Sed0013921 (gene) Chayote v1

Overview


Name	Sed0013921
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Rab5-interacting
Location	LG05: 40452983 .. 40457072 (-)
RNA-Seq Expression	Sed0013921
Synteny	Sed0013921

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAATAAGGTTAGAATTCGCCAAGAACAACAAATTTCCAACAAAAAAAAAAAAAAAAAAGAAGAAGAAAAAGGCAGTAATCTTGTTCGGCGATAAACTCGAAGCTGAAGAAATCACAGGAGAGAAAGATACATTGTTGTTTTGCAGCACTATTTTTTTACGGCCAATAAATCCTGCAAATTGAAGTTGCTTCTTCATCAATCCAATCGTGTCTCCATCGTTTTCCCTGAAAACCCTAGACGAGTTTCTGTTCTTAGTGTCGCCGGAATCTAGATCTGAGCTTGCCGCAGATTCATCGATTTCTCTGTTCCTTTTAGTTTTCCGGCGACTGATTGATCGGATTATCCGGTATGAAAGAAGCGAAACCGGTTAAGTTCAATCTCCATCAGCATCAAGAGCACCCAAATGGCCACTTTGCCCCCTTCAAGCTCGCCAAATTGTTCGATCCAGAGGCCTCATGGGACAAGGTATCTAAATTTTCATGTCTTGGATTTGTATCGCATTTGTTTCTGATTGTCTCGTAAGATTTGGAATGTTTGCTGTTGCTGCTGCCTTTGCTTCCGTTGTATTGAGAAGAGATTAGGATTTTAAGCGTTCTATTGTGGTGTTCTAATACTGCAATTTCAGTAGAGTTTTTTAATTAGTGAAACGCCATGTTCATTAATTCTTGATTTAGAAAGTAAATGGAAACTGTTACTTCCAGCCACTTAAATCTTCCCACTATTTGGAGACTTAAGTTTTGATGCTTTTGAAGGAAACTTTATTGCCTAATTGCATTTTGCATCGCACCCTTCCATCTGATTCTTTGTTTTTCTGTTTATCAAATTTGTCAATAGGACCAGTTAGGAGATATTTTGCACTGGATTCGACAATCAATGGCCGTTGTTCTCGGACTGCTTTGGGGCTCCATACCCTTGGTTGGAGGCATTTGGTTTCTAATGTGAGTTGTGCATTCCAAACTTCTGAATACTCGATTACTTTGAAAGTACATATGTGTTGTTTCTATGTATAATAGCGTATTATTATATGCTAATTCGGCATTGGAGATAAGTTTTTTCCATTTTGATTATTTCTAACTAGTAACTACAGATATGCACAATCTCAAGTCTTGATGTAATTAGTGGCTTGAAGTCTCAAAAGTATGCTCCCTTGGAGGCACATATTCAAAACTTACGATTGAGCCTGATTTTGAAATCCCTTGTTGTCTACTGAGTTCAGGCTTTGAGACAGGTGTAGGTACTCTTGAGTATGTAGTGGGACAAAGTGTTGATTCCTTGATATAAATAAAAGTATTGTTGTAATTTTATTTCATTGTTTTGCATCTTTTTCCCTTTAGAATCCATTGAATGTAATGTGAATAGTGTTTAATAATAAATTTTGAGATTATAGGAGCACTATTTGGAGAAATATGATGATGGATTTGTATTATGCTGCAAATTCTTCTGTTCCTCCACAGTTTTTCTTGTTGTTGCCAAGTGCTGTAATTATTAACTATGGGAGGGTTCTTTCGCAATATAGTGGTGCTGGTTATTGATTGTACTTTGTACTACACATCAATTGTTCTTTCTTAACGTTGTATGCTAAGCAAGTAATCTTTCTTTGTTGTCCATGTTTAGTTTCCTGGTGATATCAATTGTCCTTTATTAATTAGTTTTGGATCGTACTTTAGGAGGATGATTCTTTAAGAAATATGGTGGGGGCTTTTGATTATGCCGCTTATTCAATAAATTCTTTCTTAATTTTGTTTGTAAATGCAATCTATCTTACGGTGCTAGTTTATTTTCAGTTTCCTTGTGATATCGACCAGTGCTGTATATGGATATTATGCAATGATTTTAAAAGTTGATGAAGAAGAATTTGGAGGCCATGGAGCTCTTCTCCAAGAGGGGCTTTTTGCTTCTATAACTCTCTTTCTGGTATGTTGACATCTTTTTTCTTTACTTTTGGTTTATTAAGTAATGCAATACACAATTTTTTTTTGAAACAAGGGTAACCACGCCCGCCCCAGTAATATGCAATACACAATTCAGTGAACACTTCTCTAGGAAAGGGTTTTGCTATCAACTTTAATACATGCAAGATCAGCCTATTGGTCAATGACAGCCGACTTTCTTCTCTTCTTTTTTCAGCTTGCTTGGATTCTCGTATACAGCTTGGCTCACTTTTGATCAGCAAAGAACGATTTTTCATCTATGAAATTACTTGGTGATGTTCGAACAATGAACTTAGTTATACATATACTTGATACCCTGCTCATTTGTGTTTGCTTCTAATTGACGGCACAATTTTTGTTAACATTCATGATGTTGAACATATTGATTTTAGCAAAGCAGGAAAGTTTTAGCATCTGAATGATATGTGATGATAGATTTTCAATCTCCATCTCCTTGTAGACACTTTTTTATGGAATCAACGCATCTTATTGGGGCATCAATTAATAGCTAGGTGCTTGAGGTTGAAGTTTAGCTGAACATTAACAAAGTAGTGTACATCTGATAATTGGGTTGTTGTAAGTATATTACTAGCTGGGGGTATCTTGGGATTAGTAGTAAGGGTACTAGTTGTATTTAGGCACCTCATTTCTGAATGTCTTCGTTTGTTCTGCACATCCTAAGAGAAGCCAGCAAGCAGTGTATGCCTTGGAAAATCTTTGAATGTGGTAAAAGGATACTAATCACAGTATAACATTACTGTTATTATTTTATATCTGTGAATGTTTGGGTCAGCTTGCATAGAACTCGTCTATTCTCACTGGATATATCATTTGACCCTACAATATTTGAATGTCAATGAAACTTTTAAAAAATCATTTCCCAAGCAGGGTACCAACATTAATTGAAATCATCTATTAAATTCCCAAGATTTTTTTCGCTAAAATAAGCGGTGAAATAGTACTTGATTGGAACTTGACGTTATAAAACCATTGAGAAGGAAGAAATTTCTTTTTCTTTCTTTCGCTTGGTGTAGCTTTCCTCTTTTTTTTAGGGAAAAAGGGGAAGACACGCTGCTAACTGCCAGGACATAACATCGGTACGTATTTGAATCTTTGATATATTTTTGTAGCTAACTAGCTTTTGTTGGTTGTTCTACGATTAGAAGTGGATGATTAAAATACACAACCTCTATGTTAAGAGCGTACATACTTATGTTGATTGACCTATTATTCTTGTTGGCGGGTTGTCTTAGCTTTCTTCATTAAAATCTTCCGAAGGCCTATGGTATTCTTTTCTGAAGTTCAAAGGAGAATTTTGTGATAATTTAATCAAATGACTTCAGTTTCTGTATGCTAGAAACATAGGAGATCAATAGTTTCTAAGTCCATAGTCCTTTTTTTATTCTAACATGTGATGGGTACTGATTCGTGTTGGCAATGGAGTTGCAACTTCTCGTGTCGTTTACCAGCTTAGATGATTATGCAATCTCTAAACTTTATGCTCCATGTCTGATTGTCTGAATATTCAAGAAATTGAATTGTTTATGATTACCTGCTGGAGCTTGTGGAACAATAGAAATAAAACGGAACATAATTGAAATCTGTTGGCTTCGAATGCCTTACTGGAGCATGATGTTCGTTGGAAGAGCTTCTCTGAGTTCTTATGATCAATGCTATTCGTTATTGGTAATAGCATTGATCATAGTAACTGATAGCCTCCGAATTCTGGCGTGCTGAAATTGAACATTGATGTGCTTGTACATGGGATTGCTTTCGAGGGACCACTTAGGATCAGTCACTTCAGCAACATCTTTCTGCTTTGATGGTGATTTTTCTCCCTTGTATGCTGAATACGAGGCTTTGTTGTGTGGAATGCAGAAAGTCCAACGGTAGAGTTCATTGCCTGTAGCAGTCGGATCCGATTGCGTGGGCTTAGCAATGGCGATCTAGCAGTGCAAGGGGGTATGTTCGGGGTGACGTCTGTGATAGTTTCTTGTAATACTTGGATGTCTCATTCGAATGTATCCCCAGACAATGAACTAGCTGCATTTACTTTGAGAACCAAATCCAACAAGGTCTGTATTGTCTCTAGACTTCTTGTCTTGTAGCCCCACTGGGCAATGATATTATCTAAATAAAGTTGCCATCTTATTCTAAAA

mRNA sequence

AAATAAGGTTAGAATTCGCCAAGAACAACAAATTTCCAACAAAAAAAAAAAAAAAAAAGAAGAAGAAAAAGGCAGTAATCTTGTTCGGCGATAAACTCGAAGCTGAAGAAATCACAGGAGAGAAAGATACATTGTTGTTTTGCAGCACTATTTTTTTACGGCCAATAAATCCTGCAAATTGAAGTTGCTTCTTCATCAATCCAATCGTGTCTCCATCGTTTTCCCTGAAAACCCTAGACGAGTTTCTGTTCTTAGTGTCGCCGGAATCTAGATCTGAGCTTGCCGCAGATTCATCGATTTCTCTGTTCCTTTTAGTTTTCCGGCGACTGATTGATCGGATTATCCGGTATGAAAGAAGCGAAACCGGTTAAGTTCAATCTCCATCAGCATCAAGAGCACCCAAATGGCCACTTTGCCCCCTTCAAGCTCGCCAAATTGTTCGATCCAGAGGCCTCATGGGACAAGGACCAGTTAGGAGATATTTTGCACTGGATTCGACAATCAATGGCCGTTGTTCTCGGACTGCTTTGGGGCTCCATACCCTTGGTTGGAGGCATTTGGTTTCTAATTTTCCTTGTGATATCGACCAGTGCTGTATATGGATATTATGCAATGATTTTAAAAGTTGATGAAGAAGAATTTGGAGGCCATGGAGCTCTTCTCCAAGAGGGGCTTTTTGCTTCTATAACTCTCTTTCTGCTTGCTTGGATTCTCGTATACAGCTTGGCTCACTTTTGATCAGCAAAGAACGATTTTTCATCTATGAAATTACTTGGTGATGTTCGAACAATGAACTTAGTTATACATATACTTGATACCCTGCTCATTTGTGTTTGCTTCTAATTGACGGCACAATTTTTGTTAACATTCATGATGTTGAACATATTGATTTTAGCAAAGCAGGAAAGTTTTAGCATCTGAATGATATGTGATGATAGATTTTCAATCTCCATCTCCTTGTAGACACTTTTTTATGGAATCAACGCATCTTATTGGGGCATCAATTAATAGCTAGGTGCTTGAGGTTGAAGTTTAGCTGAACATTAACAAAGTAGTGTACATCTGATAATTGGGTTGTTGTAAGTATATTACTAGCTGGGGGTATCTTGGGATTAGTAGTAAGGGTACTAGTTGTATTTAGGCACCTCATTTCTGAATGTCTTCGTTTGTTCTGCACATCCTAAGAGAAGCCAGCAAGCAGTGTATGCCTTGGAAAATCTTTGAATGTGGTAAAAGGATACTAATCACAGTATAACATTACTGTTATTATTTTATATCTGTGAATGTTTGGGTCAGCTTGCATAGAACTCGTCTATTCTCACTGGATATATCATTTGACCCTACAATATTTGAATGTCAATGAAACTTTTAAAAAATCATTTCCCAAGCAGGGTACCAACATTAATTGAAATCATCTATTAAATTCCCAAGATTTTTTTCGCTAAAATAAGCGGTGAAATAGTACTTGATTGGAACTTGACGTTATAAAACCATTGAGAAGGAAGAAATTTCTTTTTCTTTCTTTCGCTTGGTGTAGCTTTCCTCTTTTTTTTAGGGAAAAAGGGGAAGACACGCTGCTAACTGCCAGGACATAACATCGGTACGTATTTGAATCTTTGATATATTTTTGTAGCTAACTAGCTTTTGTTGGTTGTTCTACGATTAGAAGTGGATGATTAAAATACACAACCTCTATGTTAAGAGCGTACATACTTATGTTGATTGACCTATTATTCTTGTTGGCGGGTTGTCTTAGCTTTCTTCATTAAAATCTTCCGAAGGCCTATGGTATTCTTTTCTGAAGTTCAAAGGAGAATTTTGTGATAATTTAATCAAATGACTTCAGTTTCTGTATGCTAGAAACATAGGAGATCAATAGTTTCTAAGTCCATAGTCCTTTTTTTATTCTAACATGTGATGGGTACTGATTCGTGTTGGCAATGGAGTTGCAACTTCTCGTGTCGTTTACCAGCTTAGATGATTATGCAATCTCTAAACTTTATGCTCCATGTCTGATTGTCTGAATATTCAAGAAATTGAATTGTTTATGATTACCTGCTGGAGCTTGTGGAACAATAGAAATAAAACGGAACATAATTGAAATCTGTTGGCTTCGAATGCCTTACTGGAGCATGATGTTCGTTGGAAGAGCTTCTCTGAGTTCTTATGATCAATGCTATTCGTTATTGGTAATAGCATTGATCATAGTAACTGATAGCCTCCGAATTCTGGCGTGCTGAAATTGAACATTGATGTGCTTGTACATGGGATTGCTTTCGAGGGACCACTTAGGATCAGTCACTTCAGCAACATCTTTCTGCTTTGATGGTGATTTTTCTCCCTTGTATGCTGAATACGAGGCTTTGTTGTGTGGAATGCAGAAAGTCCAACGGTAGAGTTCATTGCCTGTAGCAGTCGGATCCGATTGCGTGGGCTTAGCAATGGCGATCTAGCAGTGCAAGGGGGTATGTTCGGGGTGACGTCTGTGATAGTTTCTTGTAATACTTGGATGTCTCATTCGAATGTATCCCCAGACAATGAACTAGCTGCATTTACTTTGAGAACCAAATCCAACAAGGTCTGTATTGTCTCTAGACTTCTTGTCTTGTAGCCCCACTGGGCAATGATATTATCTAAATAAAGTTGCCATCTTATTCTAAAA

