Sed0013870 (gene) Chayote v1

Overview


Name	Sed0013870
Type	gene
Organism	Sechium edule (Chayote v1)
Description	cysteine proteinase inhibitor A-like
Location	LG11: 1453174 .. 1453635 (+)
RNA-Seq Expression	Sed0013870
Synteny	Sed0013870

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCATCAAGTATTTTAAAAATATAAAAATATCTATCAAAAGTGTGACCATGAGTGATTGTGTGATAAAAAATGTCGATAGTGCATTTGTGCAAGAACTTGGAACGTTTGCAGTGAATGAACATAACAAGAAAACAGGAGAGAAATTGATATTCAAGCGCGTACCGAATGGTGTAATGTACAATGGTCTTCCTATGATTTATCCTTCATTTATACATTATGATCTTATGGTGGAGGTTGAAGTTCGTGATAAATTTGATTGGCCATATGTAGCAAAAATGATTGTCCCAGGTAATCCAATTCTCACGAAGGATCTCATCTCTTTTGAACCTGTCCTCGAGTACAAGTAGTAATACTCGTTTTTGGTATTTACAAGACAATATGTATAGGCCTAAATTATAATATTGTCTTTTTTATATGAATAATACCCGCTTATATCAAATATATATATATATATATAACGAC

mRNA sequence

CCATCAAGTATTTTAAAAATATAAAAATATCTATCAAAAGTGTGACCATGAGTGATTGTGTGATAAAAAATGTCGATAGTGCATTTGTGCAAGAACTTGGAACGTTTGCAGTGAATGAACATAACAAGAAAACAGGAGAGAAATTGATATTCAAGCGCGTACCGAATGGTGTAATGTACAATGGTCTTCCTATGATTTATCCTTCATTTATACATTATGATCTTATGGTGGAGGTTGAAGTTCGTGATAAATTTGATTGGCCATATGTAGCAAAAATGATTGTCCCAGGTAATCCAATTCTCACGAAGGATCTCATCTCTTTTGAACCTGTCCTCGAGTACAAGTAGTAATACTCGTTTTTGGTATTTACAAGACAATATGTATAGGCCTAAATTATAATATTGTCTTTTTTATATGAATAATACCCGCTTATATCAAATATATATATATATATATAACGAC

Coding sequence (CDS)

ATGAGTGATTGTGTGATAAAAAATGTCGATAGTGCATTTGTGCAAGAACTTGGAACGTTTGCAGTGAATGAACATAACAAGAAAACAGGAGAGAAATTGATATTCAAGCGCGTACCGAATGGTGTAATGTACAATGGTCTTCCTATGATTTATCCTTCATTTATACATTATGATCTTATGGTGGAGGTTGAAGTTCGTGATAAATTTGATTGGCCATATGTAGCAAAAATGATTGTCCCAGGTAATCCAATTCTCACGAAGGATCTCATCTCTTTTGAACCTGTCCTCGAGTACAAGTAG

Protein sequence

MSDCVIKNVDSAFVQELGTFAVNEHNKKTGEKLIFKRVPNGVMYNGLPMIYPSFIHYDLMVEVEVRDKFDWPYVAKMIVPGNPILTKDLISFEPVLEYK

Homology

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BLAST of Sed0013870 vs. NCBI nr
Match: XP_008442277.1 (PREDICTED: cysteine proteinase inhibitor A-like [Cucumis melo] >KAA0041897.1 cysteine proteinase inhibitor A-like [Cucumis melo var. makuwa] >TYK05422.1 cysteine proteinase inhibitor A-like [Cucumis melo var. makuwa])

HSP 1 Score: 60.8 bits (146), Expect = 7.4e-06
Identity = 39/96 (40.62%), Postives = 53/96 (55.21%), Query Frame = 0


Query: 10  DSAFVQELGTFAVNEHNKKTGEKLIFKRVPNGVMYNGLPMIYP-SFIHYDLMVEVEVRDK 69
           D+  VQ+LG   V++HNKKTGE L F RV NG+  +    I P   + Y+L++E     K
Sbjct: 15  DNLEVQDLGNLTVDDHNKKTGENLKFVRVVNGLAASFSDPISPLGGVLYELVLEAITTSK 74

Query: 70  FDWPYVA-----KMIVPGNPILTKDLISFEPVLEYK 100
            +W Y A     K I P   +L     SF+PVLEY+
Sbjct: 75  INWTYKARVSKSKAITPPFHML-YSFQSFKPVLEYE 109

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BLAST of Sed0013870 vs. NCBI nr
Match: KAE8649716.1 (hypothetical protein Csa_012476 [Cucumis sativus])

HSP 1 Score: 60.1 bits (144), Expect = 1.3e-05
Identity = 36/98 (36.73%), Postives = 54/98 (55.10%), Query Frame = 0


Query: 6   IKNVDSAFVQELGTFAVNEHNKKTGEKLIFKRVPNGVMYNGLPMIYP-SFIHYDLMVEVE 65
           IK+++   VQE+G   V++HNKKTGE L F RV NG+    +    P     Y+L++E  
Sbjct: 10  IKDINDPQVQEIGNLTVDDHNKKTGENLKFVRVVNGLFAGFVDPFSPLGGTVYELVLEAI 69

Query: 66  VRDKFDWPYVAKMIVPG--NPI-LTKDLISFEPVLEYK 100
              K +W Y  K+       P+ +  +  SFEPVL+Y+
Sbjct: 70  NAGKINWTYKVKVSASTTIRPLGVVYNFQSFEPVLQYE 107

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BLAST of Sed0013870 vs. NCBI nr
Match: KAE8648095.1 (hypothetical protein Csa_004720 [Cucumis sativus])

HSP 1 Score: 56.2 bits (134), Expect = 1.8e-04
Identity = 36/99 (36.36%), Postives = 56/99 (56.57%), Query Frame = 0


Query: 5   VIKNVDSAFVQELGTFAVNEHNKKTGEKLIFKRVPNGVMYNGLPMIYPSFIHYDLMVEVE 64
           +IK+V S  V E G  AV+EHNKK  + L+F RV +G+    +  I      Y L++E +
Sbjct: 13  LIKDVHSPNVIEAGKIAVDEHNKKENDNLVFTRVVSGLAPRAI--IGTILWSYILVIEAK 72

Query: 65  VRDKFDWPYVAKMI----VPGNPILTKDLISFEPVLEYK 100
             D +   YVAK++    +P N   + +L+SF+ +L YK
Sbjct: 73  NCDGYPVAYVAKIVKYLTIPEN---SYELVSFQAILGYK 106

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BLAST of Sed0013870 vs. NCBI nr
Match: KGN54823.1 (hypothetical protein Csa_012607 [Cucumis sativus])

HSP 1 Score: 55.8 bits (133), Expect = 2.4e-04
Identity = 35/97 (36.08%), Postives = 53/97 (54.64%), Query Frame = 0


Query: 6   IKNVDSAFVQELGTFAV-NEHNKKTGEKLIFKRVPNGVMYNGLPMIYPSF---IHYDLMV 65
           I +++   VQ LG  AV N ++K +GEKL F RV NG+  +    I P F   I Y L++
Sbjct: 13  IIDINDPHVQALGELAVENLYSKNSGEKLKFVRVVNGLKSD--KYIGPGFTEVILYHLVL 72

Query: 66  EVEVRDKFDWPYVAKMIVPGNPILTKDLISFEPVLEY 99
           E +  ++ +W Y  K+      ++    +SFEPVL Y
Sbjct: 73  EAKTNEEINWTYATKLEEVSGGLIRHVFLSFEPVLPY 107

[Close]

BLAST of Sed0013870 vs. ExPASy TrEMBL
Match: A0A5A7TJK0 (Cysteine proteinase inhibitor A-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold83G001140 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 3.6e-06
Identity = 39/96 (40.62%), Postives = 53/96 (55.21%), Query Frame = 0


Query: 10  DSAFVQELGTFAVNEHNKKTGEKLIFKRVPNGVMYNGLPMIYP-SFIHYDLMVEVEVRDK 69
           D+  VQ+LG   V++HNKKTGE L F RV NG+  +    I P   + Y+L++E     K
Sbjct: 15  DNLEVQDLGNLTVDDHNKKTGENLKFVRVVNGLAASFSDPISPLGGVLYELVLEAITTSK 74

Query: 70  FDWPYVA-----KMIVPGNPILTKDLISFEPVLEYK 100
            +W Y A     K I P   +L     SF+PVLEY+
Sbjct: 75  INWTYKARVSKSKAITPPFHML-YSFQSFKPVLEYE 109

[Close]

BLAST of Sed0013870 vs. ExPASy TrEMBL
Match: A0A1S3B5B9 (cysteine proteinase inhibitor A-like OS=Cucumis melo OX=3656 GN=LOC103486185 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 3.6e-06
Identity = 39/96 (40.62%), Postives = 53/96 (55.21%), Query Frame = 0


Query: 10  DSAFVQELGTFAVNEHNKKTGEKLIFKRVPNGVMYNGLPMIYP-SFIHYDLMVEVEVRDK 69
           D+  VQ+LG   V++HNKKTGE L F RV NG+  +    I P   + Y+L++E     K
Sbjct: 15  DNLEVQDLGNLTVDDHNKKTGENLKFVRVVNGLAASFSDPISPLGGVLYELVLEAITTSK 74

Query: 70  FDWPYVA-----KMIVPGNPILTKDLISFEPVLEYK 100
            +W Y A     K I P   +L     SF+PVLEY+
Sbjct: 75  INWTYKARVSKSKAITPPFHML-YSFQSFKPVLEYE 109

The following BLAST results are available for this feature:

BLAST of Sed0013870 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008442277.1	7.4e-06	40.63	PREDICTED: cysteine proteinase inhibitor A-like [Cucumis melo] >KAA0041897.1 cys...	[more]
KAE8649716.1	1.3e-05	36.73	hypothetical protein Csa_012476 [Cucumis sativus]	[more]
KAE8648095.1	1.8e-04	36.36	hypothetical protein Csa_004720 [Cucumis sativus]	[more]
KGN54823.1	2.4e-04	36.08	hypothetical protein Csa_012607 [Cucumis sativus]	[more]

BLAST of Sed0013870 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0013870 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TJK0	3.6e-06	40.63	Cysteine proteinase inhibitor A-like OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A1S3B5B9	3.6e-06	40.63	cysteine proteinase inhibitor A-like OS=Cucumis melo OX=3656 GN=LOC103486185 PE=...	[more]

BLAST of Sed0013870 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000010	Cystatin domain	PFAM	PF16845	SQAPI	coord: 6..93 e-value: 1.8E-8 score: 34.6
None	No IPR available	GENE3D	3.10.450.10		coord: 3..99 e-value: 1.1E-8 score: 36.9
None	No IPR available	SUPERFAMILY	54403	Cystatin/monellin	coord: 10..96

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0013870.1	Sed0013870.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0004869	cysteine-type endopeptidase inhibitor activity