Sed0013946 (gene) Chayote v1

Overview


Name	Sed0013946
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Precursor of CEP14
Location	LG10: 1250620 .. 1250957 (-)
RNA-Seq Expression	Sed0013946
Synteny	Sed0013946

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CATCTCTCTAAAACCTCACCGAAATCTCTCAATGGCTCGTTTTACTCTCTTCACTTTGGCTCTGCTTTTGACCCTTCTATTCACATCACAAGCCGCCAGACCCCTCCCTACCACACAGGATACCCTCTTTCTGGCTGCCCTTCCCAAGGGCACTGTCCCTTCGTCCGCTCCCAGCAAGAAAGGCCACGCCGTCCTTGTCGACCAGAAGCTCACCGCCCGACGCCTCGGAGAGTCCGTTCCCAGCCCCGGCGTCGGCCATTAGGACTCTCTCTTCTTTTTCTTTAGTTTTGGGTATTCCATTTTATTCTTTCATATCTATCTTGTTGTATAGAATACAC

mRNA sequence

CATCTCTCTAAAACCTCACCGAAATCTCTCAATGGCTCGTTTTACTCTCTTCACTTTGGCTCTGCTTTTGACCCTTCTATTCACATCACAAGCCGCCAGACCCCTCCCTACCACACAGGATACCCTCTTTCTGGCTGCCCTTCCCAAGGGCACTGTCCCTTCGTCCGCTCCCAGCAAGAAAGGCCACGCCGTCCTTGTCGACCAGAAGCTCACCGCCCGACGCCTCGGAGAGTCCGTTCCCAGCCCCGGCGTCGGCCATTAGGACTCTCTCTTCTTTTTCTTTAGTTTTGGGTATTCCATTTTATTCTTTCATATCTATCTTGTTGTATAGAATACAC

Coding sequence (CDS)

ATGGCTCGTTTTACTCTCTTCACTTTGGCTCTGCTTTTGACCCTTCTATTCACATCACAAGCCGCCAGACCCCTCCCTACCACACAGGATACCCTCTTTCTGGCTGCCCTTCCCAAGGGCACTGTCCCTTCGTCCGCTCCCAGCAAGAAAGGCCACGCCGTCCTTGTCGACCAGAAGCTCACCGCCCGACGCCTCGGAGAGTCCGTTCCCAGCCCCGGCGTCGGCCATTAG

Protein sequence

MARFTLFTLALLLTLLFTSQAARPLPTTQDTLFLAALPKGTVPSSAPSKKGHAVLVDQKLTARRLGESVPSPGVGH

Homology

[Close]

BLAST of Sed0013946 vs. NCBI nr
Match: KAG7026512.1 (Precursor of CEP14, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 100.5 bits (249), Expect = 6.5e-18
Identity = 60/82 (73.17%), Postives = 64/82 (78.05%), Query Frame = 0


Query: 2  ARFTLFTLALLLTLLF-----TSQAARPLPTTQD--TLFLAALPKGTVPSSAPSKKGHAV 61
          ARFTL T  LLL LLF     TS AAR LPTT    +LFLAALPKGTVPSSAPSKK HA+
Sbjct: 3  ARFTLITCPLLLLLLFASSALTSHAARLLPTTPSPHSLFLAALPKGTVPSSAPSKKAHAL 62

Query: 62 LVDQKLTARRLGESVPSPGVGH 77
          L+DQKLTAR L ESVPSPG+GH
Sbjct: 63 LLDQKLTARHLVESVPSPGIGH 84

[Close]

BLAST of Sed0013946 vs. NCBI nr
Match: KAG7034658.1 (Precursor of CEP14, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 93.6 bits (231), Expect = 7.9e-16
Identity = 56/81 (69.14%), Postives = 63/81 (77.78%), Query Frame = 0


Query: 1  MARFTLFTLALLLTLLF-----TSQAARPLPTTQDTLFLAALPKGTVPSSAPSKKGHAVL 60
          MA F L T  L+LTLLF     TS AAR L T  D+LFLAALPKGTVPSS PSKKGHA++
Sbjct: 1  MACFKLITWPLILTLLFASSAPTSHAARLLRT--DSLFLAALPKGTVPSSTPSKKGHAMV 60

Query: 61 VDQKLTARRLGESVPSPGVGH 77
          +DQKLTAR L +SVPSPG+GH
Sbjct: 61 LDQKLTARHLVQSVPSPGIGH 79

[Close]

BLAST of Sed0013946 vs. NCBI nr
Match: XP_028764797.1 (precursor of CEP14 [Prosopis alba])

HSP 1 Score: 74.7 bits (182), Expect = 3.8e-10
Identity = 50/98 (51.02%), Postives = 61/98 (62.24%), Query Frame = 0


Query: 1   MARFTLFTLALLLTLLFTS--------------QAARPL--PTTQDTLFLAALPKGTVPS 60
           MARF  FT  L+ ++L  S              Q +RP+  P ++D+LFL+ALPKGTVPS
Sbjct: 31  MARF--FTFLLIFSVLSASFCSFSEARKLRVGGQRSRPIVTPPSRDSLFLSALPKGTVPS 90

Query: 61  SAPSKKGHAVLVDQKLTAR------RLGESVPSPGVGH 77
           S PSKKGHA +VD+KL AR      RL  SVPSPG GH
Sbjct: 91  STPSKKGHAAVVDEKLVARHLIVMDRLLRSVPSPGAGH 126

[Close]

BLAST of Sed0013946 vs. NCBI nr
Match: XP_027348625.1 (precursor of CEP14 [Abrus precatorius])

HSP 1 Score: 73.9 bits (180), Expect = 6.5e-10
Identity = 38/58 (65.52%), Postives = 45/58 (77.59%), Query Frame = 0


Query: 26 PTTQDTLFLAALPKGTVPSSAPSKKGHAVLVDQKLTARR-------LGESVPSPGVGH 77
          P+++D+LFL+ALPKGTVP S+PSKKGH V VD+KLTAR        L  SVPSPGVGH
Sbjct: 40 PSSRDSLFLSALPKGTVPPSSPSKKGHVVEVDEKLTARHLISIDRVLLRSVPSPGVGH 97

[Close]

BLAST of Sed0013946 vs. NCBI nr
Match: KAF7803270.1 (precursor of CEP14 [Senna tora])

HSP 1 Score: 73.6 bits (179), Expect = 8.5e-10
Identity = 38/55 (69.09%), Postives = 43/55 (78.18%), Query Frame = 0


Query: 28 TQDTLFLAALPKGTVPSSAPSKKGHAVLVDQKLTAR------RLGESVPSPGVGH 77
          ++D+LFL ALPKGTVPSS PS+KGHAV+VDQKL AR      RL  SVPSPG GH
Sbjct: 44 SRDSLFLTALPKGTVPSSTPSRKGHAVVVDQKLIARHLIALDRLLRSVPSPGAGH 98

[Close]

BLAST of Sed0013946 vs. ExPASy Swiss-Prot
Match: Q52K95 (Precursor of CEP14 OS=Arabidopsis thaliana OX=3702 GN=CEP14 PE=2 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.4e-07
Identity = 30/58 (51.72%), Postives = 36/58 (62.07%), Query Frame = 0


Query: 25  LPTTQDTLFLAALPKGTVPSSAPSKKGHAVLVDQKLTARRLG------ESVPSPGVGH 77
           +P    T  L+ALPKG +P+S PSKKGHA +   KL +R L        SVPSPGVGH
Sbjct: 50  MPHVTKTSTLSALPKGKIPNSTPSKKGHAAVFAGKLRSRHLSTVDRYLRSVPSPGVGH 107

[Close]

BLAST of Sed0013946 vs. ExPASy Swiss-Prot
Match: Q9FZ54 (Precursor of CEP13 OS=Arabidopsis thaliana OX=3702 GN=CEP13 PE=2 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 8.5e-05
Identity = 40/90 (44.44%), Postives = 50/90 (55.56%), Query Frame = 0


Query: 3  RFTLFTLALLLTL----LFTSQAARPLPT--TQDTLFLAALPKGTVPSSAPSKKGHAVL- 62
          R ++  + LL+ +    L +SQA + L    T   LFL+ALPKG VP S PS KGH    
Sbjct: 5  RISISMICLLILIVGFVLQSSQARKVLVPYGTSKGLFLSALPKGNVPPSGPSDKGHTSPP 64

Query: 63 --VDQKLTA-------RRLGESVPSPGVGH 77
             DQ++         RRL ESVPSPGVGH
Sbjct: 65 DDTDQRMVPENSPEIYRRL-ESVPSPGVGH 93

[Close]

BLAST of Sed0013946 vs. ExPASy TrEMBL
Match: A0A0A0KKF2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G519990 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 2.3e-13
Identity = 50/85 (58.82%), Postives = 61/85 (71.76%), Query Frame = 0


Query: 1  MARFTLFTLALLLTLLF-----TSQAARPLPT----TQDTLFLAALPKGTVPSSAPSKKG 60
          M RFT  T +L+L LLF     TS AAR LPT    + +TLFL ALPKGT+P+S+PSKK 
Sbjct: 1  MPRFTFITFSLILALLFAFSAPTSLAARLLPTNTMPSPNTLFLTALPKGTIPTSSPSKKV 60

Query: 61 HAVLVDQKLTARRLGESVPSPGVGH 77
          H++L+   LTAR L +SVPSPGVGH
Sbjct: 61 HSMLLHHNLTARHLVQSVPSPGVGH 85

[Close]

BLAST of Sed0013946 vs. ExPASy TrEMBL
Match: A0A7N2LQP2 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.2e-09
Identity = 40/68 (58.82%), Postives = 49/68 (72.06%), Query Frame = 0


Query: 15 LLFTSQAARPLPTTQDTLFLAALPKGTVPSSAPSKKGHAVLVDQKLTAR------RLGES 74
          LL   ++ + + +  D+LFL+ALPKGTVPSS PSKKGHAV VD+KL AR      R+  S
Sbjct: 27 LLDVKESKKRVYSLSDSLFLSALPKGTVPSSTPSKKGHAVEVDEKLIARHLISIDRILGS 86

Query: 75 VPSPGVGH 77
          VPSPGVGH
Sbjct: 87 VPSPGVGH 94

[Close]

BLAST of Sed0013946 vs. ExPASy TrEMBL
Match: A0A2N9HNI2 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS41175 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.6e-09
Identity = 36/63 (57.14%), Postives = 46/63 (73.02%), Query Frame = 0


Query: 20 QAARPLPTTQDTLFLAALPKGTVPSSAPSKKGHAVLVDQKLTARRLG------ESVPSPG 77
          +  + +P+ +D LFL+ALPKGTVPSS PSKKGHAV VD+KL+   +       +SVPSPG
Sbjct: 33 EGKKGVPSLRDRLFLSALPKGTVPSSTPSKKGHAVEVDEKLSRHLISINDRNLQSVPSPG 92

[Close]

BLAST of Sed0013946 vs. ExPASy TrEMBL
Match: A0A438HH69 (Precursor of CEP14 OS=Vitis vinifera OX=29760 GN=CEP14_0 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 3.5e-09
Identity = 39/71 (54.93%), Postives = 49/71 (69.01%), Query Frame = 0


Query: 12 LLTLLFTSQAARPLPTTQDTLFLAALPKGTVPSSAPSKKGHAVLVDQKLTARRLG----- 71
          LL +   S   + +P  + +L LAALPKGTVP+S+PSKKGHA++VD+KL AR L      
Sbjct: 27 LLDMEEDSHNKKSIPALEASLVLAALPKGTVPASSPSKKGHAMVVDEKLIARHLAVVDRI 86

Query: 72 -ESVPSPGVGH 77
            SVPSPGVGH
Sbjct: 87 LRSVPSPGVGH 97

[Close]

BLAST of Sed0013946 vs. ExPASy TrEMBL
Match: A0A166CTC8 (Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_005145 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 3.5e-09
Identity = 34/59 (57.63%), Postives = 46/59 (77.97%), Query Frame = 0


Query: 24 PLPTTQDTLFLAALPKGTVPSSAPSKKGHAVLVDQKLTARRLG------ESVPSPGVGH 77
          P P+  D+L+L++LPKGTVP+SAP+KKGH+++VD+KL AR L        SVPSPGVG+
Sbjct: 41 PPPSVPDSLYLSSLPKGTVPNSAPTKKGHSLIVDEKLIARHLAAIDRILRSVPSPGVGN 99

[Close]

BLAST of Sed0013946 vs. TAIR 10
Match: AT1G29290.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 18 Blast hits to 18 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 56.6 bits (135), Expect = 1.0e-08
Identity = 30/58 (51.72%), Postives = 36/58 (62.07%), Query Frame = 0


Query: 25  LPTTQDTLFLAALPKGTVPSSAPSKKGHAVLVDQKLTARRLG------ESVPSPGVGH 77
           +P    T  L+ALPKG +P+S PSKKGHA +   KL +R L        SVPSPGVGH
Sbjct: 50  MPHVTKTSTLSALPKGKIPNSTPSKKGHAAVFAGKLRSRHLSTVDRYLRSVPSPGVGH 107

[Close]

BLAST of Sed0013946 vs. TAIR 10
Match: AT1G16950.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: stamen; EXPRESSED DURING: 4 anthesis; Has 17 Blast hits to 17 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 47.4 bits (111), Expect = 6.1e-06
Identity = 40/90 (44.44%), Postives = 50/90 (55.56%), Query Frame = 0


Query: 3  RFTLFTLALLLTL----LFTSQAARPLPT--TQDTLFLAALPKGTVPSSAPSKKGHAVL- 62
          R ++  + LL+ +    L +SQA + L    T   LFL+ALPKG VP S PS KGH    
Sbjct: 5  RISISMICLLILIVGFVLQSSQARKVLVPYGTSKGLFLSALPKGNVPPSGPSDKGHTSPP 64

Query: 63 --VDQKLTA-------RRLGESVPSPGVGH 77
             DQ++         RRL ESVPSPGVGH
Sbjct: 65 DDTDQRMVPENSPEIYRRL-ESVPSPGVGH 93

The following BLAST results are available for this feature:

BLAST of Sed0013946 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7026512.1	6.5e-18	73.17	Precursor of CEP14, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG7034658.1	7.9e-16	69.14	Precursor of CEP14, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_028764797.1	3.8e-10	51.02	precursor of CEP14 [Prosopis alba]	[more]
XP_027348625.1	6.5e-10	65.52	precursor of CEP14 [Abrus precatorius]	[more]
KAF7803270.1	8.5e-10	69.09	precursor of CEP14 [Senna tora]	[more]

BLAST of Sed0013946 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q52K95	1.4e-07	51.72	Precursor of CEP14 OS=Arabidopsis thaliana OX=3702 GN=CEP14 PE=2 SV=1	[more]
Q9FZ54	8.5e-05	44.44	Precursor of CEP13 OS=Arabidopsis thaliana OX=3702 GN=CEP13 PE=2 SV=1	[more]

BLAST of Sed0013946 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KKF2	2.3e-13	58.82	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G519990 PE=4 SV=1	[more]
A0A7N2LQP2	1.2e-09	58.82	Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]
A0A2N9HNI2	1.6e-09	57.14	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS41175 PE=4 SV=1	[more]
A0A438HH69	3.5e-09	54.93	Precursor of CEP14 OS=Vitis vinifera OX=29760 GN=CEP14_0 PE=4 SV=1	[more]
A0A166CTC8	3.5e-09	57.63	Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_005145 ...	[more]

BLAST of Sed0013946 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G29290.1	1.0e-08	51.72	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G16950.1	6.1e-06	44.44	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038930	Precursor of CEP13/CEP14	PANTHER	PTHR37180	PRECURSOR OF CEP14	coord: 20..76

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0013946.1	Sed0013946.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006995	cellular response to nitrogen starvation
biological_process	GO:0006970	response to osmotic stress