 Score: 307.0 bits (785), Expect = 2.0e-82
Identity = 178/269 (66.17%), Postives = 207/269 (76.95%), Query Frame = 0


Query: 1   MSGRASRTIYVGNLPGDIREKEVDDLFYKYGRIAHIELKVPPRPPGYAFVEFEDSEDAED 60
           MSGR SR+IYVGNLPGDIRE E++D+FYKYGRI  IELKVPPRPP Y FVEFE S DAED
Sbjct: 1   MSGRFSRSIYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAED 60

Query: 61  AIRGRDGYDFDGHRLRVELAHGGRGHSSSSDR---------YSSQGGSRGAR--GVSRRT 120
           AI+GRDGY+ DG RLRVELAHGGRG SSS  R         Y   GG  G+   GVSR +
Sbjct: 61  AIKGRDGYNLDGCRLRVELAHGGRGQSSSDRRGGYGGGGSGYGGGGGGGGSARFGVSRHS 120

Query: 121 DFRVLVSGLPSSASWQDLKDHMRRAGDVCFAQVFRDGSGTTGIVDYTNSDDMKYAIKKLD 180
           +FRV+V GLPSSASWQDLKDHMR+AGDVCFA+V RD  GT G+VDYTN DDMKYAI+KLD
Sbjct: 121 EFRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVTRDSDGTYGVVDYTNYDDMKYAIRKLD 180

Query: 181 DSEFRNAFSRSYVRVREYDSKRDLSRSPSRGRSRSRGRSYSRSR----SRSKSRSRSKSP 240
           D+EFRN ++R ++RV++Y+S R  SRSPSR RSRSR RS SR R    SRS+S SRSKSP
Sbjct: 181 DTEFRNPWARGFIRVKKYESSRSRSRSPSRSRSRSRSRSRSRGRGRSHSRSRSLSRSKSP 240

Query: 241 K---AKSSRRSPVKSRSRSASPARSRSKS 252
           +   +KS RRS  +S S+S SP+  + KS
Sbjct: 241 RKDLSKSPRRSLSRSISKSRSPSPDKKKS 269

[Close]

BLAST of Sed0014141 vs. ExPASy Swiss-Prot
Match: Q9XFR5 (Serine/arginine-rich splicing factor SR30 OS=Arabidopsis thaliana OX=3702 GN=SR30 PE=1 SV=1)

HSP 1 Score: 288.9 bits (738), Expect = 5.7e-77
Identity = 173/263 (65.78%), Postives = 206/263 (78.33%), Query Frame = 0


Query: 1   MSGRASRTIYVGNLPGDIREKEVDDLFYKYGRIAHIELKVPPRPPGYAFVEFEDSEDAED 60
           MS R +RTIYVGNLPGDIR+ EV+DLFYKYG I  I+LK+PPRPPGYAFVEFED  DA+D
Sbjct: 1   MSSRWNRTIYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPRDADD 60

Query: 61  AIRGRDGYDFDGHRLRVELAHGGRGHSSSSDRYSSQGGSRGARGVSRRTDFRVLVSGLPS 120
           AI GRDGYDFDG RLRVE+AHGGR  S S DRYSS   +  +R  SRR+D+RVLV+GLP 
Sbjct: 61  AIYGRDGYDFDGCRLRVEIAHGGRRFSPSVDRYSSSYSA--SRAPSRRSDYRVLVTGLPP 120

Query: 121 SASWQDLKDHMRRAGDVCFAQVFRDGSGTTGIVDYTNSDDMKYAIKKLDDSEFRNAFSRS 180
           SASWQDLKDHMR+AGDVCF++VF D  G +G+VDY+N DDMKYAI+KLD +EFRNAFS +
Sbjct: 121 SASWQDLKDHMRKAGDVCFSEVFPDRKGMSGVVDYSNYDDMKYAIRKLDATEFRNAFSSA 180

Query: 181 YVRVREYDSKRDLSRSPS-----RGRSRSRGRSYS-RSRSRSKSRSRSKSPKAKSSRRS- 240
           Y+RVREY+S R +SRSP      R RSRSRG S S  S+SRS S +RS SP+++   RS 
Sbjct: 181 YIRVREYES-RSVSRSPDDSKSYRSRSRSRGPSCSYSSKSRSVSPARSISPRSRPLSRSR 240

