Sed0014011 (gene) Chayote v1

Overview


Name	Sed0014011
Type	gene
Organism	Sechium edule (Chayote v1)
Description	RING-H2 finger protein ATL16-like
Location	LG06: 643689 .. 651955 (+)
RNA-Seq Expression	Sed0014011
Synteny	Sed0014011

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTGATTACAAAGCTTTAATAAAGACGTCGACTCAATACAAGATAAACGTGAAGGGCAAGACAATTAGACGACATGTTGCTGAAGTACAATCGACGGATAAAGTTGTTGGTCTTGAAATATCAAGATCGTTGTACTTTTCCACCAAACTGTTCATCGGAGTTTCGAACAAAATCCTTTACGTAAATGCGCCGTACGCAGTCGGCTATGATACGAACAGCTATACCCTCCCGGTCCACAAACTTGACGAAGACCTAAAGACCTTCGAAGACTTAATCGAGGACTGGCTGTACTCGCTCTACATCACTGCCTCCGCTTCTGAGCTCATCGCCGCGCATGTCGTTTCGTTGATCCTCCAATACTTTACCCAGGAAAACACGGAACTCGACTTCGATGCCGTGCTCTCTATCCACGGCAGCGAGGAAACCATCTTGGTGCCGATCGACAAGTCGGAAAAGAAGGAAGAAGAAGGTGAGGAGGATGATGATGAGGATGATTTGGGAGATTGCAGCATTTGTTTGGATCAAATATTGAATTGTCAAAACATGGACGCCGTAAGGATCCTTCCATGCGGACATGCCTATCATAAATCATGTATCCTTACTTGGCATACCTATTCCAAATCTTGTCCTTTGTGCAGAATCTATTTACCAATTCTGCCCTAGCATTCTCATTATTCAAGTCTTATTAATTTCTATTTCATATTTCACTTTATATTATTTTTCTTACAAATTTATTTATCCTTTTTATTATTTATTTAATACTAGGTTTTGCACCATCAAGCTTTTACGTATTAACTTGCGTGGCAAGAATTGAATCTATATTAGTTTTAATTTATTTCATTTGTGTACATTTTCTAATGTTTTATTGTTTGATGAAAATTTAGTTAATACTATGATCATGAGTTCTAGTATCTTTTTATTAGGGTTTGTAGTCTCCTTCCTCCAACTTGTACTAAAAAAACTAAGACTGTGAGGTATAATTGGAAGAATTTCTGTACATGATTTTCATTCACCAACTACATATATTATTTGGGAAAGATTCAACACCCAAGCCATTTTTTTATATCCAATATGGTTAACATATCTCTTTTCCTTTCCTCAATACCTGTTCTTAAAATTTATTAAAAAATAATTAAAGCCATTAATAACTATTTGGTTTTTAGTTTGGTTGAACCACTATAAATATAACGTGTGCCTTCTCACCAAATAAGTCAGTAGTGCAATGATTTCATTGTCTTGTCTAGTCAGTAGTGCAATGATTTCATTGTCTAGTTATAAATCAATTTAACACGGGCGTCATAGGTTCAGATCGGTATTTGTCCCCTTCTCTAATATATGTACTAAAAAAACATGTGCCTTCACGATCTCCTTTGCTATCTCCATTTTGTTTTTGCTTGTGTCTTTAATATCACTGGTTTGTTTGATTTGGCTCAACAATTGGTATTAGAGTTTTTGTATTTTTTTTTTTTTTTTGGGGTTTTTGAAAAGGAATTAATCGATCTTAATCACTCACATTGATCAACATTTATTTTGTAGCGACAATAATTTAAACGAGATTATCCTAACTTTGTGGAGGTATAACGTGGATGGATTCACCCCCACATGGACGTTGCGAAGGTTGTTACAACAGAAATTCTAAAAATAAAATATTTAGGTACCATTTAGAACCATTGGTAACATTTTTTGTTTTTTATTTTTGAAGTTTAAATTTATTTTTATCAAATTCCCTACAATATGTTCTATTTTATAGTTAATGTAGGTTTAAATTTCATCTTGATATTTTTTTTTACGACAATAAAATAATTGATGTATACTTAAATTTCAAAAAAAAAATAAAAATAAAAATTTAACAGATCCTTAATAATTGTGATAGAGATGAATTGTATAACCACTTTAACAATGTTATTGGTAGGATCCAAACCAACGGTAACAAATTCTGCAAAGCTAATCCATTTCATAATTCTAAACCTTATATAATATAATATATTGTACTAACTTTAATCATATTAATTCTAGATTATATTAAATGTTACCATTTATATCATCTATTTAATTTCCTCAATTCATACTCTAATGTAAAATCTACAAATTTGAATGATATTATGTTATACACCTATTTGGATTGGATTAATAAAACAAATTCATCATTGTCATCCAAAACCTAATTCTTGTATCGCTGTATTTAATCTAATAATTAATAGATTATATGATTGAATTCCCCACGAAATGAAAAAAAAATCATCATTAAATAATTTAATCATTTAATTTTATAATAATTTAATCATTTTTTTATAAAATTAAATTATTAAAACTTTAGCTCAAATGTTATTTTACCGCTTTGTATCAATCTATATAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATTAAAAGCTTATGGGAATATTTTTAAAAAGAAAATTCAATTTGGCCGGTTACTTGCAAACATCAAAAGCATATAGTATTTATTTTTTTTTTGGAATTTGTTTCTTAAAAGATTCCACTAAAGTTGATTTACCATTCTAATATCGAATGAGTTAATGATTGAATGGTTTCATTGTTTGGTTATAAACCAATTCAACACCAGCTCACAAATTTGATGTACTAAAAAAAAAAAAAAAAAAATCTATAGCCAAATTATTTTTATATGGAGATCTATTAAAGTAAAACTTCTTTTCTAAAATTTAAATGGAGAATAGATGACTTATTTATTAACATGTAATTATGATCGAATGGGTGAGTGACGCAATGATTTCATTTTTTGTTGTACATCAGTTCAACATCAGCGTCACAGGTTCAAGCCCGATAATCGGTATTTGTCCCCTCTCCTCCGATATGTACTGTCGGGTTGTGAATCAACACACTCAAAATTATATATAAGAAGAATGATGACGTGGCTTGTTCAGGACTATGAGGGAGTTTGTTGTGGCGAAGTAAATCTAAACTAAGTAAATTAAAGATAAATCGAACTGATAAAATACATCGGAAGGGAATAAGATAATTAGGAGAGTTTCGCTTCAGCGAAACTATTTACAACAAAGAAGCAACAACCGTTAGCTTTCTTCTTTCACTCTCTCGAGTCTTAAAGTTTGGCTCTCTCGAACACAAACACTGCTAAGACGAAGCGACACAATATTAGGCGAACCTTATCTCTAAGCATTCAATTTAGATGCAATTAAACTCATCTCTAAGTAAACTTTGCGAACCTAATGTTATACATGCAAGATCACTCTATTTCTATTCTCTCGAAGTGAAATAAAGACATACACATAGTGGATCAAACGGAGTGCATTTCGAATTAACACAACATGCATAAAAATAGTTTATCATCTCACTAAAGCTTCGCTTAGGCGAAATACTTCTATTTGCCCATTTCCTTCCAATGATAGATTTAGCTGCTCATGTCGATAAATAAAAGCAAAGCGAAGTAAAAGCAATAGAAAATCTTCATTAAAAGCAACAAGAACAAGGTTCATCGAAACTACACTAAAACAGAAGTAGAAGAAAACAATAAAACAGAACTACGGCTAAGCTACACAAAAACTAAGGAAATGGTGATCGAAAATGCTCGACGGAATGGTGATCGACCCTAGATGGGTGACCGACCCTAAATTGGGTGATATTTTGCTCTGAAGGTGAACATTTCTATTTATACTTCAGCTTCAAGCGACAAAGCCTGCTACACGATCCTGACAATGTTGGACTGCTCTGCGATCGCATTTCAGATGAAGGTCTGCTTTATCTAACACTTCTGCTCCACGATCCACATTGTCGGTTGTTAGAGCATCTTGGCTTCGCTAAGTTTACAACATCTTCTTTCGTTGGTAGCTTTGCTGTGGCGAAGCAATTGGTAACTTCTTTAAGCTCCGCTGCTATGTTGAATCTTTTCAAGGCGTGCTTGGTTGGGCTGACATTCGCTTTGGCGAACACCTTGTTGTTGGAAGTTCGCTTCGCTCCATCATGAATGCTGCAGACAAACTAGAAAGTATTAATTCTTTTTACAACATAAAACTTGGCACACATTCAAGCATATTTCGCTGCAGCGAACCCAGAATATGCATCCTTATCAGAAAACTAAAATGTTTCGTTTAAGCGAAAGTTAAGCATGATGGGGAGAAATTCAATATTAACAAATTCTTATAAAAATATAATCTTTTAAACTACTTTTTTTTTTTTTTGAGAAACCACAATGCATTCAACAACCACCCACAACCAAACAATCATTCTCCAAAGCGGAGCCAATGTCAGGGGGGAGAATCCCCCTAAAAAAAAAGACTCAGCCTCGACATCGAGACAATGTGCCTTCCAACAAGAACCAACCACAAAATCTATCTTGGCTAACAAGTCAGCTACCTTATTACAAAGTCTATTACAATAAGAAGCTTGCTTAATACCAAGAAAAGTAATAAGATGTCGGATATCAGCAACAATGTTACCAAATTCAGAAAGATCTGAGGATCCATTAACGACTGCATTGACCACTTCTAAAGCATCGGACTCCACCAGAATCGGAGGGAGAAAAGAAATATTAACATCCCTCAAATGCTTCAACCCTTCTCTCATTGCAATCCCCTCGAGAAATTTTACCGACTGGCCCATAAAGTTTGAATTCCTACCCATAAGCTTGGGACTCCCCTTCCAATCACGAACCACCCACCCGATGCCTCCCCTACCCGAACCAGGATCTACCGACGCATCCACATTCAACTTCCACATACCCATCGAGGGAGTCTTCCACTTAGGCTCCACAATGGGCCCATTGGAGATATTAGGAGAACCACCTGCACAAAGGAAAATATGAGCACTAATAGCCTTATCAATAATTTTAATGAGATTATGGAACTTCAAGTCCATCTTGCCATTGATCCCTTGGTTCCTGAAGTTCCATAAGCTCCAAATAATAATAATACATTTAAACCTTTCATTATTAGGAATTTTGTCACACAACCTTTTCCAAAAATCCACCCCACAATCAAGGCGCAAAAAATCCCGACTGAAATCCGAGAACCACGGGAAAATATGCTTCCAAGCACGAATGACCACTTTACAATCCTTAATAATATGCATATTAGACTCTCATGCTTTCCAACACAACATGCACCTCACATTAACATCCACCCTCCTTTGAAAAATATTGCATTTAGACGGGATAACGTTAGCAAGCACACTCCAGGCCCCCACTTTGATCTTGGGAGAAACATCCACCTTCCAAAAACTTTTCCAAATACTTGAAGAGACTTTGGAATTTGAAGAAGACTCTTCTTTGACATTCTTCAACTGAATCCCAACATGGTATGCACTTTTTACCCAAAAAATTCCATTCACATTACAATACCAAATCACCTCATCAGAAACTTCAACCTCACTCAAAGGAATATTACAAATAATAGTGGCATCCTCTTTGCAAAAAAATGTTTTCAATCAAAGCCTCATTCCAAGAATTATTACCTAATATCAAATCAGCCACACTTCTAAACTTCCAGTCATCTTTAACCCCAATCGCAAAAGTATTTCCCATTCTATTGAGCCAAGGATCCTTGCCAATAGAAATCCTTTTCCCATTTCCCACCTTCCACCTATAACCCTTCTGGAAAAGATCTCGACCCCACAGAATACTTCTCCATGCAAGAGAAGGATTATTGCCTAGATGGGCAGTAAGAAAATCACCATTAACAAAATACTTCCCTCTCAATAATCTGCTCAACAGGCTGTTTGAGTTCCTTAAAATACTCCAACTGTGCTTAGCAAGCAGAGCTTGATTAAAGACATTAAAATTCCTAAAACCCATCCCACCCGCCTCTTTACTAACACATTTTTTTCCAACTCATCCAATGCTTTCATATGCCACAAGTCCTCCCCCCACCAAAATTTAGCACACAAACTTTGAAGATCCTCATTAAATGACTTGGTCAAACGAAAACAACTCATAATGTAAGTTGGAATCGCCTGACCAACTGCCTTTATCATCACTTCTTTCCCGCCTCTCGAGAGCATTTTGTCTTTCCACCCTTGAAGACATTTTTCCAATCTACCTCTAATAGACTGGAATAGGGCCTTTTTGTTACTACCATTTTGGGAGGGCATACCAAGATGAACCCCGAGATTATCATTCACTTTGACACCTAACAGTTGCTAAGAACAGTTTGATCACAACCCTTAATATTGCCACTAAACAAAATGGCAGATTTCTTGAAGTTGACCACTTGGCCTGAGGTTCTTTCATAACAATTAAGAATATCTTTAATTCTCAAACAATCCTCTATCCTGGCCCTGAAAAACTGCAAACTATCATCAGCAAAAAATAAATGAGAAATAGCAGGACAATGATTATTTACTTTAAAGCTCTTGAAAGAGTTTGATTCCTCCTCCTTCTTGAGGAGCATAGATAACCCCTCAACACAAATCAAGAACAAATAAGGGGAAAGAGGATCCCCTTGCCTTAAACCTCTTTTTGGACAAATGTCCCCAAACGGGAAACCATTCACTAACACTGCATATTTAACTGAGGAAATACATCTACGGATAAGATTAATCCATTTATGACTGAACCCCAACTTATCCATCATCAGAAGAACAAATCTCCACTCAACACGATCATACGCCTTGCTCATATCAAGTTTCAATGTCGCCCAGCCAACCTTACCGGACTTCCTTTTATTAATAGAATGGATACATTCAAAGCCCAAAACAACGTTGTCCGTAATCATCCTCCCAGGAACAAAAGCAGCTTGGTTAGGAGAAATAATTTTATCAAGCACCACTTTCAACCTATTAGTGATAACCTTAGCAATGAGTTTGTAAACCGTGTTACACAAACTAATAGGGCGAAAGTCCTCCATTCTACTGACACTTTTGACTTTAGGGATTAAAGCAATTAAGGTGTCATTCATAGAATCTAACATCTTCCCGTCATTAAGCACCCCTAAACAAAATCTAACCACATCCTCTCCAATAACGTCCCAGTAAGCACGAAAAAACATCCCATTTGACCCATCCGGCCCCAGGGCTTTAGAGGGGTTCAAATTTTTAAGAGCCAACTCAATATCAGATCTCGAAAAAGGCTCATCCAAGAATAATATATCCCTATCAGCAAGCCTTCTCTCAACCCCAACTAAAATCCGCTCCACCGCCTCATCATCCATACCATGAGAAGAAAAAAATATTATTAAAATAATCTCTAGCAACTTTAACAATCCCACTCTCATCCACATGCCAGATCCCATTGGAATCCTTAATCCTATCAATACGATTCATTTTCTTTCGTTGGGAGGCTCTCGAATGGAACCACTTTGTATTACGATCCCCCCATTTAAGCCAATCCTCTCTCGCTCTTTGCTTCCAGAAAATCTCCTCCTCCTCCAACAACTTCTCTATATCATTCTCAATTTTTAGAATTTGACCAGATCTCGAACCAGAAGCCTTAATGATTAAAGTGGTAAGAGCTTTTTCTTGAACCAGGTTCGAATGTTGGATGGAGGAGAGAAGACGTGCAGAGGCCGGCATCATTTCCGGTCGAGAGGCGGCGAAATTGCTCTGCTAACGGGTCGCCGGAAATTGTATTGGAAGATGGCGAGAGAAATATGGAAGAAAGTCAGAAAATGCAGGTGGTTTCGTCTGAATTTGGGAAAAGGTCAAGTACAGAGGTTGGAGATGATGGGATGGGTTGCTTGGTGAACGTTGTGAAGGAAAAAGGAGTGGGACATGTGGCAGATGCTAGCTGGTGCAAGATGGAAAATAAAGGGAAAGGAAAAATATCAGATCTAGGAGAAGAAAAACTCCTTTTTGGACCATTTGAAATTAAAATTTCACATAATAATAGCCATTTGAAGGGTGTGGGAAATGGGCCTGTGAGTGGGCTTAGGAAAGGTATTATAATTAATGAAAATGTGGGCTTGAAAAATTAAACTAAATGTCATTTATCTGTTGGACCTCTTGAAGTTAAAATTGAGACTTTTCAAGCAGTTGTTAAAATGGACAGTAAGAATGTTCAATCTAAGGTGGATTGCATGGAAGTTGGGCTAGGAAGAAAATTGGATAATTTAAAGTTAATTATGCCATTTAAGGAAGTGGCATCGATAGTGCTTCAAAAAAAGCATATAGATAGCAGTCCCGAGAAGAATATTGGTGTAGGAGAGGCTAAAAAGTCCATGAAATCTGGGTGGGAGGAAAAGGTGGGCAATTTGGAGGTTGTGTTGGAAAGAAATTGA