Coding sequence (CDS)

ATGAAAGAAGCGAAACCGGTTAAGTTCAATCTCCATCAGCATCAAGAGCACCCAAATGGCCACTTTGCCCCCTTCAAGCTCGCCAAATTGTTCGATCCAGAGGCCTCATGGGACAAGGACCAGTTAGGAGATATTTTGCACTGGATTCGACAATCAATGGCCGTTGTTCTCGGACTGCTTTGGGGCTCCATACCCTTGGTTGGAGGCATTTGGTTTCTAATTTTCCTTGTGATATCGACCAGTGCTGTATATGGATATTATGCAATGATTTTAAAAGTTGATGAAGAAGAATTTGGAGGCCATGGAGCTCTTCTCCAAGAGGGGCTTTTTGCTTCTATAACTCTCTTTCTGCTTGCTTGGATTCTCGTATACAGCTTGGCTCACTTTTGA

Protein sequence

MKEAKPVKFNLHQHQEHPNGHFAPFKLAKLFDPEASWDKDQLGDILHWIRQSMAVVLGLLWGSIPLVGGIWFLIFLVISTSAVYGYYAMILKVDEEEFGGHGALLQEGLFASITLFLLAWILVYSLAHF

Homology

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BLAST of Sed0013921 vs. NCBI nr
Match: XP_038900616.1 (respirasome Complex Assembly Factor 1-like [Benincasa hispida])

HSP 1 Score: 250.0 bits (637), Expect = 1.1e-62
Identity = 120/129 (93.02%), Postives = 125/129 (96.90%), Query Frame = 0


Query: 1   MKEAKPVKFNLHQHQEHPNGHFAPFKLAKLFDPEASWDKDQLGDILHWIRQSMAVVLGLL 60
           MKE+KPVKFNLHQHQ+H NGH APFKLAKLFDPEASWDKDQLGD+LHWIRQ++AVVLGLL
Sbjct: 1   MKESKPVKFNLHQHQDHQNGHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLL 60

Query: 61  WGSIPLVGGIWFLIFLVISTSAVYGYYAMILKVDEEEFGGHGALLQEGLFASITLFLLAW 120
           WGSIPLVGGIWFLIFL ISTS VYGYYAMILKVDEEEFGGHGALLQEGLFASITLFLLAW
Sbjct: 61  WGSIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGGHGALLQEGLFASITLFLLAW 120

Query: 121 ILVYSLAHF 130
           ILVYSLAHF
Sbjct: 121 ILVYSLAHF 129

[Close]

BLAST of Sed0013921 vs. NCBI nr
Match: XP_022947918.1 (uncharacterized protein C20orf24 homolog isoform X2 [Cucurbita moschata])

HSP 1 Score: 249.2 bits (635), Expect = 1.9e-62
Identity = 120/129 (93.02%), Postives = 124/129 (96.12%), Query Frame = 0


Query: 1   MKEAKPVKFNLHQHQEHPNGHFAPFKLAKLFDPEASWDKDQLGDILHWIRQSMAVVLGLL 60
           MKEA PVKFNLHQHQEH NGH APFKLAKLFDPEASWDKDQLGD+LHWIRQ++AVVLGLL
Sbjct: 1   MKEANPVKFNLHQHQEHQNGHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLL 60

Query: 61  WGSIPLVGGIWFLIFLVISTSAVYGYYAMILKVDEEEFGGHGALLQEGLFASITLFLLAW 120
           WG+IPLVGGIWFLIFL ISTS VYGYYAMILKVDEEEFGGHGALLQEGLFASITLFLLAW
Sbjct: 61  WGAIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGGHGALLQEGLFASITLFLLAW 120