Query: 241 ---PVKSRSRSASPARSRSKSSS 254
                 SRS+S S +RSRS+S+S
Sbjct: 241 SLYSSVSRSQSRSKSRSRSRSNS 260

[Close]

BLAST of Sed0014141 vs. ExPASy Swiss-Prot
Match: Q0VCY7 (Serine/arginine-rich splicing factor 1 OS=Bos taurus OX=9913 GN=SRSF1 PE=2 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 4.2e-56
Identity = 138/244 (56.56%), Postives = 166/244 (68.03%), Query Frame = 0


Query: 2   SGRASRTIYVGNLPGDIREKEVDDLFYKYGRIAHIELKVPPRPPGYAFVEFEDSEDAEDA 61
           +G     IYVGNLP DIR K+++D+FYKYG I  I+LK     P +AFVEFED  DAEDA
Sbjct: 11  AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDA 70

Query: 62  IRGRDGYDFDGHRLRVELAHGGRGHSSSSDRYSSQGGSRGARG-VSRRTDFRVLVSGLPS 121
           + GRDGYD+DG+RLRVE    GRG           G  RG  G  SRR++ RV+VSGLP 
Sbjct: 71  VYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPP 130

Query: 122 SASWQDLKDHMRRAGDVCFAQVFRDGSGTTGIVDYTNSDDMKYAIKKLDDSEFR-NAFSR 181
           S SWQDLKDHMR AGDVC+A V+RDG   TG+V++   +DM YA++KLD+++FR +    
Sbjct: 131 SGSWQDLKDHMREAGDVCYADVYRDG---TGVVEFVRKEDMTYAVRKLDNTKFRSHEGET 190

Query: 182 SYVRVREYDSKRDLSRSPSRGRSRSRGRSYSRSRSRSKSRSRSKSPKAK--SSRRSPVKS 241
           +Y+RV     K D  RSPS GRSRSR RS SRSRSRS SRSRS SP+    S R SP  S
Sbjct: 191 AYIRV-----KVDGPRSPSYGRSRSRSRSRSRSRSRSNSRSRSYSPRRSRGSPRYSPRHS 246

[Close]

BLAST of Sed0014141 vs. ExPASy TrEMBL
Match: A0A6J1D3F5 (serine/arginine-rich-splicing factor SR34-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111016926 PE=4 SV=1)

HSP 1 Score: 447.6 bits (1150), Expect = 3.5e-122
Identity = 241/260 (92.69%), Postives = 251/260 (96.54%), Query Frame = 0


Query: 1   MSGRASRTIYVGNLPGDIREKEVDDLFYKYGRIAHIELKVPPRPPGYAFVEFEDSEDAED 60
           MS RASRT+YVGNLPGDIREKEV+DLFYKYGRIAHI+LKVPPRPPGYAFVEFED+EDA+D
Sbjct: 1   MSSRASRTVYVGNLPGDIREKEVEDLFYKYGRIAHIDLKVPPRPPGYAFVEFEDAEDAQD 60

Query: 61  AIRGRDGYDFDGHRLRVELAHGGRGHSSSSDRYSSQGGSRGARGVSRRTDFRVLVSGLPS 120
           AIRGRDGYDFDGHRLRVELAHGGRGHSSSSDRYSS GGSRG RGVSRR+D+RVLV+GLPS
Sbjct: 61  AIRGRDGYDFDGHRLRVELAHGGRGHSSSSDRYSSHGGSRGGRGVSRRSDYRVLVTGLPS 120

Query: 121 SASWQDLKDHMRRAGDVCFAQVFRDGSGTTGIVDYTNSDDMKYAIKKLDDSEFRNAFSRS 180
           SASWQDLKDHMRRAGDVCF+QVFRDGSGTTGIVDYTN DDMKYAIKKLDDSEFRNAFSRS
Sbjct: 121 SASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKYAIKKLDDSEFRNAFSRS 180

Query: 181 YVRVREYDSKRDLSRSPSRGRSRSRGRSYSRS----RSRSKSRSRSKSPKAKSSRRSPVK 240
           YVRVREYDSKRDLSRSPSRGRS SRGRSYSRS    RSRSKSRSRSKSPKAKSS+RSPVK
Sbjct: 181 YVRVREYDSKRDLSRSPSRGRSHSRGRSYSRSRSRGRSRSKSRSRSKSPKAKSSQRSPVK 240

