Sed0014020 (gene) Chayote v1

Overview


Name	Sed0014020
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Tryptophan synthase beta type 2
Location	LG05: 38144801 .. 38145213 (+)
RNA-Seq Expression	Sed0014020
Synteny	Sed0014020

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AACCCACAAATTTTTATTTTCATTCTCAACTTCTCTCTGTTTATTGTCATTTTTGTTGTAAATTAATAGATTTTGGTGCAGGTAATTGGAAGGGAAAAGGAAAAGATTTTGATGATGTTTGATTTAGGGAGGATAGTGGTGAATTTGAAAGCAAAGATTTTGAAGTCATTGAAGATGAAGAAGAAGGCTTATTATTATGATAAGATGGAGAAAAGTGAAAGCATGAGAATTGAAATTAGAAGCAGAAAAGCCCAAAAGCTCATCCAAAACACCTTGAAATTTGCTGACTCTCCCACTTCTAAAACTTATGCTTTTTGATTATATATCTCTTCCTCATAGGTAACAAAATTGGAGCCTAATTTGTTGTGGGTGTCTTCAATTTCAATGAGTTTTAGGCTTTTGGCTAAAACCCC

mRNA sequence

AACCCACAAATTTTTATTTTCATTCTCAACTTCTCTCTGTTTATTGTCATTTTTGTTGTAAATTAATAGATTTTGGTGCAGGTAATTGGAAGGGAAAAGGAAAAGATTTTGATGATGTTTGATTTAGGGAGGATAGTGGTGAATTTGAAAGCAAAGATTTTGAAGTCATTGAAGATGAAGAAGAAGGCTTATTATTATGATAAGATGGAGAAAAGTGAAAGCATGAGAATTGAAATTAGAAGCAGAAAAGCCCAAAAGCTCATCCAAAACACCTTGAAATTTGCTGACTCTCCCACTTCTAAAACTTATGCTTTTTGATTATATATCTCTTCCTCATAGGTAACAAAATTGGAGCCTAATTTGTTGTGGGTGTCTTCAATTTCAATGAGTTTTAGGCTTTTGGCTAAAACCCC

Coding sequence (CDS)

ATGATGTTTGATTTAGGGAGGATAGTGGTGAATTTGAAAGCAAAGATTTTGAAGTCATTGAAGATGAAGAAGAAGGCTTATTATTATGATAAGATGGAGAAAAGTGAAAGCATGAGAATTGAAATTAGAAGCAGAAAAGCCCAAAAGCTCATCCAAAACACCTTGAAATTTGCTGACTCTCCCACTTCTAAAACTTATGCTTTTTGA

Protein sequence

MMFDLGRIVVNLKAKILKSLKMKKKAYYYDKMEKSESMRIEIRSRKAQKLIQNTLKFADSPTSKTYAF

Homology

[Close]

BLAST of Sed0014020 vs. NCBI nr
Match: KAG7036740.1 (hypothetical protein SDJN02_00360, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 92.8 bits (229), Expect = 1.2e-15
Identity = 50/61 (81.97%), Postives = 55/61 (90.16%), Query Frame = 0


Query: 7  RIVVNLKAKILKSLKMKKKAYYYDKMEKSESMRIEIRSRKAQKLIQNTLKFADSPTSKTY 66
          R+VVNLKAKI+KSLKMKK    YDKMEKSESMR+EIRSRKAQKLIQ T+K ADSP+SKTY
Sbjct: 3  RLVVNLKAKIMKSLKMKKATDSYDKMEKSESMRVEIRSRKAQKLIQQTMKIADSPSSKTY 62

Query: 67 A 68
          A
Sbjct: 63 A 63

[Close]

BLAST of Sed0014020 vs. NCBI nr
Match: RYQ78961.1 (hypothetical protein Ahy_Scaffold8g108431 [Arachis hypogaea] >RYR60310.1 hypothetical protein Ahy_A04g017389 [Arachis hypogaea])

HSP 1 Score: 89.4 bits (220), Expect = 1.3e-14
Identity = 54/70 (77.14%), Postives = 61/70 (87.14%), Query Frame = 0


Query: 2  MFDLGRIVVNLKAKILKSLKMKKKA--YYYDKMEKSESMRIEIRSRKAQKLIQNTLKFAD 61
          M  LGR+VVNLK+KI KSLKM KKA  YYYDKMEKSESMR+EIRSRKA+KLI++TLK AD
Sbjct: 1  MKGLGRLVVNLKSKI-KSLKMMKKASSYYYDKMEKSESMRVEIRSRKARKLIEDTLKIAD 60

Query: 62 SP-TSKTYAF 69
          SP +SKTY F
Sbjct: 61 SPKSSKTYTF 69

[Close]

BLAST of Sed0014020 vs. NCBI nr
Match: EOY04331.1 (Uncharacterized protein TCM_019614 [Theobroma cacao])

