Sed0014008 (gene) Chayote v1

Overview


Name	Sed0014008
Type	gene
Organism	Sechium edule (Chayote v1)
Description	selenoprotein F-like
Location	LG07: 830772 .. 836753 (-)
RNA-Seq Expression	Sed0014008
Synteny	Sed0014008

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTCGGAGTAAATTCTTTTTTTAATTATATTTCTCCAAATATGCAGTAAATGTAATTGGTGTTTTCGAGTGAGTTTTCAGATCGTCTCTAGACTTGGATTCTTTACCCACTCGACGGTGGTCGCAAAGATGCAGCTTCTCACCGGTGCGAAGAAGCCGGCTACGGCGGCGATGGCGACAGCGGCGGCGATCATTTTCATGGCGTCAATGCCGTTGGCATGGTCAAAGGAGCAACTCAGTTCGAGGCAATGTGAGGATCTAGGTTTCACAGGCCTTGCTCTCTGTTCCGATTGCCACACTTTAGCTGAATATGTCAAAGATCAAGGTGAGGCGTTTGATTCACAGGCTCACACCGTTTTTCTATACTCATTCTTCATTCCGATTTGAATGTATAGCTTCATTACTGCGTTTCTTCCATTTTCGTGAAATCGTAGCACCTTAATCCAATTTTTTCGTTTGTTTTCTCAATTCTCAGTGTTTCTTTTGTTTTTTACGTTTGATTTTCGATTTCGATTGTGGATTTCTTTTGCTTGATTTGGATTTGAGATTTCCAGTTTACTTTGTCGTAATCTGTTGTCTTAAGAGTTGGTTTCAATTTATGATATCTTCGACTTCAATCAATTTTCTTAGTTATTTTGGATAGATTTTTTTTATGTTTGTTTTTTATTTCGTTAGAAGATGCGGTAGTGAGGAGTTGAGAGATCTGATAGTTTCTTAGAGAAGAAGATTGTTCCTGAAATTCTGATGTAATGAGTCCCGAACTGGCGGCATAGTGGTTGAAAACTTGGGCATTAAAGGTATGCTCCCCTCAAGGTCTCAGGTTCGAGACTCACCTATGATATTACTTGTTCAATATCTCTCGTTGCCTGGCCTAGGGATGGGCATGATTACTTTAAAAAAAAAAAAAAAAAAAAAAAATTTGATCTCTATGTTATAAGACTGTTTGCAGTGATCAAATTAGGGTGAGAAAAAAGTTCTCAACTCTTGTAAGTGATTTTTTTAATTATGGTTTCCATATTTCTGATGAGTGATTTGAATGCAATTTGTGATTGTTAGTGCTAGCCTTGGTGAATCATTTTCTGAGAAAGGCACTCTAGATTCCTACACCCCCTCCTCTTCTCCCAATCACAGTTCTTAACTATAGTTTTAGAAACAATAGCAGTAACCTGTTTTTCAGAATAGCACAAGAATGTCTCTAAGGGGTGGTGCGGTGGATGAAAGCTTGGGCTTTCAAGGTGTGCTACCCTCGAAGTCTCAGGTTCAAGACTCACTTGTGATATTAATTTGTAGACATCTCCTATGTTGTCATTCCTTTCATGTCTCCTAGTGCCTGACCTAGGGAAGAACGTGGTTACCTTGGATCTAGTGTAGTGAAGCGAATATATGTATATTCTGCAGAAATAAGAAAATGATAAGGCAGTTGGATGTATGAAGATCTTTGTACATGCCTCCTAGGATTATACCTCCCCACCACCTCCCCTAGTTTCATGAGCTTCAATGATTAGGTTGCGAGATGTTGAGTTAAGATAACCTATTGCCTTTTAGCATCCATAATTAAAGAACGTGCCAATTTATAACTGAGTTCTGCAGAAAAACATAGTAAAAAATTTGTAATACCAAATGGGAATTCGAGCAGCACTGGATTTGTGAATGAAACGTAATGACTTTAAACTGTCTTTATCCAAAATTCAAAAGAAGAAAGTAACTAATAGTTTGCAGAATTTGCAATTAACTCATGTCAGTTTATGTTGATATGGCTTGTATTATTTTAGCGCTTTACCTTTCAGATTTCTATAAGCCTATCTTTGTTCTCGGTCCTAGATTAGTCTACTCTTTGTTTTAACTTTTGAGCTCTGTATCCTTCTCAGCTTTTAGCTTTTATTTTTCTCTATTGGAGGTTATTTCTCTATTGCTTCCTCATTTGGCAGTTGTATCTGAAGCTACGGCTTCTTTTCATTTTCTTAATGATAATTTAGTTTGTTGTTTAAAAAAAATGTAATGGAACCAGTTTTGAAGTGCATTGTTTTTAAATTACATTGCTGTCCTCGTTTACAATTTTCTATTGCAGAATTAGTGTCAGACTGTTTGAAGTGTTGCACGGAGGATTCCGATGATGCCACGAGTAAGGTATGCAAAATGTTTTTATGAAAGGAATATCTTCGAATTTGCTCTTAATAGTGGAGGTAAAGATTTTTTTAAAGACAGGTATATTAATAATATAAATAGAAAAAAATTATAATAGATGCATGATATTTTTTTTAACAACCATGATATTAATAATCAAATTGTATAACACCAGATCAACTTTCATTTCAAAATCAAATATAACCCAATGTTTTACAGTTTAAGTATGTATTTTTTAAATGAAATCTTCATTTTGTCCGTGTAATTAATTTTTTAGCAGTAATAAGTGAAATTTCTATTTTTTAGGCTGGTGAATGTGTGATAATCGGTGTAAGAGGGGAAATTAATTTTGAATGTGGATTAAAGATTCACTCTGAGCAGTCTTACTTTTACAATCATATGTGAAAAGAACCACTCATCCTTTCACTTTGATTTTGGTATTCCCAACTATAGCATCGACAATAACTATGTATTGCTATTTTACCTAATCTTGTCACGTTTTTAGCATTTCGAATTCTAATATTTTACACTAAATGATGTGTTTTTACGTAAAACATTAGAGTCTGAAATGCTACAAATGTAAAATATCAATACATTGCATTGTCATTGACGGTGCTATAGTTGGGATACTAAGATCAAGGTAAAAGGATGAATGACCGATCTACCGTACAAAATGGAAATTTCACTTATAAATACTAATAAATTAATTATATGGAAATTTCACTTAAATTCATATCTGAACCGTAAACTATTGGGTTATATTTGATATTTGAAATGAAATTTGATCTGGTATTATGAAAATTTAATTGTCAATATCATGGTCGGATAAAAAAATTCTTGCATCTACTATAACTTTTTATTTATTTATTTATACTATTAATAATAGATTGTTTTTAGAAAATCTTTACCTTCGAAGACATTCCTTTCATAAAAAGAGACTCCGAGTTCATTATTTAGTAGGTATGCAAAATGCTTTTTCTTGAATTTTTTTTTTCTTTGAGTACATATCGGGAAGATGCTCTCAAATAAATGAGAGTTAAATACCGATCCAATTCAATCAAACAATGAAACACTATTAGAGAAAGTACGGTATGCAAAATGTTGTAAATGTGTTGATTTATGGAGGCCGAAATTCATCTTACTCATTAACTACTATTCCATGTGAATTATGTATCATGCTTCTAAACTGAACCCTTGTACGTCCCTGTGATAAATGTGTCAATCGAAAACTCGTTAGTTGAAATATTATGTAGGACTAGAAGTTTATGCCTCCATTATAATTATCACAATTGTGATCCTAAATAAGGTTTCAGTTAACCTGGGAAACTAACTCATTTAAATTTTCTTATATCAATGTGTATGGTATCCAATACTAGAGTCTAGAACCTTACAACTCTTTCTCAGAAGTAAATATCAACATAAGTGGACGAAATAATACTCAAAACAATGATAAACTCTTGATACTCAGCAGCAGAATCTTCAGTAATATGAAATAGAAAGAGCATTACAAACCGAATAGTAAATAAACCAAACGACGTCATTCGAGAGCCCTGGTTTCTCTCCTAAGAAGTCCTTAGACTATCTTCCCAAAATAAAGCCTACCTCCATCCTCACCATACTCTCCTTATTTATATCAAGCAAGAATAACCATCCTATTAAGGAATTCTCCTATTTGCCCCTTTTAGAATATTCAAGGGACTTATGGGTCTTATTATTGACAAATATTCCTCAATTATTATCGGACAATTACTTATTTACACAGGCTAACAGTTACCCTTTTCCATCTCATGGGAGGAAATCCTTTTTGTTCCACTTGGCTCTACACCCCCTCGACGGTGTTACAGTGATCGATTTTATAGCAATTAGATGATTGTATTTAGTCAAATACCTAAGAACAGACTCCAACCTTCCTTCAATTACAGTACCTCTAAACAAATCTGTTCCAAAATTTGTTCCCATCTTGGTTGTGGTTTGAGAGAAATTCCTGATATACATTCATAATATAGAGCCTCTCAAAGAGTTTGAGTTTTTAATTTCAGCCTCCCCCAGTCCTCAAGGGGTGACACAGTGATTGAAGACTTGAGTTTTGAAGGTATGCTCCCTTCAAAATTCCAAGTTCGAGATTCACCTGTGGTATTATTCCTTCTATGTCTCCCAGTACCTGGATTAGGGACGGGCGTGGTTACCCTTGTTTCAAAAAAAATTTCAGCATCCCCTAAATTCAGTACTCTGTTGTTGATTTTATTTCATATGTATTTGTATTTGTGTGACTTTTCATTTATTTTAACGAAGGATGAAAGCCAATTAATTAAGTTTGTTAACTGCAGATAACTTATTCTGGTGCTATAGTGGAGGTCTGCATGAGAAAACTAGGGTTCTATCCAGAAATTGTTGGCTTCATTGAAGAAGAAAAGGATAAATTCCCTTCAGTTAAGGTTCAATATATCTTCAACTCTCCGCCGAAGCTGATTTTGCTGGATGATGAGGGCCAACATAAAGAGAGCGTCAGGTAACTTCTATTTTAGAGAGACCCTGTGTTAAAGGCCATAAACGTCAATGTTTCTTTTTTGACGAGAACTAAGCTTTTATACGGAACAAAAGAATACATAAAAAAACGAAGCTTAAACAAAAAACGGAAACCAGAGAACCATGAAGAGAAAAAGAGATAGTTACACCATCCTAGGTTGGCGTGGTAGTTAAGAGAACATTGGGAAGGTAAAACGTTGTAGGTTCAATCTATGGTAACCATTTAACTACAATTTAGTTTTCTATGTATTTTCTTGACCTTCAAATGGTTTGTCTCGTTAGAATAGTCTAATGTAAATTGACTTAAATATTCATAGATATAAAAGATAATTACAAAATACTGTAGGAGTTGAATGCTAAAACAGAGATGTTAAATCTAGCTAAAGCCTAAAGGTCGTATCTCCCTCCCAGATGTTGTAATCTATACCTCCAATGGAGTGGTTTAGTGGTCAAGAGGGTCTTGGACAACTAAGAAGTGATGGGTTCAATCCATAGTAGCCACCAATCTAAGAATTGATTTCCTATGGACTTTCTTTACATCCAAATATTGTAGAGTCAGGTGGTATGTCCCATAACATAAGTCGAGATTATACGCCAAGCTGACTCGGACAGTCATGGATATCAAATAAAAAAATCTATACCTCCAAAAGTTCTCTATTTCTACTGTAAGGTGTTTGCCCAACCAAATGATTTGTTATATCGTCTGGAAGAATGCTTGCATCCATACATTAGTTACTGTTTAGTTTATATAATATCTTATAGAAGCGAAATCATTCACTTGTGAGTGAATTGTGAATGAGCATAACTTAGTGGATGCGTATTTACAATTCTAAAGATCGATGGTTCAAATTTCCAACCCTCGATCTAACCAATAATAATAAATAATGAAGAATATGTTGATTACTAAGATGGTGTAAAGAGCTATGTAGATTTTGCCATAGCTTATGGGTATTGACCATTGATATTTGATATGTTACTTTAGGTGACATGAAAAGGTTTTTGATATTTTTCCCCTTTTTTGCAGAATTGATAATTGGAAACGCGAACATATTTTGCAGTTCCTGCAGGAGAAAGTTAAGCGTTCTGCAGCAATTTAAGGTTCTTTTTTTAATCTCCCAAAAAAAAAACTTGAAGCAGAAGTTGAATCAAATGTACTAATCCTTTTTTTGTCAATTCCAGAGATAGTTGGAAAGATAACTGATTTATTTGACTTATCCTTTAAAAAAATTTAAAAAATTAAATAGCGTGCCATTAAAACATTTCTTCCTGTGTGGTTATAAATTCAATCCTCCACCTCTGATATTTGATCTTTTTTTAAAAAAAATATTTTGCGC

mRNA sequence

GTCGGAGTAAATTCTTTTTTTAATTATATTTCTCCAAATATGCAGTAAATGTAATTGGTGTTTTCGAGTGAGTTTTCAGATCGTCTCTAGACTTGGATTCTTTACCCACTCGACGGTGGTCGCAAAGATGCAGCTTCTCACCGGTGCGAAGAAGCCGGCTACGGCGGCGATGGCGACAGCGGCGGCGATCATTTTCATGGCGTCAATGCCGTTGGCATGGTCAAAGGAGCAACTCAGTTCGAGGCAATGTGAGGATCTAGGTTTCACAGGCCTTGCTCTCTGTTCCGATTGCCACACTTTAGCTGAATATGTCAAAGATCAAGAATTAGTGTCAGACTGTTTGAAGTGTTGCACGGAGGATTCCGATGATGCCACGAGTAAGATAACTTATTCTGGTGCTATAGTGGAGGTCTGCATGAGAAAACTAGGGTTCTATCCAGAAATTGTTGGCTTCATTGAAGAAGAAAAGGATAAATTCCCTTCAGTTAAGGTTCAATATATCTTCAACTCTCCGCCGAAGCTGATTTTGCTGGATGATGAGGGCCAACATAAAGAGAGCGTCAGAATTGATAATTGGAAACGCGAACATATTTTGCAGTTCCTGCAGGAGAAAGTTAAGCGTTCTGCAGCAATTTAAGGTTCTTTTTTTAATCTCCCAAAAAAAAAACTTGAAGCAGAAGTTGAATCAAATGTACTAATCCTTTTTTTGTCAATTCCAGAGATAGTTGGAAAGATAACTGATTTATTTGACTTATCCTTTAAAAAAATTTAAAAAATTAAATAGCGTGCCATTAAAACATTTCTTCCTGTGTGGTTATAAATTCAATCCTCCACCTCTGATATTTGATCTTTTTTTAAAAAAAATATTTTGCGC

Coding sequence (CDS)

ATGCAGCTTCTCACCGGTGCGAAGAAGCCGGCTACGGCGGCGATGGCGACAGCGGCGGCGATCATTTTCATGGCGTCAATGCCGTTGGCATGGTCAAAGGAGCAACTCAGTTCGAGGCAATGTGAGGATCTAGGTTTCACAGGCCTTGCTCTCTGTTCCGATTGCCACACTTTAGCTGAATATGTCAAAGATCAAGAATTAGTGTCAGACTGTTTGAAGTGTTGCACGGAGGATTCCGATGATGCCACGAGTAAGATAACTTATTCTGGTGCTATAGTGGAGGTCTGCATGAGAAAACTAGGGTTCTATCCAGAAATTGTTGGCTTCATTGAAGAAGAAAAGGATAAATTCCCTTCAGTTAAGGTTCAATATATCTTCAACTCTCCGCCGAAGCTGATTTTGCTGGATGATGAGGGCCAACATAAAGAGAGCGTCAGAATTGATAATTGGAAACGCGAACATATTTTGCAGTTCCTGCAGGAGAAAGTTAAGCGTTCTGCAGCAATTTAA

Protein sequence

MQLLTGAKKPATAAMATAAAIIFMASMPLAWSKEQLSSRQCEDLGFTGLALCSDCHTLAEYVKDQELVSDCLKCCTEDSDDATSKITYSGAIVEVCMRKLGFYPEIVGFIEEEKDKFPSVKVQYIFNSPPKLILLDDEGQHKESVRIDNWKREHILQFLQEKVKRSAAI

Homology

[Close]

BLAST of Sed0014008 vs. NCBI nr
Match: XP_038875398.1 (selenoprotein F [Benincasa hispida])

HSP 1 Score: 305.8 bits (782), Expect = 2.3e-79
Identity = 151/171 (88.30%), Postives = 162/171 (94.74%), Query Frame = 0


Query: 1   MQLLTGAKKPATA-AMATAA-AIIFMASMPLAWSKEQLSSRQCEDLGFTGLALCSDCHTL 60
           MQLL G + PATA  MA AA  +IF+ASMPLAWSKEQLSSR+CEDLGFTGLALCSDCHTL
Sbjct: 1   MQLLPGVRNPATAVTMAVAATVVIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL 60

Query: 61  AEYVKDQELVSDCLKCCTEDSDDATSKITYSGAIVEVCMRKLGFYPEIVGFIEEEKDKFP 120
           AEY+KDQELV+DCLKCCTEDSDDATSKITYSGA++EVCMRKL FYPEIVGFIEEEKD+FP
Sbjct: 61  AEYIKDQELVTDCLKCCTEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEEEKDQFP 120

Query: 121 SVKVQYIFNSPPKLILLDDEGQHKESVRIDNWKREHILQFLQEKVKRSAAI 170
           SVKVQYIFNSPPKLILLDDEGQHKES+RIDNWKREHILQFLQEKVKRS+AI
Sbjct: 121 SVKVQYIFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLQEKVKRSSAI 171

[Close]

BLAST of Sed0014008 vs. NCBI nr
Match: XP_022960129.1 (selenoprotein F-like [Cucurbita moschata])

HSP 1 Score: 304.7 bits (779), Expect = 5.0e-79
Identity = 150/171 (87.72%), Postives = 159/171 (92.98%), Query Frame = 0


Query: 1   MQLLTGAKKPAT--AAMATAAAIIFMASMPLAWSKEQLSSRQCEDLGFTGLALCSDCHTL 60
           MQL    KKPAT  A  A AAAIIFMASMPLAWSKEQLSSR+CEDLGFTGLALCSDCHTL
Sbjct: 1   MQLFADVKKPATVVAMAAWAAAIIFMASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL 60

Query: 61  AEYVKDQELVSDCLKCCTEDSDDATSKITYSGAIVEVCMRKLGFYPEIVGFIEEEKDKFP 120
           AEY+KDQELV+DCLKCCTEDSDDATSKITYSGA++EVCMRKL FYPEIVGFIEEEKDKFP
Sbjct: 61  AEYIKDQELVADCLKCCTEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEEEKDKFP 120

Query: 121 SVKVQYIFNSPPKLILLDDEGQHKESVRIDNWKREHILQFLQEKVKRSAAI 170
           SVK+QYIFNSPPKL LLDDEGQHKES+RIDNWKREHILQFLQ+KVK S+AI
Sbjct: 121 SVKIQYIFNSPPKLTLLDDEGQHKESIRIDNWKREHILQFLQDKVKLSSAI 171

[Close]

BLAST of Sed0014008 vs. NCBI nr
Match: KAG6592972.1 (Selenoprotein F, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 302.8 bits (774), Expect = 1.9e-78
Identity = 148/171 (86.55%), Postives = 159/171 (92.98%), Query Frame = 0


Query: 1   MQLLTGAKKPATAA--MATAAAIIFMASMPLAWSKEQLSSRQCEDLGFTGLALCSDCHTL 60
           MQL T  K+PAT     A AAAIIF+ASMPLAWSKEQLSSR+CEDLGFTGLALCSDCHTL
Sbjct: 32  MQLFTDVKRPATVVGMAAWAAAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL 91

Query: 61  AEYVKDQELVSDCLKCCTEDSDDATSKITYSGAIVEVCMRKLGFYPEIVGFIEEEKDKFP 120
           AEY+KDQELV+DCLKCCTEDSDDATSKITYSGA++EVCMRKL FYPEIVGFIEEEKDKFP
Sbjct: 92  AEYIKDQELVADCLKCCTEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEEEKDKFP 151

Query: 121 SVKVQYIFNSPPKLILLDDEGQHKESVRIDNWKREHILQFLQEKVKRSAAI 170
           SVK+QYIFNSPPKL LLDDEGQHKES+RIDNWKREHILQFLQ+KVK S+AI
Sbjct: 152 SVKIQYIFNSPPKLTLLDDEGQHKESIRIDNWKREHILQFLQDKVKLSSAI 202

[Close]

BLAST of Sed0014008 vs. NCBI nr
Match: KAG7025384.1 (Selenoprotein F [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 302.8 bits (774), Expect = 1.9e-78
Identity = 148/171 (86.55%), Postives = 159/171 (92.98%), Query Frame = 0


Query: 1   MQLLTGAKKPATAA--MATAAAIIFMASMPLAWSKEQLSSRQCEDLGFTGLALCSDCHTL 60
           MQL T  K+PAT     A AAAIIF+ASMPLAWSKEQLSSR+CEDLGFTGLALCSDCHTL
Sbjct: 1   MQLFTDVKRPATVVGMAAWAAAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL 60

Query: 61  AEYVKDQELVSDCLKCCTEDSDDATSKITYSGAIVEVCMRKLGFYPEIVGFIEEEKDKFP 120
           AEY+KDQELV+DCLKCCTEDSDDATSKITYSGA++EVCMRKL FYPEIVGFIEEEKDKFP
Sbjct: 61  AEYIKDQELVADCLKCCTEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEEEKDKFP 120

Query: 121 SVKVQYIFNSPPKLILLDDEGQHKESVRIDNWKREHILQFLQEKVKRSAAI 170
           SVK+QYIFNSPPKL LLDDEGQHKES+RIDNWKREHILQFLQ+KVK S+AI
Sbjct: 121 SVKIQYIFNSPPKLTLLDDEGQHKESIRIDNWKREHILQFLQDKVKLSSAI 171

[Close]

BLAST of Sed0014008 vs. NCBI nr
Match: XP_023004122.1 (selenoprotein F-like [Cucurbita maxima])

HSP 1 Score: 302.0 bits (772), Expect = 3.3e-78
Identity = 149/171 (87.13%), Postives = 158/171 (92.40%), Query Frame = 0


Query: 1   MQLLTGAKKPAT--AAMATAAAIIFMASMPLAWSKEQLSSRQCEDLGFTGLALCSDCHTL 60
           MQL    KKPAT  A  A  AAIIF+ASMPLAWSKEQLSSR+CEDLGFTGLALCSDCHTL
Sbjct: 1   MQLFADVKKPATVVAMAAWTAAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL 60

Query: 61  AEYVKDQELVSDCLKCCTEDSDDATSKITYSGAIVEVCMRKLGFYPEIVGFIEEEKDKFP 120
           AEY+KDQELV+DCLKCCTEDSDDATSKITYSGA++EVCMRKL FYPEIVGFIEEEKDKFP
Sbjct: 61  AEYIKDQELVADCLKCCTEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEEEKDKFP 120

Query: 121 SVKVQYIFNSPPKLILLDDEGQHKESVRIDNWKREHILQFLQEKVKRSAAI 170
           SVKVQYIFNSPPKL LLDDEGQHKES+RIDNWKREHILQFLQ+KVK S+AI
Sbjct: 121 SVKVQYIFNSPPKLTLLDDEGQHKESIRIDNWKREHILQFLQDKVKLSSAI 171

[Close]

BLAST of Sed0014008 vs. ExPASy Swiss-Prot
Match: A8YXY3 (Selenoprotein F OS=Bos taurus OX=9913 GN=SELENOF PE=2 SV=2)

HSP 1 Score: 100.5 bits (249), Expect = 1.9e-20
Identity = 51/132 (38.64%), Postives = 78/132 (59.09%), Query Frame = 0


Query: 35  QLSSRQCEDLGFTGLALCSDCHTLAEYVKDQELVSDCLKCCTEDSDDATSKITYSGAIVE 94
           + SS  C +LGF+   LCS C  L ++    +L  DC  CC E++   T K+ Y+GAI+E
Sbjct: 32  EFSSESCRELGFSSNLLCSSCDLLGQF-NLLQLDPDCRGCCQEEAQFETKKL-YAGAILE 91

Query: 95  VCMRKLGFYPEIVGFIEEEKDK-FPSVKVQYIFNSPPKLILLDDEGQHKESVRIDNWKRE 154
           VC  KLG +P++  F+  +K K F  ++++Y+  S P L LLDD G   E + I  W  +
Sbjct: 92  VCGXKLGRFPQVQAFVRSDKPKLFKGLQIKYVRGSDPVLKLLDDSGNIAEELSILKWNTD 151

Query: 155 HILQFLQEKVKR 166
            + +FL EK++R
Sbjct: 152 SVEEFLSEKLER 161

[Close]

BLAST of Sed0014008 vs. ExPASy Swiss-Prot
Match: O60613 (Selenoprotein F OS=Homo sapiens OX=9606 GN=SELENOF PE=1 SV=4)

HSP 1 Score: 99.8 bits (247), Expect = 3.2e-20
Identity = 51/132 (38.64%), Postives = 78/132 (59.09%), Query Frame = 0


Query: 35  QLSSRQCEDLGFTGLALCSDCHTLAEYVKDQELVSDCLKCCTEDSDDATSKITYSGAIVE 94
           + SS  C +LGF+   LCS C  L ++    +L  DC  CC E++   T K+ Y+GAI+E
Sbjct: 35  EFSSEACRELGFSSNLLCSSCDLLGQF-NLLQLDPDCRGCCQEEAQFETKKL-YAGAILE 94

Query: 95  VCMRKLGFYPEIVGFIEEEKDK-FPSVKVQYIFNSPPKLILLDDEGQHKESVRIDNWKRE 154
           VC  KLG +P++  F+  +K K F  ++++Y+  S P L LLDD G   E + I  W  +
Sbjct: 95  VCGXKLGRFPQVQAFVRSDKPKLFRGLQIKYVRGSDPVLKLLDDNGNIAEELSILKWNTD 154

Query: 155 HILQFLQEKVKR 166
            + +FL EK++R
Sbjct: 155 SVEEFLSEKLER 164

[Close]

BLAST of Sed0014008 vs. ExPASy Swiss-Prot
Match: Q802F3 (Selenoprotein F OS=Danio rerio OX=7955 GN=selenof PE=2 SV=2)

HSP 1 Score: 98.6 bits (244), Expect = 7.2e-20
Identity = 51/132 (38.64%), Postives = 78/132 (59.09%), Query Frame = 0


Query: 35  QLSSRQCEDLGFTGLALCSDCHTLAEYVKDQELVSDCLKCCTEDSDDATSKITYSGAIVE 94
           +LSS  C +LGF+   LCS C  L ++  +Q L   C +CC E++     K+ Y GAI+E
Sbjct: 23  ELSSEACRELGFSSNLLCSSCELLGQFSLNQ-LDLPCRQCCQEEAQLENRKL-YPGAILE 82

Query: 95  VCMRKLGFYPEIVGFIEEEKDK-FPSVKVQYIFNSPPKLILLDDEGQHKESVRIDNWKRE 154
           VC  KLG +P++  F+  +K K F  ++++Y+  S P L LLDD G   E + I  W  +
Sbjct: 83  VCGXKLGRFPQVQAFVRSDKPKLFRGLQIKYVRGSDPVLKLLDDNGNIAEELSILKWNTD 142

Query: 155 HILQFLQEKVKR 166
            + +FL EK++R
Sbjct: 143 SVEEFLSEKLER 152

[Close]

BLAST of Sed0014008 vs. ExPASy Swiss-Prot
Match: A1Z623 (Selenoprotein F OS=Sus scrofa OX=9823 GN=SELENOF PE=2 SV=2)

HSP 1 Score: 98.6 bits (244), Expect = 7.2e-20
Identity = 51/132 (38.64%), Postives = 77/132 (58.33%), Query Frame = 0


Query: 35  QLSSRQCEDLGFTGLALCSDCHTLAEYVKDQELVSDCLKCCTEDSDDATSKITYSGAIVE 94
           + SS  C +LGF+   LC  C  L ++   Q L  DC  CC E++   T K+ Y+GAI+E
Sbjct: 32  EFSSESCRELGFSSNLLCGSCDLLGQFDLLQ-LDPDCRGCCQEEAQFETKKL-YAGAILE 91

Query: 95  VCMRKLGFYPEIVGFIEEEKDK-FPSVKVQYIFNSPPKLILLDDEGQHKESVRIDNWKRE 154
           VC  KLG +P++  F+  +K K F  ++++Y+  S P L LLDD G   E + I  W  +
Sbjct: 92  VCGXKLGRFPQVQAFVRSDKPKLFRGLQIKYVRGSDPVLKLLDDNGNIAEELSILKWNTD 151

Query: 155 HILQFLQEKVKR 166
            + +FL EK++R
Sbjct: 152 SVEEFLSEKLQR 161

[Close]

BLAST of Sed0014008 vs. ExPASy Swiss-Prot
Match: Q923V8 (Selenoprotein F OS=Rattus norvegicus OX=10116 GN=Selenof PE=1 SV=3)

HSP 1 Score: 95.1 bits (235), Expect = 7.9e-19
Identity = 50/132 (37.88%), Postives = 76/132 (57.58%), Query Frame = 0


Query: 35  QLSSRQCEDLGFTGLALCSDCHTLAEYVKDQELVSDCLKCCTEDSDDATSKITYSGAIVE 94
           + SS  C +LGF+   LCS C  L ++     L   C  CC E++   T K+ Y+GAI+E
Sbjct: 32  EFSSEACRELGFSSNLLCSSCDLLGQF-NLLPLDPVCRGCCQEEAQFETKKL-YAGAILE 91

Query: 95  VCMRKLGFYPEIVGFIEEEKDK-FPSVKVQYIFNSPPKLILLDDEGQHKESVRIDNWKRE 154
           VC  KLG +P++  F+  +K K F  ++++Y+  S P L LLDD G   E + I  W  +
Sbjct: 92  VCGXKLGRFPQVQAFVRSDKPKLFRGLQIKYVRGSDPVLKLLDDNGNIAEELSILKWNTD 151

Query: 155 HILQFLQEKVKR 166
            + +FL EK++R
Sbjct: 152 SVEEFLSEKLER 161

[Close]

BLAST of Sed0014008 vs. ExPASy TrEMBL
Match: A0A6J1HA08 (selenoprotein F-like OS=Cucurbita moschata OX=3662 GN=LOC111460968 PE=3 SV=1)

HSP 1 Score: 304.7 bits (779), Expect = 2.4e-79
Identity = 150/171 (87.72%), Postives = 159/171 (92.98%), Query Frame = 0


Query: 1   MQLLTGAKKPAT--AAMATAAAIIFMASMPLAWSKEQLSSRQCEDLGFTGLALCSDCHTL 60
           MQL    KKPAT  A  A AAAIIFMASMPLAWSKEQLSSR+CEDLGFTGLALCSDCHTL
Sbjct: 1   MQLFADVKKPATVVAMAAWAAAIIFMASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL 60

Query: 61  AEYVKDQELVSDCLKCCTEDSDDATSKITYSGAIVEVCMRKLGFYPEIVGFIEEEKDKFP 120
           AEY+KDQELV+DCLKCCTEDSDDATSKITYSGA++EVCMRKL FYPEIVGFIEEEKDKFP
Sbjct: 61  AEYIKDQELVADCLKCCTEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEEEKDKFP 120

Query: 121 SVKVQYIFNSPPKLILLDDEGQHKESVRIDNWKREHILQFLQEKVKRSAAI 170
           SVK+QYIFNSPPKL LLDDEGQHKES+RIDNWKREHILQFLQ+KVK S+AI
Sbjct: 121 SVKIQYIFNSPPKLTLLDDEGQHKESIRIDNWKREHILQFLQDKVKLSSAI 171

[Close]

BLAST of Sed0014008 vs. ExPASy TrEMBL
Match: A0A6J1KPJ2 (selenoprotein F-like OS=Cucurbita maxima OX=3661 GN=LOC111497549 PE=3 SV=1)

HSP 1 Score: 302.0 bits (772), Expect = 1.6e-78
Identity = 149/171 (87.13%), Postives = 158/171 (92.40%), Query Frame = 0


Query: 1   MQLLTGAKKPAT--AAMATAAAIIFMASMPLAWSKEQLSSRQCEDLGFTGLALCSDCHTL 60
           MQL    KKPAT  A  A  AAIIF+ASMPLAWSKEQLSSR+CEDLGFTGLALCSDCHTL
Sbjct: 1   MQLFADVKKPATVVAMAAWTAAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL 60

Query: 61  AEYVKDQELVSDCLKCCTEDSDDATSKITYSGAIVEVCMRKLGFYPEIVGFIEEEKDKFP 120
           AEY+KDQELV+DCLKCCTEDSDDATSKITYSGA++EVCMRKL FYPEIVGFIEEEKDKFP
Sbjct: 61  AEYIKDQELVADCLKCCTEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEEEKDKFP 120

Query: 121 SVKVQYIFNSPPKLILLDDEGQHKESVRIDNWKREHILQFLQEKVKRSAAI 170
           SVKVQYIFNSPPKL LLDDEGQHKES+RIDNWKREHILQFLQ+KVK S+AI
Sbjct: 121 SVKVQYIFNSPPKLTLLDDEGQHKESIRIDNWKREHILQFLQDKVKLSSAI 171

[Close]

BLAST of Sed0014008 vs. ExPASy TrEMBL
Match: A0A1S3CC00 (15 kDa selenoprotein OS=Cucumis melo OX=3656 GN=LOC103498956 PE=3 SV=1)

HSP 1 Score: 300.4 bits (768), Expect = 4.6e-78
Identity = 147/171 (85.96%), Postives = 158/171 (92.40%), Query Frame = 0


Query: 1   MQLLTGAKKPATAAMAT--AAAIIFMASMPLAWSKEQLSSRQCEDLGFTGLALCSDCHTL 60
           MQLL G   PATA   T  AAAIIF++SMPLAWSKEQLSSR+CEDLGFTGLALCSDCHTL
Sbjct: 1   MQLLPGVWNPATAVTVTLAAAAIIFISSMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL 60

Query: 61  AEYVKDQELVSDCLKCCTEDSDDATSKITYSGAIVEVCMRKLGFYPEIVGFIEEEKDKFP 120
           AEY+KDQELV+DCLKCC EDSDDATSKITYSGA++EVCMRKL FYPEIVGFIEE+KD+FP
Sbjct: 61  AEYIKDQELVADCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEEDKDQFP 120

Query: 121 SVKVQYIFNSPPKLILLDDEGQHKESVRIDNWKREHILQFLQEKVKRSAAI 170
           SVKVQY FNSPPKLILLDDEGQHKES+RIDNWKREH LQFLQEKVKRS+AI
Sbjct: 121 SVKVQYTFNSPPKLILLDDEGQHKESIRIDNWKREHFLQFLQEKVKRSSAI 171

[Close]

BLAST of Sed0014008 vs. ExPASy TrEMBL
Match: A0A6J1GQK6 (selenoprotein F-like OS=Cucurbita moschata OX=3662 GN=LOC111456577 PE=3 SV=1)

HSP 1 Score: 298.5 bits (763), Expect = 1.7e-77
Identity = 148/170 (87.06%), Postives = 159/170 (93.53%), Query Frame = 0


Query: 1   MQLLTGAKKPATAAMATAAAIIFMASMPLAWSKEQLSSRQCEDLGFTGLALCSDCHTLAE 60
           MQLLTG K PAT  +  A AIIF+ASMPLAWSKEQLSSR+CEDLGFTGLALCSDCHTLAE
Sbjct: 1   MQLLTGVKNPAT-MVTMATAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAE 60

Query: 61  YVKDQELVSDCLKCCTEDSDDATSKITYSGAIVEVCMRKLGFYPEIVGFIEEEKDKFPSV 120
           Y+KDQELV+DCLKCCTEDSDDATSKITYSGA++EVCMRKL FYPEIVGFIEEEKD+FPSV
Sbjct: 61  YIKDQELVTDCLKCCTEDSDDATSKITYSGAMLEVCMRKLVFYPEIVGFIEEEKDQFPSV 120

Query: 121 KVQYIFNSPPKLILLDDEGQHKESVRIDNWKREHILQFLQEKVK-RSAAI 170
            VQY FNSPPKLILLDDEGQHKES+RIDNWKREHILQFL+EKVK RS+AI
Sbjct: 121 NVQYTFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLKEKVKQRSSAI 169

[Close]

BLAST of Sed0014008 vs. ExPASy TrEMBL
Match: A0A6J1JXH9 (selenoprotein F-like OS=Cucurbita maxima OX=3661 GN=LOC111488731 PE=3 SV=1)

HSP 1 Score: 295.0 bits (754), Expect = 1.9e-76
Identity = 147/170 (86.47%), Postives = 158/170 (92.94%), Query Frame = 0


Query: 1   MQLLTGAKKPATAAMATAAAIIFMASMPLAWSKEQLSSRQCEDLGFTGLALCSDCHTLAE 60
           MQLLTG K PAT  +  A AIIF+ASMPLAWSKEQLSSR+CEDLGFTGLALCSDCHTLAE
Sbjct: 1   MQLLTGVKNPAT-MVTMATAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAE 60

Query: 61  YVKDQELVSDCLKCCTEDSDDATSKITYSGAIVEVCMRKLGFYPEIVGFIEEEKDKFPSV 120
           Y+KDQELV+DCLKCCTEDSDDATSKITYSGA++EVCMRKL FYPEIVGFIEEEK +FPSV
Sbjct: 61  YIKDQELVTDCLKCCTEDSDDATSKITYSGAMLEVCMRKLVFYPEIVGFIEEEKYQFPSV 120

Query: 121 KVQYIFNSPPKLILLDDEGQHKESVRIDNWKREHILQFLQEKVK-RSAAI 170
            VQY FNSPPKLILLDDEGQHKES+RIDNWKREHILQFL+EKVK RS+AI
Sbjct: 121 NVQYTFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLKEKVKQRSSAI 169

[Close]

BLAST of Sed0014008 vs. TAIR 10
Match: AT1G05720.1 (selenoprotein family protein )

HSP 1 Score: 247.3 bits (630), Expect = 8.9e-66
Identity = 114/161 (70.81%), Postives = 142/161 (88.20%), Query Frame = 0


Query: 8   KKPATAAMATAAAIIFMASMPLAWSKEQLSSRQCEDLGFTGLALCSDCHTLAEYVKDQEL 67
           K+   A M   +A++ +       +KEQLS+++CEDLGF+GLALCSDCH+L+EYVKDQEL
Sbjct: 2   KQREMAKMVVLSAMMILILASTISAKEQLSTKECEDLGFSGLALCSDCHSLSEYVKDQEL 61

Query: 68  VSDCLKCCTEDSDDATSKITYSGAIVEVCMRKLGFYPEIVGFIEEEKDKFPSVKVQYIFN 127
           VSDCLKCC +DS+D+ SK+TYSGAI+EVCMRKL FYPEIVGFIEEEK+KFPSVKVQYIFN
Sbjct: 62  VSDCLKCCADDSEDSMSKVTYSGAILEVCMRKLVFYPEIVGFIEEEKEKFPSVKVQYIFN 121

Query: 128 SPPKLILLDDEGQHKESVRIDNWKREHILQFLQEKVKRSAA 169
           SPPKLI+LD++G+HKES+RIDNWKREH+LQ+++EKVK +AA
Sbjct: 122 SPPKLIMLDEDGEHKESIRIDNWKREHLLQYMREKVKPTAA 162

The following BLAST results are available for this feature:

BLAST of Sed0014008 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038875398.1	2.3e-79	88.30	selenoprotein F [Benincasa hispida]	[more]
XP_022960129.1	5.0e-79	87.72	selenoprotein F-like [Cucurbita moschata]	[more]
KAG6592972.1	1.9e-78	86.55	Selenoprotein F, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7025384.1	1.9e-78	86.55	Selenoprotein F [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023004122.1	3.3e-78	87.13	selenoprotein F-like [Cucurbita maxima]	[more]

BLAST of Sed0014008 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A8YXY3	1.9e-20	38.64	Selenoprotein F OS=Bos taurus OX=9913 GN=SELENOF PE=2 SV=2	[more]
O60613	3.2e-20	38.64	Selenoprotein F OS=Homo sapiens OX=9606 GN=SELENOF PE=1 SV=4	[more]
Q802F3	7.2e-20	38.64	Selenoprotein F OS=Danio rerio OX=7955 GN=selenof PE=2 SV=2	[more]
A1Z623	7.2e-20	38.64	Selenoprotein F OS=Sus scrofa OX=9823 GN=SELENOF PE=2 SV=2	[more]
Q923V8	7.9e-19	37.88	Selenoprotein F OS=Rattus norvegicus OX=10116 GN=Selenof PE=1 SV=3	[more]

BLAST of Sed0014008 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HA08	2.4e-79	87.72	selenoprotein F-like OS=Cucurbita moschata OX=3662 GN=LOC111460968 PE=3 SV=1	[more]
A0A6J1KPJ2	1.6e-78	87.13	selenoprotein F-like OS=Cucurbita maxima OX=3661 GN=LOC111497549 PE=3 SV=1	[more]
A0A1S3CC00	4.6e-78	85.96	15 kDa selenoprotein OS=Cucumis melo OX=3656 GN=LOC103498956 PE=3 SV=1	[more]
A0A6J1GQK6	1.7e-77	87.06	selenoprotein F-like OS=Cucurbita moschata OX=3662 GN=LOC111456577 PE=3 SV=1	[more]
A0A6J1JXH9	1.9e-76	86.47	selenoprotein F-like OS=Cucurbita maxima OX=3661 GN=LOC111488731 PE=3 SV=1	[more]

BLAST of Sed0014008 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G05720.1	8.9e-66	70.81	selenoprotein family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038219	Selenoprotein F/M, thioredoxin-like domain superfamily	GENE3D	3.40.30.50		coord: 48..121 e-value: 3.5E-27 score: 96.5
IPR014912	Selenoprotein F/M domain	PFAM	PF08806	Sep15_SelM	coord: 49..121 e-value: 2.6E-28 score: 97.9
IPR039992	Selenoprotein F/M	PANTHER	PTHR13077	SELENOPROTEIN F	coord: 23..125
None	No IPR available	PANTHER	PTHR13077:SF8	BNAANNG25340D PROTEIN	coord: 23..125
IPR036249	Thioredoxin-like superfamily	SUPERFAMILY	52833	Thioredoxin-like	coord: 32..123

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0014008.1	Sed0014008.1	mRNA
Sed0014008.2	Sed0014008.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005788	endoplasmic reticulum lumen
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0016491	oxidoreductase activity