Query: 241 SRSRSASPARSRSKSSSLSG 257
           SRSRSASPARSRSKSSSLSG
Sbjct: 241 SRSRSASPARSRSKSSSLSG 260

[Close]

BLAST of Sed0014141 vs. ExPASy TrEMBL
Match: A0A6J1D4Q8 (serine/arginine-rich-splicing factor SR34-like isoform X3 OS=Momordica charantia OX=3673 GN=LOC111016926 PE=4 SV=1)

HSP 1 Score: 447.6 bits (1150), Expect = 3.5e-122
Identity = 241/260 (92.69%), Postives = 251/260 (96.54%), Query Frame = 0


Query: 1   MSGRASRTIYVGNLPGDIREKEVDDLFYKYGRIAHIELKVPPRPPGYAFVEFEDSEDAED 60
           MS RASRT+YVGNLPGDIREKEV+DLFYKYGRIAHI+LKVPPRPPGYAFVEFED+EDA+D
Sbjct: 1   MSSRASRTVYVGNLPGDIREKEVEDLFYKYGRIAHIDLKVPPRPPGYAFVEFEDAEDAQD 60

Query: 61  AIRGRDGYDFDGHRLRVELAHGGRGHSSSSDRYSSQGGSRGARGVSRRTDFRVLVSGLPS 120
           AIRGRDGYDFDGHRLRVELAHGGRGHSSSSDRYSS GGSRG RGVSRR+D+RVLV+GLPS
Sbjct: 61  AIRGRDGYDFDGHRLRVELAHGGRGHSSSSDRYSSHGGSRGGRGVSRRSDYRVLVTGLPS 120

Query: 121 SASWQDLKDHMRRAGDVCFAQVFRDGSGTTGIVDYTNSDDMKYAIKKLDDSEFRNAFSRS 180
           SASWQDLKDHMRRAGDVCF+QVFRDGSGTTGIVDYTN DDMKYAIKKLDDSEFRNAFSRS
Sbjct: 121 SASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKYAIKKLDDSEFRNAFSRS 180

Query: 181 YVRVREYDSKRDLSRSPSRGRSRSRGRSYSRS----RSRSKSRSRSKSPKAKSSRRSPVK 240
           YVRVREYDSKRDLSRSPSRGRS SRGRSYSRS    RSRSKSRSRSKSPKAKSS+RSPVK
Sbjct: 181 YVRVREYDSKRDLSRSPSRGRSHSRGRSYSRSRSRGRSRSKSRSRSKSPKAKSSQRSPVK 240

Query: 241 SRSRSASPARSRSKSSSLSG 257
           SRSRSASPARSRSKSSSLSG
Sbjct: 241 SRSRSASPARSRSKSSSLSG 260

[Close]

BLAST of Sed0014141 vs. ExPASy TrEMBL
Match: A0A1S4DYP1 (serine/arginine-rich-splicing factor SR34-like isoform X4 OS=Cucumis melo OX=3656 GN=LOC103492811 PE=4 SV=1)

HSP 1 Score: 443.7 bits (1140), Expect = 5.1e-121
Identity = 239/260 (91.92%), Postives = 250/260 (96.15%), Query Frame = 0


Query: 1   MSGRASRTIYVGNLPGDIREKEVDDLFYKYGRIAHIELKVPPRPPGYAFVEFEDSEDAED 60
           MS RASRT+YVGNLPGDIREKEV+DLFYKYGRIAHI+LKVPPRPPGYAFVEFED+EDA+D
Sbjct: 1   MSSRASRTVYVGNLPGDIREKEVEDLFYKYGRIAHIDLKVPPRPPGYAFVEFEDAEDAQD 60

Query: 61  AIRGRDGYDFDGHRLRVELAHGGRGHSSSSDRYSSQGGSRGARGVSRRTDFRVLVSGLPS 120
           AIRGRDGYDFDGHRLRVELAHGGRGHSSSSDRYSS GGSRG RGVSRR+D+RVLV+GLPS
Sbjct: 61  AIRGRDGYDFDGHRLRVELAHGGRGHSSSSDRYSSHGGSRGGRGVSRRSDYRVLVTGLPS 120