HSP 1 Score: 83.2 bits (204), Expect = 9.6e-13
Identity = 50/69 (72.46%), Postives = 59/69 (85.51%), Query Frame = 0


Query: 1  MMFDLGRIVVNLKAKILKSLKMKKKAYYYDKMEKSESMRIEIRSRKAQKLIQNTLKFADS 60
          MM   GR+VV+LK+K L+ LKMKK A YYDK+EKSESMR+EIRSRKA+KLI+ T+K ADS
Sbjct: 5  MMMGFGRLVVSLKSK-LRYLKMKKPA-YYDKIEKSESMRVEIRSRKARKLIEETMKIADS 64

Query: 61 P-TSKTYAF 69
          P TSKTYAF
Sbjct: 65 PRTSKTYAF 71

[Close]

BLAST of Sed0014020 vs. NCBI nr
Match: QHO17494.1 (uncharacterized protein DS421_10g312660 [Arachis hypogaea] >QHO17495.1 uncharacterized protein DS421_10g312660 [Arachis hypogaea])

HSP 1 Score: 82.0 bits (201), Expect = 2.1e-12
Identity = 46/73 (63.01%), Postives = 57/73 (78.08%), Query Frame = 0


Query: 2  MFDLGRIVVNLKAKILKSL------KMKKKAYYYDKMEKSESMRIEIRSRKAQKLIQNTL 61
          M  L R+V+ LK+KI++ L      K  K +YYYDK+EKSESMR+EIRSRKA+KLI+ TL
Sbjct: 1  MMGLRRLVLTLKSKIIRCLKNNNNNKNNKHSYYYDKVEKSESMRMEIRSRKARKLIEETL 60

Query: 62 KFADSPTSKTYAF 69
          K ADSPTSKT+AF
Sbjct: 61 KIADSPTSKTFAF 73

[Close]

BLAST of Sed0014020 vs. NCBI nr
Match: QHN83931.1 (uncharacterized protein DS421_20g709010 [Arachis hypogaea] >QHN83932.1 uncharacterized protein DS421_20g709010 [Arachis hypogaea] >RYQ86255.1 hypothetical protein Ahy_B10g105937 [Arachis hypogaea])

HSP 1 Score: 80.5 bits (197), Expect = 6.2e-12
Identity = 45/73 (61.64%), Postives = 57/73 (78.08%), Query Frame = 0


Query: 2  MFDLGRIVVNLKAKILKSL------KMKKKAYYYDKMEKSESMRIEIRSRKAQKLIQNTL 61
          M  L R+V+ LK+KI++ L         K +YYYDK+EKSESMR+EIRSRKA+KLI++TL
Sbjct: 1  MMGLRRLVLTLKSKIIRCLMKNNNNNNNKHSYYYDKVEKSESMRMEIRSRKARKLIEDTL 60

Query: 62 KFADSPTSKTYAF 69
          K ADSPTSKT+AF
Sbjct: 61 KIADSPTSKTFAF 73

[Close]

BLAST of Sed0014020 vs. ExPASy TrEMBL
Match: A0A445DAW0 (Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_A04g017389 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 6.5e-15
Identity = 54/70 (77.14%), Postives = 61/70 (87.14%), Query Frame = 0


Query: 2  MFDLGRIVVNLKAKILKSLKMKKKA--YYYDKMEKSESMRIEIRSRKAQKLIQNTLKFAD 61
          M  LGR+VVNLK+KI KSLKM KKA  YYYDKMEKSESMR+EIRSRKA+KLI++TLK AD
Sbjct: 1  MKGLGRLVVNLKSKI-KSLKMMKKASSYYYDKMEKSESMRVEIRSRKARKLIEDTLKIAD 60

Query: 62 SP-TSKTYAF 69
          SP +SKTY F
Sbjct: 61 SPKSSKTYTF 69

[Close]

BLAST of Sed0014020 vs. ExPASy TrEMBL
Match: A0A061EHJ2 (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_019614 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 4.6e-13
Identity = 50/69 (72.46%), Postives = 59/69 (85.51%), Query Frame = 0


Query: 1  MMFDLGRIVVNLKAKILKSLKMKKKAYYYDKMEKSESMRIEIRSRKAQKLIQNTLKFADS 60
          MM   GR+VV+LK+K L+ LKMKK A YYDK+EKSESMR+EIRSRKA+KLI+ T+K ADS
Sbjct: 5  MMMGFGRLVVSLKSK-LRYLKMKKPA-YYDKIEKSESMRVEIRSRKARKLIEETMKIADS 64

Query: 61 P-TSKTYAF 69
          P TSKTYAF
Sbjct: 65 PRTSKTYAF 71

[Close]

BLAST of Sed0014020 vs. ExPASy TrEMBL
Match: A0A6A2YYL4 (Tryptophan synthase beta type 2 OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00111105pilonHSYRG00214 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 3.0e-12
Identity = 47/68 (69.12%), Postives = 58/68 (85.29%), Query Frame = 0


Query: 1  MMFDLGRIVVNLKAKILKSLKMKKKAYYYDKMEKSESMRIEIRSRKAQKLIQNTLKFADS 60
          +M  +GR+VV+LK+K L+SLK  KK   YDK+EKSESMR+EIRSRKA+KLI+ TLK ADS
Sbjct: 2  VMMGIGRMVVSLKSK-LRSLKTMKKD--YDKVEKSESMRVEIRSRKARKLIERTLKIADS 61

Query: 61 PTSKTYAF 69
          PTSKT+AF
Sbjct: 62 PTSKTFAF 66

[Close]

BLAST of Sed0014020 vs. ExPASy TrEMBL
Match: A0A1R3KFJ7 (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_08509 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 3.0e-12
Identity = 48/69 (69.57%), Postives = 56/69 (81.16%), Query Frame = 0


Query: 1  MMFDLGRIVVNLKAKILKSLKMKKKAYYYDKMEKSESMRIEIRSRKAQKLIQNTLKFADS 60
          MM  LGR+V +LK+K L+SLK KK   YYDK+EKSESMR+EIRSRKA+KLI  T+K ADS
Sbjct: 2  MMGGLGRLVGSLKSK-LRSLKTKKPTSYYDKIEKSESMRVEIRSRKARKLIDKTMKIADS 61

Query: 61 P-TSKTYAF 69
          P  SKTYAF
Sbjct: 62 PRASKTYAF 69

[Close]

BLAST of Sed0014020 vs. ExPASy TrEMBL
Match: A0A444X982 (Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_B10g105937 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 3.0e-12
Identity = 45/73 (61.64%), Postives = 57/73 (78.08%), Query Frame = 0


Query: 2  MFDLGRIVVNLKAKILKSL------KMKKKAYYYDKMEKSESMRIEIRSRKAQKLIQNTL 61
          M  L R+V+ LK+KI++ L         K +YYYDK+EKSESMR+EIRSRKA+KLI++TL
Sbjct: 1  MMGLRRLVLTLKSKIIRCLMKNNNNNNNKHSYYYDKVEKSESMRMEIRSRKARKLIEDTL 60

Query: 62 KFADSPTSKTYAF 69
          K ADSPTSKT+AF
Sbjct: 61 KIADSPTSKTFAF 73

[Close]

BLAST of Sed0014020 vs. TAIR 10
Match: AT3G19660.1 (unknown protein; Has 16 Blast hits to 16 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 40.0 bits (92), Expect = 8.7e-04
Identity = 27/65 (41.54%), Postives = 39/65 (60.00%), Query Frame = 0


Query: 1  MMFDLGRIVVNLKAKILKSLKMKKKAYYYDKMEKSESMRIEIRSRKAQKLIQNTLKFADS 60
          M   L  ++  +K+K+   L+ KKK Y   KM+KS S+R+ IR +K + LI  TLK AD 
Sbjct: 1  MGLQLESLMETIKSKV-SLLRKKKKTYI--KMDKSSSVRVAIRRKKTRDLIDKTLKVADR 60

Query: 61 PTSKT 66
          P  +T
Sbjct: 61 PGKRT 62

The following BLAST results are available for this feature:

BLAST of Sed0014020 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7036740.1	1.2e-15	81.97	hypothetical protein SDJN02_00360, partial [Cucurbita argyrosperma subsp. argyro...	[more]
RYQ78961.1	1.3e-14	77.14	hypothetical protein Ahy_Scaffold8g108431 [Arachis hypogaea] >RYR60310.1 hypothe...	[more]
EOY04331.1	9.6e-13	72.46	Uncharacterized protein TCM_019614 [Theobroma cacao]	[more]
QHO17494.1	2.1e-12	63.01	uncharacterized protein DS421_10g312660 [Arachis hypogaea] >QHO17495.1 uncharact...	[more]
QHN83931.1	6.2e-12	61.64	uncharacterized protein DS421_20g709010 [Arachis hypogaea] >QHN83932.1 uncharact...	[more]

BLAST of Sed0014020 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0014020 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A445DAW0	6.5e-15	77.14	Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_A04g017389 PE=4 SV=1	[more]
A0A061EHJ2	4.6e-13	72.46	Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_019614 PE=4 SV=1	[more]
A0A6A2YYL4	3.0e-12	69.12	Tryptophan synthase beta type 2 OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00111...	[more]
A0A1R3KFJ7	3.0e-12	69.57	Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_08509 PE=4 SV=1	[more]
A0A444X982	3.0e-12	61.64	Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_B10g105937 PE=4 SV=1	[more]

BLAST of Sed0014020 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G19660.1	8.7e-04	41.54	unknown protein; Has 16 Blast hits to 16 proteins in 6 species: Archae - 0; Bact...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34563	BNACNNG33880D PROTEIN	coord: 1..68

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0014020.1	Sed0014020.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071277	cellular response to calcium ion
biological_process	GO:0009704	de-etiolation
biological_process	GO:0090333	regulation of stomatal closure
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity