Sed0013976 (gene) Chayote v1

Overview


Name	Sed0013976
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Phospho-N-acetylmuramoyl-pentapeptide-transferase, putative
Location	LG05: 41518322 .. 41519085 (-)
RNA-Seq Expression	Sed0013976
Synteny	Sed0013976

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTAATACGCATTCTATTCTCCATTCAAATTGCCTTTTTTCATCTTATTTTCCATTTTCTCAAAGTGCTTTTACTTTCTTTCACGCTCCAATTTTCTCTAAAATCCTCAACTTTTCCAATATGAAGAAATCTGGTTTCATTGCCGCCACCGTCGCCGCCGCCTCCGCCGCCGTCTCCGCCTCCCCTTCTTCCTCTGTTCTTCTCTGCAACACTAAAGTTCAATTCCCTCATCAGGTAAAGCCATGATTCAAAATTCATCAATTTCCCAATTGAAAAAGAAACACCCCTTTTTCAATTTGAAGTTTTGATCTAAAAATTTCGTATTTTTGGCTGTTTTTTGAGATTTGGGTTTTTTTTTTTTTAATTTGCAGGAAGGAAAAGAAGGAGAGAATTCTTCGTCTCCGGCGGATAAATTTGCTCCAAAATTTGATGGGTTGAGATTTATTGAAACTCTGGTGACGGCTCACCGATGAGCTCCGCCGTGGCTGCATTTGGATGGGGCGGAACCCACCGCCGCCGCAACTTTTGTATGCTTCTTTTTTTTCTTTTTTCTTTTTTCAAAAGTCTCATTTTGTAAATTAAAAATAGGGGGGTTGCCACTTGCCAGCTCTGCAAGCAGATTGAATAATAGTTTTAGTTTTAAACTTATTTAATTCTATTTTAATAAATTACCAAAAGATGGAAAAGAAACGTGTTTTTTATTTTGTCTATTTGTTTAGTTTGTTAGGATGAATAATTCACCGCCTCAATACGTGGATTGGTA

mRNA sequence

ATTTAATACGCATTCTATTCTCCATTCAAATTGCCTTTTTTCATCTTATTTTCCATTTTCTCAAAGTGCTTTTACTTTCTTTCACGCTCCAATTTTCTCTAAAATCCTCAACTTTTCCAATATGAAGAAATCTGGTTTCATTGCCGCCACCGTCGCCGCCGCCTCCGCCGCCGTCTCCGCCTCCCCTTCTTCCTCTGTTCTTCTCTGCAACACTAAAGTTCAATTCCCTCATCAGGAAGGAAAAGAAGGAGAGAATTCTTCGTCTCCGGCGGATAAATTTGCTCCAAAATTTGATGGGTTGAGATTTATTGAAACTCTGGTGACGGCTCACCGATGAGCTCCGCCGTGGCTGCATTTGGATGGGGCGGAACCCACCGCCGCCGCAACTTTTGTATGCTTCTTTTTTTTCTTTTTTCTTTTTTCAAAAGTCTCATTTTGTAAATTAAAAATAGGGGGGTTGCCACTTGCCAGCTCTGCAAGCAGATTGAATAATAGTTTTAGTTTTAAACTTATTTAATTCTATTTTAATAAATTACCAAAAGATGGAAAAGAAACGTGTTTTTTATTTTGTCTATTTGTTTAGTTTGTTAGGATGAATAATTCACCGCCTCAATACGTGGATTGGTA

Coding sequence (CDS)

ATGAAGAAATCTGGTTTCATTGCCGCCACCGTCGCCGCCGCCTCCGCCGCCGTCTCCGCCTCCCCTTCTTCCTCTGTTCTTCTCTGCAACACTAAAGTTCAATTCCCTCATCAGGAAGGAAAAGAAGGAGAGAATTCTTCGTCTCCGGCGGATAAATTTGCTCCAAAATTTGATGGGTTGAGATTTATTGAAACTCTGGTGACGGCTCACCGATGA

Protein sequence

MKKSGFIAATVAAASAAVSASPSSSVLLCNTKVQFPHQEGKEGENSSSPADKFAPKFDGLRFIETLVTAHR

Homology

[Close]

BLAST of Sed0013976 vs. NCBI nr
Match: XP_038902353.1 (uncharacterized protein LOC120088987 [Benincasa hispida])

HSP 1 Score: 114.8 bits (286), Expect = 3.1e-22
Identity = 62/71 (87.32%), Postives = 64/71 (90.14%), Query Frame = 0


Query: 1  MKKSGFIAATVAAASAAVSASPSSSVLLCNTKVQFPHQEGKEGENSSSPADKFAPKFDGL 60
          MKKSGFIAA+VAA  AAVSASPSSS L+CN KVQFP QEGKEGENSSS  DKFAPKFDGL
Sbjct: 1  MKKSGFIAASVAA--AAVSASPSSSTLVCNPKVQFPRQEGKEGENSSSSTDKFAPKFDGL 60

Query: 61 RFIETLVTAHR 72
          RFIETLVTAHR
Sbjct: 61 RFIETLVTAHR 69

[Close]

BLAST of Sed0013976 vs. NCBI nr
Match: XP_022140652.1 (uncharacterized protein LOC111011258 [Momordica charantia])

HSP 1 Score: 112.5 bits (280), Expect = 1.5e-21
Identity = 60/71 (84.51%), Postives = 62/71 (87.32%), Query Frame = 0


Query: 1  MKKSGFIAATVAAASAAVSASPSSSVLLCNTKVQFPHQEGKEGENSSSPADKFAPKFDGL 60
          MKKS FIAA+VA ASAAVSASPSSS  +CN KVQFP QEGK  ENSSS ADKFAPKFDGL
Sbjct: 1  MKKSAFIAASVAGASAAVSASPSSSTFVCNPKVQFPRQEGKVEENSSSSADKFAPKFDGL 60

Query: 61 RFIETLVTAHR 72
          RFIETLVTAHR
Sbjct: 61 RFIETLVTAHR 71

[Close]

BLAST of Sed0013976 vs. NCBI nr
Match: XP_022970726.1 (uncharacterized protein LOC111469626 [Cucurbita maxima])

HSP 1 Score: 110.5 bits (275), Expect = 5.9e-21
Identity = 60/72 (83.33%), Postives = 64/72 (88.89%), Query Frame = 0


Query: 1  MKKSGFIAATVAAASAAVSASPSSSVLLCNTKVQFPHQEGKE-GENSSSPADKFAPKFDG 60
          MKKSGFIAA++AAASAAVSASPSSS L C+ K+Q P QE KE GENSSS ADKFAPKFDG
Sbjct: 1  MKKSGFIAASIAAASAAVSASPSSSTLFCDPKIQLPRQEEKELGENSSSSADKFAPKFDG 60

Query: 61 LRFIETLVTAHR 72
          LRFIETLVTAHR
Sbjct: 61 LRFIETLVTAHR 72

[Close]

BLAST of Sed0013976 vs. NCBI nr
Match: KAG6604795.1 (hypothetical protein SDJN03_02112, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 110.5 bits (275), Expect = 5.9e-21
Identity = 60/72 (83.33%), Postives = 64/72 (88.89%), Query Frame = 0


Query: 1  MKKSGFIAATVAAASAAVSASPSSSVLLCNTKVQFPHQEGKE-GENSSSPADKFAPKFDG 60
          MKKSGFIAA+V AA+AAVSASPSSS L C+ K+QFP QE KE GENSSS ADKFAPKFDG
Sbjct: 1  MKKSGFIAASVTAAAAAVSASPSSSTLFCDPKIQFPRQEEKELGENSSSSADKFAPKFDG 60

Query: 61 LRFIETLVTAHR 72
          LRFIETLVTAHR
Sbjct: 61 LRFIETLVTAHR 72

[Close]

BLAST of Sed0013976 vs. NCBI nr
Match: KAG7034915.1 (hypothetical protein SDJN02_01708, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 108.2 bits (269), Expect = 2.9e-20
Identity = 59/72 (81.94%), Postives = 63/72 (87.50%), Query Frame = 0


Query: 1  MKKSGFIAATVAAASAAVSASPSSSVLLCNTKVQFPHQEGKE-GENSSSPADKFAPKFDG 60
          MKKSGFIAA+V AA+AAVSASPSSS L C+ K+Q P QE KE GENSSS ADKFAPKFDG
Sbjct: 1  MKKSGFIAASVTAAAAAVSASPSSSTLFCDPKIQLPRQEEKELGENSSSSADKFAPKFDG 60

Query: 61 LRFIETLVTAHR 72
          LRFIETLVTAHR
Sbjct: 61 LRFIETLVTAHR 72

[Close]

BLAST of Sed0013976 vs. ExPASy TrEMBL
Match: A0A6J1CHM8 (uncharacterized protein LOC111011258 OS=Momordica charantia OX=3673 GN=LOC111011258 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 7.5e-22
Identity = 60/71 (84.51%), Postives = 62/71 (87.32%), Query Frame = 0


Query: 1  MKKSGFIAATVAAASAAVSASPSSSVLLCNTKVQFPHQEGKEGENSSSPADKFAPKFDGL 60
          MKKS FIAA+VA ASAAVSASPSSS  +CN KVQFP QEGK  ENSSS ADKFAPKFDGL
Sbjct: 1  MKKSAFIAASVAGASAAVSASPSSSTFVCNPKVQFPRQEGKVEENSSSSADKFAPKFDGL 60

Query: 61 RFIETLVTAHR 72
          RFIETLVTAHR
Sbjct: 61 RFIETLVTAHR 71

[Close]

BLAST of Sed0013976 vs. ExPASy TrEMBL
Match: A0A6J1I1D6 (uncharacterized protein LOC111469626 OS=Cucurbita maxima OX=3661 GN=LOC111469626 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 2.8e-21
Identity = 60/72 (83.33%), Postives = 64/72 (88.89%), Query Frame = 0


Query: 1  MKKSGFIAATVAAASAAVSASPSSSVLLCNTKVQFPHQEGKE-GENSSSPADKFAPKFDG 60
          MKKSGFIAA++AAASAAVSASPSSS L C+ K+Q P QE KE GENSSS ADKFAPKFDG
Sbjct: 1  MKKSGFIAASIAAASAAVSASPSSSTLFCDPKIQLPRQEEKELGENSSSSADKFAPKFDG 60

Query: 61 LRFIETLVTAHR 72
          LRFIETLVTAHR
Sbjct: 61 LRFIETLVTAHR 72

[Close]

BLAST of Sed0013976 vs. ExPASy TrEMBL
Match: E0CTD2 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_12s0028g03790 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 2.6e-14
Identity = 51/78 (65.38%), Postives = 59/78 (75.64%), Query Frame = 0


Query: 1  MKKSGFIAATVAAASAAVSASPSSSVLLCNTKVQFPHQE---GKEGENS----SSPADKF 60
          MKKSGF AA+VAAASA   ++PSSS  LCN+K+Q    E   GK+ ENS    SS AD+F
Sbjct: 1  MKKSGFFAASVAAASATAISAPSSSGFLCNSKIQLSRDEAVAGKDIENSESQRSSSADRF 60

Query: 61 APKFDGLRFIETLVTAHR 72
          AP+FDGLRFIETLVTAHR
Sbjct: 61 APRFDGLRFIETLVTAHR 78

[Close]

BLAST of Sed0013976 vs. ExPASy TrEMBL
Match: A0A498HID0 (Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_031016 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 9.1e-12
Identity = 46/75 (61.33%), Postives = 58/75 (77.33%), Query Frame = 0


Query: 1   MKKSGFIAATVAAASA-AVSASPSSSVLLCNTKVQFPHQEG---KEGENSSSPADKFAPK 60
           MKK GF+AA+VAAASA A+SA+ SSS  + ++ ++F HQE    +  E SS+  DKFAPK
Sbjct: 40  MKKPGFLAASVAAASATALSATSSSSSFVSDSTMRFSHQEAGSKRNQEKSSASMDKFAPK 99

Query: 61  FDGLRFIETLVTAHR 72
           FDGLRFIETL+TAHR
Sbjct: 100 FDGLRFIETLITAHR 114

[Close]

BLAST of Sed0013976 vs. ExPASy TrEMBL
Match: A0A6J1AJZ1 (uncharacterized protein LOC110418707 OS=Herrania umbratica OX=108875 GN=LOC110418707 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.6e-11
Identity = 48/78 (61.54%), Postives = 57/78 (73.08%), Query Frame = 0


Query: 1  MKKSGFIAATVAAASA---AVSASPSSSVLLCNTKVQFPHQEGKEGENSS---SPA-DKF 60
          MKK G  AA+VAAASA   + S+SPSSS   CN+  QF  +E KE E S+   SP+ DKF
Sbjct: 1  MKKPGLFAASVAAASATAISASSSPSSSNFACNSNFQFSSEEKKEHEGSAIKKSPSKDKF 60

Query: 61 APKFDGLRFIETLVTAHR 72
          AP+FDGLRFIETL+TAHR
Sbjct: 61 APRFDGLRFIETLITAHR 78

[Close]

BLAST of Sed0013976 vs. TAIR 10
Match: AT4G28290.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 45 Blast hits to 45 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 60.1 bits (144), Expect = 8.5e-10
Identity = 40/80 (50.00%), Postives = 52/80 (65.00%), Query Frame = 0


Query: 1  MKKSGFIAA--TVAAASAAVSA-SPSSSVLLCNTKVQFPHQEGKE------GENSSSPAD 60
          MKK+G IAA  +VAA++ A+SA S ++SV   + +     QE KE      G +     +
Sbjct: 1  MKKTGIIAASISVAASATAISAGSTNTSVSFSSPESNLSRQEAKEKQRKKKGSSEDGGDE 60

Query: 61 KFAPKFDGLRFIETLVTAHR 72
          KFAP+FDGLRFIETLVTAHR
Sbjct: 61 KFAPRFDGLRFIETLVTAHR 80

[Close]

BLAST of Sed0013976 vs. TAIR 10
Match: AT5G42110.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; Has 36 Blast hits to 36 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 45.8 bits (107), Expect = 1.7e-05
Identity = 32/69 (46.38%), Postives = 44/69 (63.77%), Query Frame = 0


Query: 4  SGFIAATVAAASAAVSASPSSSVLLCNTKVQFPHQEGKEGEN-SSSPADKFAPKFDGLRF 63
          SG +A+ +A ++AA+S   SSS+L        P    K  E+  ++ +D F P+FDGLRF
Sbjct: 5  SGVVASVIAVSTAALS---SSSIL--------PPVSPKVWESRKTNGSDNFEPRFDGLRF 62

Query: 64 IETLVTAHR 72
          IETLVTAHR
Sbjct: 65 IETLVTAHR 62

The following BLAST results are available for this feature:

BLAST of Sed0013976 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038902353.1	3.1e-22	87.32	uncharacterized protein LOC120088987 [Benincasa hispida]	[more]
XP_022140652.1	1.5e-21	84.51	uncharacterized protein LOC111011258 [Momordica charantia]	[more]
XP_022970726.1	5.9e-21	83.33	uncharacterized protein LOC111469626 [Cucurbita maxima]	[more]
KAG6604795.1	5.9e-21	83.33	hypothetical protein SDJN03_02112, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7034915.1	2.9e-20	81.94	hypothetical protein SDJN02_01708, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Sed0013976 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0013976 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CHM8	7.5e-22	84.51	uncharacterized protein LOC111011258 OS=Momordica charantia OX=3673 GN=LOC111011...	[more]
A0A6J1I1D6	2.8e-21	83.33	uncharacterized protein LOC111469626 OS=Cucurbita maxima OX=3661 GN=LOC111469626...	[more]
E0CTD2	2.6e-14	65.38	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_12s0028g03790 PE=4 SV=...	[more]
A0A498HID0	9.1e-12	61.33	Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_031016 PE=4 SV=1	[more]
A0A6J1AJZ1	1.6e-11	61.54	uncharacterized protein LOC110418707 OS=Herrania umbratica OX=108875 GN=LOC11041...	[more]

BLAST of Sed0013976 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G28290.1	8.5e-10	50.00	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G42110.1	1.7e-05	46.38	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34683	EXPRESSED PROTEIN-RELATED	coord: 1..71

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0013976.1	Sed0013976.1	mRNA