Query: 121 SASWQDLKDHMRRAGDVCFAQVFRDGSGTTGIVDYTNSDDMKYAIKKLDDSEFRNAFSRS 180
           SASWQDLKDHMRRAGDVCF+QVFRDGSGTTGIVDYTN DDMKYAIKKLDDSEFRNAFSR+
Sbjct: 121 SASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKYAIKKLDDSEFRNAFSRA 180

Query: 181 YVRVREYDSKRDLSRSPSRGRSRSRGRSYSRS----RSRSKSRSRSKSPKAKSSRRSPVK 240
           YVRVREYDSKRDLSRSPSRGRS SRGRSYSRS    RSRSKS SRSKSPKAKSS+RSPVK
Sbjct: 181 YVRVREYDSKRDLSRSPSRGRSYSRGRSYSRSRSRGRSRSKSHSRSKSPKAKSSQRSPVK 240

Query: 241 SRSRSASPARSRSKSSSLSG 257
           SRSRSASPARSRSKSSSLSG
Sbjct: 241 SRSRSASPARSRSKSSSLSG 260

[Close]

BLAST of Sed0014141 vs. ExPASy TrEMBL
Match: A0A5D3D2K1 (Serine/arginine-rich-splicing factor SR34-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G00620 PE=4 SV=1)

HSP 1 Score: 443.7 bits (1140), Expect = 5.1e-121
Identity = 239/260 (91.92%), Postives = 250/260 (96.15%), Query Frame = 0


Query: 1   MSGRASRTIYVGNLPGDIREKEVDDLFYKYGRIAHIELKVPPRPPGYAFVEFEDSEDAED 60
           MS RASRT+YVGNLPGDIREKEV+DLFYKYGRIAHI+LKVPPRPPGYAFVEFED+EDA+D
Sbjct: 1   MSSRASRTVYVGNLPGDIREKEVEDLFYKYGRIAHIDLKVPPRPPGYAFVEFEDAEDAQD 60

Query: 61  AIRGRDGYDFDGHRLRVELAHGGRGHSSSSDRYSSQGGSRGARGVSRRTDFRVLVSGLPS 120
           AIRGRDGYDFDGHRLRVELAHGGRGHSSSSDRYSS GGSRG RGVSRR+D+RVLV+GLPS
Sbjct: 61  AIRGRDGYDFDGHRLRVELAHGGRGHSSSSDRYSSHGGSRGGRGVSRRSDYRVLVTGLPS 120

Query: 121 SASWQDLKDHMRRAGDVCFAQVFRDGSGTTGIVDYTNSDDMKYAIKKLDDSEFRNAFSRS 180
           SASWQDLKDHMRRAGDVCF+QVFRDGSGTTGIVDYTN DDMKYAIKKLDDSEFRNAFSR+
Sbjct: 121 SASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKYAIKKLDDSEFRNAFSRA 180

Query: 181 YVRVREYDSKRDLSRSPSRGRSRSRGRSYSRS----RSRSKSRSRSKSPKAKSSRRSPVK 240
           YVRVREYDSKRDLSRSPSRGRS SRGRSYSRS    RSRSKS SRSKSPKAKSS+RSPVK
Sbjct: 181 YVRVREYDSKRDLSRSPSRGRSYSRGRSYSRSRSRGRSRSKSHSRSKSPKAKSSQRSPVK 240

Query: 241 SRSRSASPARSRSKSSSLSG 257
           SRSRSASPARSRSKSSSLSG
Sbjct: 241 SRSRSASPARSRSKSSSLSG 260

[Close]

BLAST of Sed0014141 vs. ExPASy TrEMBL
Match: A0A1S4DYM7 (serine/arginine-rich-splicing factor SR34-like isoform X3 OS=Cucumis melo OX=3656 GN=LOC103492811 PE=4 SV=1)

HSP 1 Score: 443.7 bits (1140), Expect = 5.1e-121
Identity = 239/260 (91.92%), Postives = 250/260 (96.15%), Query Frame = 0


Query: 1   MSGRASRTIYVGNLPGDIREKEVDDLFYKYGRIAHIELKVPPRPPGYAFVEFEDSEDAED 60
           MS RASRT+YVGNLPGDIREKEV+DLFYKYGRIAHI+LKVPPRPPGYAFVEFED+EDA+D
Sbjct: 1   MSSRASRTVYVGNLPGDIREKEVEDLFYKYGRIAHIDLKVPPRPPGYAFVEFEDAEDAQD 60