Query: 121 ILVYSLAHF 130
           ILVYSLAHF
Sbjct: 121 ILVYSLAHF 129

[Close]

BLAST of Sed0013921 vs. NCBI nr
Match: XP_008464121.1 (PREDICTED: uncharacterized protein C20orf24 homolog [Cucumis melo] >XP_016903137.1 PREDICTED: uncharacterized protein C20orf24 homolog [Cucumis melo] >TYK24026.1 Rab5-interacting [Cucumis melo var. makuwa])

HSP 1 Score: 248.8 bits (634), Expect = 2.5e-62
Identity = 120/129 (93.02%), Postives = 124/129 (96.12%), Query Frame = 0


Query: 1   MKEAKPVKFNLHQHQEHPNGHFAPFKLAKLFDPEASWDKDQLGDILHWIRQSMAVVLGLL 60
           MKEAKPVKFNLHQHQ+H NGH APFKLAKL DPEASWDKDQLGD+LHWIRQ++AVVLGLL
Sbjct: 1   MKEAKPVKFNLHQHQDHQNGHLAPFKLAKLIDPEASWDKDQLGDVLHWIRQAVAVVLGLL 60

Query: 61  WGSIPLVGGIWFLIFLVISTSAVYGYYAMILKVDEEEFGGHGALLQEGLFASITLFLLAW 120
           WGSIPLVGGIWFLIFL ISTS VYGYYAMILKVDEEEFGGHGALLQEGLFASITLFLLAW
Sbjct: 61  WGSIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGGHGALLQEGLFASITLFLLAW 120

Query: 121 ILVYSLAHF 130
           ILVYSLAHF
Sbjct: 121 ILVYSLAHF 129

[Close]

BLAST of Sed0013921 vs. NCBI nr
Match: XP_023532324.1 (uncharacterized protein C20orf24 homolog isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 248.8 bits (634), Expect = 2.5e-62
Identity = 119/129 (92.25%), Postives = 124/129 (96.12%), Query Frame = 0


Query: 1   MKEAKPVKFNLHQHQEHPNGHFAPFKLAKLFDPEASWDKDQLGDILHWIRQSMAVVLGLL 60
           MKEA PVKFNLHQHQEH NGH APFKLAKLFDPEASWDKDQLGD+LHWIRQ++AVVLGLL
Sbjct: 1   MKEANPVKFNLHQHQEHQNGHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLL 60

Query: 61  WGSIPLVGGIWFLIFLVISTSAVYGYYAMILKVDEEEFGGHGALLQEGLFASITLFLLAW 120
           WG+IPLVGGIWFLIFL ISTS VYGYYAMILKVDEEEFGGHGALLQEGLFASITLFLLAW
Sbjct: 61  WGAIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGGHGALLQEGLFASITLFLLAW 120

Query: 121 ILVYSLAHF 130
           IL+YSLAHF
Sbjct: 121 ILIYSLAHF 129

[Close]

BLAST of Sed0013921 vs. NCBI nr
Match: XP_004143124.1 (uncharacterized protein RAB5IF homolog [Cucumis sativus] >KGN47142.1 hypothetical protein Csa_020819 [Cucumis sativus])

HSP 1 Score: 248.4 bits (633), Expect = 3.3e-62
Identity = 119/129 (92.25%), Postives = 124/129 (96.12%), Query Frame = 0


Query: 1   MKEAKPVKFNLHQHQEHPNGHFAPFKLAKLFDPEASWDKDQLGDILHWIRQSMAVVLGLL 60
           MKEAKPVKFNLHQHQ+H NGH APFKLAKL DPEASWDKDQLGD+LHWIRQ++AV+LGLL
Sbjct: 1   MKEAKPVKFNLHQHQDHQNGHLAPFKLAKLIDPEASWDKDQLGDVLHWIRQAVAVILGLL 60

Query: 61  WGSIPLVGGIWFLIFLVISTSAVYGYYAMILKVDEEEFGGHGALLQEGLFASITLFLLAW 120
           WGSIPLVGGIWFLIFL ISTS VYGYYAMILKVDEEEFGGHGALLQEGLFASITLFLLAW
Sbjct: 61  WGSIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGGHGALLQEGLFASITLFLLAW 120

Query: 121 ILVYSLAHF 130
           ILVYSLAHF
Sbjct: 121 ILVYSLAHF 129

[Close]

BLAST of Sed0013921 vs. ExPASy Swiss-Prot
Match: Q9CQT9 (Respirasome Complex Assembly Factor 1 OS=Mus musculus OX=10090 GN=Rab5if PE=1 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 5.7e-17
Identity = 42/112 (37.50%), Postives = 70/112 (62.50%), Query Frame = 0


Query: 19  NGHFAPFKLAKLFDPEASW-DKDQLGDILHWIRQSMAVVLGLLWGSIPLVGGIWFLIFLV 78
           NG       +K+   +A+W DKD+  D+++W RQ +A+VLG++WG +PL G +    F +
Sbjct: 17  NGALKVSVWSKVLRSDAAWDDKDEFLDVIYWFRQIIALVLGVIWGVLPLRGFLGIAGFCL 76

Query: 79  ISTSAVYGYYAMILKVDEEEFGGHGALLQEGLFASITLFLLAWILVYSLAHF 130
           I+   +Y Y++  L++DEEE+GG   L +EG   S  LF++ WI+ Y+  H+
Sbjct: 77  INAGVLYLYFSNYLQIDEEEYGGTWELTKEGFMTSFALFMVIWIIFYTAIHY 128

[Close]

BLAST of Sed0013921 vs. ExPASy Swiss-Prot
Match: Q9BUV8 (Respirasome Complex Assembly Factor 1 OS=Homo sapiens OX=9606 GN=RAB5IF PE=1 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 5.9e-14
Identity = 40/111 (36.04%), Postives = 66/111 (59.46%), Query Frame = 0


Query: 19  NGHFAPFKLAKLFDPEASW-DKDQLGDILHWIRQSMAVVLGLLWGSIPLVGGIWFLIFLV 78
           NG       +K+   +A+W DKD+  D+++W RQ +AVVLG++WG +PL G +    F +
Sbjct: 17  NGALKVSVWSKVLRSDAAWEDKDEFLDVIYWFRQIIAVVLGVIWGVLPLRGFLGIAGFCL 76

Query: 79  ISTSAVYGYYAMILKVDEEEFGGHGALLQEGLFASITLFLLAWILVYSLAH 129
           I+   +Y Y++  L++DEEE+GG   L +EG   S  LF++     ++  H
Sbjct: 77  INAGVLYLYFSNYLQIDEEEYGGTWELTKEGFMTSFALFMVCVADSFTTGH 127

[Close]

BLAST of Sed0013921 vs. ExPASy TrEMBL
Match: A0A6J1G7Y2 (uncharacterized protein C20orf24 homolog isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111451658 PE=4 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 9.3e-63
Identity = 120/129 (93.02%), Postives = 124/129 (96.12%), Query Frame = 0


Query: 1   MKEAKPVKFNLHQHQEHPNGHFAPFKLAKLFDPEASWDKDQLGDILHWIRQSMAVVLGLL 60
           MKEA PVKFNLHQHQEH NGH APFKLAKLFDPEASWDKDQLGD+LHWIRQ++AVVLGLL
Sbjct: 1   MKEANPVKFNLHQHQEHQNGHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLL 60

Query: 61  WGSIPLVGGIWFLIFLVISTSAVYGYYAMILKVDEEEFGGHGALLQEGLFASITLFLLAW 120
           WG+IPLVGGIWFLIFL ISTS VYGYYAMILKVDEEEFGGHGALLQEGLFASITLFLLAW
Sbjct: 61  WGAIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGGHGALLQEGLFASITLFLLAW 120

Query: 121 ILVYSLAHF 130
           ILVYSLAHF
Sbjct: 121 ILVYSLAHF 129

[Close]

BLAST of Sed0013921 vs. ExPASy TrEMBL
Match: A0A1S4E4J0 (uncharacterized protein C20orf24 homolog OS=Cucumis melo OX=3656 GN=LOC103502078 PE=4 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 1.2e-62
Identity = 120/129 (93.02%), Postives = 124/129 (96.12%), Query Frame = 0


Query: 1   MKEAKPVKFNLHQHQEHPNGHFAPFKLAKLFDPEASWDKDQLGDILHWIRQSMAVVLGLL 60
           MKEAKPVKFNLHQHQ+H NGH APFKLAKL DPEASWDKDQLGD+LHWIRQ++AVVLGLL
Sbjct: 1   MKEAKPVKFNLHQHQDHQNGHLAPFKLAKLIDPEASWDKDQLGDVLHWIRQAVAVVLGLL 60

Query: 61  WGSIPLVGGIWFLIFLVISTSAVYGYYAMILKVDEEEFGGHGALLQEGLFASITLFLLAW 120
           WGSIPLVGGIWFLIFL ISTS VYGYYAMILKVDEEEFGGHGALLQEGLFASITLFLLAW
Sbjct: 61  WGSIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGGHGALLQEGLFASITLFLLAW 120

Query: 121 ILVYSLAHF 130
           ILVYSLAHF
Sbjct: 121 ILVYSLAHF 129

[Close]

BLAST of Sed0013921 vs. ExPASy TrEMBL
Match: A0A5D3DK85 (Rab5-interacting OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold250G001250 PE=4 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 1.2e-62
Identity = 120/129 (93.02%), Postives = 124/129 (96.12%), Query Frame = 0


Query: 1   MKEAKPVKFNLHQHQEHPNGHFAPFKLAKLFDPEASWDKDQLGDILHWIRQSMAVVLGLL 60
           MKEAKPVKFNLHQHQ+H NGH APFKLAKL DPEASWDKDQLGD+LHWIRQ++AVVLGLL
Sbjct: 1   MKEAKPVKFNLHQHQDHQNGHLAPFKLAKLIDPEASWDKDQLGDVLHWIRQAVAVVLGLL 60

Query: 61  WGSIPLVGGIWFLIFLVISTSAVYGYYAMILKVDEEEFGGHGALLQEGLFASITLFLLAW 120
           WGSIPLVGGIWFLIFL ISTS VYGYYAMILKVDEEEFGGHGALLQEGLFASITLFLLAW
Sbjct: 61  WGSIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGGHGALLQEGLFASITLFLLAW 120

Query: 121 ILVYSLAHF 130
           ILVYSLAHF
Sbjct: 121 ILVYSLAHF 129

[Close]

BLAST of Sed0013921 vs. ExPASy TrEMBL
Match: A0A0A0KFE5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G190330 PE=4 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 1.6e-62
Identity = 119/129 (92.25%), Postives = 124/129 (96.12%), Query Frame = 0


Query: 1   MKEAKPVKFNLHQHQEHPNGHFAPFKLAKLFDPEASWDKDQLGDILHWIRQSMAVVLGLL 60
           MKEAKPVKFNLHQHQ+H NGH APFKLAKL DPEASWDKDQLGD+LHWIRQ++AV+LGLL
Sbjct: 1   MKEAKPVKFNLHQHQDHQNGHLAPFKLAKLIDPEASWDKDQLGDVLHWIRQAVAVILGLL 60

Query: 61  WGSIPLVGGIWFLIFLVISTSAVYGYYAMILKVDEEEFGGHGALLQEGLFASITLFLLAW 120
           WGSIPLVGGIWFLIFL ISTS VYGYYAMILKVDEEEFGGHGALLQEGLFASITLFLLAW
Sbjct: 61  WGSIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGGHGALLQEGLFASITLFLLAW 120

Query: 121 ILVYSLAHF 130
           ILVYSLAHF
Sbjct: 121 ILVYSLAHF 129

[Close]

BLAST of Sed0013921 vs. ExPASy TrEMBL
Match: A0A6J1D489 (uncharacterized protein C20orf24 homolog OS=Momordica charantia OX=3673 GN=LOC111017115 PE=4 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 2.7e-62
Identity = 120/129 (93.02%), Postives = 124/129 (96.12%), Query Frame = 0


Query: 1   MKEAKPVKFNLHQHQEHPNGHFAPFKLAKLFDPEASWDKDQLGDILHWIRQSMAVVLGLL 60
           MKEAKPVKFNLHQHQEH NGH APFKLAKLFD EASWDKDQLGD+LHWIRQ++AVVLGLL
Sbjct: 1   MKEAKPVKFNLHQHQEHQNGHLAPFKLAKLFDSEASWDKDQLGDVLHWIRQAVAVVLGLL 60

Query: 61  WGSIPLVGGIWFLIFLVISTSAVYGYYAMILKVDEEEFGGHGALLQEGLFASITLFLLAW 120
           WGSIPLVGGIWF+IFLVISTS VYGYYAMILKVDEEEFGGHGALLQEGLFASITLFLLAW
Sbjct: 61  WGSIPLVGGIWFIIFLVISTSIVYGYYAMILKVDEEEFGGHGALLQEGLFASITLFLLAW 120

Query: 121 ILVYSLAHF 130
            LVYSLAHF
Sbjct: 121 TLVYSLAHF 129

[Close]

BLAST of Sed0013921 vs. TAIR 10
Match: AT5G59410.1 (Rab5-interacting family protein )

HSP 1 Score: 204.5 bits (519), Expect = 5.0e-53
Identity = 98/130 (75.38%), Postives = 111/130 (85.38%), Query Frame = 0


Query: 1   MKEAKPVKFN-LHQHQEHPNGHFAPFKLAKLFDPEASWDKDQLGDILHWIRQSMAVVLGL 60
           MKE+K  K N L Q + H N H +P KLAKLFDP+ASWDKDQLGD+LHWIRQ + ++ GL
Sbjct: 1   MKESKSAKLNQLQQQENHQNAHLSPSKLAKLFDPDASWDKDQLGDVLHWIRQVVGLISGL 60