mRNA sequence

ATGGGTGATTACAAAGCTTTAATAAAGACGTCGACTCAATACAAGATAAACGTGAAGGGCAAGACAATTAGACGACATGTTGCTGAAGTACAATCGACGGATAAAGTTGTTGGTCTTGAAATATCAAGATCGTTGTACTTTTCCACCAAACTGTTCATCGGAGTTTCGAACAAAATCCTTTACGTAAATGCGCCGTACGCAGTCGGCTATGATACGAACAGCTATACCCTCCCGGTCCACAAACTTGACGAAGACCTAAAGACCTTCGAAGACTTAATCGAGGACTGGCTGTACTCGCTCTACATCACTGCCTCCGCTTCTGAGCTCATCGCCGCGCATGTCGTTTCGTTGATCCTCCAATACTTTACCCAGGAAAACACGGAACTCGACTTCGATGCCGTGCTCTCTATCCACGGCAGCGAGGAAACCATCTTGGTGCCGATCGACAAGTCGGAAAAGAAGGAAGAAGAAGGTGAGGAGGATGATGATGAGGATGATTTGGGAGATTGCAGCATTTGTTTGGATCAAATATTGAATTGTCAAAACATGGACGCCGTAAGGATCCTTCCATGCGGACATGCCTATCATAAATCATGTTCGAATGTTGGATGGAGGAGAGAAGACGTGCAGAGGCCGGCATCATTTCCGGTCGAGAGGCGGCGAAATTGCTCTGCTAACGGGTCGCCGGAAATTGTATTGGAAGATGGCGAGAGAAATATGGAAGAAAGTCAGAAAATGCAGGTGGTTTCGTCTGAATTTGGGAAAAGGTCAAGTACAGAGGTTGGAGATGATGGGATGGGTTGCTTGGTGAACGTTGTGAAGGAAAAAGGAGTGGGACATGTGGCAGATGCTAGCTGGTGCAAGATGGAAAATAAAGGGAAAGGAAAAATATCAGATCTAGGAGAAGAAAAACTCCTTTTTGGACCATTTGAAATTAAAATTTCACATAATAATAGCCATTTGAAGGGTGTGGGAAATGGGCCTGTGAGTGGGCTTAGGAAAGTTGTTAAAATGGACAGTAAGAATGTTCAATCTAAGGTGGATTGCATGGAAGTTGGGCTAGGAAGAAAATTGGATAATTTAAAGTTAATTATGCCATTTAAGGAAGTGGCATCGATAGTGCTTCAAAAAAAGCATATAGATAGCAGTCCCGAGAAGAATATTGGTGTAGGAGAGGCTAAAAAGTCCATGAAATCTGGGTGGGAGGAAAAGGTGGGCAATTTGGAGGTTGTGTTGGAAAGAAATTGA