Query: 61  AIRGRDGYDFDGHRLRVELAHGGRGHSSSSDRYSSQGGSRGARGVSRRTDFRVLVSGLPS 120
           AIRGRDGYDFDGHRLRVELAHGGRGHSSSSDRYSS GGSRG RGVSRR+D+RVLV+GLPS
Sbjct: 61  AIRGRDGYDFDGHRLRVELAHGGRGHSSSSDRYSSHGGSRGGRGVSRRSDYRVLVTGLPS 120

Query: 121 SASWQDLKDHMRRAGDVCFAQVFRDGSGTTGIVDYTNSDDMKYAIKKLDDSEFRNAFSRS 180
           SASWQDLKDHMRRAGDVCF+QVFRDGSGTTGIVDYTN DDMKYAIKKLDDSEFRNAFSR+
Sbjct: 121 SASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKYAIKKLDDSEFRNAFSRA 180

Query: 181 YVRVREYDSKRDLSRSPSRGRSRSRGRSYSRS----RSRSKSRSRSKSPKAKSSRRSPVK 240
           YVRVREYDSKRDLSRSPSRGRS SRGRSYSRS    RSRSKS SRSKSPKAKSS+RSPVK
Sbjct: 181 YVRVREYDSKRDLSRSPSRGRSYSRGRSYSRSRSRGRSRSKSHSRSKSPKAKSSQRSPVK 240

Query: 241 SRSRSASPARSRSKSSSLSG 257
           SRSRSASPARSRSKSSSLSG
Sbjct: 241 SRSRSASPARSRSKSSSLSG 260

[Close]

BLAST of Sed0014141 vs. TAIR 10
Match: AT1G02840.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 339.0 bits (868), Expect = 3.4e-93
Identity = 195/275 (70.91%), Postives = 221/275 (80.36%), Query Frame = 0


Query: 1   MSGRASRTIYVGNLPGDIREKEVDDLFYKYGRIAHIELKVPPRPPGYAFVEFEDSEDAED 60
           MS R+SRT+YVGNLPGDIRE+EV+DLF KYG +  I+LKVPPRPPGYAFVEF+D+ DAED
Sbjct: 1   MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60

Query: 61  AIRGRDGYDFDGHRLRVELAHGGRGHSSSSDRYSSQGGSR---------GARGVSRRTDF 120
           AI GRDGYDFDGHRLRVELAHGGR  SS   R S  GG R         G+RG SRR++F
Sbjct: 61  AIHGRDGYDFDGHRLRVELAHGGR-RSSDDTRGSFNGGGRGGGRGRGDGGSRGPSRRSEF 120

Query: 121 RVLVSGLPSSASWQDLKDHMRRAGDVCFAQVFRDGSGTTGIVDYTNSDDMKYAIKKLDDS 180
           RVLV+GLPSSASWQDLKDHMR+ GDVCF+QV+RD  GTTG+VDYT  +DMKYA+KKLDD+
Sbjct: 121 RVLVTGLPSSASWQDLKDHMRKGGDVCFSQVYRDARGTTGVVDYTCYEDMKYALKKLDDT 180

Query: 181 EFRNAFSRSYVRVREYDSKRDLSRSPSRGRSRSRGRSYSR----SRSRSKSRSRSKSPKA 240
           EFRNAFS  YVRVREYDS++D SRSPSRGRS S+ RS SR    SRSRS+SRSRS+SPKA
Sbjct: 181 EFRNAFSNGYVRVREYDSRKD-SRSPSRGRSYSKSRSRSRGRSVSRSRSRSRSRSRSPKA 240

Query: 241 KSSRRSPVK---------SRSRSASPARSRSKSSS 254
           KSSRRSP K         S+SRS SP RSRS+S S
Sbjct: 241 KSSRRSPAKSTSRSPGPRSKSRSPSPRRSRSRSRS 273

[Close]

BLAST of Sed0014141 vs. TAIR 10
Match: AT1G02840.3 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 339.0 bits (868), Expect = 3.4e-93
Identity = 195/275 (70.91%), Postives = 221/275 (80.36%), Query Frame = 0


Query: 1   MSGRASRTIYVGNLPGDIREKEVDDLFYKYGRIAHIELKVPPRPPGYAFVEFEDSEDAED 60
           MS R+SRT+YVGNLPGDIRE+EV+DLF KYG +  I+LKVPPRPPGYAFVEF+D+ DAED
Sbjct: 1   MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60

Query: 61  AIRGRDGYDFDGHRLRVELAHGGRGHSSSSDRYSSQGGSR---------GARGVSRRTDF 120
           AI GRDGYDFDGHRLRVELAHGGR  SS   R S  GG R         G+RG SRR++F
Sbjct: 61  AIHGRDGYDFDGHRLRVELAHGGR-RSSDDTRGSFNGGGRGGGRGRGDGGSRGPSRRSEF 120

Query: 121 RVLVSGLPSSASWQDLKDHMRRAGDVCFAQVFRDGSGTTGIVDYTNSDDMKYAIKKLDDS 180
           RVLV+GLPSSASWQDLKDHMR+ GDVCF+QV+RD  GTTG+VDYT  +DMKYA+KKLDD+
Sbjct: 121 RVLVTGLPSSASWQDLKDHMRKGGDVCFSQVYRDARGTTGVVDYTCYEDMKYALKKLDDT 180

Query: 181 EFRNAFSRSYVRVREYDSKRDLSRSPSRGRSRSRGRSYSR----SRSRSKSRSRSKSPKA 240
           EFRNAFS  YVRVREYDS++D SRSPSRGRS S+ RS SR    SRSRS+SRSRS+SPKA
Sbjct: 181 EFRNAFSNGYVRVREYDSRKD-SRSPSRGRSYSKSRSRSRGRSVSRSRSRSRSRSRSPKA 240

Query: 241 KSSRRSPVK---------SRSRSASPARSRSKSSS 254
           KSSRRSP K         S+SRS SP RSRS+S S
Sbjct: 241 KSSRRSPAKSTSRSPGPRSKSRSPSPRRSRSRSRS 273

[Close]

BLAST of Sed0014141 vs. TAIR 10
Match: AT1G02840.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 338.6 bits (867), Expect = 4.4e-93
Identity = 193/266 (72.56%), Postives = 219/266 (82.33%), Query Frame = 0


Query: 1   MSGRASRTIYVGNLPGDIREKEVDDLFYKYGRIAHIELKVPPRPPGYAFVEFEDSEDAED 60
           MS R+SRT+YVGNLPGDIRE+EV+DLF KYG +  I+LKVPPRPPGYAFVEF+D+ DAED
Sbjct: 1   MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60

Query: 61  AIRGRDGYDFDGHRLRVELAHGGRGHSSSSDRYSSQGGSR---------GARGVSRRTDF 120
           AI GRDGYDFDGHRLRVELAHGGR  SS   R S  GG R         G+RG SRR++F
Sbjct: 61  AIHGRDGYDFDGHRLRVELAHGGR-RSSDDTRGSFNGGGRGGGRGRGDGGSRGPSRRSEF 120

Query: 121 RVLVSGLPSSASWQDLKDHMRRAGDVCFAQVFRDGSGTTGIVDYTNSDDMKYAIKKLDDS 180
           RVLV+GLPSSASWQDLKDHMR+ GDVCF+QV+RD  GTTG+VDYT  +DMKYA+KKLDD+
Sbjct: 121 RVLVTGLPSSASWQDLKDHMRKGGDVCFSQVYRDARGTTGVVDYTCYEDMKYALKKLDDT 180

Query: 181 EFRNAFSRSYVRVREYDSKRDLSRSPSRGRSRSRGRSYSR----SRSRSKSRSRSKSPKA 240
           EFRNAFS  YVRVREYDS++D SRSPSRGRS S+ RS SR    SRSRS+SRSRS+SPKA
Sbjct: 181 EFRNAFSNGYVRVREYDSRKD-SRSPSRGRSYSKSRSRSRGRSVSRSRSRSRSRSRSPKA 240

Query: 241 KSSRRSPVKSRSRSASPARSRSKSSS 254
           KSSRRSP KS SRS  P RS+S+S S
Sbjct: 241 KSSRRSPAKSTSRSPGP-RSKSRSPS 263

[Close]

BLAST of Sed0014141 vs. TAIR 10
Match: AT4G02430.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 329.7 bits (844), Expect = 2.1e-90
Identity = 195/268 (72.76%), Postives = 220/268 (82.09%), Query Frame = 0


