Sed0013839 (gene) Chayote v1

Overview


Name	Sed0013839
Type	gene
Organism	Sechium edule (Chayote v1)
Description	RRM domain-containing protein
Location	LG13: 23810015 .. 23815154 (-)
RNA-Seq Expression	Sed0013839
Synteny	Sed0013839

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGGGAGTAGGACTGTAAGCCGGAGAAAAGAAAAGGGCGTGGGGGAGTGTTGCAGAACAGTCAATCAAGCCATGGGAGACGATGCTTACACCAGATACATCGCCTCCGCCGATCTAGGTACGTTTCTCTTCTCGAACCCTAATTCAATTTCCTCTTGTACTGCTTCAATCCAATCCATATCAGAACGAAATCGAACTCTTTACAATCGGATCAACATTTGCCTCTGTATTGTTTTCGACGCACAGATTTGAGATCATGGAATGAAAACGAACTGAATCGCTTAAAATATCGAAGAAAGAGCTTGTGGCTAGTTGATTGTAGGGGAAAGGTTATTTTAGGACGTTTGGATGAGGAAATTTGGGGTTAATCTTGTGAATTTCTGTTCTATATCAATTTGTTAGGATACTTTTTTTATGAATACTATTGCGTTTGGCTTGTTGAATCACTGATAGGAAGCAATTGCGAACGCTGCTTCTGTTTTGCTATAAGATTAAGGAAAAACTTCACAAATTCTCTGTTTCAATCTAATAACCGGTCTACAATGTTCCGTTCCTCATTGTTTTTTGTTTTCCCATATTAATGTGGAAATGAAAGGTGTTAAATGCGACGAGTTCAAACCTTCGTGTCACATACCTAGAATTTAATGTCCTAGGTATTCACAAACCATCTAATGTAATGTGAACAAACAGTTTTCTGGAAGATTAGTCGAGGTATGTGAAAGTTTGCCTAGAAAATGTCTTAAAAAGCTTATGGTGCAACGACCCTTTGGAGTCTGAGGTGCAAATGGCACAAAAACTCACTGACTTTTTTACTTAAGACACTATATAAAAACACACACACATGCACAACTATTAACCTTCATTTTCATAGAAAGAAATGAAGTTTTGATCAAGAATAAAATATAAAACATACATAAGATAAAAATACAACTATTTGAACTTTGAACATAGCGTTGTGAAGAATTCATAGGCGGTGATGTAGATGAAAAACTAGAGAATATGAGATGTGGAGAAGAGAAAAAGGAAAAAAAAAACAAGTCGATGTAGCCTACATGAGTTTCCTTGAATCCATTATCTCATGCTTTGAATGACCTAGTAGGGGATCTCGCTATCCGGTCAGCAAGTCGGGGTCTAGGGGCGAGGCGCCTGGTTTTGGAGGTTCATGAAAGTTGCCAATGGGCATGCACGAAAAGGCAAGGCGCCTATGGTGCTTTGTGCCTATCGCCTAGGCGGTCACAGGCTGCCTCTTAGAACAGTGGGCCTCGACACTTTCGAATATCAAAAACCAAAGTTGTATTATGCTTGCATACCTCATTCGGTCATTTAGTTGGAGCTTGTAGAATGAACGAAATCGTCCTATCTTTCAAGACAAAGATTCTTCTTACAGCTGCTTCATAGATAATAGCTTTAGTTGTTTCTTCATGCAAGCAATCTCTTCTATTTTATAACTATAGCTATGATTCTCTCTTGAATGGTTGGAGTTTTCTTTTGTCACTCTCACCGTGGTTTTTCATTTACTCTTGTAATTTAAATATCAATGAAGTTGTTTCTTATTCATTTTGAGGGTTAATGATTGACACTTGATTAGTCATCCTGTCGATCAAACATCACCTTTCAAACTGATTTTCTATTGTTGGCACTTGCAGCAGGAAGTGTAGCGAGGTCTGGCCTTTCAAGTTACACTGAAGCACCTCCTTTAACATCTTACCATAATTCGACCTCCATTGATCCTTGGCGCATCCCTCCTGACTATTTGCAAAAAGATGTAAGAATTTCATCTATAGTATAAAATATATTTGTTTTATCCCAGTGCTTTACTTGACTTGTTGCTGCAGACAAGTTCATCAGGACCTGTTGCTTATAGATATACTGACGTTGGAGGCATTAGAAATTATTCGGAACCAGTTATTGGCGGTGTGATATCTGGTATGAGTGCAACGGGCTACACATCTCCTTTTCAAGATTCATTGGCAAGTCAAAGACAAGGTATTGCAGTGGATAGTAGTCTAGGGCTGATGAATATGGCTGACCCAGGTCACGAAAGGGCCAGTTCTCTTGGTCTTAGAAATGCTGAATATGCTCCCATCCCAGCTCAAGAATCGAACATTCTTTTCGTTGGTGGACTTCCTACAAATTGTACCAGAAGAGAAGTCGGTCGTATCCTTGCACCTCATGTACTTGCTTTTGTTACTATTTCTCCTGTCTTTCCAACTTTATTTGCCTTCACTGCTTTAAGTTGCTTAAGGTGCTGGAAGCATCCCATATGATTTGTGCTTCAGTTCGAATGGAACTTAAAAGAGTATTGCTGTTTGATTTACGTCACTCTAGTGAAAGAAAATAGAAAATAAATTGTAATAGACAGAACTACTGTTATGTCTTAACCCTGAGTCGAAGATCTCTTCCGCCCCTTCGTTGGCTATAAAGATATCAAAGTTGTTCACAAGGAGCCCAGACGAGTAAGTTACCAGTTCTCTTTACTCTGAACTATGGAGGCATGTTTTCCATGATAAGATCTTCAAGTGCAATTAACAACTAGAACACACTTATGTTTTTATGGCGTTGTTTTCTTTTATTATCTGAGTTACGTTGTCAAATATATTCCTTTTGTTAAAGCAAGTAATTGAACTGCAGAGCGGAGATAAGGCTACGGTATTGTGCTTTGTAGAGTTCGTTGAAGCAAAACATGCTCGGGCTGGCATGGAAGCTCTGCAAGGTATTGTGACATGCATTCCTCTTTTTATGAGTGAATATCTAATTCAATCTGCAAAGATAAATGCTTGAAGATTGAAGATATGAAGCGCCATTTGTAGCTTCTTATTGTGTATTGTACTATTGCTTAGTACATATAATTTGTGATCCAGGATTTAGTCAGAGTGTTTCTAACACACCCTAATGAACACCATTGACAATATTTACAAACCAACACTCAAAAGAACTAAAAAAACTCTTAAAATGTTCCATATATAGAAGGAATAGCTACTACTTTAGATAATCTGATATATGGTGGTTTTCTGCAGGTTACAAGTTCGATGACAAAAACCCCGATTCCCCAGCTTTGAAGATTCAATTTGCACATTTTCCTTTCCACTTACCATCGAACCATGATGATGGGCGATGAATGCATATTCAACATCTTCGGGAGCTACATGGTCCGAAGGGAATGACAGGTTTTTGGTTGGCACTTTCCTGATATATTTTTACAAGTAAAGTACCTGCTGATCAATGTGCAGTTTCCTGATTTTTAGAGCCTTTTAGATCTTGTGGAATGGTAAAAGTTCATTCCTGGACTTAATCAGTTTCTTTTGTAGTTTAACAACCGGGGTGGGGGATTCAAATCCATCACTTCTTGACCATTTACACACACTGAGATAGTTGTTGACAAAATGGTGGTTTTTTGTTCTTCATGAGCACATGGATGAGAACCCAACAAGCTCCTCCCTCCCTTTACTAGTAAAAAAAACAAATTATGGGCAGTTTCCAATTCCTGATTGGTATTGGTATCAATCAGTGTGACTTTGACTTTGGTGTCTTTTTGGACTAACAAGTAGTTGTCACTAGTCAGATAGCTTCTTACTCTTGTTCTGTCTCTGTAGGCTTCAGACATCTTCTGCTTTGGATCATGAAAATGACATATAGGTACAAAGATTCCTTACTGTGGTAATAAACTTTGTGGGAATGAAACCATCATTAATTGACCCAAGTGGTAAAAAAAGGTATCAAATATTTCAGAGGTCCTGGGTTCAATTTATAATGATCACCTACCTAAGAAATAATTTCCTATGGATTTCCTTGATATTCAATTGTTGTAAGTTCAGACGATATGTGTCGTGAGAGTAGTTGAGGTGCGCACTCGGGTGTGTTTGTTTTTAGTAGAAGAAGAGTGGTGAATTGACCCTAGTGGTAAAAAAAGGTATCGAATATTCAAGAGGTCCTGAGTTCAATTCATAATGATCACCTACCTAAGAAATAATTTCTTATTGATTTCCTTGATATCCAATTGTTGTAAGACCAGACGATACGTGTCGTGAGAGTAGTTGAGGTGCGCACTCGGGTGTGTTTGTTTCTGGTAGAAGAAGAGTGGTAAACAATCACTCTTCTAGAACCCTTTGTTTGTATTTGTTGGTAGACAACCACCCATCAAACCCTTCATCAAACCCCACATCAAAATCATCACTCGACCACTACGAGTACTAATCTCTAAATGAGTAGTTGATTACTCTGATCACTACTTATTAGAGATAATACAAGCTTCCACCTCAAAATCAATTGGTAGTGAGAACAGTAGGTCATATCTCTTATAAAGATGTTGAAGACTTTTCATCTTTTCAATGTGAAACAAAGATCAGGAGGTGAGTATCTCCAACACTGCTAACACTAATTCCCAAATGAGTAATTAATTACTCCAGCTAATGCTTACATCAATTCCCAAATGAGTAGTTAAATACCTCAACTACCATTAACCCTTCCACTCCAGTCCACTCCACTCCACTACAGTATTTGTACCAAATCCATAAAAAGATTATGTAAAAATAAAAAAATAAAAATAAACTTCATGTGAATGAAGACTATGTTTGCATAAAACCAACCACCCCCACTGAAAAAAGAAACAACCAAGGGTAGGGGAGATTGACAAAATATGGTATTTCTGTGGCTGTGAATGTATAACATATGTGAATGCATATAATCTTTGTGTTGAGAATAATTAAGTTATAGAGAGAAAGGGAGGGGAAGGAGTCAAACATAGATTGCATTTTTTTCAAGCTTGTGGGGTTTGAAAGCATGAAATTGCCCATCACAGGAGGTACAGCCTACAGACAATAGACCAATTAATTCCTTAATTGACTTTTTCTACTGGAACGATCTGGTGGGGGCTGGGTGTGTATTGTTGAAGCCTGCAAGCCATGTTTTTTTACATTGTTTTCTTAGACAAGTTTGAAGGTCGTTTTATATCATTATTTGCTGATCTTTTGAATTGTTTTATTGTTTTTTTGAGTGAATTATAAATTTGGAAAGTTAGAATTTAATCTCTTTAAAGTGTTTGGATGAGGAGTTAGTTTGAATGAGGAATTAGTTTGAAGAGTTATTTTGAGTAGTTATTGAGATTTTTGTAATAGTTTGTTTGGATGTAGATTTTTATGGAAG

mRNA sequence

GGGGAGTAGGACTGTAAGCCGGAGAAAAGAAAAGGGCGTGGGGGAGTGTTGCAGAACAGTCAATCAAGCCATGGGAGACGATGCTTACACCAGATACATCGCCTCCGCCGATCTAGCAGGAAGTGTAGCGAGGTCTGGCCTTTCAAGTTACACTGAAGCACCTCCTTTAACATCTTACCATAATTCGACCTCCATTGATCCTTGGCGCATCCCTCCTGACTATTTGCAAAAAGATACAAGTTCATCAGGACCTGTTGCTTATAGATATACTGACGTTGGAGGCATTAGAAATTATTCGGAACCAGTTATTGGCGGTGTGATATCTGGTATGAGTGCAACGGGCTACACATCTCCTTTTCAAGATTCATTGGCAAGTCAAAGACAAGGTATTGCAGTGGATAGTAGTCTAGGGCTGATGAATATGGCTGACCCAGGTCACGAAAGGGCCAGTTCTCTTGGTCTTAGAAATGCTGAATATGCTCCCATCCCAGCTCAAGAATCGAACATTCTTTTCGTTGGTGGACTTCCTACAAATTGTACCAGAAGAGAAGTCGGTCATCTCTTCCGCCCCTTCGTTGGCTATAAAGATATCAAAGTTGTTCACAAGGAGCCCAGACGAAGCGGAGATAAGGCTACGGTATTGTGCTTTGTAGAGTTCGTTGAAGCAAAACATGCTCGGGCTGGCATGGAAGCTCTGCAAGGTTACAAGTTCGATGACAAAAACCCCGATTCCCCAGCTTTGAAGATTCAATTTGCACATTTTCCTTTCCACTTACCATCGAACCATGATGATGGGCGATGAATGCATATTCAACATCTTCGGGAGCTACATGGTCCGAAGGGAATGACAGGTTTTTGGTTGGCACTTTCCTGATATATTTTTACAAGTAAAGTACCTGCTGATCAATGTGCAGTTTCCTGATTTTTAGAGCCTTTTAGATCTTGTGGAATGGTAAAAGTTCATTCCTGGACTTAATCAGTTTCTTTTGTAGTTTAACAACCGGGGTGGGGGATTCAAATCCATCACTTCTTGACCATTTACACACACTGAGATAGTTGTTGACAAAATGGTGGTTTTTTGTTCTTCATGAGCACATGGATGAGAACCCAACAAGCTCCTCCCTCCCTTTACTAGTAAAAAAAACAAATTATGGGCAGTTTCCAATTCCTGATTGGTATTGGTATCAATCAGTGTGACTTTGACTTTGGTGTCTTTTTGGACTAACAAGTAGTTGTCACTAGTCAGATAGCTTCTTACTCTTGTTCTGTCTCTGTAGGCTTCAGACATCTTCTGCTTTGGATCATGAAAATGACATATAGGTACAAAGATTCCTTACTGTGGTAATAAACTTTGTGGGAATGAAACCATCATTAATTGACCCAAGTGGTAAAAAAAGGTATCAAATATTTCAGAGGTCCTGGGTTCAATTTATAATGATCACCTACCTAAGAAATAATTTCCTATGGATTTCCTTGATATTCAATTGTTGTAAGTTCAGACGATATGTGTCGTGAGAGTAGTTGAGGTGCGCACTCGGGTGTGTTTGTTTTTAGTAGAAGAAGAGTGGTGAATTGACCCTAGTGGTAAAAAAAGGTATCGAATATTCAAGAGGTCCTGAGTTCAATTCATAATGATCACCTACCTAAGAAATAATTTCTTATTGATTTCCTTGATATCCAATTGTTGTAAGACCAGACGATACGTGTCGTGAGAGTAGTTGAGGTGCGCACTCGGGTGTGTTTGTTTCTGGTAGAAGAAGAGTGGTAAACAATCACTCTTCTAGAACCCTTTGTTTGTATTTGTTGGTAGACAACCACCCATCAAACCCTTCATCAAACCCCACATCAAAATCATCACTCGACCACTACGAGTACTAATCTCTAAATGAGTAGTTGATTACTCTGATCACTACTTATTAGAGATAATACAAGCTTCCACCTCAAAATCAATTGGTAGTGAGAACAGTAGGTCATATCTCTTATAAAGATGTTGAAGACTTTTCATCTTTTCAATGTGAAACAAAGATCAGGAGGTGAGTATCTCCAACACTGCTAACACTAATTCCCAAATGAGTAATTAATTACTCCAGCTAATGCTTACATCAATTCCCAAATGAGTAGTTAAATACCTCAACTACCATTAACCCTTCCACTCCAGTCCACTCCACTCCACTACAGTATTTGTACCAAATCCATAAAAAGATTATGTAAAAATAAAAAAATAAAAATAAACTTCATGTGAATGAAGACTATGTTTGCATAAAACCAACCACCCCCACTGAAAAAAGAAACAACCAAGGGTAGGGGAGATTGACAAAATATGGTATTTCTGTGGCTGTGAATGTATAACATATGTGAATGCATATAATCTTTGTGTTGAGAATAATTAAGTTATAGAGAGAAAGGGAGGGGAAGGAGTCAAACATAGATTGCATTTTTTTCAAGCTTGTGGGGTTTGAAAGCATGAAATTGCCCATCACAGGAGGTACAGCCTACAGACAATAGACCAATTAATTCCTTAATTGACTTTTTCTACTGGAACGATCTGGTGGGGGCTGGGTGTGTATTGTTGAAGCCTGCAAGCCATGTTTTTTTACATTGTTTTCTTAGACAAGTTTGAAGGTCGTTTTATATCATTATTTGCTGATCTTTTGAATTGTTTTATTGTTTTTTTGAGTGAATTATAAATTTGGAAAGTTAGAATTTAATCTCTTTAAAGTGTTTGGATGAGGAGTTAGTTTGAATGAGGAATTAGTTTGAAGAGTTATTTTGAGTAGTTATTGAGATTTTTGTAATAGTTTGTTTGGATGTAGATTTTTATGGAAG

Coding sequence (CDS)

ATGGGAGACGATGCTTACACCAGATACATCGCCTCCGCCGATCTAGCAGGAAGTGTAGCGAGGTCTGGCCTTTCAAGTTACACTGAAGCACCTCCTTTAACATCTTACCATAATTCGACCTCCATTGATCCTTGGCGCATCCCTCCTGACTATTTGCAAAAAGATACAAGTTCATCAGGACCTGTTGCTTATAGATATACTGACGTTGGAGGCATTAGAAATTATTCGGAACCAGTTATTGGCGGTGTGATATCTGGTATGAGTGCAACGGGCTACACATCTCCTTTTCAAGATTCATTGGCAAGTCAAAGACAAGGTATTGCAGTGGATAGTAGTCTAGGGCTGATGAATATGGCTGACCCAGGTCACGAAAGGGCCAGTTCTCTTGGTCTTAGAAATGCTGAATATGCTCCCATCCCAGCTCAAGAATCGAACATTCTTTTCGTTGGTGGACTTCCTACAAATTGTACCAGAAGAGAAGTCGGTCATCTCTTCCGCCCCTTCGTTGGCTATAAAGATATCAAAGTTGTTCACAAGGAGCCCAGACGAAGCGGAGATAAGGCTACGGTATTGTGCTTTGTAGAGTTCGTTGAAGCAAAACATGCTCGGGCTGGCATGGAAGCTCTGCAAGGTTACAAGTTCGATGACAAAAACCCCGATTCCCCAGCTTTGAAGATTCAATTTGCACATTTTCCTTTCCACTTACCATCGAACCATGATGATGGGCGATGA

Protein sequence

MGDDAYTRYIASADLAGSVARSGLSSYTEAPPLTSYHNSTSIDPWRIPPDYLQKDTSSSGPVAYRYTDVGGIRNYSEPVIGGVISGMSATGYTSPFQDSLASQRQGIAVDSSLGLMNMADPGHERASSLGLRNAEYAPIPAQESNILFVGGLPTNCTRREVGHLFRPFVGYKDIKVVHKEPRRSGDKATVLCFVEFVEAKHARAGMEALQGYKFDDKNPDSPALKIQFAHFPFHLPSNHDDGR

Homology

[Close]

BLAST of Sed0013839 vs. NCBI nr
Match: XP_022982403.1 (RNA-binding protein 2-like [Cucurbita maxima])

HSP 1 Score: 402.1 bits (1032), Expect = 3.3e-108
Identity = 197/243 (81.07%), Postives = 211/243 (86.83%), Query Frame = 0


Query: 1   MGDDAYTRYIASADLAGSVARSGLSSYTEAPPLTSYHNSTSIDPWRIPPDYLQKDTSSSG 60
           MGDDAYTRY AS D AGSVARSGLS+Y+EAPPLTSY NSTSIDPWRIPPDYLQK+T SSG
Sbjct: 1   MGDDAYTRYAASGDRAGSVARSGLSNYSEAPPLTSYPNSTSIDPWRIPPDYLQKETDSSG 60

Query: 61  PVAYRYTDVGGIRNYSEPVIGGVISGMSATGYTSPFQDSLASQRQGIAVDSSLGLMNMAD 120
           P  Y YTDVGGIRNY EPVIGGV SG+SATG TSPF D+ A QR  IAV SS GLM MAD
Sbjct: 61  PGTYGYTDVGGIRNYPEPVIGGVTSGVSATGNTSPFHDAQARQRHDIAVGSSPGLMAMAD 120

Query: 121 PGHERASSLGLRNAEYAPIPAQESNILFVGGLPTNCTRREVGHLFRPFVGYKDIKVVHKE 180
            GHE+A+SLGLRN E  PI A ESNILFV GLPT+CTRREVGHLFRPF+GYKDI+VVHKE
Sbjct: 121 TGHEKANSLGLRNPERVPISAHESNILFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKE 180

Query: 181 PRRSGDKATVLCFVEFVEAKHARAGMEALQGYKFDDKNPDSPALKIQFAHFPFHLPSNHD 240
           PRR GDKATVLCFVEF+EA+++RA MEALQGYKFDDK PDS ALKIQFAHFPF LPSNHD
Sbjct: 181 PRRRGDKATVLCFVEFIEARYSRAAMEALQGYKFDDKKPDSLALKIQFAHFPFRLPSNHD 240

Query: 241 DGR 244
           D R
Sbjct: 241 DRR 243

[Close]

BLAST of Sed0013839 vs. NCBI nr
Match: XP_022939988.1 (RNA-binding protein 2-like [Cucurbita moschata])

HSP 1 Score: 399.8 bits (1026), Expect = 1.7e-107
Identity = 197/243 (81.07%), Postives = 211/243 (86.83%), Query Frame = 0


Query: 1   MGDDAYTRYIASADLAGSVARSGLSSYTEAPPLTSYHNSTSIDPWRIPPDYLQKDTSSSG 60
           MGDDAYTRY ASAD AGSVARSGLS+Y+EAPPLTSY NSTSIDPWRIPPDYL K+T SSG
Sbjct: 1   MGDDAYTRYAASADRAGSVARSGLSNYSEAPPLTSYPNSTSIDPWRIPPDYLLKETDSSG 60

Query: 61  PVAYRYTDVGGIRNYSEPVIGGVISGMSATGYTSPFQDSLASQRQGIAVDSSLGLMNMAD 120
           P  Y YTDVGGIRNY EPVIGGV SG+SATG TSPF D+ A QR  IAV SS GLM MAD
Sbjct: 61  PGTYGYTDVGGIRNYPEPVIGGVTSGVSATGNTSPFHDAQARQRHDIAVGSSPGLMAMAD 120

Query: 121 PGHERASSLGLRNAEYAPIPAQESNILFVGGLPTNCTRREVGHLFRPFVGYKDIKVVHKE 180
            GHE+A+SLGLRN E  PI AQESNILFV GLPT+CTRREVGHLFRPF+GYKDI+VVHKE
Sbjct: 121 TGHEKANSLGLRNPERVPISAQESNILFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKE 180

Query: 181 PRRSGDKATVLCFVEFVEAKHARAGMEALQGYKFDDKNPDSPALKIQFAHFPFHLPSNHD 240
           PRR GDKATVLCFVEF+EA+++RA MEALQGYKFDDK PDS ALKIQFAHFPF LPSN D
Sbjct: 181 PRRRGDKATVLCFVEFIEARYSRAAMEALQGYKFDDKKPDSLALKIQFAHFPFRLPSNQD 240

Query: 241 DGR 244
           D R
Sbjct: 241 DRR 243

[Close]

BLAST of Sed0013839 vs. NCBI nr
Match: KAG6608363.1 (RNA-binding protein 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 399.8 bits (1026), Expect = 1.7e-107
Identity = 197/243 (81.07%), Postives = 211/243 (86.83%), Query Frame = 0


Query: 1   MGDDAYTRYIASADLAGSVARSGLSSYTEAPPLTSYHNSTSIDPWRIPPDYLQKDTSSSG 60
           MGDDAYTRY ASAD AGSVARSGLS+Y+EAPPLTSY NSTSIDPWRIPPDYL K+T SSG
Sbjct: 67  MGDDAYTRYAASADRAGSVARSGLSNYSEAPPLTSYPNSTSIDPWRIPPDYLLKETDSSG 126

Query: 61  PVAYRYTDVGGIRNYSEPVIGGVISGMSATGYTSPFQDSLASQRQGIAVDSSLGLMNMAD 120
           P  Y YTDVGGIRNY EPVIGGV SG+SATG TSPF D+ A QR  IAV SS GLM MAD
Sbjct: 127 PGTYGYTDVGGIRNYPEPVIGGVTSGVSATGNTSPFHDAQARQRHDIAVGSSPGLMAMAD 186

Query: 121 PGHERASSLGLRNAEYAPIPAQESNILFVGGLPTNCTRREVGHLFRPFVGYKDIKVVHKE 180
            GHE+A+SLGLRN E  PI AQESNILFV GLPT+CTRREVGHLFRPF+GYKDI+VVHKE
Sbjct: 187 TGHEKANSLGLRNPERVPISAQESNILFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKE 246

Query: 181 PRRSGDKATVLCFVEFVEAKHARAGMEALQGYKFDDKNPDSPALKIQFAHFPFHLPSNHD 240
           PRR GDKATVLCFVEF+EA+++RA MEALQGYKFDDK PDS ALKIQFAHFPF LPSN D
Sbjct: 247 PRRRGDKATVLCFVEFIEARYSRAAMEALQGYKFDDKKPDSLALKIQFAHFPFRLPSNQD 306

Query: 241 DGR 244
           D R
Sbjct: 307 DRR 309

[Close]

BLAST of Sed0013839 vs. NCBI nr
Match: KAG7037705.1 (RNA-binding protein 2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 394.8 bits (1013), Expect = 5.3e-106
Identity = 197/245 (80.41%), Postives = 211/245 (86.12%), Query Frame = 0


Query: 1   MGDDAYTRYIASADLAGSVARSGLSSYTEAPPLTSYHNSTSIDPWRIPPDYLQKD--TSS 60
           MGDDAYTRY ASAD AGSVARSGLS+Y+EAPPLTSY NSTSIDPWRIPPDYL K+  T S
Sbjct: 1   MGDDAYTRYAASADRAGSVARSGLSNYSEAPPLTSYPNSTSIDPWRIPPDYLLKELQTDS 60

Query: 61  SGPVAYRYTDVGGIRNYSEPVIGGVISGMSATGYTSPFQDSLASQRQGIAVDSSLGLMNM 120
           SGP  Y YTDVGGIRNY EPVIGGV SG+SATG TSPF D+ A QR  IAV SS GLM M
Sbjct: 61  SGPGTYGYTDVGGIRNYPEPVIGGVTSGVSATGNTSPFHDAQARQRHDIAVGSSPGLMAM 120

Query: 121 ADPGHERASSLGLRNAEYAPIPAQESNILFVGGLPTNCTRREVGHLFRPFVGYKDIKVVH 180
           AD GHE+A+SLGLRN E  PI AQESNILFV GLPT+CTRREVGHLFRPF+GYKDI+VVH
Sbjct: 121 ADTGHEKANSLGLRNPERVPISAQESNILFVDGLPTDCTRREVGHLFRPFIGYKDIRVVH 180

Query: 181 KEPRRSGDKATVLCFVEFVEAKHARAGMEALQGYKFDDKNPDSPALKIQFAHFPFHLPSN 240
           KEPRR GDKATVLCFVEF+EA+++RA MEALQGYKFDDK PDS ALKIQFAHFPF LPSN
Sbjct: 181 KEPRRRGDKATVLCFVEFIEARYSRAAMEALQGYKFDDKKPDSLALKIQFAHFPFRLPSN 240

Query: 241 HDDGR 244
            DD R
Sbjct: 241 QDDRR 245

[Close]

BLAST of Sed0013839 vs. NCBI nr
Match: XP_038896813.1 (RNA-binding protein 2-like isoform X2 [Benincasa hispida])

HSP 1 Score: 393.7 bits (1010), Expect = 1.2e-105
Identity = 194/243 (79.84%), Postives = 209/243 (86.01%), Query Frame = 0


Query: 1   MGDDAYTRYIASADLAGSVARSGLSSYTEAPPLTSYHNSTSIDPWRIPPDYLQKDTSSSG 60
           MGDDAYTRY ASAD AGSVARSGLS+Y+EAPPLTSY NSTSID W I PDYLQKDT+S G
Sbjct: 1   MGDDAYTRYAASADRAGSVARSGLSTYSEAPPLTSYPNSTSIDQWHITPDYLQKDTNSIG 60

Query: 61  PVAYRYTDVGGIRNYSEPVIGGVISGMSATGYTSPFQDSLASQRQGIAVDSSLGLMNMAD 120
           P AY YTDVGGI NY EPVIG V SG SA GYTSPF+DSLASQRQ IAV SS G+M MAD
Sbjct: 61  PGAYGYTDVGGISNYPEPVIGSVASGASAKGYTSPFEDSLASQRQDIAVGSSPGVMGMAD 120

Query: 121 PGHERASSLGLRNAEYAPIPAQESNILFVGGLPTNCTRREVGHLFRPFVGYKDIKVVHKE 180
             HERA+SL LR AE  P  ++ESNILFV GLPT+CTRREVGHLFRPF+GYKDI+VVHKE
Sbjct: 121 TAHERANSLSLRTAEGDPNSSRESNILFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKE 180

Query: 181 PRRSGDKATVLCFVEFVEAKHARAGMEALQGYKFDDKNPDSPALKIQFAHFPFHLPSNHD 240
           PRRSGDKA VLCFVEF+EA++AR  MEALQGYKFDDK PDSP+LKIQFAHFPF LPSNHD
Sbjct: 181 PRRSGDKAMVLCFVEFIEARYARTAMEALQGYKFDDKKPDSPSLKIQFAHFPFRLPSNHD 240

Query: 241 DGR 244
           D R
Sbjct: 241 DRR 243

[Close]

BLAST of Sed0013839 vs. ExPASy Swiss-Prot
Match: F4HWF9 (Nuclear speckle RNA-binding protein B OS=Arabidopsis thaliana OX=3702 GN=NSRB PE=2 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 2.6e-23
Identity = 52/127 (40.94%), Postives = 74/127 (58.27%), Query Frame = 0


Query: 117 NMADPGHERASSLGLRNAEYAPIPAQESNILFVGGLPTNCTRREVGHLFRPFVGYKDIKV 176
           N  D G  +  S+G    E  P+P   SN L+V GLP+NC+RREV H+FRPFVGY+++++
Sbjct: 295 NGRDMGFGQLDSVGRPGREPHPLPPDVSNTLYVEGLPSNCSRREVSHIFRPFVGYREVRL 354

Query: 177 VHKEPRRSGDKATVLCFVEFVEAKHARAGMEALQGYKFDDKNPDSPALKIQFAHFPFHLP 236
           V ++ +      TVLCFV+F  +  A   + ALQ Y+ D+  PDS  L++QF   P   P
Sbjct: 355 VTQDSKHRSGDPTVLCFVDFENSACAATALSALQDYRMDEDEPDSKILRLQFFRNPGPRP 414

Query: 237 SNHDDGR 244
                 R
Sbjct: 415 GQRGGRR 421

[Close]

BLAST of Sed0013839 vs. ExPASy Swiss-Prot
Match: Q8H0P8 (RNA-binding protein 1 OS=Medicago truncatula OX=3880 GN=RBP1 PE=2 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 2.2e-22
Identity = 47/98 (47.96%), Postives = 68/98 (69.39%), Query Frame = 0


Query: 135 EYAPIPAQESNILFVGGLPTNCTRREVGHLFRPFVGYKDIKVVHKEPRRSGDKATVLCFV 194
           E A +P   S  L++ GLP++CTRREV H+FRPFVGY+++++V KE +  GD   +LCFV
Sbjct: 141 EPALLPPDASPTLYIEGLPSDCTRREVAHIFRPFVGYREVRLVSKEAKHRGD-PLILCFV 200

Query: 195 EFVEAKHARAGMEALQGYKFDDKNPDSPALKIQFAHFP 233
           +F     A   + ALQGYK D+ NP+S  L++QF+ +P
Sbjct: 201 DFANPACAATALSALQGYKVDEINPESSHLRLQFSRYP 237

[Close]

BLAST of Sed0013839 vs. ExPASy Swiss-Prot
Match: G7ID19 (RNA-binding protein 2 OS=Medicago truncatula OX=3880 GN=RBP2 PE=2 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 8.5e-22
Identity = 45/98 (45.92%), Postives = 66/98 (67.35%), Query Frame = 0


Query: 135 EYAPIPAQESNILFVGGLPTNCTRREVGHLFRPFVGYKDIKVVHKEPRRSGDKATVLCFV 194
           E  P+P   S+ L+V GLP++ T+REV H+FRPFVGY+++++V KE +  G    +LCFV
Sbjct: 142 ETIPLPRDASSTLYVEGLPSDSTKREVAHIFRPFVGYREVRLVAKESKHRGGDPLILCFV 201

Query: 195 EFVEAKHARAGMEALQGYKFDDKNPDSPALKIQFAHFP 233
           +F     A   + ALQGYK D+ NP+S  L++QF+  P
Sbjct: 202 DFANPACAATALSALQGYKVDEINPESSYLRLQFSRSP 239

[Close]

BLAST of Sed0013839 vs. ExPASy Swiss-Prot
Match: A1A6K6 (Nuclear speckle RNA-binding protein A OS=Arabidopsis thaliana OX=3702 GN=NSRA PE=2 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 1.9e-21
Identity = 48/115 (41.74%), Postives = 70/115 (60.87%), Query Frame = 0


Query: 122 GHERASSLGLRNAEYAPIPAQESNILFVGGLPTNCTRREVGHLFRPFVGYKDIKVVHKEP 181
           G +    +G RN     +P+  SN L+V GLP+NC+RREV H+FRPFVGY+++++V K+ 
Sbjct: 118 GFDPPEPVGRRN-----LPSDASNTLYVEGLPSNCSRREVAHIFRPFVGYREVRLVTKDS 177

Query: 182 RRSGDKATVLCFVEFVEAKHARAGMEALQGYKFDDKNPDSPALKIQFAHFPFHLP 237
           +       VLCFV+F     A   + ALQGY+ D+   DS  L++QF+  P   P
Sbjct: 178 KHRNGDPIVLCFVDFTNPACAATALSALQGYRMDENESDSKFLRLQFSRKPGSRP 227

[Close]

BLAST of Sed0013839 vs. ExPASy Swiss-Prot
Match: Q6JB11 (Protein MATERNALLY EXPRESSED GENE 5 OS=Zea mays OX=4577 GN=MEG5 PE=2 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 3.6e-20
Identity = 48/118 (40.68%), Postives = 69/118 (58.47%), Query Frame = 0


Query: 106 GIAVDSSLGLMNMADPGHERASSLGLRNAEYAPIPAQESNILFVGGLPTNCTRREVGHLF 165
           G+     +G++ M   G      +G       P+P   S+ L++ GLP NCTRREV H+F
Sbjct: 5   GVDGQRMMGVVGMDSRG------MGYGGRPEPPLPPDASSTLYIEGLPANCTRREVSHIF 64

Query: 166 RPFVGYKDIKVVHKEPRRSGDKATVLCFVEFVEAKHARAGMEALQGYKFDDKNPDSPA 224
           RPFVG++++++V+KE R  G    VLCFV+F     A   +EALQG+  DD N  +PA
Sbjct: 65  RPFVGFREVRLVNKESRHPGGDPHVLCFVDFDNPAQATIALEALQGHVTDDVNVSAPA 116

[Close]

BLAST of Sed0013839 vs. ExPASy TrEMBL
Match: A0A6J1J4R2 (RNA-binding protein 2-like OS=Cucurbita maxima OX=3661 GN=LOC111481239 PE=4 SV=1)

HSP 1 Score: 402.1 bits (1032), Expect = 1.6e-108
Identity = 197/243 (81.07%), Postives = 211/243 (86.83%), Query Frame = 0


Query: 1   MGDDAYTRYIASADLAGSVARSGLSSYTEAPPLTSYHNSTSIDPWRIPPDYLQKDTSSSG 60
           MGDDAYTRY AS D AGSVARSGLS+Y+EAPPLTSY NSTSIDPWRIPPDYLQK+T SSG
Sbjct: 1   MGDDAYTRYAASGDRAGSVARSGLSNYSEAPPLTSYPNSTSIDPWRIPPDYLQKETDSSG 60

Query: 61  PVAYRYTDVGGIRNYSEPVIGGVISGMSATGYTSPFQDSLASQRQGIAVDSSLGLMNMAD 120
           P  Y YTDVGGIRNY EPVIGGV SG+SATG TSPF D+ A QR  IAV SS GLM MAD
Sbjct: 61  PGTYGYTDVGGIRNYPEPVIGGVTSGVSATGNTSPFHDAQARQRHDIAVGSSPGLMAMAD 120

Query: 121 PGHERASSLGLRNAEYAPIPAQESNILFVGGLPTNCTRREVGHLFRPFVGYKDIKVVHKE 180
            GHE+A+SLGLRN E  PI A ESNILFV GLPT+CTRREVGHLFRPF+GYKDI+VVHKE
Sbjct: 121 TGHEKANSLGLRNPERVPISAHESNILFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKE 180

Query: 181 PRRSGDKATVLCFVEFVEAKHARAGMEALQGYKFDDKNPDSPALKIQFAHFPFHLPSNHD 240
           PRR GDKATVLCFVEF+EA+++RA MEALQGYKFDDK PDS ALKIQFAHFPF LPSNHD
Sbjct: 181 PRRRGDKATVLCFVEFIEARYSRAAMEALQGYKFDDKKPDSLALKIQFAHFPFRLPSNHD 240

Query: 241 DGR 244
           D R
Sbjct: 241 DRR 243

[Close]

BLAST of Sed0013839 vs. ExPASy TrEMBL
Match: A0A6J1FN25 (RNA-binding protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111445759 PE=4 SV=1)

HSP 1 Score: 399.8 bits (1026), Expect = 8.0e-108
Identity = 197/243 (81.07%), Postives = 211/243 (86.83%), Query Frame = 0


Query: 1   MGDDAYTRYIASADLAGSVARSGLSSYTEAPPLTSYHNSTSIDPWRIPPDYLQKDTSSSG 60
           MGDDAYTRY ASAD AGSVARSGLS+Y+EAPPLTSY NSTSIDPWRIPPDYL K+T SSG
Sbjct: 1   MGDDAYTRYAASADRAGSVARSGLSNYSEAPPLTSYPNSTSIDPWRIPPDYLLKETDSSG 60

Query: 61  PVAYRYTDVGGIRNYSEPVIGGVISGMSATGYTSPFQDSLASQRQGIAVDSSLGLMNMAD 120
           P  Y YTDVGGIRNY EPVIGGV SG+SATG TSPF D+ A QR  IAV SS GLM MAD
Sbjct: 61  PGTYGYTDVGGIRNYPEPVIGGVTSGVSATGNTSPFHDAQARQRHDIAVGSSPGLMAMAD 120

Query: 121 PGHERASSLGLRNAEYAPIPAQESNILFVGGLPTNCTRREVGHLFRPFVGYKDIKVVHKE 180
            GHE+A+SLGLRN E  PI AQESNILFV GLPT+CTRREVGHLFRPF+GYKDI+VVHKE
Sbjct: 121 TGHEKANSLGLRNPERVPISAQESNILFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKE 180

Query: 181 PRRSGDKATVLCFVEFVEAKHARAGMEALQGYKFDDKNPDSPALKIQFAHFPFHLPSNHD 240
           PRR GDKATVLCFVEF+EA+++RA MEALQGYKFDDK PDS ALKIQFAHFPF LPSN D
Sbjct: 181 PRRRGDKATVLCFVEFIEARYSRAAMEALQGYKFDDKKPDSLALKIQFAHFPFRLPSNQD 240

Query: 241 DGR 244
           D R
Sbjct: 241 DRR 243

[Close]

BLAST of Sed0013839 vs. ExPASy TrEMBL
Match: A0A6J1CBB3 (uncharacterized protein LOC111009933 OS=Momordica charantia OX=3673 GN=LOC111009933 PE=4 SV=1)

HSP 1 Score: 380.2 bits (975), Expect = 6.6e-102
Identity = 191/244 (78.28%), Postives = 207/244 (84.84%), Query Frame = 0


Query: 1   MGDDAYTRYIASADLAGSVARSGLSSYTEAPPL-TSYHNSTSIDPWRIPPDYLQKDTSSS 60
           MGDDAY+RY ASAD  GSVARS  S+Y+EAPPL TSY N+ SID W  PPDYLQKDT+SS
Sbjct: 1   MGDDAYSRYAASAD-RGSVARSSHSTYSEAPPLSTSYPNAASIDQWHTPPDYLQKDTNSS 60

Query: 61  GPVAYRYTDVGGIRNYSEPVIGGVISGMSATGYTSPFQDSLASQRQGIAVDSSLGLMNMA 120
           G  AY Y D+G IRNY EPVIGGV SG++A GYTSPF+DSLASQRQ IAV SS GL+ MA
Sbjct: 61  GTGAYGYADIGDIRNYPEPVIGGVTSGVTAKGYTSPFEDSLASQRQEIAVGSSPGLLGMA 120

Query: 121 DPGHERASSLGLRNAEYAPIPAQESNILFVGGLPTNCTRREVGHLFRPFVGYKDIKVVHK 180
           D GHERASSLGLRNAE  PI  +ESNILFV GLPT+CTRREVGHLFRPF+GYKDI+VVHK
Sbjct: 121 DMGHERASSLGLRNAECVPISTRESNILFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHK 180

Query: 181 EPRRSGDKATVLCFVEFVEAKHARAGMEALQGYKFDDKNPDSPALKIQFAHFPFHLPSNH 240
           EPRRSGDKA VLCFVEFVEAK A A M ALQGYKFDDK PDSPALK+ FAHFPF LPSNH
Sbjct: 181 EPRRSGDKAAVLCFVEFVEAKCAWAAMAALQGYKFDDKKPDSPALKVHFAHFPFRLPSNH 240

Query: 241 DDGR 244
           +DGR
Sbjct: 241 EDGR 243

[Close]

BLAST of Sed0013839 vs. ExPASy TrEMBL
Match: A0A0A0L0S1 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G646270 PE=4 SV=1)

HSP 1 Score: 375.6 bits (963), Expect = 1.6e-100
Identity = 189/246 (76.83%), Postives = 205/246 (83.33%), Query Frame = 0


Query: 1   MGDDAYTRYIASADLAGSVARSGLSSYTEAPPLTSYHNSTSIDPWRI--PPDYLQKDTSS 60
           MGDDAYTRY ASAD AGSVARSGLS+Y+EAPPL SY NSTSID W    PPDY+ +DT+S
Sbjct: 1   MGDDAYTRYAASADRAGSVARSGLSTYSEAPPLASYPNSTSIDQWHTPPPPDYMPRDTNS 60

Query: 61  SGPVAYRYTDVGGIRNYSEPVIGGVISGMSATGYTSPFQDSLASQRQGIAVDSSLGLMNM 120
            GP AY YTD+GG   Y EPVIGGV SG SATGY SPF DSLASQRQ IAV SS G+M  
Sbjct: 61  LGPGAYGYTDLGGNSKYPEPVIGGVTSGGSATGYASPFADSLASQRQDIAVGSSPGVMGR 120

Query: 121 ADPGHERASSLGL-RNAEYAPIPAQESNILFVGGLPTNCTRREVGHLFRPFVGYKDIKVV 180
           AD GHERA+SL L R AE  P P +ESN+LFV GLPT+CTRREVGHLFRPF+GYKDI+VV
Sbjct: 121 ADIGHERANSLNLIRTAECDPSPLRESNVLFVDGLPTDCTRREVGHLFRPFMGYKDIRVV 180

Query: 181 HKEPRRSGDKATVLCFVEFVEAKHARAGMEALQGYKFDDKNPDSPALKIQFAHFPFHLPS 240
           HKEPRR+GDKA VLCFVEFVEAK ++A MEALQGYKFDDK PDSP LKIQFAHFPFHLPS
Sbjct: 181 HKEPRRTGDKAMVLCFVEFVEAKFSQAAMEALQGYKFDDKKPDSPVLKIQFAHFPFHLPS 240

Query: 241 NHDDGR 244
           NHDD R
Sbjct: 241 NHDDRR 246

[Close]

BLAST of Sed0013839 vs. ExPASy TrEMBL
Match: A0A5D3D938 (RNA-binding protein 2-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G001990 PE=4 SV=1)

HSP 1 Score: 374.8 bits (961), Expect = 2.8e-100
Identity = 189/243 (77.78%), Postives = 205/243 (84.36%), Query Frame = 0


Query: 1   MGDDAYTRYIASADLAGSVARSGLSSYTEAPPLTSYHNSTSIDPWRI-PPDYLQKDTSSS 60
           MGDDAYTRY ASAD AGSVARSGLS+Y+EAPPL SY NSTSID W   PPDY+ +DT+S 
Sbjct: 1   MGDDAYTRYAASADRAGSVARSGLSTYSEAPPLASYPNSTSIDQWHTPPPDYMPRDTNSL 60

Query: 61  GPVAYRYTDVGGIRNYSEPVIGGVISGMSATGYTSPFQDSLASQRQGIAVDSSLGLMNMA 120
           GP AY YTD+GG   Y EPVIGGV SG+SATGY SPF DSLASQRQ IAV SS G+M  A
Sbjct: 61  GPGAYGYTDLGGNSKYPEPVIGGVTSGVSATGYASPFADSLASQRQDIAVGSSPGVMGRA 120

Query: 121 DPGHERASSLG-LRNAEYAPIPAQESNILFVGGLPTNCTRREVGHLFRPFVGYKDIKVVH 180
           D GHERA+SL  +R AE  P   +ESNILFV GLPT+CTRREVGHLFRPF+GYKDI+VVH
Sbjct: 121 DIGHERANSLSIIRTAECDPTSLRESNILFVDGLPTDCTRREVGHLFRPFMGYKDIRVVH 180

Query: 181 KEPRRSGDKATVLCFVEFVEAKHARAGMEALQGYKFDDKNPDSPALKIQFAHFPFHLPSN 240
           KEPRRSGDKATVLCFVEFVEAK ++A MEALQGYKFDDK PDSPALKIQFAHFPF LPSN
Sbjct: 181 KEPRRSGDKATVLCFVEFVEAKFSQAAMEALQGYKFDDKKPDSPALKIQFAHFPFRLPSN 240

Query: 241 HDD 242
           HDD
Sbjct: 241 HDD 243

[Close]

BLAST of Sed0013839 vs. TAIR 10
Match: AT1G21320.1 (nucleotide binding;nucleic acid binding )

HSP 1 Score: 110.5 bits (275), Expect = 1.9e-24
Identity = 52/127 (40.94%), Postives = 74/127 (58.27%), Query Frame = 0


Query: 117 NMADPGHERASSLGLRNAEYAPIPAQESNILFVGGLPTNCTRREVGHLFRPFVGYKDIKV 176
           N  D G  +  S+G    E  P+P   SN L+V GLP+NC+RREV H+FRPFVGY+++++
Sbjct: 295 NGRDMGFGQLDSVGRPGREPHPLPPDVSNTLYVEGLPSNCSRREVSHIFRPFVGYREVRL 354

Query: 177 VHKEPRRSGDKATVLCFVEFVEAKHARAGMEALQGYKFDDKNPDSPALKIQFAHFPFHLP 236
           V ++ +      TVLCFV+F  +  A   + ALQ Y+ D+  PDS  L++QF   P   P
Sbjct: 355 VTQDSKHRSGDPTVLCFVDFENSACAATALSALQDYRMDEDEPDSKILRLQFFRNPGPRP 414

Query: 237 SNHDDGR 244
                 R
Sbjct: 415 GQRGGRR 421

[Close]

BLAST of Sed0013839 vs. TAIR 10
Match: AT1G21320.2 (nucleotide binding;nucleic acid binding )

HSP 1 Score: 110.5 bits (275), Expect = 1.9e-24
Identity = 52/127 (40.94%), Postives = 74/127 (58.27%), Query Frame = 0


Query: 117 NMADPGHERASSLGLRNAEYAPIPAQESNILFVGGLPTNCTRREVGHLFRPFVGYKDIKV 176
           N  D G  +  S+G    E  P+P   SN L+V GLP+NC+RREV H+FRPFVGY+++++
Sbjct: 127 NGRDMGFGQLDSVGRPGREPHPLPPDVSNTLYVEGLPSNCSRREVSHIFRPFVGYREVRL 186

Query: 177 VHKEPRRSGDKATVLCFVEFVEAKHARAGMEALQGYKFDDKNPDSPALKIQFAHFPFHLP 236
           V ++ +      TVLCFV+F  +  A   + ALQ Y+ D+  PDS  L++QF   P   P
Sbjct: 187 VTQDSKHRSGDPTVLCFVDFENSACAATALSALQDYRMDEDEPDSKILRLQFFRNPGPRP 246

Query: 237 SNHDDGR 244
                 R
Sbjct: 247 GQRGGRR 253

[Close]

BLAST of Sed0013839 vs. TAIR 10
Match: AT1G76940.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 104.4 bits (259), Expect = 1.3e-22
Identity = 48/115 (41.74%), Postives = 70/115 (60.87%), Query Frame = 0


Query: 122 GHERASSLGLRNAEYAPIPAQESNILFVGGLPTNCTRREVGHLFRPFVGYKDIKVVHKEP 181
           G +    +G RN     +P+  SN L+V GLP+NC+RREV H+FRPFVGY+++++V K+ 
Sbjct: 118 GFDPPEPVGRRN-----LPSDASNTLYVEGLPSNCSRREVAHIFRPFVGYREVRLVTKDS 177

Query: 182 RRSGDKATVLCFVEFVEAKHARAGMEALQGYKFDDKNPDSPALKIQFAHFPFHLP 237
           +       VLCFV+F     A   + ALQGY+ D+   DS  L++QF+  P   P
Sbjct: 178 KHRNGDPIVLCFVDFTNPACAATALSALQGYRMDENESDSKFLRLQFSRKPGSRP 227

[Close]

BLAST of Sed0013839 vs. TAIR 10
Match: AT1G76940.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 104.4 bits (259), Expect = 1.3e-22
Identity = 48/115 (41.74%), Postives = 70/115 (60.87%), Query Frame = 0


Query: 122 GHERASSLGLRNAEYAPIPAQESNILFVGGLPTNCTRREVGHLFRPFVGYKDIKVVHKEP 181
           G +    +G RN     +P+  SN L+V GLP+NC+RREV H+FRPFVGY+++++V K+ 
Sbjct: 64  GFDPPEPVGRRN-----LPSDASNTLYVEGLPSNCSRREVAHIFRPFVGYREVRLVTKDS 123

Query: 182 RRSGDKATVLCFVEFVEAKHARAGMEALQGYKFDDKNPDSPALKIQFAHFPFHLP 237
           +       VLCFV+F     A   + ALQGY+ D+   DS  L++QF+  P   P
Sbjct: 124 KHRNGDPIVLCFVDFTNPACAATALSALQGYRMDENESDSKFLRLQFSRKPGSRP 173

The following BLAST results are available for this feature:

BLAST of Sed0013839 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022982403.1	3.3e-108	81.07	RNA-binding protein 2-like [Cucurbita maxima]	[more]
XP_022939988.1	1.7e-107	81.07	RNA-binding protein 2-like [Cucurbita moschata]	[more]
KAG6608363.1	1.7e-107	81.07	RNA-binding protein 2, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7037705.1	5.3e-106	80.41	RNA-binding protein 2 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_038896813.1	1.2e-105	79.84	RNA-binding protein 2-like isoform X2 [Benincasa hispida]	[more]

BLAST of Sed0013839 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4HWF9	2.6e-23	40.94	Nuclear speckle RNA-binding protein B OS=Arabidopsis thaliana OX=3702 GN=NSRB PE...	[more]
Q8H0P8	2.2e-22	47.96	RNA-binding protein 1 OS=Medicago truncatula OX=3880 GN=RBP1 PE=2 SV=1	[more]
G7ID19	8.5e-22	45.92	RNA-binding protein 2 OS=Medicago truncatula OX=3880 GN=RBP2 PE=2 SV=1	[more]
A1A6K6	1.9e-21	41.74	Nuclear speckle RNA-binding protein A OS=Arabidopsis thaliana OX=3702 GN=NSRA PE...	[more]
Q6JB11	3.6e-20	40.68	Protein MATERNALLY EXPRESSED GENE 5 OS=Zea mays OX=4577 GN=MEG5 PE=2 SV=1	[more]

BLAST of Sed0013839 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J4R2	1.6e-108	81.07	RNA-binding protein 2-like OS=Cucurbita maxima OX=3661 GN=LOC111481239 PE=4 SV=1	[more]
A0A6J1FN25	8.0e-108	81.07	RNA-binding protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111445759 PE=4 SV...	[more]
A0A6J1CBB3	6.6e-102	78.28	uncharacterized protein LOC111009933 OS=Momordica charantia OX=3673 GN=LOC111009...	[more]
A0A0A0L0S1	1.6e-100	76.83	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G646270 PE=4 SV...	[more]
A0A5D3D938	2.8e-100	77.78	RNA-binding protein 2-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]

BLAST of Sed0013839 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G21320.1	1.9e-24	40.94	nucleotide binding;nucleic acid binding	[more]
AT1G21320.2	1.9e-24	40.94	nucleotide binding;nucleic acid binding	[more]
AT1G76940.1	1.3e-22	41.74	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G76940.2	1.3e-22	41.74	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0013839.1	Sed0013839.1	mRNA
Sed0013839.2	Sed0013839.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003676	nucleic acid binding