Coding sequence (CDS)

ATGGGTGATTACAAAGCTTTAATAAAGACGTCGACTCAATACAAGATAAACGTGAAGGGCAAGACAATTAGACGACATGTTGCTGAAGTACAATCGACGGATAAAGTTGTTGGTCTTGAAATATCAAGATCGTTGTACTTTTCCACCAAACTGTTCATCGGAGTTTCGAACAAAATCCTTTACGTAAATGCGCCGTACGCAGTCGGCTATGATACGAACAGCTATACCCTCCCGGTCCACAAACTTGACGAAGACCTAAAGACCTTCGAAGACTTAATCGAGGACTGGCTGTACTCGCTCTACATCACTGCCTCCGCTTCTGAGCTCATCGCCGCGCATGTCGTTTCGTTGATCCTCCAATACTTTACCCAGGAAAACACGGAACTCGACTTCGATGCCGTGCTCTCTATCCACGGCAGCGAGGAAACCATCTTGGTGCCGATCGACAAGTCGGAAAAGAAGGAAGAAGAAGGTGAGGAGGATGATGATGAGGATGATTTGGGAGATTGCAGCATTTGTTTGGATCAAATATTGAATTGTCAAAACATGGACGCCGTAAGGATCCTTCCATGCGGACATGCCTATCATAAATCATGTTCGAATGTTGGATGGAGGAGAGAAGACGTGCAGAGGCCGGCATCATTTCCGGTCGAGAGGCGGCGAAATTGCTCTGCTAACGGGTCGCCGGAAATTGTATTGGAAGATGGCGAGAGAAATATGGAAGAAAGTCAGAAAATGCAGGTGGTTTCGTCTGAATTTGGGAAAAGGTCAAGTACAGAGGTTGGAGATGATGGGATGGGTTGCTTGGTGAACGTTGTGAAGGAAAAAGGAGTGGGACATGTGGCAGATGCTAGCTGGTGCAAGATGGAAAATAAAGGGAAAGGAAAAATATCAGATCTAGGAGAAGAAAAACTCCTTTTTGGACCATTTGAAATTAAAATTTCACATAATAATAGCCATTTGAAGGGTGTGGGAAATGGGCCTGTGAGTGGGCTTAGGAAAGTTGTTAAAATGGACAGTAAGAATGTTCAATCTAAGGTGGATTGCATGGAAGTTGGGCTAGGAAGAAAATTGGATAATTTAAAGTTAATTATGCCATTTAAGGAAGTGGCATCGATAGTGCTTCAAAAAAAGCATATAGATAGCAGTCCCGAGAAGAATATTGGTGTAGGAGAGGCTAAAAAGTCCATGAAATCTGGGTGGGAGGAAAAGGTGGGCAATTTGGAGGTTGTGTTGGAAAGAAATTGA

Protein sequence

MGDYKALIKTSTQYKINVKGKTIRRHVAEVQSTDKVVGLEISRSLYFSTKLFIGVSNKILYVNAPYAVGYDTNSYTLPVHKLDEDLKTFEDLIEDWLYSLYITASASELIAAHVVSLILQYFTQENTELDFDAVLSIHGSEETILVPIDKSEKKEEEGEEDDDEDDLGDCSICLDQILNCQNMDAVRILPCGHAYHKSCSNVGWRREDVQRPASFPVERRRNCSANGSPEIVLEDGERNMEESQKMQVVSSEFGKRSSTEVGDDGMGCLVNVVKEKGVGHVADASWCKMENKGKGKISDLGEEKLLFGPFEIKISHNNSHLKGVGNGPVSGLRKVVKMDSKNVQSKVDCMEVGLGRKLDNLKLIMPFKEVASIVLQKKHIDSSPEKNIGVGEAKKSMKSGWEEKVGNLEVVLERN

Homology

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BLAST of Sed0014011 vs. NCBI nr
Match: KAG6571005.1 (E3 ubiquitin-protein ligase RING1-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 65.9 bits (159), Expect = 9.7e-07
Identity = 58/187 (31.02%), Postives = 91/187 (48.66%), Query Frame = 0


Query: 39  LEISRSLYFSTKLFIGVSNKILYVNAPYAVGYDTNSYTLPVHKLDEDLKTFEDLIEDWLY 98
           LE+    Y   +L  G  N+I+   AP  +    + + LP +  + D    +  I D L 
Sbjct: 26  LEVQMRSYI--RLISGDLNQIVLETAP--IPLRNSLFPLPPNARNIDPVFLQIYIADILL 85

Query: 99  SLYITASASELIAAHVVSLILQYFTQENTELDFDAVLSIHGSEETIL-----VP------ 158
           SL I A ASE+I+A + S  LQ   +E+ + +   V  +    E+       VP      
Sbjct: 86  SLNIGAVASEVISAQIASFTLQ-LAEEHNDTNVHVVAVVDNVMESRFWRLQAVPVVQGGS 145

Query: 159 --IDKSEKKEE-------------EGEEDDDEDDLGDCSICLDQILNCQNMDAVRILPCG 200
             +++ E  EE             E EE+++E+DLG+CSICLD+ + C+  + +R  PCG
Sbjct: 146 AAVERREVVEEVAAANGRYRMEKVEAEEEEEEEDLGNCSICLDE-MKCEGSEVIR-TPCG 205

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BLAST of Sed0014011 vs. NCBI nr
Match: XP_023512244.1 (RING-H2 finger protein ATL16-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 64.7 bits (156), Expect = 2.2e-06
Identity = 55/185 (29.73%), Postives = 92/185 (49.73%), Query Frame = 0


Query: 39  LEISRSLYFSTKLFIGVSNKILYVNAPYAVGYDTNSYTLPVHKLDEDLKTFEDLIEDWLY 98
           LE+    Y   +L  G  N+I+   AP  +    + + LP +  + D    +  I D L 
Sbjct: 25  LEVQMRSYI--RLISGDLNQIVLETAP--IPLRNSLFPLPPNARNIDPVFLQIYIADILL 84

Query: 99  SLYITASASELIAAHVVSLILQYFTQENTELDFDAVLSIHGSEETIL-----VPIDKS-- 158
           SL + A ASE+I+A + S  LQ   +E+ + +   V  +    E+       VP+++   
Sbjct: 85  SLNVGAVASEIISAQIASFTLQ-LAEEHNDTNVHVVAVVDNVMESRFWRLQAVPVEQGGS 144

Query: 159 ---EKKE--------------EEGEEDDDEDDLGDCSICLDQILNCQNMDAVRILPCGHA 200
              E++E              E+ E +++E+DLG+CSICLD+ + C+  + +R  PCGH 
Sbjct: 145 AAVERREVVEEVAAANGRYRMEKVEAEEEEEDLGNCSICLDE-MKCEGSEVIR-TPCGHV 202

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BLAST of Sed0014011 vs. NCBI nr
Match: XP_022944063.1 (RING-H2 finger protein ATL16-like [Cucurbita moschata])

HSP 1 Score: 61.6 bits (148), Expect = 1.8e-05
Identity = 55/185 (29.73%), Postives = 87/185 (47.03%), Query Frame = 0


Query: 39  LEISRSLYFSTKLFIGVSNKILYVNAPYAVGYDTNSYTLPVHKLDEDLKTFEDLIEDWLY 98
           LEI    Y   +L  G  N+I+   AP  +    + + LP +  + D    +  I D L 
Sbjct: 25  LEIQMRSYI--RLISGDLNQIVLETAP--IPLRNSLFPLPPNARNIDPVFLQIYIADILL 84

Query: 99  SLYITASASELIAAHVVSLILQYFTQEN-TELDFDAVLS---------------IHGSEE 158
           SL I A ASE+I+A + S  LQ   + N T +   AV+                + G   
Sbjct: 85  SLNIGAVASEVISAQIASFTLQLAEEHNDTNVHVVAVVDNVMESRFWRLQAVPVVQGGSA 144

Query: 159 TI--------LVPIDKSEKKEEEGEEDDDEDDLGDCSICLDQILNCQNMDAVRILPCGHA 200
            +        +   +   + E+   E+++E+DLG+CSICLD+ + C+  + +R  PCGH 
Sbjct: 145 AVERREVVEEVAAANGRYRMEKVEAEEEEEEDLGNCSICLDE-MKCEGSEVIR-TPCGHV 203

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BLAST of Sed0014011 vs. NCBI nr
Match: XP_022985641.1 (RING-H2 finger protein ATL16-like [Cucurbita maxima])

HSP 1 Score: 60.8 bits (146), Expect = 3.1e-05
Identity = 55/186 (29.57%), Postives = 88/186 (47.31%), Query Frame = 0


Query: 39  LEISRSLYFSTKLFIGVSNKILYVNAPYAVGYDTNSYTLPVHKLDEDLKTFEDLIEDWLY 98
           LE+    Y   +L  G  N+I+   AP  +    + + LP +  + D    +  I + L 
Sbjct: 26  LEVQMRSYI--RLISGDLNQIVLETAP--IPLRNSLFPLPPNARNIDPVFLQIYIAEILL 85

Query: 99  SLYITASASELIAAHVVSLILQYFTQENTELDFDAVLSIHGSEETIL-----VPIDKSEK 158
           SL I A ASE+IAA + S  LQ   +E+ + +   V  +    E+       VP+ +  +
Sbjct: 86  SLNIGAVASEVIAAQIASFTLQ-LAEEHNDTNVHVVAVVDNVVESRFWRLQAVPVMQGGR 145

Query: 159 KEEE--------------------GEEDDDEDDLGDCSICLDQILNCQNMDAVRILPCGH 200
             EE                     E++++E DLG+CSICLD+ + C+  + +R  PCGH
Sbjct: 146 AAEERREVVEEVAAANGRYRMEKVEEKEEEEVDLGNCSICLDE-MKCEGSEVIR-TPCGH 204

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BLAST of Sed0014011 vs. NCBI nr
Match: XP_016899530.1 (PREDICTED: E3 ubiquitin-protein ligase RNF181-like [Cucumis melo] >KAA0035774.1 E3 ubiquitin-protein ligase RNF181-like protein [Cucumis melo var. makuwa] >TYK29842.1 E3 ubiquitin-protein ligase RNF181-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 57.4 bits (137), Expect = 3.4e-04
Identity = 46/129 (35.66%), Postives = 68/129 (52.71%), Query Frame = 0


Query: 93  IEDWLYSLYITASASELIAAHVVSLILQYFTQEN-------TELDFDAVLSIH------- 152
           I  +L SL I  +AS+ +A  + S ILQ   +          E+DF  V+ +        
Sbjct: 75  ITQFLSSLNIRPAASQSMARQIASHILQMPDRNGDRNFHIIAEVDFIRVIWLELEEQSMG 134

Query: 153 -GSEETILV----PIDKSEKKEEEGE---EDDDEDDLGDCSICLDQILNCQNMDAVRILP 200
            G+EET++     P  K    +  GE    ++  +DLGDCSICLD+ L+C+  + +RI P
Sbjct: 135 AGAEETVVFDEAPPALKRGVGKARGERLKSEEKVEDLGDCSICLDE-LSCEKREVIRI-P 194

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BLAST of Sed0014011 vs. ExPASy TrEMBL
Match: A0A6J1FXN0 (RING-H2 finger protein ATL16-like OS=Cucurbita moschata OX=3662 GN=LOC111448613 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 8.8e-06
Identity = 55/185 (29.73%), Postives = 87/185 (47.03%), Query Frame = 0


Query: 39  LEISRSLYFSTKLFIGVSNKILYVNAPYAVGYDTNSYTLPVHKLDEDLKTFEDLIEDWLY 98
           LEI    Y   +L  G  N+I+   AP  +    + + LP +  + D    +  I D L 
Sbjct: 25  LEIQMRSYI--RLISGDLNQIVLETAP--IPLRNSLFPLPPNARNIDPVFLQIYIADILL 84

Query: 99  SLYITASASELIAAHVVSLILQYFTQEN-TELDFDAVLS---------------IHGSEE 158
           SL I A ASE+I+A + S  LQ   + N T +   AV+                + G   
Sbjct: 85  SLNIGAVASEVISAQIASFTLQLAEEHNDTNVHVVAVVDNVMESRFWRLQAVPVVQGGSA 144

Query: 159 TI--------LVPIDKSEKKEEEGEEDDDEDDLGDCSICLDQILNCQNMDAVRILPCGHA 200
            +        +   +   + E+   E+++E+DLG+CSICLD+ + C+  + +R  PCGH 
Sbjct: 145 AVERREVVEEVAAANGRYRMEKVEAEEEEEEDLGNCSICLDE-MKCEGSEVIR-TPCGHV 203

[Close]

BLAST of Sed0014011 vs. ExPASy TrEMBL
Match: A0A6J1J8T7 (RING-H2 finger protein ATL16-like OS=Cucurbita maxima OX=3661 GN=LOC111483640 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.5e-05
Identity = 55/186 (29.57%), Postives = 88/186 (47.31%), Query Frame = 0


Query: 39  LEISRSLYFSTKLFIGVSNKILYVNAPYAVGYDTNSYTLPVHKLDEDLKTFEDLIEDWLY 98
           LE+    Y   +L  G  N+I+   AP  +    + + LP +  + D    +  I + L 
Sbjct: 26  LEVQMRSYI--RLISGDLNQIVLETAP--IPLRNSLFPLPPNARNIDPVFLQIYIAEILL 85

Query: 99  SLYITASASELIAAHVVSLILQYFTQENTELDFDAVLSIHGSEETIL-----VPIDKSEK 158
           SL I A ASE+IAA + S  LQ   +E+ + +   V  +    E+       VP+ +  +
Sbjct: 86  SLNIGAVASEVIAAQIASFTLQ-LAEEHNDTNVHVVAVVDNVVESRFWRLQAVPVMQGGR 145

Query: 159 KEEE--------------------GEEDDDEDDLGDCSICLDQILNCQNMDAVRILPCGH 200
             EE                     E++++E DLG+CSICLD+ + C+  + +R  PCGH
Sbjct: 146 AAEERREVVEEVAAANGRYRMEKVEEKEEEEVDLGNCSICLDE-MKCEGSEVIR-TPCGH 204

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BLAST of Sed0014011 vs. ExPASy TrEMBL
Match: A0A5D3E1S5 (E3 ubiquitin-protein ligase RNF181-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold208G00800 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.7e-04
Identity = 46/129 (35.66%), Postives = 68/129 (52.71%), Query Frame = 0


Query: 93  IEDWLYSLYITASASELIAAHVVSLILQYFTQEN-------TELDFDAVLSIH------- 152
           I  +L SL I  +AS+ +A  + S ILQ   +          E+DF  V+ +        
Sbjct: 75  ITQFLSSLNIRPAASQSMARQIASHILQMPDRNGDRNFHIIAEVDFIRVIWLELEEQSMG 134

Query: 153 -GSEETILV----PIDKSEKKEEEGE---EDDDEDDLGDCSICLDQILNCQNMDAVRILP 200
            G+EET++     P  K    +  GE    ++  +DLGDCSICLD+ L+C+  + +RI P
Sbjct: 135 AGAEETVVFDEAPPALKRGVGKARGERLKSEEKVEDLGDCSICLDE-LSCEKREVIRI-P 194

[Close]

BLAST of Sed0014011 vs. ExPASy TrEMBL
Match: A0A1S4DUZ4 (E3 ubiquitin-protein ligase RNF181-like OS=Cucumis melo OX=3656 GN=LOC107990564 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.7e-04
Identity = 46/129 (35.66%), Postives = 68/129 (52.71%), Query Frame = 0


Query: 93  IEDWLYSLYITASASELIAAHVVSLILQYFTQEN-------TELDFDAVLSIH------- 152
           I  +L SL I  +AS+ +A  + S ILQ   +          E+DF  V+ +        
Sbjct: 75  ITQFLSSLNIRPAASQSMARQIASHILQMPDRNGDRNFHIIAEVDFIRVIWLELEEQSMG 134

Query: 153 -GSEETILV----PIDKSEKKEEEGE---EDDDEDDLGDCSICLDQILNCQNMDAVRILP 200
            G+EET++     P  K    +  GE    ++  +DLGDCSICLD+ L+C+  + +RI P
Sbjct: 135 AGAEETVVFDEAPPALKRGVGKARGERLKSEEKVEDLGDCSICLDE-LSCEKREVIRI-P 194

[Close]

BLAST of Sed0014011 vs. ExPASy TrEMBL
Match: A0A0A0LW68 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G573640 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 3.7e-04
Identity = 52/169 (30.77%), Postives = 76/169 (44.97%), Query Frame = 0


Query: 39  LEISRSLYFSTKLFIGVSNKILYVNAPYAVGYDTNSYTLP---VHKLDEDLKTFEDLIED 98
           LEI R +  S  L      +I++   P  + YD N + L     H   E   +F   +  
Sbjct: 27  LEIQRRI--SHSLMFNFPPQIIHQTLPILLDYDNNFFPLHFNFFHSYGEP-SSFTFYVAQ 86

Query: 99  WLYSLYITASASELIAAHVVSLILQYFTQENTELDFDAVLSIHGSEETILVPIDKSEKKE 158
              SL I + ASE +A ++  LI      EN+   F   + I     T + P+  S ++ 
Sbjct: 87  LFSSLNINSIASEAMARNIF-LIANQVANENSNASFHIAVIIDFINFTWMCPLSFSTRQL 146

Query: 159 EEGEEDDDE-----DDLGDCSICLDQILNCQNMDAVRILPCGHAYHKSC 200
              E    E     +DLGDCSICLD+ L+  N + V  + CGH YH+ C
Sbjct: 147 TGNEVSMVEQKKIGNDLGDCSICLDE-LSPSNREVVLKISCGHVYHELC 190

The following BLAST results are available for this feature:

BLAST of Sed0014011 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6571005.1	9.7e-07	31.02	E3 ubiquitin-protein ligase RING1-like protein, partial [Cucurbita argyrosperma ...	[more]
XP_023512244.1	2.2e-06	29.73	RING-H2 finger protein ATL16-like [Cucurbita pepo subsp. pepo]	[more]
XP_022944063.1	1.8e-05	29.73	RING-H2 finger protein ATL16-like [Cucurbita moschata]	[more]
XP_022985641.1	3.1e-05	29.57	RING-H2 finger protein ATL16-like [Cucurbita maxima]	[more]
XP_016899530.1	3.4e-04	35.66	PREDICTED: E3 ubiquitin-protein ligase RNF181-like [Cucumis melo] >KAA0035774.1 ...	[more]

BLAST of Sed0014011 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0014011 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FXN0	8.8e-06	29.73	RING-H2 finger protein ATL16-like OS=Cucurbita moschata OX=3662 GN=LOC111448613 ...	[more]
A0A6J1J8T7	1.5e-05	29.57	RING-H2 finger protein ATL16-like OS=Cucurbita maxima OX=3661 GN=LOC111483640 PE...	[more]
A0A5D3E1S5	1.7e-04	35.66	E3 ubiquitin-protein ligase RNF181-like protein OS=Cucumis melo var. makuwa OX=1...	[more]
A0A1S4DUZ4	1.7e-04	35.66	E3 ubiquitin-protein ligase RNF181-like OS=Cucumis melo OX=3656 GN=LOC107990564 ...	[more]
A0A0A0LW68	3.7e-04	30.77	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G573640 P...	[more]

BLAST of Sed0014011 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 170..231 e-value: 0.0023 score: 27.2
IPR001841	Zinc finger, RING-type	PFAM	PF17123	zf-RING_11	coord: 169..199 e-value: 2.3E-9 score: 36.8
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 170..219 score: 8.579733
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 138..222 e-value: 1.5E-8 score: 36.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 147..166
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 169..199

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0014011.1	Sed0014011.1	mRNA