Query: 1   MSGRASRTIYVGNLPGDIREKEVDDLFYKYGRIAHIELKVPPRPPGYAFVEFEDSEDAED 60
           MS R+SRTIYVGNLPGDIRE+EV+DLF KYG +  I+LK+PPRPPGYAFVEFED+ DA+D
Sbjct: 1   MSSRSSRTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADD 60

Query: 61  AIRGRDGYDFDGHRLRVELAHGGRGHS-SSSDRYSSQG-GSRGA-------RGVSRRTDF 120
           AI GRDGYDFDGH LRVELAHGGR  S  +   YS +G G RG        RG SRR+++
Sbjct: 61  AIYGRDGYDFDGHHLRVELAHGGRRSSHDARGSYSGRGRGGRGGGDGGGRERGPSRRSEY 120

Query: 121 RVLVSGLPSSASWQDLKDHMRRAGDVCFAQVFRDGSGTTGIVDYTNSDDMKYAIKKLDDS 180
           RV+VSGLPSSASWQDLKDHMR+ G+VCF+QVFRDG GTTGIVDYT+ +DMKYA   LDD+
Sbjct: 121 RVVVSGLPSSASWQDLKDHMRKGGEVCFSQVFRDGRGTTGIVDYTSYEDMKYA---LDDT 180

Query: 181 EFRNAFSRSYVRVREYDSKRDLSRSPSRGR----SRSRGRSYSRSRSRSKSRSRSKSPKA 240
           EFRNAFS  YVRVREYDS+RD SRSPSRGR    SRSRGRS SRSRSRS+SRS+S+SPKA
Sbjct: 181 EFRNAFSHEYVRVREYDSRRD-SRSPSRGRSYSKSRSRGRSPSRSRSRSRSRSKSRSPKA 240

Query: 241 KSSRRSPVKSRSRSASPARSRSKSSSLS 256
           KS RRSP KS SRS   +RSRSKS SLS
Sbjct: 241 KSLRRSPAKSTSRSPR-SRSRSKSRSLS 263

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BLAST of Sed0014141 vs. TAIR 10
Match: AT3G49430.1 (SER/ARG-rich protein 34A )

HSP 1 Score: 307.0 bits (785), Expect = 1.4e-83
Identity = 178/269 (66.17%), Postives = 207/269 (76.95%), Query Frame = 0


Query: 1   MSGRASRTIYVGNLPGDIREKEVDDLFYKYGRIAHIELKVPPRPPGYAFVEFEDSEDAED 60
           MSGR SR+IYVGNLPGDIRE E++D+FYKYGRI  IELKVPPRPP Y FVEFE S DAED
Sbjct: 1   MSGRFSRSIYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAED 60

Query: 61  AIRGRDGYDFDGHRLRVELAHGGRGHSSSSDR---------YSSQGGSRGAR--GVSRRT 120
           AI+GRDGY+ DG RLRVELAHGGRG SSS  R         Y   GG  G+   GVSR +
Sbjct: 61  AIKGRDGYNLDGCRLRVELAHGGRGQSSSDRRGGYGGGGSGYGGGGGGGGSARFGVSRHS 120

Query: 121 DFRVLVSGLPSSASWQDLKDHMRRAGDVCFAQVFRDGSGTTGIVDYTNSDDMKYAIKKLD 180
           +FRV+V GLPSSASWQDLKDHMR+AGDVCFA+V RD  GT G+VDYTN DDMKYAI+KLD
Sbjct: 121 EFRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVTRDSDGTYGVVDYTNYDDMKYAIRKLD 180

Query: 181 DSEFRNAFSRSYVRVREYDSKRDLSRSPSRGRSRSRGRSYSRSR----SRSKSRSRSKSP 240
           D+EFRN ++R ++RV++Y+S R  SRSPSR RSRSR RS SR R    SRS+S SRSKSP
Sbjct: 181 DTEFRNPWARGFIRVKKYESSRSRSRSPSRSRSRSRSRSRSRGRGRSHSRSRSLSRSKSP 240

Query: 241 K---AKSSRRSPVKSRSRSASPARSRSKS 252
           +   +KS RRS  +S S+S SP+  + KS
Sbjct: 241 RKDLSKSPRRSLSRSISKSRSPSPDKKKS 269

The following BLAST results are available for this feature:

BLAST of Sed0014141 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022148221.1	7.3e-122	92.69	serine/arginine-rich-splicing factor SR34-like isoform X3 [Momordica charantia]	[more]
XP_022148198.1	7.3e-122	92.69	serine/arginine-rich-splicing factor SR34-like isoform X1 [Momordica charantia]	[more]
XP_008451568.1	1.1e-120	91.92	PREDICTED: serine/arginine-rich-splicing factor SR34-like isoform X1 [Cucumis me...	[more]
KAA0067995.1	1.1e-120	91.92	serine/arginine-rich-splicing factor SR34-like isoform X1 [Cucumis melo var. mak...	[more]
XP_038898762.1	1.1e-120	91.92	serine/arginine-rich-splicing factor SR34-like isoform X1 [Benincasa hispida]	[more]

BLAST of Sed0014141 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O22315	4.8e-92	70.91	Serine/arginine-rich-splicing factor SR34 OS=Arabidopsis thaliana OX=3702 GN=SR3...	[more]
F4JHI7	2.9e-89	72.76	Serine/arginine-rich splicing factor SR34B OS=Arabidopsis thaliana OX=3702 GN=SR...	[more]
A2RVS6	2.0e-82	66.17	Serine/arginine-rich splicing factor SR34A OS=Arabidopsis thaliana OX=3702 GN=SR...	[more]
Q9XFR5	5.7e-77	65.78	Serine/arginine-rich splicing factor SR30 OS=Arabidopsis thaliana OX=3702 GN=SR3...	[more]
Q0VCY7	4.2e-56	56.56	Serine/arginine-rich splicing factor 1 OS=Bos taurus OX=9913 GN=SRSF1 PE=2 SV=1	[more]

BLAST of Sed0014141 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D3F5	3.5e-122	92.69	serine/arginine-rich-splicing factor SR34-like isoform X1 OS=Momordica charantia...	[more]
A0A6J1D4Q8	3.5e-122	92.69	serine/arginine-rich-splicing factor SR34-like isoform X3 OS=Momordica charantia...	[more]
A0A1S4DYP1	5.1e-121	91.92	serine/arginine-rich-splicing factor SR34-like isoform X4 OS=Cucumis melo OX=365...	[more]
A0A5D3D2K1	5.1e-121	91.92	Serine/arginine-rich-splicing factor SR34-like isoform X1 OS=Cucumis melo var. m...	[more]
A0A1S4DYM7	5.1e-121	91.92	serine/arginine-rich-splicing factor SR34-like isoform X3 OS=Cucumis melo OX=365...	[more]

BLAST of Sed0014141 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G02840.1	3.4e-93	70.91	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G02840.3	3.4e-93	70.91	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G02840.2	4.4e-93	72.56	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G02430.2	2.1e-90	72.76	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G49430.1	1.4e-83	66.17	SER/ARG-rich protein 34A	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 112..183 e-value: 1.3E-7 score: 41.3 coord: 8..78 e-value: 3.7E-22 score: 89.6
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 9..76 e-value: 5.5E-18 score: 64.6 coord: 113..175 e-value: 5.9E-11 score: 42.0
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 7..82 score: 18.853777
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 111..189 score: 10.121413
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 2..110 e-value: 6.9E-27 score: 96.2
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 111..188 e-value: 3.2E-23 score: 83.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 263..305
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 87..102
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 200..235
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 186..321
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 80..105
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 236..262
None	No IPR available	PANTHER	PTHR23147:SF198	PRE-MRNA-SPLICING FACTOR SF2-LIKE PROTEIN	coord: 3..279
None	No IPR available	PANTHER	PTHR23147	SERINE/ARGININE RICH SPLICING FACTOR	coord: 3..279
None	No IPR available	CDD	cd12599	RRM1_SF2_plant_like	coord: 8..79 e-value: 4.56194E-43 score: 141.058
None	No IPR available	CDD	cd12602	RRM2_SF2_plant_like	coord: 111..186 e-value: 6.556E-45 score: 145.727
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 6..176

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0014141.1	Sed0014141.1	mRNA
Sed0014141.2	Sed0014141.2	mRNA
Sed0014141.3	Sed0014141.3	mRNA
Sed0014141.4	Sed0014141.4	mRNA
Sed0014141.5	Sed0014141.5	mRNA
Sed0014141.6	Sed0014141.6	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding