Sed0014058 (gene) Chayote v1

Overview


Name	Sed0014058
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Protein FAM204A
Location	LG11: 36033279 .. 36034298 (+)
RNA-Seq Expression	Sed0014058
Synteny	Sed0014058

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGATGGTGAAGACAGAATGGCAGTTGCGTCCTCTTCGCTTCGGCAACAAAACCCTAATTTTCTTAAACCTAATAAAGGACTCACTCACCACCAGCTCTCCAAATTCCAGGTACGCTTCATTTCCTGTGACCATAATCATCTCTAAATTTCTACCATTTCACTTCCCTTCTTTTTACTTTTAATTTCTCCTAAATATATCATATTTGTTCATCCCTAACTATAATAATCTCTCTTTTCATCATCAATTTTATATGTCAGCAACTTCACACGAGGCGGCTACAAATAAAATCCAACTCAAACATAAGAAAGTATAAGAAAGGTATTTGTATTTCCAATTCATTGCATCCTCCTCCAAGGCTTCTTATGTTTTCATTTTCAACTCCTTTTTGGAAAAAAAAAATAGGTGCCACTGGGAAATCCCAAATCAAACACCAGAACACCAGTGATGAAGTTAATGAAGCTGAACACTCGAGTTTTCCCAATTCTGATGTTGCTTTTGGAGAAAATAGCTCCCATCTTCACCAACATAACACAAAAGCTACACTTCCATCCAAAAAGCTACAAAAGTTACATTGGGGGTATGACATAGATACTACCAAAAATATCACCTTGCAATTCAATATATTAAATAATATGCATACATCATCATACATGCTTTGTAATGGTTGAACACCCCAAAATGTTAAAGCCAAGAATGGACTACCCATATCTCCAATAAGACATTCTAAGATGATAGCAAGTCGAGTACAGTACATGGCTCGGCTGTACTCCGTAAGCTCTTTTGTAGTTTATCAGCTTGGGGGAATTTTTCATTAGCTCTGAGGTCGGAGATATGTTTCATTTGTGTTCTCTGGCAATGAATGAAGCTTTTGTTGTTATTTTATTGAAGGAAAAGAAGAAAATTGGAGAGTTTTGATGGGAAACTAGACTTGACCTCATCTGTTATCTGACATAGTGATGTTTATATGTTAGGCTTGACACCAAGGAACCATGGGAAAGGAAGGCAAACATGTAA

mRNA sequence

ATGGGAGATGGTGAAGACAGAATGGCAGTTGCGTCCTCTTCGCTTCGGCAACAAAACCCTAATTTTCTTAAACCTAATAAAGGACTCACTCACCACCAGCTCTCCAAATTCCAGCAACTTCACACGAGGCGGCTACAAATAAAATCCAACTCAAACATAAGAAAGTATAAGAAAGGTGCCACTGGGAAATCCCAAATCAAACACCAGAACACCAGTGATGAAGTTAATGAAGCTGAACACTCGAGTTTTCCCAATTCTGATGTTGCTTTTGGAGAAAATAGCTCCCATCTTCACCAACATAACACAAAAGCTACACTTCCATCCAAAAAGCTACAAAAGTTACATTGGGGGCTTGACACCAAGGAACCATGGGAAAGGAAGGCAAACATGTAA

Coding sequence (CDS)

ATGGGAGATGGTGAAGACAGAATGGCAGTTGCGTCCTCTTCGCTTCGGCAACAAAACCCTAATTTTCTTAAACCTAATAAAGGACTCACTCACCACCAGCTCTCCAAATTCCAGCAACTTCACACGAGGCGGCTACAAATAAAATCCAACTCAAACATAAGAAAGTATAAGAAAGGTGCCACTGGGAAATCCCAAATCAAACACCAGAACACCAGTGATGAAGTTAATGAAGCTGAACACTCGAGTTTTCCCAATTCTGATGTTGCTTTTGGAGAAAATAGCTCCCATCTTCACCAACATAACACAAAAGCTACACTTCCATCCAAAAAGCTACAAAAGTTACATTGGGGGCTTGACACCAAGGAACCATGGGAAAGGAAGGCAAACATGTAA

Protein sequence

MGDGEDRMAVASSSLRQQNPNFLKPNKGLTHHQLSKFQQLHTRRLQIKSNSNIRKYKKGATGKSQIKHQNTSDEVNEAEHSSFPNSDVAFGENSSHLHQHNTKATLPSKKLQKLHWGLDTKEPWERKANM

Homology

[Close]

BLAST of Sed0014058 vs. NCBI nr
Match: XP_022961779.1 (uncharacterized protein LOC111462444 isoform X1 [Cucurbita moschata])

HSP 1 Score: 160.2 bits (404), Expect = 1.2e-35
Identity = 88/131 (67.18%), Postives = 95/131 (72.52%), Query Frame = 0


Query: 1   MGDGE-DRMAVASSSLRQQNPNFLKPNKGLTHHQLSKFQQLHTRRLQIKSNSNIRKYKKG 60
           M D E +R A   +S     PNF    KG+TH QLSKFQ+LH RRLQIKS S IRK  KG
Sbjct: 1   MADEEGERRAPEIASTPSLQPNFRPKPKGVTHEQLSKFQELHRRRLQIKSRSKIRKNTKG 60

Query: 61  ATGKSQIKHQNTSDEVNEAEHSSFPNSDVAFGENSSHLHQHNTKATLPSKKLQKLHWGLD 120
            TGKSQIK  NT DEVNEAEHS   NSDV FGE SSH+ + NT  TLPSK+L KLHWGLD
Sbjct: 61  LTGKSQIKDLNTIDEVNEAEHSRLSNSDVDFGEKSSHVQRDNTTTTLPSKRLHKLHWGLD 120

Query: 121 TKEPWERKANM 131
           TKEPWERKANM
Sbjct: 121 TKEPWERKANM 131

[Close]

BLAST of Sed0014058 vs. NCBI nr
Match: KAG6602700.1 (hypothetical protein SDJN03_07933, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 157.1 bits (396), Expect = 1.0e-34
Identity = 87/131 (66.41%), Postives = 94/131 (71.76%), Query Frame = 0


Query: 1   MGDGE-DRMAVASSSLRQQNPNFLKPNKGLTHHQLSKFQQLHTRRLQIKSNSNIRKYKKG 60
           M D E +R A   +S     PNF    KG+TH QLSKFQ+LH RRLQIKS S IRK  KG
Sbjct: 1   MADEEGERRAPEIASTPSLQPNFKPKPKGVTHEQLSKFQELHRRRLQIKSRSKIRKNTKG 60

Query: 61  ATGKSQIKHQNTSDEVNEAEHSSFPNSDVAFGENSSHLHQHNTKATLPSKKLQKLHWGLD 120
            TGKSQIK  N+ DEVNEAEHS   NSDV FG  SSH+ + NT  TLPSKKL KLHWGLD
Sbjct: 61  LTGKSQIKDLNSIDEVNEAEHSRLSNSDVNFGGKSSHVQRDNTTTTLPSKKLHKLHWGLD 120

Query: 121 TKEPWERKANM 131
           TKEPWERKANM
Sbjct: 121 TKEPWERKANM 131

[Close]

BLAST of Sed0014058 vs. NCBI nr
Match: XP_023517500.1 (uncharacterized protein LOC111781219 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023517583.1 uncharacterized protein LOC111781219 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 156.8 bits (395), Expect = 1.3e-34
Identity = 86/131 (65.65%), Postives = 94/131 (71.76%), Query Frame = 0


Query: 1   MGDGE-DRMAVASSSLRQQNPNFLKPNKGLTHHQLSKFQQLHTRRLQIKSNSNIRKYKKG 60
           M D E +R +   +S     PNF    KG+TH QLSKFQ+LH RRLQIKS S IRK  KG
Sbjct: 1   MADEEGERRSPEIASTPSLQPNFKPKPKGVTHEQLSKFQELHRRRLQIKSRSKIRKNTKG 60

Query: 61  ATGKSQIKHQNTSDEVNEAEHSSFPNSDVAFGENSSHLHQHNTKATLPSKKLQKLHWGLD 120
            TGKSQIK  NT DEV E EHS   +SDV FGE SSH+ + NTK TLPSKKL KLHWGLD
Sbjct: 61  LTGKSQIKDLNTIDEVTEVEHSRLSSSDVDFGEKSSHVQRDNTKTTLPSKKLHKLHWGLD 120

Query: 121 TKEPWERKANM 131
           TKEPWERKANM
Sbjct: 121 TKEPWERKANM 131

[Close]

BLAST of Sed0014058 vs. NCBI nr
Match: XP_022991050.1 (uncharacterized protein LOC111487757 isoform X1 [Cucurbita maxima])

HSP 1 Score: 152.9 bits (385), Expect = 1.9e-33
Identity = 79/110 (71.82%), Postives = 86/110 (78.18%), Query Frame = 0


Query: 21  NFLKPNKGLTHHQLSKFQQLHTRRLQIKSNSNIRKYKKGATGKSQIKHQNTSDEVNEAEH 80
           NF    KG+TH QLSKFQ+LH RRLQIKS S IRK  KG TGKSQIK  NT DEVNE EH
Sbjct: 22  NFKPKPKGVTHEQLSKFQELHRRRLQIKSRSKIRKNTKGLTGKSQIKDLNTIDEVNEDEH 81

Query: 81  SSFPNSDVAFGENSSHLHQHNTKATLPSKKLQKLHWGLDTKEPWERKANM 131
           S   +SD+ FGE +SH+ + NTK TLPSKKL KLHWGLDTKEPWERKANM
Sbjct: 82  SRLSSSDIDFGEKNSHVQRDNTKTTLPSKKLHKLHWGLDTKEPWERKANM 131

[Close]

BLAST of Sed0014058 vs. NCBI nr
Match: XP_008441256.1 (PREDICTED: uncharacterized protein LOC103485441 [Cucumis melo] >XP_008441257.1 PREDICTED: uncharacterized protein LOC103485441 [Cucumis melo])

HSP 1 Score: 147.1 bits (370), Expect = 1.0e-31
Identity = 87/132 (65.91%), Postives = 95/132 (71.97%), Query Frame = 0


Query: 1   MGDGE--DRMAVASSSLRQQNPNFLKPNKGLTHHQLSKFQQLHTRRLQIKSNSNIRKYKK 60
           M DGE  +   +A++S     PNF KP K +T  QLSKFQ+L  RRLQIKS S IRK  K
Sbjct: 1   MEDGEEYESRGLANASSSSLQPNF-KP-KRVTKEQLSKFQELQRRRLQIKSRSKIRKNTK 60

Query: 61  GATGKSQIKHQNTSDEVNEAEHSSFPNSDVAFGENSSHLHQHNTKATLPSKKLQKLHWGL 120
            ATGKSQIKH NTS+EVNEAEHS   NSDV FGE SS +    TK TL SKKL KLHWGL
Sbjct: 61  DATGKSQIKHLNTSNEVNEAEHSRLSNSDVDFGEKSSLVQDDKTKTTLSSKKLHKLHWGL 120

Query: 121 DTKEPWERKANM 131
           DTKEPWERKANM
Sbjct: 121 DTKEPWERKANM 130

[Close]

BLAST of Sed0014058 vs. ExPASy TrEMBL
Match: A0A6J1HF11 (uncharacterized protein LOC111462444 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111462444 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 5.7e-36
Identity = 88/131 (67.18%), Postives = 95/131 (72.52%), Query Frame = 0


Query: 1   MGDGE-DRMAVASSSLRQQNPNFLKPNKGLTHHQLSKFQQLHTRRLQIKSNSNIRKYKKG 60
           M D E +R A   +S     PNF    KG+TH QLSKFQ+LH RRLQIKS S IRK  KG
Sbjct: 1   MADEEGERRAPEIASTPSLQPNFRPKPKGVTHEQLSKFQELHRRRLQIKSRSKIRKNTKG 60

Query: 61  ATGKSQIKHQNTSDEVNEAEHSSFPNSDVAFGENSSHLHQHNTKATLPSKKLQKLHWGLD 120
            TGKSQIK  NT DEVNEAEHS   NSDV FGE SSH+ + NT  TLPSK+L KLHWGLD
Sbjct: 61  LTGKSQIKDLNTIDEVNEAEHSRLSNSDVDFGEKSSHVQRDNTTTTLPSKRLHKLHWGLD 120

Query: 121 TKEPWERKANM 131
           TKEPWERKANM
Sbjct: 121 TKEPWERKANM 131

[Close]

BLAST of Sed0014058 vs. ExPASy TrEMBL
Match: A0A6J1JRS8 (uncharacterized protein LOC111487757 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111487757 PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 9.1e-34
Identity = 79/110 (71.82%), Postives = 86/110 (78.18%), Query Frame = 0


Query: 21  NFLKPNKGLTHHQLSKFQQLHTRRLQIKSNSNIRKYKKGATGKSQIKHQNTSDEVNEAEH 80
           NF    KG+TH QLSKFQ+LH RRLQIKS S IRK  KG TGKSQIK  NT DEVNE EH
Sbjct: 22  NFKPKPKGVTHEQLSKFQELHRRRLQIKSRSKIRKNTKGLTGKSQIKDLNTIDEVNEDEH 81

Query: 81  SSFPNSDVAFGENSSHLHQHNTKATLPSKKLQKLHWGLDTKEPWERKANM 131
           S   +SD+ FGE +SH+ + NTK TLPSKKL KLHWGLDTKEPWERKANM
Sbjct: 82  SRLSSSDIDFGEKNSHVQRDNTKTTLPSKKLHKLHWGLDTKEPWERKANM 131

[Close]

BLAST of Sed0014058 vs. ExPASy TrEMBL
Match: A0A1S3B3S6 (uncharacterized protein LOC103485441 OS=Cucumis melo OX=3656 GN=LOC103485441 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 5.0e-32
Identity = 87/132 (65.91%), Postives = 95/132 (71.97%), Query Frame = 0


Query: 1   MGDGE--DRMAVASSSLRQQNPNFLKPNKGLTHHQLSKFQQLHTRRLQIKSNSNIRKYKK 60
           M DGE  +   +A++S     PNF KP K +T  QLSKFQ+L  RRLQIKS S IRK  K
Sbjct: 1   MEDGEEYESRGLANASSSSLQPNF-KP-KRVTKEQLSKFQELQRRRLQIKSRSKIRKNTK 60

Query: 61  GATGKSQIKHQNTSDEVNEAEHSSFPNSDVAFGENSSHLHQHNTKATLPSKKLQKLHWGL 120
            ATGKSQIKH NTS+EVNEAEHS   NSDV FGE SS +    TK TL SKKL KLHWGL
Sbjct: 61  DATGKSQIKHLNTSNEVNEAEHSRLSNSDVDFGEKSSLVQDDKTKTTLSSKKLHKLHWGL 120

Query: 121 DTKEPWERKANM 131
           DTKEPWERKANM
Sbjct: 121 DTKEPWERKANM 130

[Close]

BLAST of Sed0014058 vs. ExPASy TrEMBL
Match: A0A6J1BWD6 (uncharacterized protein LOC111006121 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111006121 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 3.2e-31
Identity = 84/129 (65.12%), Postives = 92/129 (71.32%), Query Frame = 0


Query: 2   GDGEDRMAVASSSLRQQNPNFLKPNKGLTHHQLSKFQQLHTRRLQIKSNSNIRKYKKGAT 61
           G+GE R    +S+   Q PNF KP KG+TH QLSKFQ+LH RRLQIKS S IRK  K   
Sbjct: 6   GEGEWRDEPIASTPSLQ-PNF-KP-KGVTHEQLSKFQELHRRRLQIKSRSKIRKNTKDTR 65

Query: 62  GKSQIKHQNTSDEVNEAEHSSFPNSDVAFGENSSHLHQHNTKATLPSKKLQKLHWGLDTK 121
           GKSQI+H N SD  NEAE S   NSDV  GE S+H+ Q  TK  LPSKKL KLHWGLDTK
Sbjct: 66  GKSQIRHLNISDRGNEAEQSKHSNSDVDLGEKSTHVQQDKTKTMLPSKKLHKLHWGLDTK 125

Query: 122 EPWERKANM 131
           EPWERKANM
Sbjct: 126 EPWERKANM 131

[Close]

BLAST of Sed0014058 vs. ExPASy TrEMBL
Match: A0A0A0LMI7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G404820 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 5.5e-31
Identity = 86/134 (64.18%), Postives = 94/134 (70.15%), Query Frame = 0


Query: 1   MGDGED----RMAVASSSLRQQNPNFLKPNKGLTHHQLSKFQQLHTRRLQIKSNSNIRKY 60
           M DGE+     +  ASSS  Q N    KPN+ +T  Q SKFQ+L  RRLQIKS S IRK 
Sbjct: 1   MEDGEEDESRGLENASSSSLQPNS---KPNR-VTKEQFSKFQELQRRRLQIKSRSKIRKN 60

Query: 61  KKGATGKSQIKHQNTSDEVNEAEHSSFPNSDVAFGENSSHLHQHNTKATLPSKKLQKLHW 120
            K ATGKSQ+ H NTS+EVNEAEHS   NSDV FGE SS +    TK TLPSKKL KLHW
Sbjct: 61  TKDATGKSQLNHLNTSNEVNEAEHSRLSNSDVDFGEKSSLVQHDKTKTTLPSKKLHKLHW 120

Query: 121 GLDTKEPWERKANM 131
           GLDTKEPWERKANM
Sbjct: 121 GLDTKEPWERKANM 130

[Close]

BLAST of Sed0014058 vs. TAIR 10
Match: AT5G16160.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 75.1 bits (183), Expect = 4.7e-14
Identity = 50/126 (39.68%), Postives = 65/126 (51.59%), Query Frame = 0


Query: 5   EDRMAVASSSLRQQNPNFLKPNKGLTHHQLSKFQQLHTRRLQIKSNSNIRKYKKGATGKS 64
           E+R     +S     PNF + N  LT  Q+SK Q+LH RR+QIK+N+ I K K  A+  S
Sbjct: 16  ENRKEALLASTLSLQPNFNRSN--LTQKQISKLQELHKRRMQIKANAKIHKKKPKASKNS 75

Query: 65  QIKHQNTSDEVNEAEHSSFPNSDVAFGENSSHLHQHNTKATLPSKKLQKLHWGLDTKEPW 124
           Q      S  + + E S       +   ++     HN       KK QKL WGLDT+E W
Sbjct: 76  Q------SKAIEDGESSKKLKEPTSSSSSTLEEQNHNKTVVTVPKKPQKLFWGLDTRERW 133

Query: 125 ERKANM 131
           ERKANM
Sbjct: 136 ERKANM 133

The following BLAST results are available for this feature:

BLAST of Sed0014058 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022961779.1	1.2e-35	67.18	uncharacterized protein LOC111462444 isoform X1 [Cucurbita moschata]	[more]
KAG6602700.1	1.0e-34	66.41	hypothetical protein SDJN03_07933, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023517500.1	1.3e-34	65.65	uncharacterized protein LOC111781219 isoform X1 [Cucurbita pepo subsp. pepo] >XP...	[more]
XP_022991050.1	1.9e-33	71.82	uncharacterized protein LOC111487757 isoform X1 [Cucurbita maxima]	[more]
XP_008441256.1	1.0e-31	65.91	PREDICTED: uncharacterized protein LOC103485441 [Cucumis melo] >XP_008441257.1 P...	[more]

BLAST of Sed0014058 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0014058 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HF11	5.7e-36	67.18	uncharacterized protein LOC111462444 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1JRS8	9.1e-34	71.82	uncharacterized protein LOC111487757 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A1S3B3S6	5.0e-32	65.91	uncharacterized protein LOC103485441 OS=Cucumis melo OX=3656 GN=LOC103485441 PE=...	[more]
A0A6J1BWD6	3.2e-31	65.12	uncharacterized protein LOC111006121 isoform X1 OS=Momordica charantia OX=3673 G...	[more]
A0A0A0LMI7	5.5e-31	64.18	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G404820 PE=4 SV=1	[more]

BLAST of Sed0014058 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G16160.1	4.7e-14	39.68	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 11..69
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 76..108
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..109
IPR037690	Protein FAM204A	PANTHER	PTHR14386	PROTEIN FAM204A	coord: 92..130 coord: 5..74

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0014058.1	Sed0014058.1	mRNA