Sed0014034 (gene) Chayote v1

Overview


Name	Sed0014034
Type	gene
Organism	Sechium edule (Chayote v1)
Description	arabinogalactan peptide 23-like
Location	LG09: 37849967 .. 37850158 (+)
RNA-Seq Expression	Sed0014034
Synteny	Sed0014034

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAATCAAGAACTTTTCCTGTGCTGCCCTCTTCGCTGCCGCTACCGTTACGGTAGTCGTGGCCTCCGAGGAGTCTCTCTCCCCGGCCGCTGCCCCTGGCCCGAGCAGCGCTGCCTCCGCTGCTCTTCCCGCTCTTGGATCGCTCGTCGGGGCCTCGCTTGTTTCCTTCGTTGCCTACCTCTTGAACTGA

mRNA sequence

ATGGAAATCAAGAACTTTTCCTGTGCTGCCCTCTTCGCTGCCGCTACCGTTACGGTAGTCGTGGCCTCCGAGGAGTCTCTCTCCCCGGCCGCTGCCCCTGGCCCGAGCAGCGCTGCCTCCGCTGCTCTTCCCGCTCTTGGATCGCTCGTCGGGGCCTCGCTTGTTTCCTTCGTTGCCTACCTCTTGAACTGA

Coding sequence (CDS)

ATGGAAATCAAGAACTTTTCCTGTGCTGCCCTCTTCGCTGCCGCTACCGTTACGGTAGTCGTGGCCTCCGAGGAGTCTCTCTCCCCGGCCGCTGCCCCTGGCCCGAGCAGCGCTGCCTCCGCTGCTCTTCCCGCTCTTGGATCGCTCGTCGGGGCCTCGCTTGTTTCCTTCGTTGCCTACCTCTTGAACTGA

Protein sequence

MEIKNFSCAALFAAATVTVVVASEESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAYLLN

Homology

[Close]

BLAST of Sed0014034 vs. NCBI nr
Match: XP_023528634.1 (arabinogalactan peptide 23 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 95.1 bits (235), Expect = 2.3e-16
Identity = 55/63 (87.30%), Postives = 60/63 (95.24%), Query Frame = 0


Query: 1  MEIKNFSCAALFAAATVTVVVASEESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAY 60
          ME+KN +CAALFAAA VT VVAS+ESLSPAAAPGPSSAASAALPALGSL+GASLVSFVAY
Sbjct: 1  MEMKNIACAALFAAAAVTAVVASDESLSPAAAPGPSSAASAALPALGSLIGASLVSFVAY 60

Query: 61 LLN 64
          +LN
Sbjct: 61 VLN 63

[Close]

BLAST of Sed0014034 vs. NCBI nr
Match: XP_023004714.1 (arabinogalactan peptide 23-like [Cucurbita maxima])

HSP 1 Score: 92.8 bits (229), Expect = 1.1e-15
Identity = 55/63 (87.30%), Postives = 58/63 (92.06%), Query Frame = 0


Query: 1  MEIKNFSCAALFAAATVTVVVASEESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAY 60
          ME+K  +CAALFAAATVT VVAS+ESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAY
Sbjct: 1  MEMKKIACAALFAAATVTAVVASDESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAY 60

Query: 61 LLN 64
            N
Sbjct: 61 YFN 63

[Close]

BLAST of Sed0014034 vs. NCBI nr
Match: KAG7025661.1 (Arabinogalactan peptide 23, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 91.3 bits (225), Expect = 3.3e-15
Identity = 54/63 (85.71%), Postives = 58/63 (92.06%), Query Frame = 0


Query: 1  MEIKNFSCAALFAAATVTVVVASEESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAY 60
          ME+K  +CAALFAAATVT VVAS+ESLSPAAAPGPSSAASAALPALGSLVGASLVSFVA+
Sbjct: 1  MEMKKIACAALFAAATVTAVVASDESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAF 60

Query: 61 LLN 64
            N
Sbjct: 61 YFN 63

[Close]

BLAST of Sed0014034 vs. NCBI nr
Match: KAG7018419.1 (Arabinogalactan peptide 23, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 90.9 bits (224), Expect = 4.3e-15
Identity = 53/63 (84.13%), Postives = 58/63 (92.06%), Query Frame = 0


Query: 1  MEIKNFSCAALFAAATVTVVVASEESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAY 60
          ME+KN +CA LFAAA VT VVAS+ES SPAAAPGPSSAASAALPALGSL+GASLVSFVAY
Sbjct: 1  MEMKNIACAVLFAAAAVTAVVASDESHSPAAAPGPSSAASAALPALGSLIGASLVSFVAY 60

Query: 61 LLN 64
          +LN
Sbjct: 61 VLN 63

[Close]

BLAST of Sed0014034 vs. NCBI nr
Match: XP_022960230.1 (arabinogalactan peptide 23-like [Cucurbita moschata])

HSP 1 Score: 90.1 bits (222), Expect = 7.3e-15
Identity = 53/63 (84.13%), Postives = 58/63 (92.06%), Query Frame = 0


Query: 1  MEIKNFSCAALFAAATVTVVVASEESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAY 60
          ME+K  +CAALFAAAT+T VVAS+ESLSPAAAPGPSSAASAALPALGSLVGASLVSFVA+
Sbjct: 1  MEMKKIACAALFAAATLTAVVASDESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAF 60

Query: 61 LLN 64
            N
Sbjct: 61 YFN 63

[Close]

BLAST of Sed0014034 vs. ExPASy Swiss-Prot
Match: Q8S2W4 (Arabinogalactan protein 23 OS=Arabidopsis thaliana OX=3702 GN=AGP23 PE=1 SV=2)

HSP 1 Score: 65.5 bits (158), Expect = 2.5e-10
Identity = 41/63 (65.08%), Postives = 51/63 (80.95%), Query Frame = 0


Query: 1  MEIKNFSCAALFAAATVTVVVASEESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAY 60
          ME+K  +C  LFAAA++T V+A+EE  +P  APGP+SAASAALPALGSLVGASLVS  +Y
Sbjct: 1  MEMKKIACGVLFAAASMTAVMAAEEVGAP--APGPASAASAALPALGSLVGASLVSLFSY 60

Query: 61 LLN 64
           L+
Sbjct: 61 YLH 61

[Close]

BLAST of Sed0014034 vs. ExPASy TrEMBL
Match: A0A6J1KX42 (arabinogalactan peptide 23-like OS=Cucurbita maxima OX=3661 GN=LOC111497929 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 5.4e-16
Identity = 55/63 (87.30%), Postives = 58/63 (92.06%), Query Frame = 0


Query: 1  MEIKNFSCAALFAAATVTVVVASEESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAY 60
          ME+K  +CAALFAAATVT VVAS+ESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAY
Sbjct: 1  MEMKKIACAALFAAATVTAVVASDESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAY 60

Query: 61 LLN 64
            N
Sbjct: 61 YFN 63

[Close]

BLAST of Sed0014034 vs. ExPASy TrEMBL
Match: A0A6J1H8I1 (arabinogalactan peptide 23-like OS=Cucurbita moschata OX=3662 GN=LOC111461032 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 3.5e-15
Identity = 53/63 (84.13%), Postives = 58/63 (92.06%), Query Frame = 0


Query: 1  MEIKNFSCAALFAAATVTVVVASEESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAY 60
          ME+K  +CAALFAAAT+T VVAS+ESLSPAAAPGPSSAASAALPALGSLVGASLVSFVA+
Sbjct: 1  MEMKKIACAALFAAATLTAVVASDESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAF 60

Query: 61 LLN 64
            N
Sbjct: 61 YFN 63

[Close]

BLAST of Sed0014034 vs. ExPASy TrEMBL
Match: A0A6J1IYE9 (arabinogalactan peptide 23-like OS=Cucurbita maxima OX=3661 GN=LOC111479619 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 6.0e-15
Identity = 52/63 (82.54%), Postives = 57/63 (90.48%), Query Frame = 0


Query: 1  MEIKNFSCAALFAAATVTVVVASEESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAY 60
          ME+KN +C ALF AA VT VVAS+ES SPAAAPGPSSAASAALPALGSL+GASLVSFVAY
Sbjct: 1  MEMKNIACTALFTAAAVTAVVASDESHSPAAAPGPSSAASAALPALGSLIGASLVSFVAY 60

Query: 61 LLN 64
          +LN
Sbjct: 61 VLN 63

[Close]

BLAST of Sed0014034 vs. ExPASy TrEMBL
Match: A0A6J1F3F5 (arabinogalactan peptide 23-like OS=Cucurbita moschata OX=3662 GN=LOC111439670 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 7.8e-15
Identity = 53/63 (84.13%), Postives = 56/63 (88.89%), Query Frame = 0


Query: 1  MEIKNFSCAALFAAATVTVVVASEESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAY 60
          ME+K  +CAALFAAATVT VVAS+ESLSPAAAPGPSSAASA LPALGSLVGASLVS VAY
Sbjct: 1  MEMKKIACAALFAAATVTAVVASDESLSPAAAPGPSSAASATLPALGSLVGASLVSLVAY 60

Query: 61 LLN 64
            N
Sbjct: 61 YFN 63

[Close]

BLAST of Sed0014034 vs. ExPASy TrEMBL
Match: A0A0A0L9U8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G697910 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.1e-08
Identity = 41/62 (66.13%), Postives = 50/62 (80.65%), Query Frame = 0


Query: 1  MEIKNFSCAALFAAATVTVVVASEESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAY 60
          ME+K  +CA LFAAATVT VVA++E+L+P  APGPSS A   +PA+GSLVGASL+SF AY
Sbjct: 1  MEMKKIACAVLFAAATVTAVVAADEALAP--APGPSSGAGIGVPAIGSLVGASLLSFAAY 60

Query: 61 LL 63
           L
Sbjct: 61 YL 60

[Close]

BLAST of Sed0014034 vs. TAIR 10
Match: AT3G57690.1 (arabinogalactan protein 23 )

HSP 1 Score: 65.5 bits (158), Expect = 1.8e-11
Identity = 41/63 (65.08%), Postives = 51/63 (80.95%), Query Frame = 0


Query: 1  MEIKNFSCAALFAAATVTVVVASEESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAY 60
          ME+K  +C  LFAAA++T V+A+EE  +P  APGP+SAASAALPALGSLVGASLVS  +Y
Sbjct: 1  MEMKKIACGVLFAAASMTAVMAAEEVGAP--APGPASAASAALPALGSLVGASLVSLFSY 60

Query: 61 LLN 64
           L+
Sbjct: 61 YLH 61

[Close]

BLAST of Sed0014034 vs. TAIR 10
Match: AT2G41905.1 (BEST Arabidopsis thaliana protein match is: arabinogalactan protein 23 (TAIR:AT3G57690.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 55.5 bits (132), Expect = 1.8e-08
Identity = 38/64 (59.38%), Postives = 47/64 (73.44%), Query Frame = 0


Query: 1  MEIKNFSCAALFAAATVTVVVASEESLSPAAAPGP-SSAASAALPALGSLVGASLVSFVA 60
          ME+K  +C  +FAAA++T V+A+E     A APGP +S AS A+PALGSLVGASLVS  A
Sbjct: 1  MEMKKIACGVVFAAASMTAVMAAEVG---APAPGPAASGASVAVPALGSLVGASLVSLFA 60

Query: 61 YLLN 64
          Y LN
Sbjct: 61 YYLN 61

The following BLAST results are available for this feature:

BLAST of Sed0014034 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023528634.1	2.3e-16	87.30	arabinogalactan peptide 23 [Cucurbita pepo subsp. pepo]	[more]
XP_023004714.1	1.1e-15	87.30	arabinogalactan peptide 23-like [Cucurbita maxima]	[more]
KAG7025661.1	3.3e-15	85.71	Arabinogalactan peptide 23, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG7018419.1	4.3e-15	84.13	Arabinogalactan peptide 23, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022960230.1	7.3e-15	84.13	arabinogalactan peptide 23-like [Cucurbita moschata]	[more]

BLAST of Sed0014034 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8S2W4	2.5e-10	65.08	Arabinogalactan protein 23 OS=Arabidopsis thaliana OX=3702 GN=AGP23 PE=1 SV=2	[more]

BLAST of Sed0014034 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KX42	5.4e-16	87.30	arabinogalactan peptide 23-like OS=Cucurbita maxima OX=3661 GN=LOC111497929 PE=4...	[more]
A0A6J1H8I1	3.5e-15	84.13	arabinogalactan peptide 23-like OS=Cucurbita moschata OX=3662 GN=LOC111461032 PE...	[more]
A0A6J1IYE9	6.0e-15	82.54	arabinogalactan peptide 23-like OS=Cucurbita maxima OX=3661 GN=LOC111479619 PE=4...	[more]
A0A6J1F3F5	7.8e-15	84.13	arabinogalactan peptide 23-like OS=Cucurbita moschata OX=3662 GN=LOC111439670 PE...	[more]
A0A0A0L9U8	1.1e-08	66.13	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G697910 PE=4 SV=1	[more]

BLAST of Sed0014034 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G57690.1	1.8e-11	65.08	arabinogalactan protein 23	[more]
AT2G41905.1	1.8e-08	59.38	BEST Arabidopsis thaliana protein match is: arabinogalactan protein 23 (TAIR:AT3...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR044702	Arabinogalactan protein 23/40	PANTHER	PTHR34672	POLLEN-SPECIFIC ARABINOGALACTA PROTEIN BAN102	coord: 1..62

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0014034.1	Sed0014034.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0031225	anchored component of membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005886	plasma membrane