Sed0013916 (gene) Chayote v1

Overview


Name	Sed0013916
Type	gene
Organism	Sechium edule (Chayote v1)
Description	U5 small nuclear ribonucleoprotein 40 kDa protein
Location	LG06: 42339371 .. 42342235 (-)
RNA-Seq Expression	Sed0013916
Synteny	Sed0013916

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CACAGCCGCCCCTTTCTCACACATTTCTTTCTCGGTCTCTTCATCTCTTTCTCTGTTTTGACAAAATCTGTGTATTCAAAGAACTTCATTCGGTCTTTGAAACCTATTTTCTGTGCAATTCATCTTCGACGACTCGTGGATAGTATAAAGGGTATGGTTTTTGTTTTTGAATCGTTCCGATACGCAGTTGAATCGTTTCTTTTTCACTCTGAAAACGTCCGATTCGGGCGATTTGCGATTCAAAATTACGATGTGAATCGATTTCTTCACCATTCGTTTCGAATCGTACGTTTTGTATGGCTGATTGTTCTGTGTTGGAAATGCAACACTTCAGAATTCTTATCCCCCGTCCTCATACTACATTCCTTGTTTTTTGATGCAATTTAGTCGAAGAAACGTAGTATTTGTTTCTTGAGCTTCTAAAAAATTAGCTGGGTTTGATAACCATTTGATTTTTTGATATTAAATTTGATCTTATTTCTACTCAATTTTTTTCCTACATGTGCTCTATCTTTCTTAGAATGTTTAGGTGAATACTAACCAAATTTCAAAAACAAAAACAAGCTTGTGTAAGCTCATTTTTTTGGTTTCCAAATTTTAGTTTTATTTCTTAAAATATAGAAAAGATGTAGATATCCAAATAAGAAAAAAAAAGTAATGGTCAATACCATGGTAAGGTAGGGGTTGTAGGTTTAAATTTCAAAAACAAAAAACGAAAAACAAAATGGTTTGATAGGTTATCAAACGGGGCCTTAGATGTTGGTTGATGGGTTTGGTTTTTTTAGATTTGTTGATCGGGTTTCTGTTAGATCATTTCCTAAGGTTTTATATTTTGGTTCCTTTTTAATTGTTGGAGAGCAATTGAGTCGGGATTTGGGAGTAGGGGAGATGCAGCTGCCCTTGCTCACTATGATTGTGTGGCTGAGTATTTTTGGTGATTATAATAGGAGGTTTGAAGACTTGGGCTTTGAGGGTATGCTCCCCTCAAGGTCTCGACGAGTTTTCCCGGTGACATTATTCCTTCGATGTCTCCGGTGCCTGGCCTAGGGACGGGCGTGGTTACCTTATTTCAAAAAAAAAAAGGAGGTTTGATGTGGAATGTTTATTCCTATACAAATCAACCTTGTTTTAAGAAAACGAATATAATTTTAATAGATTTAGCCTTGGTACGTGTCTCCAAGGCTAAGCCTAATTGGTATAGGCCTGGGATCTTCGAGGCGTGTTCCTTTGGAGTTCTCAAGTTCAAAGCTTACATTGGAGCTTAATTGTAAACTTTCTTGTTTTACGGGTCTGGGCCTAGGCCTTGGGAGTGGGACAAGTATTTAGTTGGGCGAAGCTCTAATTCTCAGTTATAAAGAAAGGAGTAAGAATGTATCCTTAATTCTCAGTTATCAAGAAAGGAGTAAGAATGTATCCTTGCATATCAGAAGTAAATCTGTTTTCAAGTGATATAGTGGTGTGCAATTTAAGAGTTGAAGTCCTGTCGTGTTGCCTTATGTCTTTTTTCTGTTTCTCGTTCTATTAGTTTGCACGGCATAATTGATTTTTTTTCATTTCAGAGCCGGAGTCTGATTTTAGGCAAAATTCAAGATGCAAATACCTTCAGGAGAGAATGCTTTGGCTGCAGTTGGTCCTCGGCCAATGGAGTGGTCAACTGTTCCATATAATGCACCTCAAGGACCTGGGCCAAACGGTAAAGAACGAACGTCAAGTCTGGAGTCGCCGATCATGTTGTTGACAGGCCATCAGAGTGCTATATATACATTGAAATTTAATCCAACTGGAAGTGTGATTGCATCGGGGTCTCATGACCGGGAAATTTTCCTATGGAACGTACATGGGGATTGCAAAAACTATATGGTTTTGAGAGGGCATAAGAATGCAGTTCTAGATCTTCATTGGACTACTGATGGATCTCAGATAGTTAGTGCCAGCCCTGATAAAACACTGAGAGCATGGGATGTCGAAACCGGAAAACAAATAAAGAAGATGGCAGAGCACTCCTCCTTTGTCAATTCATGTTGTCCAACAAGAAGAGGGCCACCGCTAATTGTCAGCGGATCCGATGATGGAACTGCAAAACTCTGGGATATGCGTCAAAGGGGTGCCATTCAAACATTTCCAGATAAGTATCAGATTACAGCAGTAAGTTTCTCGGATGCCTCGGATAAGATCTTCACTGGTGGAATAGACAACGACGTTAAGGTCTGGGATTTGCGCAAAGGTGAAGTGATGATGACACTCCAAGGTCATCAAGATATGATAACTGGTATGCAGTTGAGTCCTGATGGTTCTTATCTCCTCACTAATGGAATGGACTGCAAGCTCTGCATATGGGATATGCGCCCGTATGCGCCTCAAAACCGATGCGTGAAGATATTCGAAGGGCACCAACATAACTTCGAAAAGAATCTACTCAAATGTAGCTGGTCTCCGGATGGTAGCAAGGTCACTGCAGGTAGTTCAGATCGGATGGTCTACGTATGGGATACAACTTCTCGACGAATCTTGTACAAGCTTCCTGGCCATACTGGATCCGTGAATGAGAGTGTCTTCCATCCGAGCGAGCCTATTGTTGGATCTTGCAGTAGTGATAAACAGGTATATCTTGGAGAGATTTAATCTACATTTGAAATGATCAATCTGTACTGTAATGTTTTTATCAATTAGTCGATTGCCTCTATTTCCCAATGTAATTGACCCACAAAAAGGTTAGTCGTTTTTTGGGCGTGAAATTCAGGCTGACATTTCTGGGAACTGTAAACATTTTCATGAGAAAAACTTGCATTTGCAACTTTGTTTCCATATTATGAATTTGTGGAATTACTGCTACGCTTTTCTCGCAGCTACAACATTGTACTTGTT

mRNA sequence

CACAGCCGCCCCTTTCTCACACATTTCTTTCTCGGTCTCTTCATCTCTTTCTCTGTTTTGACAAAATCTGTGTATTCAAAGAACTTCATTCGGTCTTTGAAACCTATTTTCTGTGCAATTCATCTTCGACGACTCGTGGATAGTATAAAGGAGCCGGAGTCTGATTTTAGGCAAAATTCAAGATGCAAATACCTTCAGGAGAGAATGCTTTGGCTGCAGTTGGTCCTCGGCCAATGGAGTGGTCAACTGTTCCATATAATGCACCTCAAGGACCTGGGCCAAACGGTAAAGAACGAACGTCAAGTCTGGAGTCGCCGATCATGTTGTTGACAGGCCATCAGAGTGCTATATATACATTGAAATTTAATCCAACTGGAAGTGTGATTGCATCGGGGTCTCATGACCGGGAAATTTTCCTATGGAACGTACATGGGGATTGCAAAAACTATATGGTTTTGAGAGGGCATAAGAATGCAGTTCTAGATCTTCATTGGACTACTGATGGATCTCAGATAGTTAGTGCCAGCCCTGATAAAACACTGAGAGCATGGGATGTCGAAACCGGAAAACAAATAAAGAAGATGGCAGAGCACTCCTCCTTTGTCAATTCATGTTGTCCAACAAGAAGAGGGCCACCGCTAATTGTCAGCGGATCCGATGATGGAACTGCAAAACTCTGGGATATGCGTCAAAGGGGTGCCATTCAAACATTTCCAGATAAGTATCAGATTACAGCAGTAAGTTTCTCGGATGCCTCGGATAAGATCTTCACTGGTGGAATAGACAACGACGTTAAGGTCTGGGATTTGCGCAAAGGTGAAGTGATGATGACACTCCAAGGTCATCAAGATATGATAACTGGTATGCAGTTGAGTCCTGATGGTTCTTATCTCCTCACTAATGGAATGGACTGCAAGCTCTGCATATGGGATATGCGCCCGTATGCGCCTCAAAACCGATGCGTGAAGATATTCGAAGGGCACCAACATAACTTCGAAAAGAATCTACTCAAATGTAGCTGGTCTCCGGATGGTAGCAAGGTCACTGCAGGTAGTTCAGATCGGATGGTCTACGTATGGGATACAACTTCTCGACGAATCTTGTACAAGCTTCCTGGCCATACTGGATCCGTGAATGAGAGTGTCTTCCATCCGAGCGAGCCTATTGTTGGATCTTGCAGTAGTGATAAACAGGTATATCTTGGAGAGATTTAATCTACATTTGAAATGATCAATCTGTACTGTAATGTTTTTATCAATTAGTCGATTGCCTCTATTTCCCAATGTAATTGACCCACAAAAAGGTTAGTCGTTTTTTGGGCGTGAAATTCAGGCTGACATTTCTGGGAACTGTAAACATTTTCATGAGAAAAACTTGCATTTGCAACTTTGTTTCCATATTATGAATTTGTGGAATTACTGCTACGCTTTTCTCGCAGCTACAACATTGTACTTGTT

Coding sequence (CDS)

ATGCAAATACCTTCAGGAGAGAATGCTTTGGCTGCAGTTGGTCCTCGGCCAATGGAGTGGTCAACTGTTCCATATAATGCACCTCAAGGACCTGGGCCAAACGGTAAAGAACGAACGTCAAGTCTGGAGTCGCCGATCATGTTGTTGACAGGCCATCAGAGTGCTATATATACATTGAAATTTAATCCAACTGGAAGTGTGATTGCATCGGGGTCTCATGACCGGGAAATTTTCCTATGGAACGTACATGGGGATTGCAAAAACTATATGGTTTTGAGAGGGCATAAGAATGCAGTTCTAGATCTTCATTGGACTACTGATGGATCTCAGATAGTTAGTGCCAGCCCTGATAAAACACTGAGAGCATGGGATGTCGAAACCGGAAAACAAATAAAGAAGATGGCAGAGCACTCCTCCTTTGTCAATTCATGTTGTCCAACAAGAAGAGGGCCACCGCTAATTGTCAGCGGATCCGATGATGGAACTGCAAAACTCTGGGATATGCGTCAAAGGGGTGCCATTCAAACATTTCCAGATAAGTATCAGATTACAGCAGTAAGTTTCTCGGATGCCTCGGATAAGATCTTCACTGGTGGAATAGACAACGACGTTAAGGTCTGGGATTTGCGCAAAGGTGAAGTGATGATGACACTCCAAGGTCATCAAGATATGATAACTGGTATGCAGTTGAGTCCTGATGGTTCTTATCTCCTCACTAATGGAATGGACTGCAAGCTCTGCATATGGGATATGCGCCCGTATGCGCCTCAAAACCGATGCGTGAAGATATTCGAAGGGCACCAACATAACTTCGAAAAGAATCTACTCAAATGTAGCTGGTCTCCGGATGGTAGCAAGGTCACTGCAGGTAGTTCAGATCGGATGGTCTACGTATGGGATACAACTTCTCGACGAATCTTGTACAAGCTTCCTGGCCATACTGGATCCGTGAATGAGAGTGTCTTCCATCCGAGCGAGCCTATTGTTGGATCTTGCAGTAGTGATAAACAGGTATATCTTGGAGAGATTTAA

Protein sequence

MQIPSGENALAAVGPRPMEWSTVPYNAPQGPGPNGKERTSSLESPIMLLTGHQSAIYTLKFNPTGSVIASGSHDREIFLWNVHGDCKNYMVLRGHKNAVLDLHWTTDGSQIVSASPDKTLRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYVWDTTSRRILYKLPGHTGSVNESVFHPSEPIVGSCSSDKQVYLGEI

Homology

[Close]

BLAST of Sed0013916 vs. NCBI nr
Match: XP_022945717.1 (U5 small nuclear ribonucleoprotein 40 kDa protein [Cucurbita moschata] >KAG6573599.1 U5 small nuclear ribonucleoprotein 40 kDa protein, partial [Cucurbita argyrosperma subsp. sororia] >KAG7012682.1 U5 small nuclear ribonucleoprotein 40 kDa protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 717.2 bits (1850), Expect = 6.6e-203
Identity = 336/344 (97.67%), Postives = 340/344 (98.84%), Query Frame = 0


Query: 1   MQIPS-GENALAAVGPRPMEWSTVPYNAPQGPGPNGKERTSSLESPIMLLTGHQSAIYTL 60
           MQ+PS GENALA VGPRPMEWSTVPYNAPQGPGPNGK+RTSSLESPIMLLTGHQSAIYTL
Sbjct: 1   MQVPSGGENALATVGPRPMEWSTVPYNAPQGPGPNGKQRTSSLESPIMLLTGHQSAIYTL 60

Query: 61  KFNPTGSVIASGSHDREIFLWNVHGDCKNYMVLRGHKNAVLDLHWTTDGSQIVSASPDKT 120
           KFNP GSVIASGSHD+EIFLWNVHGDCKNYMVLRGHKNAVLDLHWTTDGSQIVSASPDKT
Sbjct: 61  KFNPAGSVIASGSHDKEIFLWNVHGDCKNYMVLRGHKNAVLDLHWTTDGSQIVSASPDKT 120

Query: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180
           LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD
Sbjct: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180

Query: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240
           KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT
Sbjct: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240

Query: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYVW 300
           NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYVW
Sbjct: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYVW 300

Query: 301 DTTSRRILYKLPGHTGSVNESVFHPSEPIVGSCSSDKQVYLGEI 344
           DTTSRRILYKLPGHTGSVNE VFHPSEPIVGSCSSDKQ+YLGEI
Sbjct: 301 DTTSRRILYKLPGHTGSVNECVFHPSEPIVGSCSSDKQIYLGEI 344

[Close]

BLAST of Sed0013916 vs. NCBI nr
Match: XP_023542336.1 (U5 small nuclear ribonucleoprotein 40 kDa protein [Cucurbita pepo subsp. pepo])

HSP 1 Score: 715.7 bits (1846), Expect = 1.9e-202
Identity = 335/344 (97.38%), Postives = 340/344 (98.84%), Query Frame = 0


Query: 1   MQIPS-GENALAAVGPRPMEWSTVPYNAPQGPGPNGKERTSSLESPIMLLTGHQSAIYTL 60
           MQ+PS GENALA VGPRPMEWSTVPYNAPQGPGPNGK+RTSSLESPIMLLTGHQSAIYTL
Sbjct: 1   MQVPSGGENALATVGPRPMEWSTVPYNAPQGPGPNGKQRTSSLESPIMLLTGHQSAIYTL 60

Query: 61  KFNPTGSVIASGSHDREIFLWNVHGDCKNYMVLRGHKNAVLDLHWTTDGSQIVSASPDKT 120
           KFNP GSVIASGSHD+EIFLWNVHGDCKNYMVLRGHKNAVLDLHWTTDGSQIVSASPDKT
Sbjct: 61  KFNPAGSVIASGSHDKEIFLWNVHGDCKNYMVLRGHKNAVLDLHWTTDGSQIVSASPDKT 120

Query: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180
           LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD
Sbjct: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180

Query: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240
           KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVM+TLQGHQDMITGMQLSPDGSYLLT
Sbjct: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMITLQGHQDMITGMQLSPDGSYLLT 240

Query: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYVW 300
           NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYVW
Sbjct: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYVW 300

Query: 301 DTTSRRILYKLPGHTGSVNESVFHPSEPIVGSCSSDKQVYLGEI 344
           DTTSRRILYKLPGHTGSVNE VFHPSEPIVGSCSSDKQ+YLGEI
Sbjct: 301 DTTSRRILYKLPGHTGSVNECVFHPSEPIVGSCSSDKQIYLGEI 344

[Close]

BLAST of Sed0013916 vs. NCBI nr
Match: XP_022966914.1 (U5 small nuclear ribonucleoprotein 40 kDa protein [Cucurbita maxima])

HSP 1 Score: 715.3 bits (1845), Expect = 2.5e-202
Identity = 335/344 (97.38%), Postives = 339/344 (98.55%), Query Frame = 0


Query: 1   MQIPS-GENALAAVGPRPMEWSTVPYNAPQGPGPNGKERTSSLESPIMLLTGHQSAIYTL 60
           MQ+PS GENALA VGPRPMEWSTVPYNAPQGPGPNGK+RTSSLESPIMLL GHQSAIYTL
Sbjct: 1   MQVPSGGENALATVGPRPMEWSTVPYNAPQGPGPNGKQRTSSLESPIMLLAGHQSAIYTL 60

Query: 61  KFNPTGSVIASGSHDREIFLWNVHGDCKNYMVLRGHKNAVLDLHWTTDGSQIVSASPDKT 120
           KFNP GSVIASGSHD+EIFLWNVHGDCKNYMVLRGHKNAVLDLHWTTDGSQIVSASPDKT
Sbjct: 61  KFNPAGSVIASGSHDKEIFLWNVHGDCKNYMVLRGHKNAVLDLHWTTDGSQIVSASPDKT 120

Query: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180
           LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD
Sbjct: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180

Query: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240
           KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT
Sbjct: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240

Query: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYVW 300
           NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYVW
Sbjct: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYVW 300

Query: 301 DTTSRRILYKLPGHTGSVNESVFHPSEPIVGSCSSDKQVYLGEI 344
           DTTSRRILYKLPGHTGSVNE VFHPSEPIVGSCSSDKQ+YLGEI
Sbjct: 301 DTTSRRILYKLPGHTGSVNECVFHPSEPIVGSCSSDKQIYLGEI 344

[Close]

BLAST of Sed0013916 vs. NCBI nr
Match: XP_008446018.1 (PREDICTED: U5 small nuclear ribonucleoprotein 40 kDa protein [Cucumis melo] >KAA0034179.1 U5 small nuclear ribonucleoprotein 40 kDa protein [Cucumis melo var. makuwa] >TYK15740.1 U5 small nuclear ribonucleoprotein 40 kDa protein [Cucumis melo var. makuwa])

HSP 1 Score: 703.0 bits (1813), Expect = 1.3e-198
Identity = 328/344 (95.35%), Postives = 336/344 (97.67%), Query Frame = 0


Query: 1   MQIPS-GENALAAVGPRPMEWSTVPYNAPQGPGPNGKERTSSLESPIMLLTGHQSAIYTL 60
           MQ+PS GENALA VGPRPMEWSTVPYN PQGPGPNGK+RTSSLESPIMLL+GHQSAIYTL
Sbjct: 1   MQVPSEGENALATVGPRPMEWSTVPYNPPQGPGPNGKQRTSSLESPIMLLSGHQSAIYTL 60

Query: 61  KFNPTGSVIASGSHDREIFLWNVHGDCKNYMVLRGHKNAVLDLHWTTDGSQIVSASPDKT 120
           KFNP G+VIASGSHD+EIFLWNVHGDCKN+MVLRGHKNAVLDLHWT DGSQIVSASPDKT
Sbjct: 61  KFNPDGNVIASGSHDKEIFLWNVHGDCKNFMVLRGHKNAVLDLHWTVDGSQIVSASPDKT 120

Query: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180
           LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD
Sbjct: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180

Query: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240
           KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT
Sbjct: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240

Query: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYVW 300
           NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWS DGSKVTAGSSDRMVY+W
Sbjct: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSADGSKVTAGSSDRMVYIW 300

Query: 301 DTTSRRILYKLPGHTGSVNESVFHPSEPIVGSCSSDKQVYLGEI 344
           DTTSRRILYKLPGHTGSVNE VFHPSEPIV SCSSDKQ+YLGEI
Sbjct: 301 DTTSRRILYKLPGHTGSVNECVFHPSEPIVASCSSDKQIYLGEI 344

[Close]

BLAST of Sed0013916 vs. NCBI nr
Match: XP_004135336.1 (U5 small nuclear ribonucleoprotein 40 kDa protein [Cucumis sativus] >KGN51657.1 hypothetical protein Csa_008253 [Cucumis sativus])

HSP 1 Score: 697.6 bits (1799), Expect = 5.4e-197
Identity = 325/344 (94.48%), Postives = 334/344 (97.09%), Query Frame = 0


Query: 1   MQIPS-GENALAAVGPRPMEWSTVPYNAPQGPGPNGKERTSSLESPIMLLTGHQSAIYTL 60
           MQ+PS GENALA VGPRPMEWSTVPYN PQGPGPN K+RTSSLESPIMLL+GHQSAIYTL
Sbjct: 1   MQVPSEGENALATVGPRPMEWSTVPYNPPQGPGPNVKQRTSSLESPIMLLSGHQSAIYTL 60

Query: 61  KFNPTGSVIASGSHDREIFLWNVHGDCKNYMVLRGHKNAVLDLHWTTDGSQIVSASPDKT 120
           KFNP G+V+ASGSHD+EIFLWNVHGDCKN+MVLRGHKNAVLDLHWT DGSQIVSASPDKT
Sbjct: 61  KFNPDGNVVASGSHDKEIFLWNVHGDCKNFMVLRGHKNAVLDLHWTVDGSQIVSASPDKT 120

Query: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180
           LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD
Sbjct: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180

Query: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240
           KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT
Sbjct: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240

Query: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYVW 300
           NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWS DGSKVTAGSSDRMVY+W
Sbjct: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSADGSKVTAGSSDRMVYIW 300

Query: 301 DTTSRRILYKLPGHTGSVNESVFHPSEPIVGSCSSDKQVYLGEI 344
           DTTSRRILYKLPGHTGSVNE VFHPSEPIV SC SDKQ+YLGEI
Sbjct: 301 DTTSRRILYKLPGHTGSVNECVFHPSEPIVASCGSDKQIYLGEI 344

[Close]

BLAST of Sed0013916 vs. ExPASy Swiss-Prot
Match: Q96DI7 (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Homo sapiens OX=9606 GN=SNRNP40 PE=1 SV=1)

HSP 1 Score: 449.5 bits (1155), Expect = 3.4e-125
Identity = 193/309 (62.46%), Postives = 249/309 (80.58%), Query Frame = 0


Query: 35  GKERTSSLESPIMLLTGHQSAIYTLKFNPTGSVIASGSHDREIFLWNVHGDCKNYMVLRG 94
           G  R SSL++PIMLL+GH+  +Y  KF+P GS +AS   DR I LWNV+GDC NY  L+G
Sbjct: 48  GPPRCSSLQAPIMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKG 107

Query: 95  HKNAVLDLHWTTDGSQIVSASPDKTLRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLI 154
           H  AV++LH+ TDGS + SAS DKT+  WD ETG+++K++  H+SFVNSC P RRGP L+
Sbjct: 108 HSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLV 167

Query: 155 VSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEV 214
            +GSDDGT KLWD+R++ AIQTF + YQ+ AV+F+D SD+I +GGIDND+KVWDLR+ ++
Sbjct: 168 CTGSDDGTVKLWDIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKL 227

Query: 215 MMTLQGHQDMITGMQLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKN 274
             T++GH D +TG+ LS +GSYLL+N MD  + +WD+RP+AP+ RCVKIF+G+ HNFEKN
Sbjct: 228 TYTMRGHADSVTGLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKN 287

Query: 275 LLKCSWSPDGSKVTAGSSDRMVYVWDTTSRRILYKLPGHTGSVNESVFHPSEPIVGSCSS 334
           LL+CSWSPDGSK+ AGS+DR VYVWDTTSRRILYKLPGH GS+NE  FHP EPI+ S SS
Sbjct: 288 LLRCSWSPDGSKIAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEPIIISASS 347

Query: 335 DKQVYLGEI 344
           DK++Y+GEI
Sbjct: 348 DKRLYMGEI 356

[Close]

BLAST of Sed0013916 vs. ExPASy Swiss-Prot
Match: Q6PE01 (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Mus musculus OX=10090 GN=Snrnp40 PE=1 SV=1)

HSP 1 Score: 448.7 bits (1153), Expect = 5.7e-125
Identity = 191/309 (61.81%), Postives = 249/309 (80.58%), Query Frame = 0


Query: 35  GKERTSSLESPIMLLTGHQSAIYTLKFNPTGSVIASGSHDREIFLWNVHGDCKNYMVLRG 94
           G  R SSL++PIMLL+GH+  +Y  KF+P GS +AS   DR I LWNV+GDC NY  L+G
Sbjct: 49  GPPRCSSLQAPIMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKG 108

Query: 95  HKNAVLDLHWTTDGSQIVSASPDKTLRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLI 154
           H  AV++LH+ TDGS + SAS DKT+  WD ETG+++K++  H+SFVNSC P RRGP L+
Sbjct: 109 HSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLV 168

Query: 155 VSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEV 214
            +GSDDGT KLWD+R++ A+QTF + YQ+ AV+F+D SD+I +GGIDND+KVWDLR+ ++
Sbjct: 169 CTGSDDGTVKLWDIRKKAAVQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKL 228

Query: 215 MMTLQGHQDMITGMQLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKN 274
             T++GH D +TG+ LS +GSYLL+N MD  + +WD+RP+AP+ RCVKIF+G+ HNFEKN
Sbjct: 229 TYTMRGHADSVTGLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKN 288

Query: 275 LLKCSWSPDGSKVTAGSSDRMVYVWDTTSRRILYKLPGHTGSVNESVFHPSEPIVGSCSS 334
           LL+CSWSPDGSK+ AGS+DR VYVWDTTSRR+LYKLPGH GS+NE  FHP EPI+ S SS
Sbjct: 289 LLRCSWSPDGSKIAAGSADRFVYVWDTTSRRVLYKLPGHAGSINEVAFHPDEPIILSASS 348

Query: 335 DKQVYLGEI 344
           DK++Y+GEI
Sbjct: 349 DKRLYMGEI 357

[Close]

BLAST of Sed0013916 vs. ExPASy Swiss-Prot
Match: Q2HJH6 (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Bos taurus OX=9913 GN=SNRNP40 PE=2 SV=1)

HSP 1 Score: 448.4 bits (1152), Expect = 7.5e-125
Identity = 192/309 (62.14%), Postives = 249/309 (80.58%), Query Frame = 0


Query: 35  GKERTSSLESPIMLLTGHQSAIYTLKFNPTGSVIASGSHDREIFLWNVHGDCKNYMVLRG 94
           G  R SSL++PIMLL+GH+  +Y  KF+P GS +AS   DR I LWNV+GDC NY  L+G
Sbjct: 49  GPPRCSSLQAPIMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKG 108

Query: 95  HKNAVLDLHWTTDGSQIVSASPDKTLRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLI 154
           H  AV++LH+ TDGS + SAS DKT+  WD ETG+++K++  H+SFVNSC P RRGP L+
Sbjct: 109 HSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLV 168

Query: 155 VSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEV 214
            +GSDDGT KLWD+R++ AIQTF + YQ+ AV+F+D SD+I +GGIDND+KVWDLR+ ++
Sbjct: 169 CTGSDDGTVKLWDIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKL 228

Query: 215 MMTLQGHQDMITGMQLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKN 274
             T++GH D +TG+ LS +GSYLL+N MD  + +WD+RP+AP+ RCV+IF+G+ HNFEKN
Sbjct: 229 TYTMRGHADSVTGLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVRIFQGNVHNFEKN 288

Query: 275 LLKCSWSPDGSKVTAGSSDRMVYVWDTTSRRILYKLPGHTGSVNESVFHPSEPIVGSCSS 334
           LL+CSWSPDGSK+ AGS+DR VYVWDTTSRRILYKLPGH GS+NE  FHP EPI+ S SS
Sbjct: 289 LLRCSWSPDGSKIAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEPIILSASS 348

Query: 335 DKQVYLGEI 344
           DK++Y+GEI
Sbjct: 349 DKRLYMGEI 357

[Close]

BLAST of Sed0013916 vs. ExPASy Swiss-Prot
Match: Q5RF51 (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Pongo abelii OX=9601 GN=SNRNP40 PE=2 SV=1)

HSP 1 Score: 443.0 bits (1138), Expect = 3.2e-123
Identity = 191/309 (61.81%), Postives = 248/309 (80.26%), Query Frame = 0


Query: 35  GKERTSSLESPIMLLTGHQSAIYTLKFNPTGSVIASGSHDREIFLWNVHGDCKNYMVLRG 94
           G  R SSL++PIMLL+GH+  +Y  KF+P GS +AS   DR I LWNV+GDC NY  L+G
Sbjct: 48  GPPRCSSLQAPIMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCGNYATLKG 107

Query: 95  HKNAVLDLHWTTDGSQIVSASPDKTLRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLI 154
           +  AV++LH+ TDGS + SAS DKT+  WD ETG+++K++  H+SFVNSC P RRGP L+
Sbjct: 108 YSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLV 167

Query: 155 VSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEV 214
            +GSDDGT KLWD+R++ AIQTF + YQ+ AV+F+D SD+I +GGIDND+KVWDLR+ ++
Sbjct: 168 CTGSDDGTVKLWDIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKL 227

Query: 215 MMTLQGHQDMITGMQLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKN 274
             T++GH D +TG+ LS +GSYLL+N MD  + +WD+RP+AP+ RCVKIF+G+ HNFEKN
Sbjct: 228 TYTMRGHADSVTGLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKN 287

Query: 275 LLKCSWSPDGSKVTAGSSDRMVYVWDTTSRRILYKLPGHTGSVNESVFHPSEPIVGSCSS 334
           LL+CSWSPDGSK+ AGS+DR V VWDTTSRRILYKLPGH GS+NE  FHP EPI+ S SS
Sbjct: 288 LLRCSWSPDGSKIAAGSADRSVCVWDTTSRRILYKLPGHAGSINEVAFHPDEPIIISASS 347

Query: 335 DKQVYLGEI 344
           DK++Y+GEI
Sbjct: 348 DKRLYMGEI 356

[Close]

BLAST of Sed0013916 vs. ExPASy Swiss-Prot
Match: Q55AR8 (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Dictyostelium discoideum OX=44689 GN=snrnp40 PE=3 SV=1)

HSP 1 Score: 405.2 bits (1040), Expect = 7.3e-112
Identity = 178/310 (57.42%), Postives = 231/310 (74.52%), Query Frame = 0


Query: 35  GKERTSSLESPIMLLTGHQSAIYTLKFNPTGSVIASGSHDREIFLWNVHGDCKNYMVLRG 94
           G ERTS LE PIM L GH+  IY+ KFN  G+ +ASG  D+EIFLWNV+G+C NY VL+G
Sbjct: 44  GTERTSKLEHPIMQLIGHKGEIYSCKFNSYGTALASGGSDKEIFLWNVYGECINYSVLKG 103

Query: 95  HKNAVLDLHWTTDGSQIVSASPDKTLRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLI 154
           HK  +L+LHW+TD ++I +A  DK++  WD   G+ IK++ EHS  VNSCCP RRGPPL+
Sbjct: 104 HKGTILELHWSTDSNEIYTACTDKSIGVWDSNKGELIKRIREHSGVVNSCCPARRGPPLV 163

Query: 155 VSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGE- 214
            SGSDD +A+++D R +G+   F  KY +T+V FSDASD++ TGGIDN ++VWD+R  E 
Sbjct: 164 ASGSDDRSARIFDTRSKGSTHLFQHKYPVTSVCFSDASDQLITGGIDNVIRVWDIRNQED 223

Query: 215 VMMTLQGHQDMITGMQLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEK 274
            + TL  HQD IT   +S DG+YLL+N MD    IWD+RPYAP NR +K F G Q+NFEK
Sbjct: 224 PLYTLASHQDTITSTSVSKDGAYLLSNSMDNSCKIWDIRPYAPPNRNIKTFNGAQNNFEK 283

Query: 275 NLLKCSWSPDGSKVTAGSSDRMVYVWDTTSRRILYKLPGHTGSVNESVFHPSEPIVGSCS 334
           NL+K SWS DG ++  GSSDR VY+WDT ++++ Y LPGH+G+VNE  FHP+EPI+ SCS
Sbjct: 284 NLIKSSWSIDGRRIGCGSSDRQVYIWDTNTKQLQYCLPGHSGTVNEVTFHPNEPIIASCS 343

Query: 335 SDKQVYLGEI 344
           SDK +YLGEI
Sbjct: 344 SDKTIYLGEI 353

[Close]

BLAST of Sed0013916 vs. ExPASy TrEMBL
Match: A0A6J1G1Q0 (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Cucurbita moschata OX=3662 GN=LOC111449859 PE=4 SV=1)

HSP 1 Score: 717.2 bits (1850), Expect = 3.2e-203
Identity = 336/344 (97.67%), Postives = 340/344 (98.84%), Query Frame = 0


Query: 1   MQIPS-GENALAAVGPRPMEWSTVPYNAPQGPGPNGKERTSSLESPIMLLTGHQSAIYTL 60
           MQ+PS GENALA VGPRPMEWSTVPYNAPQGPGPNGK+RTSSLESPIMLLTGHQSAIYTL
Sbjct: 1   MQVPSGGENALATVGPRPMEWSTVPYNAPQGPGPNGKQRTSSLESPIMLLTGHQSAIYTL 60

Query: 61  KFNPTGSVIASGSHDREIFLWNVHGDCKNYMVLRGHKNAVLDLHWTTDGSQIVSASPDKT 120
           KFNP GSVIASGSHD+EIFLWNVHGDCKNYMVLRGHKNAVLDLHWTTDGSQIVSASPDKT
Sbjct: 61  KFNPAGSVIASGSHDKEIFLWNVHGDCKNYMVLRGHKNAVLDLHWTTDGSQIVSASPDKT 120

Query: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180
           LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD
Sbjct: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180

Query: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240
           KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT
Sbjct: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240

Query: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYVW 300
           NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYVW
Sbjct: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYVW 300

Query: 301 DTTSRRILYKLPGHTGSVNESVFHPSEPIVGSCSSDKQVYLGEI 344
           DTTSRRILYKLPGHTGSVNE VFHPSEPIVGSCSSDKQ+YLGEI
Sbjct: 301 DTTSRRILYKLPGHTGSVNECVFHPSEPIVGSCSSDKQIYLGEI 344

[Close]

BLAST of Sed0013916 vs. ExPASy TrEMBL
Match: A0A6J1HV60 (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Cucurbita maxima OX=3661 GN=LOC111466479 PE=4 SV=1)

HSP 1 Score: 715.3 bits (1845), Expect = 1.2e-202
Identity = 335/344 (97.38%), Postives = 339/344 (98.55%), Query Frame = 0


Query: 1   MQIPS-GENALAAVGPRPMEWSTVPYNAPQGPGPNGKERTSSLESPIMLLTGHQSAIYTL 60
           MQ+PS GENALA VGPRPMEWSTVPYNAPQGPGPNGK+RTSSLESPIMLL GHQSAIYTL
Sbjct: 1   MQVPSGGENALATVGPRPMEWSTVPYNAPQGPGPNGKQRTSSLESPIMLLAGHQSAIYTL 60

Query: 61  KFNPTGSVIASGSHDREIFLWNVHGDCKNYMVLRGHKNAVLDLHWTTDGSQIVSASPDKT 120
           KFNP GSVIASGSHD+EIFLWNVHGDCKNYMVLRGHKNAVLDLHWTTDGSQIVSASPDKT
Sbjct: 61  KFNPAGSVIASGSHDKEIFLWNVHGDCKNYMVLRGHKNAVLDLHWTTDGSQIVSASPDKT 120

Query: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180
           LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD
Sbjct: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180

Query: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240
           KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT
Sbjct: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240

Query: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYVW 300
           NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYVW
Sbjct: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYVW 300

Query: 301 DTTSRRILYKLPGHTGSVNESVFHPSEPIVGSCSSDKQVYLGEI 344
           DTTSRRILYKLPGHTGSVNE VFHPSEPIVGSCSSDKQ+YLGEI
Sbjct: 301 DTTSRRILYKLPGHTGSVNECVFHPSEPIVGSCSSDKQIYLGEI 344

[Close]

BLAST of Sed0013916 vs. ExPASy TrEMBL
Match: A0A5A7SYI1 (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G002400 PE=4 SV=1)

HSP 1 Score: 703.0 bits (1813), Expect = 6.2e-199
Identity = 328/344 (95.35%), Postives = 336/344 (97.67%), Query Frame = 0


Query: 1   MQIPS-GENALAAVGPRPMEWSTVPYNAPQGPGPNGKERTSSLESPIMLLTGHQSAIYTL 60
           MQ+PS GENALA VGPRPMEWSTVPYN PQGPGPNGK+RTSSLESPIMLL+GHQSAIYTL
Sbjct: 1   MQVPSEGENALATVGPRPMEWSTVPYNPPQGPGPNGKQRTSSLESPIMLLSGHQSAIYTL 60

Query: 61  KFNPTGSVIASGSHDREIFLWNVHGDCKNYMVLRGHKNAVLDLHWTTDGSQIVSASPDKT 120
           KFNP G+VIASGSHD+EIFLWNVHGDCKN+MVLRGHKNAVLDLHWT DGSQIVSASPDKT
Sbjct: 61  KFNPDGNVIASGSHDKEIFLWNVHGDCKNFMVLRGHKNAVLDLHWTVDGSQIVSASPDKT 120

Query: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180
           LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD
Sbjct: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180

Query: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240
           KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT
Sbjct: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240

Query: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYVW 300
           NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWS DGSKVTAGSSDRMVY+W
Sbjct: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSADGSKVTAGSSDRMVYIW 300

Query: 301 DTTSRRILYKLPGHTGSVNESVFHPSEPIVGSCSSDKQVYLGEI 344
           DTTSRRILYKLPGHTGSVNE VFHPSEPIV SCSSDKQ+YLGEI
Sbjct: 301 DTTSRRILYKLPGHTGSVNECVFHPSEPIVASCSSDKQIYLGEI 344

[Close]

BLAST of Sed0013916 vs. ExPASy TrEMBL
Match: A0A1S3BDK5 (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Cucumis melo OX=3656 GN=LOC103488871 PE=4 SV=1)

HSP 1 Score: 703.0 bits (1813), Expect = 6.2e-199
Identity = 328/344 (95.35%), Postives = 336/344 (97.67%), Query Frame = 0


Query: 1   MQIPS-GENALAAVGPRPMEWSTVPYNAPQGPGPNGKERTSSLESPIMLLTGHQSAIYTL 60
           MQ+PS GENALA VGPRPMEWSTVPYN PQGPGPNGK+RTSSLESPIMLL+GHQSAIYTL
Sbjct: 1   MQVPSEGENALATVGPRPMEWSTVPYNPPQGPGPNGKQRTSSLESPIMLLSGHQSAIYTL 60

Query: 61  KFNPTGSVIASGSHDREIFLWNVHGDCKNYMVLRGHKNAVLDLHWTTDGSQIVSASPDKT 120
           KFNP G+VIASGSHD+EIFLWNVHGDCKN+MVLRGHKNAVLDLHWT DGSQIVSASPDKT
Sbjct: 61  KFNPDGNVIASGSHDKEIFLWNVHGDCKNFMVLRGHKNAVLDLHWTVDGSQIVSASPDKT 120

Query: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180
           LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD
Sbjct: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180

Query: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240
           KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT
Sbjct: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240

Query: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYVW 300
           NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWS DGSKVTAGSSDRMVY+W
Sbjct: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSADGSKVTAGSSDRMVYIW 300

Query: 301 DTTSRRILYKLPGHTGSVNESVFHPSEPIVGSCSSDKQVYLGEI 344
           DTTSRRILYKLPGHTGSVNE VFHPSEPIV SCSSDKQ+YLGEI
Sbjct: 301 DTTSRRILYKLPGHTGSVNECVFHPSEPIVASCSSDKQIYLGEI 344

[Close]

BLAST of Sed0013916 vs. ExPASy TrEMBL
Match: A0A0A0KTB1 (WD_REPEATS_REGION domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G588760 PE=4 SV=1)

HSP 1 Score: 697.6 bits (1799), Expect = 2.6e-197
Identity = 325/344 (94.48%), Postives = 334/344 (97.09%), Query Frame = 0


Query: 1   MQIPS-GENALAAVGPRPMEWSTVPYNAPQGPGPNGKERTSSLESPIMLLTGHQSAIYTL 60
           MQ+PS GENALA VGPRPMEWSTVPYN PQGPGPN K+RTSSLESPIMLL+GHQSAIYTL
Sbjct: 1   MQVPSEGENALATVGPRPMEWSTVPYNPPQGPGPNVKQRTSSLESPIMLLSGHQSAIYTL 60

Query: 61  KFNPTGSVIASGSHDREIFLWNVHGDCKNYMVLRGHKNAVLDLHWTTDGSQIVSASPDKT 120
           KFNP G+V+ASGSHD+EIFLWNVHGDCKN+MVLRGHKNAVLDLHWT DGSQIVSASPDKT
Sbjct: 61  KFNPDGNVVASGSHDKEIFLWNVHGDCKNFMVLRGHKNAVLDLHWTVDGSQIVSASPDKT 120

Query: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180
           LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD
Sbjct: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180

Query: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240
           KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT
Sbjct: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240

Query: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYVW 300
           NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWS DGSKVTAGSSDRMVY+W
Sbjct: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSADGSKVTAGSSDRMVYIW 300

Query: 301 DTTSRRILYKLPGHTGSVNESVFHPSEPIVGSCSSDKQVYLGEI 344
           DTTSRRILYKLPGHTGSVNE VFHPSEPIV SC SDKQ+YLGEI
Sbjct: 301 DTTSRRILYKLPGHTGSVNECVFHPSEPIVASCGSDKQIYLGEI 344

[Close]

BLAST of Sed0013916 vs. TAIR 10
Match: AT2G43770.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 659.1 bits (1699), Expect = 2.0e-189
Identity = 298/343 (86.88%), Postives = 324/343 (94.46%), Query Frame = 0


Query: 1   MQIPSGENALAAVGPRPMEWSTVPYNAPQGPGPNGKERTSSLESPIMLLTGHQSAIYTLK 60
           M+I S EN  A  GPRPMEWSTVP++A QGPGPNGK RTSSLE+PIMLL+GH SA+YT+K
Sbjct: 1   MEIMSRENETALSGPRPMEWSTVPHSASQGPGPNGKNRTSSLEAPIMLLSGHPSAVYTMK 60

Query: 61  FNPTGSVIASGSHDREIFLWNVHGDCKNYMVLRGHKNAVLDLHWTTDGSQIVSASPDKTL 120
           FNP G++IASGSHDREIFLW VHGDCKN+MVL+GHKNA+LDLHWT+DGSQIVSASPDKT+
Sbjct: 61  FNPAGTLIASGSHDREIFLWRVHGDCKNFMVLKGHKNAILDLHWTSDGSQIVSASPDKTV 120

Query: 121 RAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPDK 180
           RAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLI+SGSDDGTAKLWDMRQRGAIQTFPDK
Sbjct: 121 RAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIISGSDDGTAKLWDMRQRGAIQTFPDK 180

Query: 181 YQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLTN 240
           YQITAVSFSDA+DKIFTGG+DNDVKVWDLRKGE  MTL+GHQD ITGM LSPDGSYLLTN
Sbjct: 181 YQITAVSFSDAADKIFTGGVDNDVKVWDLRKGEATMTLEGHQDTITGMSLSPDGSYLLTN 240

Query: 241 GMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYVWD 300
           GMD KLC+WDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDG+KVTAGSSDRMV++WD
Sbjct: 241 GMDNKLCVWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGTKVTAGSSDRMVHIWD 300

Query: 301 TTSRRILYKLPGHTGSVNESVFHPSEPIVGSCSSDKQVYLGEI 344
           TTSRR +YKLPGHTGSVNE VFHP+EPI+GSCSSDK +YLGEI
Sbjct: 301 TTSRRTIYKLPGHTGSVNECVFHPTEPIIGSCSSDKNIYLGEI 343

[Close]

BLAST of Sed0013916 vs. TAIR 10
Match: AT3G49660.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 161.0 bits (406), Expect = 1.7e-39
Identity = 90/296 (30.41%), Postives = 154/296 (52.03%), Query Frame = 0


Query: 49  LTGHQSAIYTLKFNPTGSVIASGSHDREIFLWNVH----GDCKNYMVLRGHKNAVLDLHW 108
           LT H  A+ ++KF+  G ++AS S D+ I  + ++       +      GH+N + D+ +
Sbjct: 20  LTSHNRAVSSVKFSSDGRLLASASADKTIRTYTINTINDPIAEPVQEFTGHENGISDVAF 79

Query: 109 TTDGSQIVSASPDKTLRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAK 168
           ++D   IVSAS DKTL+ WDVETG  IK +  H+++   C        +IVSGS D T +
Sbjct: 80  SSDARFIVSASDDKTLKLWDVETGSLIKTLIGHTNYA-FCVNFNPQSNMIVSGSFDETVR 139

Query: 169 LWDMRQRGAIQTFP-DKYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTL-QGHQ 228
           +WD+     ++  P     +TAV F+     I +   D   ++WD   G  + TL     
Sbjct: 140 IWDVTTGKCLKVLPAHSDPVTAVDFNRDGSLIVSSSYDGLCRIWDSGTGHCVKTLIDDEN 199

Query: 229 DMITGMQLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSP 288
             ++ ++ SP+G ++L   +D  L +W++       + +K + GH  N +  +       
Sbjct: 200 PPVSFVRFSPNGKFILVGTLDNTLRLWNI----SSAKFLKTYTGHV-NAQYCISSAFSVT 259

Query: 289 DGSKVTAGSSDRMVYVWDTTSRRILYKLPGHTGSVNESVFHPSEPIVGSCSSDKQV 339
           +G ++ +GS D  V++W+  S+++L KL GHT +V     HP+E ++ S S DK V
Sbjct: 260 NGKRIVSGSEDNCVHMWELNSKKLLQKLEGHTETVMNVACHPTENLIASGSLDKTV 309

[Close]

BLAST of Sed0013916 vs. TAIR 10
Match: AT5G64730.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 123.6 bits (309), Expect = 3.0e-28
Identity = 82/295 (27.80%), Postives = 130/295 (44.07%), Query Frame = 0


Query: 48  LLTGHQSAIYTLKFNPTGSVIASGSHDREIFLWNVHGD--CKNYMVLRGHKNAVLDLHWT 107
           +L GH+ A+   +FN  G+   +   DR I LWN H     K Y   + H   V D+H T
Sbjct: 13  ILKGHEGAVLAARFNGDGNYALTCGKDRTIRLWNPHRGILIKTY---KSHGREVRDVHVT 72

Query: 108 TDGSQIVSASPDKTLRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKL 167
           +D ++  S   D+ +  WDV TG+ I+K   H   VN+         ++VS   D + ++
Sbjct: 73  SDNAKFCSCGGDRQVYYWDVSTGRVIRKFRGHDGEVNA-VKFNDSSSVVVSAGFDRSLRV 132

Query: 168 WDMRQRGA-----IQTFPDKYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQG 227
           WD R         I TF D    T +S      +I  G +D  V+ +D+R G  M    G
Sbjct: 133 WDCRSHSVEPVQIIDTFLD----TVMSVVLTKTEIIGGSVDGTVRTFDMRIGREMSDNLG 192

Query: 228 HQDMITGMQLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSW 287
               +  + +S DG+ +L   +D  L + D          +++++GH     K    C  
Sbjct: 193 QP--VNCISISNDGNCVLAGCLDSTLRLLD----RTTGELLQVYKGHISKSFKT--DCCL 252

Query: 288 SPDGSKVTAGSSDRMVYVWDTTSRRILYKLPGHTGSVNESVFHPSEPIVGSCSSD 336
           +   + V  GS D +V+ WD    ++L K   H   V    +HP E  + + S D
Sbjct: 253 TNSDAHVIGGSEDGLVFFWDLVDAKVLSKFRAHDLVVTSVSYHPKEDCMLTSSVD 291

[Close]

BLAST of Sed0013916 vs. TAIR 10
Match: AT5G52820.1 (WD-40 repeat family protein / notchless protein, putative )

HSP 1 Score: 119.4 bits (298), Expect = 5.7e-27
Identity = 85/301 (28.24%), Postives = 144/301 (47.84%), Query Frame = 0


Query: 49  LTGHQSAIYTLKFNPTGSVIASGSHDREIFLWNVHGDCKNYMVLRGHKNAVLDLHWTTDG 108
           + GH  A+  + F+P G  +ASGS D  + LW+++ +   +   +GHKN VL + W+ DG
Sbjct: 105 IAGHAEAVLCVSFSPDGKQLASGSGDTTVRLWDLYTETPLF-TCKGHKNWVLTVAWSPDG 164

Query: 109 SQIVSASPDKTLRAWDVETGK-QIKKMAEHSSFVN--SCCPTRRGPPL--IVSGSDDGTA 168
             +VS S    +  W+ + G+ +   +  H  ++   S  P     P    V+ S DG A
Sbjct: 165 KHLVSGSKSGEICCWNPKKGELEGSPLTGHKKWITGISWEPVHLSSPCRRFVTSSKDGDA 224

Query: 169 KLWDMR-QRGAIQTFPDKYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQ 228
           ++WD+  ++  I        +T V +      I+TG  D  +K+W+  +G+++  L+GH 
Sbjct: 225 RIWDITLKKSIICLSGHTLAVTCVKWG-GDGIIYTGSQDCTIKMWETTQGKLIRELKGHG 284

Query: 229 DMITGMQLSPDGSYLLTNGMDCKLCIWDM--RPYAPQNRCVKIFEGHQHNFEKNLLKCSW 288
             I  + LS +  Y+L  G       +D   R Y P     K  E  ++N  K       
Sbjct: 285 HWINSLALSTE--YVLRTG------AFDHTGRQYPPNEEKQKALE--RYNKTK-----GD 344

Query: 289 SPDGSKVTAGSSDRMVYVWD-TTSRRILYKLPGHTGSVNESVFHPSEPIVGSCSSDKQVY 341
           SP+  ++ +GS D  +++W+ + S++   +L GH   VN   F P    + S S DK V 
Sbjct: 345 SPE--RLVSGSDDFTMFLWEPSVSKQPKKRLTGHQQLVNHVYFSPDGKWIASASFDKSVR 386

[Close]

BLAST of Sed0013916 vs. TAIR 10
Match: AT5G25150.1 (TBP-associated factor 5 )

HSP 1 Score: 116.3 bits (290), Expect = 4.8e-26
Identity = 78/293 (26.62%), Postives = 125/293 (42.66%), Query Frame = 0


Query: 26  NAPQGPGPNGKERTSSLESPIMLLTGHQSAIYTLKFNPTGSVIASGSHDREIFLWNVHGD 85
           ++ Q  GPNG+   +       LL GH   +Y+  F+P G  + S S D  I LW+   +
Sbjct: 398 SSDQSIGPNGRRSYT-------LLLGHSGPVYSATFSPPGDFVLSSSADTTIRLWSTKLN 457

Query: 86  CKNYMVLRGHKNAVLDLHWTTDGSQIVSASPDKTLRAWDVETGKQIKKMAEHSSFVNSCC 145
             N +  +GH   V D  ++  G    S S D+T R W ++  + ++ MA H S V+   
Sbjct: 458 A-NLVCYKGHNYPVWDAQFSPFGHYFASCSHDRTARIWSMDRIQPLRIMAGHLSDVD--- 517

Query: 146 PTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIFTGGIDNDVK 205
                                       +Q  P+             + I TG  D  V+
Sbjct: 518 ---------------------------CVQWHPN------------CNYIATGSSDKTVR 577

Query: 206 VWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKIFE 265
           +WD++ GE +    GH+ M+  + +SPDG Y+ +   D  + +WD+       RC+    
Sbjct: 578 LWDVQTGECVRIFIGHRSMVLSLAMSPDGRYMASGDEDGTIMMWDL----STARCITPLM 632

Query: 266 GHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYVWDTTSRRILYKLPGHTGSVN 319
           GH       +   S+S +GS + +GS+D  V +WD TS   L K     G+ N
Sbjct: 638 GH----NSCVWSLSYSGEGSLLASGSADCTVKLWDVTSSTKLTKAEEKNGNSN 632

The following BLAST results are available for this feature:

BLAST of Sed0013916 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022945717.1	6.6e-203	97.67	U5 small nuclear ribonucleoprotein 40 kDa protein [Cucurbita moschata] >KAG65735...	[more]
XP_023542336.1	1.9e-202	97.38	U5 small nuclear ribonucleoprotein 40 kDa protein [Cucurbita pepo subsp. pepo]	[more]
XP_022966914.1	2.5e-202	97.38	U5 small nuclear ribonucleoprotein 40 kDa protein [Cucurbita maxima]	[more]
XP_008446018.1	1.3e-198	95.35	PREDICTED: U5 small nuclear ribonucleoprotein 40 kDa protein [Cucumis melo] >KAA...	[more]
XP_004135336.1	5.4e-197	94.48	U5 small nuclear ribonucleoprotein 40 kDa protein [Cucumis sativus] >KGN51657.1 ...	[more]

BLAST of Sed0013916 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q96DI7	3.4e-125	62.46	U5 small nuclear ribonucleoprotein 40 kDa protein OS=Homo sapiens OX=9606 GN=SNR...	[more]
Q6PE01	5.7e-125	61.81	U5 small nuclear ribonucleoprotein 40 kDa protein OS=Mus musculus OX=10090 GN=Sn...	[more]
Q2HJH6	7.5e-125	62.14	U5 small nuclear ribonucleoprotein 40 kDa protein OS=Bos taurus OX=9913 GN=SNRNP...	[more]
Q5RF51	3.2e-123	61.81	U5 small nuclear ribonucleoprotein 40 kDa protein OS=Pongo abelii OX=9601 GN=SNR...	[more]
Q55AR8	7.3e-112	57.42	U5 small nuclear ribonucleoprotein 40 kDa protein OS=Dictyostelium discoideum OX...	[more]

BLAST of Sed0013916 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G1Q0	3.2e-203	97.67	U5 small nuclear ribonucleoprotein 40 kDa protein OS=Cucurbita moschata OX=3662 ...	[more]
A0A6J1HV60	1.2e-202	97.38	U5 small nuclear ribonucleoprotein 40 kDa protein OS=Cucurbita maxima OX=3661 GN...	[more]
A0A5A7SYI1	6.2e-199	95.35	U5 small nuclear ribonucleoprotein 40 kDa protein OS=Cucumis melo var. makuwa OX...	[more]
A0A1S3BDK5	6.2e-199	95.35	U5 small nuclear ribonucleoprotein 40 kDa protein OS=Cucumis melo OX=3656 GN=LOC...	[more]
A0A0A0KTB1	2.6e-197	94.48	WD_REPEATS_REGION domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G...	[more]

BLAST of Sed0013916 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G43770.1	2.0e-189	86.88	Transducin/WD40 repeat-like superfamily protein	[more]
AT3G49660.1	1.7e-39	30.41	Transducin/WD40 repeat-like superfamily protein	[more]
AT5G64730.1	3.0e-28	27.80	Transducin/WD40 repeat-like superfamily protein	[more]
AT5G52820.1	5.7e-27	28.24	WD-40 repeat family protein / notchless protein, putative	[more]
AT5G25150.1	4.8e-26	26.62	TBP-associated factor 5	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR020472	G-protein beta WD-40 repeat	PRINTS	PR00320	GPROTEINBRPT	coord: 154..168 score: 41.82 coord: 68..82 score: 35.53 coord: 111..125 score: 37.9
IPR001680	WD40 repeat	SMART	SM00320	WD40_4	coord: 170..208 e-value: 3.2E-4 score: 30.0 coord: 85..124 e-value: 5.2E-8 score: 42.6 coord: 42..81 e-value: 1.8E-8 score: 44.1 coord: 257..300 e-value: 1.1E-6 score: 38.2 coord: 303..342 e-value: 0.044 score: 22.9 coord: 127..167 e-value: 1.6E-7 score: 41.0 coord: 211..250 e-value: 1.6E-8 score: 44.3
IPR001680	WD40 repeat	PFAM	PF00400	WD40	coord: 183..208 e-value: 0.0089 score: 16.9 coord: 213..250 e-value: 7.2E-6 score: 26.7 coord: 45..81 e-value: 1.8E-6 score: 28.6 coord: 129..167 e-value: 4.1E-4 score: 21.1 coord: 259..300 e-value: 2.4E-6 score: 28.1 coord: 89..124 e-value: 4.3E-4 score: 21.0
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 218..252 score: 13.516088
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 310..343 score: 8.703868
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 279..309 score: 11.009724
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 183..217 score: 12.580379
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 49..82 score: 15.554599
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 92..133 score: 16.523727
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 134..176 score: 10.541869
IPR015943	WD40/YVTN repeat-like-containing domain superfamily	GENE3D	2.130.10.10		coord: 41..343 e-value: 1.8E-121 score: 406.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 21..40
None	No IPR available	PANTHER	PTHR44006	U5 SMALL NUCLEAR RIBONUCLEOPROTEIN 40 KDA PROTEIN	coord: 32..343
None	No IPR available	PANTHER	PTHR44006:SF1	U5 SMALL NUCLEAR RIBONUCLEOPROTEIN 40 KDA PROTEIN	coord: 32..343
None	No IPR available	PROSITE	PS50294	WD_REPEATS_REGION	coord: 218..252 score: 11.207411
None	No IPR available	PROSITE	PS50294	WD_REPEATS_REGION	coord: 92..129 score: 12.578312
None	No IPR available	PROSITE	PS50294	WD_REPEATS_REGION	coord: 49..82 score: 12.815584
None	No IPR available	PROSITE	PS50294	WD_REPEATS_REGION	coord: 176..213 score: 9.151057
None	No IPR available	PROSITE	PS50294	WD_REPEATS_REGION	coord: 310..343 score: 8.729241
None	No IPR available	CDD	cd00200	WD40	coord: 49..340 e-value: 8.91447E-73 score: 225.677
IPR019775	WD40 repeat, conserved site	PROSITE	PS00678	WD_REPEATS_1	coord: 68..82
IPR019775	WD40 repeat, conserved site	PROSITE	PS00678	WD_REPEATS_1	coord: 195..209
IPR019775	WD40 repeat, conserved site	PROSITE	PS00678	WD_REPEATS_1	coord: 287..301
IPR019775	WD40 repeat, conserved site	PROSITE	PS00678	WD_REPEATS_1	coord: 111..125
IPR019775	WD40 repeat, conserved site	PROSITE	PS00678	WD_REPEATS_1	coord: 154..168
IPR036322	WD40-repeat-containing domain superfamily	SUPERFAMILY	50978	WD40 repeat-like	coord: 46..340

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0013916.1	Sed0013916.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0071013	catalytic step 2 spliceosome
molecular_function	GO:0005515	protein binding