Query: 61  LWGSIPLVGGIWFLIFLVISTSAVYGYYAMILKVDEEEFGGHGALLQEGLFASITLFLLA 120
           LWGSIPLVGGIW ++FL IS+  VYGYYAMILKVDEE+FGGH ALLQEGLFAS+TLFLLA
Sbjct: 61  LWGSIPLVGGIWIILFLAISSGIVYGYYAMILKVDEEDFGGHAALLQEGLFASLTLFLLA 120

Query: 121 WILVYSLAHF 130
           WILVYSLAHF
Sbjct: 121 WILVYSLAHF 130

[Close]

BLAST of Sed0013921 vs. TAIR 10
Match: AT2G29020.1 (Rab5-interacting family protein )

HSP 1 Score: 182.6 bits (462), Expect = 2.1e-46
Identity = 88/133 (66.17%), Postives = 104/133 (78.20%), Query Frame = 0


Query: 1   MKEAKPVKFNLHQHQE----HPNGHFAPFKLAKLFDPEASWDKDQLGDILHWIRQSMAVV 60
           MKE K  K +  Q Q     H N H   F  AKLFD EASWDKDQLGD+LHWIRQ + ++
Sbjct: 1   MKEGKSSKSSSQQEQHEQIYHQNSHLGSFNFAKLFDSEASWDKDQLGDVLHWIRQVVGLL 60

Query: 61  LGLLWGSIPLVGGIWFLIFLVISTSAVYGYYAMILKVDEEEFGGHGALLQEGLFASITLF 120
            GLLWG+IPLVGGIW L+FL IS+  VYGYYA++LK+DEE+FGGH ALLQ+GLFAS++LF
Sbjct: 61  CGLLWGAIPLVGGIWLLLFLAISSGIVYGYYALVLKIDEEDFGGHAALLQDGLFASLSLF 120

Query: 121 LLAWILVYSLAHF 130
           LLAWILVYSL+ F
Sbjct: 121 LLAWILVYSLSSF 133

The following BLAST results are available for this feature:

BLAST of Sed0013921 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038900616.1	1.1e-62	93.02	respirasome Complex Assembly Factor 1-like [Benincasa hispida]	[more]
XP_022947918.1	1.9e-62	93.02	uncharacterized protein C20orf24 homolog isoform X2 [Cucurbita moschata]	[more]
XP_008464121.1	2.5e-62	93.02	PREDICTED: uncharacterized protein C20orf24 homolog [Cucumis melo] >XP_016903137...	[more]
XP_023532324.1	2.5e-62	92.25	uncharacterized protein C20orf24 homolog isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_004143124.1	3.3e-62	92.25	uncharacterized protein RAB5IF homolog [Cucumis sativus] >KGN47142.1 hypothetica...	[more]

BLAST of Sed0013921 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9CQT9	5.7e-17	37.50	Respirasome Complex Assembly Factor 1 OS=Mus musculus OX=10090 GN=Rab5if PE=1 SV...	[more]
Q9BUV8	5.9e-14	36.04	Respirasome Complex Assembly Factor 1 OS=Homo sapiens OX=9606 GN=RAB5IF PE=1 SV=...	[more]

BLAST of Sed0013921 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G7Y2	9.3e-63	93.02	uncharacterized protein C20orf24 homolog isoform X2 OS=Cucurbita moschata OX=366...	[more]
A0A1S4E4J0	1.2e-62	93.02	uncharacterized protein C20orf24 homolog OS=Cucumis melo OX=3656 GN=LOC103502078...	[more]
A0A5D3DK85	1.2e-62	93.02	Rab5-interacting OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold250G001...	[more]
A0A0A0KFE5	1.6e-62	92.25	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G190330 PE=4 SV=1	[more]
A0A6J1D489	2.7e-62	93.02	uncharacterized protein C20orf24 homolog OS=Momordica charantia OX=3673 GN=LOC11...	[more]

BLAST of Sed0013921 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G59410.1	5.0e-53	75.38	Rab5-interacting family protein	[more]
AT2G29020.1	2.1e-46	66.17	Rab5-interacting family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR029008	Rab5-interacting protein family	PFAM	PF07019	Rab5ip	coord: 45..124 e-value: 1.2E-13 score: 51.4
IPR010742	Rab5-interacting protein	PANTHER	PTHR12906	PROTEIN C20ORF24 RAB5-INTERACTING PROTEIN	coord: 1..129
None	No IPR available	PANTHER	PTHR12906:SF2	BNAA04G16800D PROTEIN	coord: 1..129

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0013921.1	Sed0013921.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006996	organelle organization
cellular_component	GO:0016021	integral component of membrane