Sed0013813 (gene) Chayote v1

Overview


Name	Sed0013813
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Zinc finger protein
Location	LG12: 901790 .. 902646 (-)
RNA-Seq Expression	Sed0013813
Synteny	Sed0013813

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAGAAACGTGAATCGCATTCCCTCATTCGGGGCTCCTCCATCATATCGCCGCCGTCCACGGCGTCGCTTCCGTCCTCCATTTTTTCCGGCCACCACAACTTCCCACTCCAAATCCAAATCTCCACTTCGCTCTCTCTCTCTCTCTCTATAAATACATAAATCCATTCTCATCGATGAACCGCCGCTTAATCCCCTTACTCTCTGCTAATCCACAATCGGAATCGGAATCGGAAAACTCGCTTTCTCCGACCGCCATGGGCTACGCCGTAGACTACGCCGACGTTTCTCTCCCGAACGTCTTCCTTTATCTCCTCTTCTTTCTCGGCTACATTCGAAGCCTCATTGTTTCGATCTTCGAATTTCTAGGGCTTTCTGATCTTCTCGAATCCGAAATTCCGAGCTCGATCTTTCACTATCGATCCGAATCGCCGATGTTAATCGACGATTTCGTCCCTGTCGTCAAATTCTCCGACGTTTCCGCCTCCGTCGGAGCCGGATTTTCGCCGGAATGTTGCGCTGTTTGCCTCTGCGAGTTTCAGGACGAAGAGGAGGTTAGGTTTTTGAAGAATTGCAAACATATTTTTCACAAGGAATGTTTGGACCGATGGATGATTCGCGATCGGAAAAGCTGTCCGCTCTGTAGAACCCTAATTCTGCCGGAGGATTTATTCCGCCGCTCTGATTTCTCCGATTGTTCTGAGTTTTCCGGTGACCTTCTCTAAATTTTGTTTTCTTTTAATTAAAAATAATGCTAGTGGCTATGTAAATGAATCAGATTTTGTTTTTGTTCCCTCCAGAGTAAAATAAAAAAATAAATAAAATGATTTCTAATATTTAAAATGGATTTCCATTTAAA

mRNA sequence

GAAGAAACGTGAATCGCATTCCCTCATTCGGGGCTCCTCCATCATATCGCCGCCGTCCACGGCGTCGCTTCCGTCCTCCATTTTTTCCGGCCACCACAACTTCCCACTCCAAATCCAAATCTCCACTTCGCTCTCTCTCTCTCTCTCTATAAATACATAAATCCATTCTCATCGATGAACCGCCGCTTAATCCCCTTACTCTCTGCTAATCCACAATCGGAATCGGAATCGGAAAACTCGCTTTCTCCGACCGCCATGGGCTACGCCGTAGACTACGCCGACGTTTCTCTCCCGAACGTCTTCCTTTATCTCCTCTTCTTTCTCGGCTACATTCGAAGCCTCATTGTTTCGATCTTCGAATTTCTAGGGCTTTCTGATCTTCTCGAATCCGAAATTCCGAGCTCGATCTTTCACTATCGATCCGAATCGCCGATGTTAATCGACGATTTCGTCCCTGTCGTCAAATTCTCCGACGTTTCCGCCTCCGTCGGAGCCGGATTTTCGCCGGAATGTTGCGCTGTTTGCCTCTGCGAGTTTCAGGACGAAGAGGAGGTTAGGTTTTTGAAGAATTGCAAACATATTTTTCACAAGGAATGTTTGGACCGATGGATGATTCGCGATCGGAAAAGCTGTCCGCTCTGTAGAACCCTAATTCTGCCGGAGGATTTATTCCGCCGCTCTGATTTCTCCGATTGTTCTGAGTTTTCCGGTGACCTTCTCTAAATTTTGTTTTCTTTTAATTAAAAATAATGCTAGTGGCTATGTAAATGAATCAGATTTTGTTTTTGTTCCCTCCAGAGTAAAATAAAAAAATAAATAAAATGATTTCTAATATTTAAAATGGATTTCCATTTAAA

Coding sequence (CDS)

ATGAACCGCCGCTTAATCCCCTTACTCTCTGCTAATCCACAATCGGAATCGGAATCGGAAAACTCGCTTTCTCCGACCGCCATGGGCTACGCCGTAGACTACGCCGACGTTTCTCTCCCGAACGTCTTCCTTTATCTCCTCTTCTTTCTCGGCTACATTCGAAGCCTCATTGTTTCGATCTTCGAATTTCTAGGGCTTTCTGATCTTCTCGAATCCGAAATTCCGAGCTCGATCTTTCACTATCGATCCGAATCGCCGATGTTAATCGACGATTTCGTCCCTGTCGTCAAATTCTCCGACGTTTCCGCCTCCGTCGGAGCCGGATTTTCGCCGGAATGTTGCGCTGTTTGCCTCTGCGAGTTTCAGGACGAAGAGGAGGTTAGGTTTTTGAAGAATTGCAAACATATTTTTCACAAGGAATGTTTGGACCGATGGATGATTCGCGATCGGAAAAGCTGTCCGCTCTGTAGAACCCTAATTCTGCCGGAGGATTTATTCCGCCGCTCTGATTTCTCCGATTGTTCTGAGTTTTCCGGTGACCTTCTCTAA

Protein sequence

MNRRLIPLLSANPQSESESENSLSPTAMGYAVDYADVSLPNVFLYLLFFLGYIRSLIVSIFEFLGLSDLLESEIPSSIFHYRSESPMLIDDFVPVVKFSDVSASVGAGFSPECCAVCLCEFQDEEEVRFLKNCKHIFHKECLDRWMIRDRKSCPLCRTLILPEDLFRRSDFSDCSEFSGDLL

Homology

[Close]

BLAST of Sed0013813 vs. NCBI nr
Match: KAA0048956.1 (Zinc finger protein [Cucumis melo var. makuwa])

HSP 1 Score: 259.2 bits (661), Expect = 2.6e-65
Identity = 133/186 (71.51%), Postives = 153/186 (82.26%), Query Frame = 0


Query: 1   MNRRLIPLLSANPQSESESENSLSPTAMGYAVDYADVSLPNVFLYLLFFLGYIRSLIVSI 60
           MNRR+IP L A PQ+E E E SLSPTAMGY V YADV  PN FL+LLFFLGYIRSLIVS+
Sbjct: 1   MNRRIIPFLFAVPQTEPEPEPSLSPTAMGYPVGYADVFFPNAFLHLLFFLGYIRSLIVSL 60

Query: 61  FEFLGLSDLLESEI-----PSSIFHYRSESPMLIDDFVPVVKFSDVSASVGAGFSPECCA 120
           F+FLGLSD LES +     P+SIFH RS S +LI++FVPVVKF+D+ A+V   F PECCA
Sbjct: 61  FQFLGLSDFLESNVVWPENPTSIFHDRSVSTILIEEFVPVVKFTDIIAAV--EFPPECCA 120

Query: 121 VCLCEFQDEEEVRFLKNCKHIFHKECLDRWMIRDRKSCPLCRTLILPED-LFRRSDFSDC 180
           VCLCEF D+EEVRFLKNCKHIFHKECLDRWMIRD++SCPLCRTLI+PE+ +    DFS C
Sbjct: 121 VCLCEFHDDEEVRFLKNCKHIFHKECLDRWMIRDQRSCPLCRTLIVPEESIPPLMDFSGC 180

[Close]

BLAST of Sed0013813 vs. NCBI nr
Match: TYK17611.1 (Zinc finger protein [Cucumis melo var. makuwa])

HSP 1 Score: 258.8 bits (660), Expect = 3.4e-65
Identity = 132/186 (70.97%), Postives = 153/186 (82.26%), Query Frame = 0


Query: 1   MNRRLIPLLSANPQSESESENSLSPTAMGYAVDYADVSLPNVFLYLLFFLGYIRSLIVSI 60
           MNRR+IP L A PQ+E E E SLSPTAMGY V YADV  PN FL+LLFFLGYIRSLIVS+
Sbjct: 1   MNRRIIPFLFAVPQTEPEPEPSLSPTAMGYPVGYADVFFPNAFLHLLFFLGYIRSLIVSL 60

Query: 61  FEFLGLSDLLESEI-----PSSIFHYRSESPMLIDDFVPVVKFSDVSASVGAGFSPECCA 120
           F+FLGLSD LES +     P+SIFH RS S +LI++FVPVVKF+D+ A+V   F PECCA
Sbjct: 61  FQFLGLSDFLESNVVWPENPTSIFHDRSVSTILIEEFVPVVKFTDIIAAV--EFPPECCA 120

Query: 121 VCLCEFQDEEEVRFLKNCKHIFHKECLDRWMIRDRKSCPLCRTLILPED-LFRRSDFSDC 180
           VCLCEF D+EEVRFLKNCKH+FHKECLDRWMIRD++SCPLCRTLI+PE+ +    DFS C
Sbjct: 121 VCLCEFHDDEEVRFLKNCKHVFHKECLDRWMIRDQRSCPLCRTLIVPEESIPPLMDFSGC 180

[Close]

BLAST of Sed0013813 vs. NCBI nr
Match: KGN56500.1 (hypothetical protein Csa_010889 [Cucumis sativus])

HSP 1 Score: 256.1 bits (653), Expect = 2.2e-64
Identity = 130/185 (70.27%), Postives = 154/185 (83.24%), Query Frame = 0


Query: 1   MNRRLIPLLSANPQSESESENSLSPTAMGYAVDYADVSLPNVFLYLLFFLGYIRSLIVSI 60
           MNRR+IPLL A PQ+E E E+SLSPTAMGY + YAD+  PN FL+LLFFLGYIRSLIVS+
Sbjct: 1   MNRRIIPLLFAVPQTEPEPESSLSPTAMGYPIGYADMFFPNAFLHLLFFLGYIRSLIVSL 60

Query: 61  FEFLGLSDLLESEI-----PSSIFHYRSESPMLIDDFVPVVKFSDVSASVGAGFSPECCA 120
           F+FLGLSD LES +     P+SIF+ RS   +LI+ FVPVVKF+D+ A+V   F PECCA
Sbjct: 61  FQFLGLSDFLESNVVWPENPTSIFYDRSVPTILIEKFVPVVKFTDIVAAV--EFPPECCA 120

Query: 121 VCLCEFQDEEEVRFLKNCKHIFHKECLDRWMIRDRKSCPLCRTLILPED-LFRRSDFSDC 180
           VCLCEFQD++EVRFLKNCKHIFHKECLDRWMIRD++SCPLCRTLI+PE+ +    DFSDC
Sbjct: 121 VCLCEFQDDDEVRFLKNCKHIFHKECLDRWMIRDQRSCPLCRTLIVPEESIPPLMDFSDC 180

[Close]

BLAST of Sed0013813 vs. NCBI nr
Match: KAG6597135.1 (Brassinosteroid-responsive RING protein 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 248.1 bits (632), Expect = 6.0e-62
Identity = 127/186 (68.28%), Postives = 146/186 (78.49%), Query Frame = 0


Query: 1   MNRRLIPLLSANPQSESESENSLSPTAMGYAVDYADVSLPNVFLYLLFFLGYIRSLIVSI 60
           MNRR      +  +SE+E+E   SPTAMGY V Y+DV +PN FL+LLFFLGYIRSLI+SI
Sbjct: 1   MNRR-----RSESESETETETPTSPTAMGYPVGYSDVCIPNAFLHLLFFLGYIRSLIISI 60

Query: 61  FEFLGLSDLLESEI-----PSSIFHYRSESPMLIDDFVPVVKFSDVSASVGAGFSPECCA 120
           F FLGLSD LES I     P  IFH RS SP+LID+FVPVVKFSD+  S  AGF PECCA
Sbjct: 61  FRFLGLSDFLESTIVCPQNPPYIFHDRSVSPLLIDEFVPVVKFSDIVVSTRAGFPPECCA 120

Query: 121 VCLCEFQDEEEVRFLKNCKHIFHKECLDRWMIRDRKSCPLCRTLILPED-LFRRSDFSDC 180
           VCLCEFQD+EE+RFLKNCKHIFHK+CLDRWMIRD++SCPLCRTLI+PE+ +    DF  C
Sbjct: 121 VCLCEFQDDEELRFLKNCKHIFHKKCLDRWMIRDQRSCPLCRTLIVPEESIPPLMDFPGC 180

[Close]

BLAST of Sed0013813 vs. NCBI nr
Match: XP_023539428.1 (E3 ubiquitin-protein ligase RHA1B-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 243.0 bits (619), Expect = 1.9e-60
Identity = 125/186 (67.20%), Postives = 144/186 (77.42%), Query Frame = 0


Query: 1   MNRRLIPLLSANPQSESESENSLSPTAMGYAVDYADVSLPNVFLYLLFFLGYIRSLIVSI 60
           MNRR      +  +SE+E+E   SPTAMGY V Y+DV +PN FL+LLFFLGYIRSLI+SI
Sbjct: 1   MNRR-----RSESESETETETPTSPTAMGYPVGYSDVCIPNAFLHLLFFLGYIRSLIISI 60

Query: 61  FEFLGLSDLLESEI-----PSSIFHYRSESPMLIDDFVPVVKFSDVSASVGAGFSPECCA 120
           F FLGLSD LES I     P  IFH RS SP+LID+FVPVVKFSD+  S  AGF  ECCA
Sbjct: 61  FRFLGLSDFLESAIVCPQNPPYIFHDRSVSPLLIDEFVPVVKFSDIVVSTRAGFPSECCA 120

Query: 121 VCLCEFQDEEEVRFLKNCKHIFHKECLDRWMIRDRKSCPLCRTLILPED-LFRRSDFSDC 180
           VCLCEFQD+EE+RFLKNCKHIFHK+CLDRWMIRD++SCPLCR LI+PE+ +    DF  C
Sbjct: 121 VCLCEFQDDEELRFLKNCKHIFHKKCLDRWMIRDQRSCPLCRNLIVPEESIPPLMDFPGC 180

[Close]

BLAST of Sed0013813 vs. ExPASy Swiss-Prot
Match: Q9XF92 (Brassinosteroid-responsive RING protein 1 OS=Arabidopsis thaliana OX=3702 GN=BRH1 PE=2 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 4.4e-31
Identity = 70/147 (47.62%), Postives = 100/147 (68.03%), Query Frame = 0


Query: 28  MGYAVDYADVSLPNVFLYLLFFLGYIRSLIVSIFEFLGLSDLLE--------SEIPSSIF 87
           MG+ V Y +V LP +F+  L  LG+IR+++ SIF FLGLSD LE        +  P+ I 
Sbjct: 1   MGFPVGYTEVFLPKLFVQTLSILGFIRTIVFSIFRFLGLSDFLEMDQTWPDYTSYPTRIP 60

Query: 88  HYRSE-SPMLIDDFVPVVKFSDVSASVGAGFSPECCAVCLCEFQDEEEVRFLKNCKHIFH 147
             RS  S +LI + +PV+KF +++ S      PE CAVCL EF+ E+E+R+L+NC+HIFH
Sbjct: 61  ETRSPFSALLIREILPVIKFEELTNS--GEDLPENCAVCLYEFEGEQEIRWLRNCRHIFH 120

Query: 148 KECLDRWMIRDRKSCPLCRTLILPEDL 166
           + CLDRWM  D+K+CPLCRT  +P+++
Sbjct: 121 RSCLDRWMDHDQKTCPLCRTPFVPDEM 145

[Close]

BLAST of Sed0013813 vs. ExPASy Swiss-Prot
Match: Q9SUS4 (Probable E3 ubiquitin-protein ligase RHA1A OS=Arabidopsis thaliana OX=3702 GN=RHA1A PE=2 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 2.0e-20
Identity = 51/158 (32.28%), Postives = 91/158 (57.59%), Query Frame = 0


Query: 28  MGYAVDY-ADVSLPNVFLYLLFFLGYIRSLIVSIFEFLGLSDLL---ESEIPSSIFHYRS 87
           MG   D+  ++ +P+  L +L+ +G+ R ++ ++  ++GL   L   E+  P    H  S
Sbjct: 1   MGLPEDFITELQIPSYILKILYVIGFFRDIVDALCPYIGLPRFLDHNETSAPDLTRHALS 60

Query: 88  ESPMLIDDFVPVVKFSDVSASVGAGFSPECCAVCLCEFQDEEEVRFLKNCKHIFHKECLD 147
            S  L ++ +PVV+FSD+          +CC VCL +F+ +++VR L  C H+FH  CLD
Sbjct: 61  TSASLANELIPVVRFSDLPTD-----PEDCCTVCLSDFESDDKVRQLPKCGHVFHHYCLD 120

Query: 148 RWMI-RDRKSCPLCRTLILPEDLFRRSDFSDCSEFSGD 181
           RW++  ++  CP+CR   LP++ + +SD+   S++  D
Sbjct: 121 RWIVDYNKMKCPVCRHRFLPKEKYTQSDWGSGSDWFSD 153

[Close]

BLAST of Sed0013813 vs. ExPASy Swiss-Prot
Match: Q9SUS5 (E3 ubiquitin-protein ligase RHA1B OS=Arabidopsis thaliana OX=3702 GN=RHA1B PE=2 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 4.2e-18
Identity = 47/141 (33.33%), Postives = 78/141 (55.32%), Query Frame = 0


Query: 28  MGYAVDYADVSLPNVFLYLLFFLGYIRSLIVSIFEFLGLSDLLESEIPSSIFHYR---SE 87
           MG   D+ ++ +P   L  L+ +G+ R ++ ++  ++GL   L+    S     R   S 
Sbjct: 1   MGLPTDFKELQIPGYVLKTLYVIGFFRDMVDALCPYIGLPSFLDHNETSRSDPTRLALST 60

Query: 88  SPMLIDDFVPVVKFSDVSASVGAGFSPECCAVCLCEFQDEEEVRFLKNCKHIFHKECLDR 147
           S  L ++ +PVV+FSD+          +CC VCL +F  ++++R L  C H+FH  CLDR
Sbjct: 61  SATLANELIPVVRFSDLLTD-----PEDCCTVCLSDFVSDDKIRQLPKCGHVFHHRCLDR 120

Query: 148 WMIRDRK-SCPLCRTLILPED 165
           W++   K +CP+CR   LPE+
Sbjct: 121 WIVDCNKITCPICRNRFLPEE 136

[Close]

BLAST of Sed0013813 vs. ExPASy Swiss-Prot
Match: Q67YI6 (RING-H2 finger protein ATL65 OS=Arabidopsis thaliana OX=3702 GN=ATL65 PE=2 SV=2)

HSP 1 Score: 73.9 bits (180), Expect = 2.0e-12
Identity = 43/100 (43.00%), Postives = 55/100 (55.00%), Query Frame = 0


Query: 72  SEIPSSIFHYRSESPMLIDDFV----PVVKFSDVSA----SVGAGFSPEC--CAVCLCEF 131
           S  P   FHY S SP  +DD V    P+  +S  +     +VG   +  C  CAVCL EF
Sbjct: 104 SPFPFDSFHYSSYSPYGLDDSVIKTLPLFLYSAAACTGKPAVGKTSAANCRDCAVCLLEF 163

Query: 132 QDEEEVRFLKNCKHIFHKECLDRWMIRDRKSCPLCRTLIL 162
           ++ + VR L  C H FH EC+D W +R   +CPLCRT IL
Sbjct: 164 EEGDYVRTLPLCFHAFHLECIDEW-LRSHPNCPLCRTAIL 202

[Close]

BLAST of Sed0013813 vs. ExPASy Swiss-Prot
Match: Q9FL07 (RING-H2 finger protein ATL46 OS=Arabidopsis thaliana OX=3702 GN=ATL46 PE=2 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.5e-10
Identity = 53/169 (31.36%), Postives = 80/169 (47.34%), Query Frame = 0


Query: 7   PLLSANPQSESESENSLSPTAMGYAVDYADVSLPNVFLYLL--FFLGYIRSLIVS---IF 66
           P+LS        S N +SP  +   V  A +   +  L+LL  F + +  +   S    F
Sbjct: 25  PILSPPSPPPPSSGNRISPAVLFVIVILAVLFFISGLLHLLVRFLIKHPSATASSRSNRF 84

Query: 67  EFLGLSDLLESEIPSSIFHYR-SESPMLIDDFVPVVKFSDVSASVGAG------FSPECC 126
             +  SD L+ ++   +FH   S       D +PV  + ++  S G G        P  C
Sbjct: 85  PEISTSDALQRQL-QQLFHLNDSGLDQAFIDALPVFHYKEIVGSAGGGGGNGAAQEPFDC 144

Query: 127 AVCLCEFQDEEEVRFLKNCKHIFHKECLDRWMIRDRKSCPLCR-TLILP 163
           AVCLCEF +++++R L  C H FH  C+D W ++   +CPLCR TL  P
Sbjct: 145 AVCLCEFSEKDKLRLLPMCSHAFHLNCIDTW-LQSNSTCPLCRGTLFSP 191

[Close]

BLAST of Sed0013813 vs. ExPASy TrEMBL
Match: A0A5A7U3X1 (Zinc finger protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold171G001770 PE=4 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 1.3e-65
Identity = 133/186 (71.51%), Postives = 153/186 (82.26%), Query Frame = 0


Query: 1   MNRRLIPLLSANPQSESESENSLSPTAMGYAVDYADVSLPNVFLYLLFFLGYIRSLIVSI 60
           MNRR+IP L A PQ+E E E SLSPTAMGY V YADV  PN FL+LLFFLGYIRSLIVS+
Sbjct: 1   MNRRIIPFLFAVPQTEPEPEPSLSPTAMGYPVGYADVFFPNAFLHLLFFLGYIRSLIVSL 60

Query: 61  FEFLGLSDLLESEI-----PSSIFHYRSESPMLIDDFVPVVKFSDVSASVGAGFSPECCA 120
           F+FLGLSD LES +     P+SIFH RS S +LI++FVPVVKF+D+ A+V   F PECCA
Sbjct: 61  FQFLGLSDFLESNVVWPENPTSIFHDRSVSTILIEEFVPVVKFTDIIAAV--EFPPECCA 120

Query: 121 VCLCEFQDEEEVRFLKNCKHIFHKECLDRWMIRDRKSCPLCRTLILPED-LFRRSDFSDC 180
           VCLCEF D+EEVRFLKNCKHIFHKECLDRWMIRD++SCPLCRTLI+PE+ +    DFS C
Sbjct: 121 VCLCEFHDDEEVRFLKNCKHIFHKECLDRWMIRDQRSCPLCRTLIVPEESIPPLMDFSGC 180

[Close]

BLAST of Sed0013813 vs. ExPASy TrEMBL
Match: A0A5D3D061 (Zinc finger protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G004810 PE=4 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 1.7e-65
Identity = 132/186 (70.97%), Postives = 153/186 (82.26%), Query Frame = 0


Query: 1   MNRRLIPLLSANPQSESESENSLSPTAMGYAVDYADVSLPNVFLYLLFFLGYIRSLIVSI 60
           MNRR+IP L A PQ+E E E SLSPTAMGY V YADV  PN FL+LLFFLGYIRSLIVS+
Sbjct: 1   MNRRIIPFLFAVPQTEPEPEPSLSPTAMGYPVGYADVFFPNAFLHLLFFLGYIRSLIVSL 60

Query: 61  FEFLGLSDLLESEI-----PSSIFHYRSESPMLIDDFVPVVKFSDVSASVGAGFSPECCA 120
           F+FLGLSD LES +     P+SIFH RS S +LI++FVPVVKF+D+ A+V   F PECCA
Sbjct: 61  FQFLGLSDFLESNVVWPENPTSIFHDRSVSTILIEEFVPVVKFTDIIAAV--EFPPECCA 120

Query: 121 VCLCEFQDEEEVRFLKNCKHIFHKECLDRWMIRDRKSCPLCRTLILPED-LFRRSDFSDC 180
           VCLCEF D+EEVRFLKNCKH+FHKECLDRWMIRD++SCPLCRTLI+PE+ +    DFS C
Sbjct: 121 VCLCEFHDDEEVRFLKNCKHVFHKECLDRWMIRDQRSCPLCRTLIVPEESIPPLMDFSGC 180

[Close]

BLAST of Sed0013813 vs. ExPASy TrEMBL
Match: A0A0A0L3J4 (Zinc finger protein OS=Cucumis sativus OX=3659 GN=Csa_3G121750 PE=4 SV=1)

HSP 1 Score: 256.1 bits (653), Expect = 1.1e-64
Identity = 130/185 (70.27%), Postives = 154/185 (83.24%), Query Frame = 0


Query: 1   MNRRLIPLLSANPQSESESENSLSPTAMGYAVDYADVSLPNVFLYLLFFLGYIRSLIVSI 60
           MNRR+IPLL A PQ+E E E+SLSPTAMGY + YAD+  PN FL+LLFFLGYIRSLIVS+
Sbjct: 1   MNRRIIPLLFAVPQTEPEPESSLSPTAMGYPIGYADMFFPNAFLHLLFFLGYIRSLIVSL 60

Query: 61  FEFLGLSDLLESEI-----PSSIFHYRSESPMLIDDFVPVVKFSDVSASVGAGFSPECCA 120
           F+FLGLSD LES +     P+SIF+ RS   +LI+ FVPVVKF+D+ A+V   F PECCA
Sbjct: 61  FQFLGLSDFLESNVVWPENPTSIFYDRSVPTILIEKFVPVVKFTDIVAAV--EFPPECCA 120

Query: 121 VCLCEFQDEEEVRFLKNCKHIFHKECLDRWMIRDRKSCPLCRTLILPED-LFRRSDFSDC 180
           VCLCEFQD++EVRFLKNCKHIFHKECLDRWMIRD++SCPLCRTLI+PE+ +    DFSDC
Sbjct: 121 VCLCEFQDDDEVRFLKNCKHIFHKECLDRWMIRDQRSCPLCRTLIVPEESIPPLMDFSDC 180

[Close]

BLAST of Sed0013813 vs. ExPASy TrEMBL
Match: A0A6J1D2I3 (E3 ubiquitin-protein ligase RHA1B-like OS=Momordica charantia OX=3673 GN=LOC111016398 PE=4 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 1.9e-53
Identity = 116/187 (62.03%), Postives = 137/187 (73.26%), Query Frame = 0


Query: 1   MNRRLIPLLSANPQSESESENSLSPTAMGYAVDYADVSLPNVFLYLLFFLGYIRSLIVSI 60
           MNR  IP         +   + +SP AMGY V Y  V  PN FL+LLFFLGY+RSLIVS+
Sbjct: 1   MNRHRIP---------NREPSVISPIAMGYPVGYGHVFFPNAFLHLLFFLGYLRSLIVSL 60

Query: 61  FEFLGLSDLLES-----EIPSSIFHYRS-ESPMLIDDFVPVVKFSDVSASVGAGFSPECC 120
           F FLGLSD LE+     E  +SIFH RS  S +LI++FVPVVKFSD++ +VG G   E C
Sbjct: 61  FRFLGLSDFLETGVVWPESQTSIFHDRSVVSAILIEEFVPVVKFSDIATNVGIGSPTESC 120

Query: 121 AVCLCEFQDEEEVRFLKNCKHIFHKECLDRWMIRDRKSCPLCRTLILPEDLF-RRSDFSD 180
           AVCLCEF+DEEEVR LKNCKHIFHKECLDRWMIRD++SCPLCRTL+LP++   +  DFS 
Sbjct: 121 AVCLCEFEDEEEVRCLKNCKHIFHKECLDRWMIRDQRSCPLCRTLVLPDEFIPQLPDFSG 178

[Close]

BLAST of Sed0013813 vs. ExPASy TrEMBL
Match: A0A6J1E8G9 (E3 ubiquitin-protein ligase RHA1B-like OS=Cucurbita moschata OX=3662 GN=LOC111431816 PE=4 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 2.0e-50
Identity = 103/159 (64.78%), Postives = 122/159 (76.73%), Query Frame = 0


Query: 28  MGYAVDYADVSLPNVFLYLLFFLGYIRSLIVSIFEFLGLSDLLESEI-----PSSIFHYR 87
           MGY V YADV   N FL+LL FLGYIRSLI+S++  LGL D LES +     P+ I    
Sbjct: 1   MGYPVGYADVFFSNAFLHLLVFLGYIRSLIISLYRILGLPDFLESSVVWPQNPTPIIDDH 60

Query: 88  SESPMLIDDFVPVVKFSDVSASVGAGFSPECCAVCLCEFQDEEEVRFLKNCKHIFHKECL 147
           S  P+ I++F P+VKFSD+  + GAGF PECCAVCLCEFQD+EEVRFLKNCKHIFHKECL
Sbjct: 61  SVLPIRIEEFFPMVKFSDIFDAAGAGFPPECCAVCLCEFQDDEEVRFLKNCKHIFHKECL 120

Query: 148 DRWMIRDRKSCPLCRTLILPED-LFRRSDFSDCSEFSGD 181
           D WMIRD++SCPLCRTLI+PE+ +    DF+ CSEFSGD
Sbjct: 121 DGWMIRDQRSCPLCRTLIVPEESMPALVDFAGCSEFSGD 159

[Close]

BLAST of Sed0013813 vs. TAIR 10
Match: AT3G61460.1 (brassinosteroid-responsive RING-H2 )

HSP 1 Score: 136.0 bits (341), Expect = 3.1e-32
Identity = 70/147 (47.62%), Postives = 100/147 (68.03%), Query Frame = 0


Query: 28  MGYAVDYADVSLPNVFLYLLFFLGYIRSLIVSIFEFLGLSDLLE--------SEIPSSIF 87
           MG+ V Y +V LP +F+  L  LG+IR+++ SIF FLGLSD LE        +  P+ I 
Sbjct: 1   MGFPVGYTEVFLPKLFVQTLSILGFIRTIVFSIFRFLGLSDFLEMDQTWPDYTSYPTRIP 60

Query: 88  HYRSE-SPMLIDDFVPVVKFSDVSASVGAGFSPECCAVCLCEFQDEEEVRFLKNCKHIFH 147
             RS  S +LI + +PV+KF +++ S      PE CAVCL EF+ E+E+R+L+NC+HIFH
Sbjct: 61  ETRSPFSALLIREILPVIKFEELTNS--GEDLPENCAVCLYEFEGEQEIRWLRNCRHIFH 120

Query: 148 KECLDRWMIRDRKSCPLCRTLILPEDL 166
           + CLDRWM  D+K+CPLCRT  +P+++
Sbjct: 121 RSCLDRWMDHDQKTCPLCRTPFVPDEM 145

[Close]

BLAST of Sed0013813 vs. TAIR 10
Match: AT1G63840.1 (RING/U-box superfamily protein )

HSP 1 Score: 125.9 bits (315), Expect = 3.2e-29
Identity = 69/166 (41.57%), Postives = 101/166 (60.84%), Query Frame = 0


Query: 28  MGYAVDYADVSLPNVFLYLLFFLGYIRSLIVSIFEFLGLSDLLESE-------IPSSIFH 87
           MG+ V Y+++ LP +F YLL FLG IR LI ++F+ +GL D LE E        P     
Sbjct: 1   MGFPVGYSELLLPKIFFYLLSFLGLIRKLISTMFKIIGLPDFLEPEPVSTSWPDPPPTLT 60

Query: 88  YRSESPMLIDDFVPVVKFSDVSASVGAGFSPECCAVCLCEFQDEEEVRFLKNCKHIFHKE 147
               + +L  + +PVV+FSD++         ECCAVCL +F++++E+R L NC+HIFH+ 
Sbjct: 61  KPDSAAILAGEMLPVVRFSDINRP-----ESECCAVCLYDFENDDEIRRLTNCRHIFHRG 120

Query: 148 CLDRWMI-RDRKSCPLCRTLILPEDL---FRRSDFSDCSEFSGDLL 183
           CLDRWM+  ++ +CPLCRT  +P+ L   F +  +S  S  S  LL
Sbjct: 121 CLDRWMMGYNQMTCPLCRTQFIPDHLQLEFNQRLWSQSSAVSSQLL 161

[Close]

BLAST of Sed0013813 vs. TAIR 10
Match: AT5G41400.1 (RING/U-box superfamily protein )

HSP 1 Score: 120.2 bits (300), Expect = 1.8e-27
Identity = 67/158 (42.41%), Postives = 97/158 (61.39%), Query Frame = 0


Query: 28  MGYAVDYADVSLPNVFLYLLFFLGYIRSLIVSIFEFLGLSDLLESEIPSS---------- 87
           MGY V Y ++ LP +FL+LL  LG IR+LI + F  LGL D LES+  SS          
Sbjct: 1   MGYPVGYTELLLPRIFLHLLSLLGLIRTLIDTGFRILGLPDFLESDPVSSSSSWLEPPYM 60

Query: 88  --IFHYRSESPM-------LIDDFVPVVKFSDVSASVGAGFSPECCAVCLCEFQDEEEVR 147
               H+  ES         L  + +PV++FS+++   G G   +CCAVCL EF++++E+R
Sbjct: 61  STAAHHHQESSFFFPVAARLAGEILPVIRFSELTRP-GFGSGSDCCAVCLHEFENDDEIR 120

Query: 148 FLKNCKHIFHKECLDRWMI-RDRKSCPLCRTLILPEDL 166
            L NC+HIFH+ CLDRWM+  ++ +CPLCRT  + ++L
Sbjct: 121 RLTNCQHIFHRSCLDRWMMGYNQMTCPLCRTPFISDEL 157

[Close]

BLAST of Sed0013813 vs. TAIR 10
Match: AT4G11370.1 (RING-H2 finger A1A )

HSP 1 Score: 100.5 bits (249), Expect = 1.4e-21
Identity = 51/158 (32.28%), Postives = 91/158 (57.59%), Query Frame = 0


Query: 28  MGYAVDY-ADVSLPNVFLYLLFFLGYIRSLIVSIFEFLGLSDLL---ESEIPSSIFHYRS 87
           MG   D+  ++ +P+  L +L+ +G+ R ++ ++  ++GL   L   E+  P    H  S
Sbjct: 1   MGLPEDFITELQIPSYILKILYVIGFFRDIVDALCPYIGLPRFLDHNETSAPDLTRHALS 60

Query: 88  ESPMLIDDFVPVVKFSDVSASVGAGFSPECCAVCLCEFQDEEEVRFLKNCKHIFHKECLD 147
            S  L ++ +PVV+FSD+          +CC VCL +F+ +++VR L  C H+FH  CLD
Sbjct: 61  TSASLANELIPVVRFSDLPTD-----PEDCCTVCLSDFESDDKVRQLPKCGHVFHHYCLD 120

Query: 148 RWMI-RDRKSCPLCRTLILPEDLFRRSDFSDCSEFSGD 181
           RW++  ++  CP+CR   LP++ + +SD+   S++  D
Sbjct: 121 RWIVDYNKMKCPVCRHRFLPKEKYTQSDWGSGSDWFSD 153

[Close]

BLAST of Sed0013813 vs. TAIR 10
Match: AT4G11360.1 (RING-H2 finger A1B )

HSP 1 Score: 92.8 bits (229), Expect = 3.0e-19
Identity = 47/141 (33.33%), Postives = 78/141 (55.32%), Query Frame = 0


Query: 28  MGYAVDYADVSLPNVFLYLLFFLGYIRSLIVSIFEFLGLSDLLESEIPSSIFHYR---SE 87
           MG   D+ ++ +P   L  L+ +G+ R ++ ++  ++GL   L+    S     R   S 
Sbjct: 1   MGLPTDFKELQIPGYVLKTLYVIGFFRDMVDALCPYIGLPSFLDHNETSRSDPTRLALST 60

Query: 88  SPMLIDDFVPVVKFSDVSASVGAGFSPECCAVCLCEFQDEEEVRFLKNCKHIFHKECLDR 147
           S  L ++ +PVV+FSD+          +CC VCL +F  ++++R L  C H+FH  CLDR
Sbjct: 61  SATLANELIPVVRFSDLLTD-----PEDCCTVCLSDFVSDDKIRQLPKCGHVFHHRCLDR 120

Query: 148 WMIRDRK-SCPLCRTLILPED 165
           W++   K +CP+CR   LPE+
Sbjct: 121 WIVDCNKITCPICRNRFLPEE 136

The following BLAST results are available for this feature:

BLAST of Sed0013813 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0048956.1	2.6e-65	71.51	Zinc finger protein [Cucumis melo var. makuwa]	[more]
TYK17611.1	3.4e-65	70.97	Zinc finger protein [Cucumis melo var. makuwa]	[more]
KGN56500.1	2.2e-64	70.27	hypothetical protein Csa_010889 [Cucumis sativus]	[more]
KAG6597135.1	6.0e-62	68.28	Brassinosteroid-responsive RING protein 1, partial [Cucurbita argyrosperma subsp...	[more]
XP_023539428.1	1.9e-60	67.20	E3 ubiquitin-protein ligase RHA1B-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Sed0013813 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9XF92	4.4e-31	47.62	Brassinosteroid-responsive RING protein 1 OS=Arabidopsis thaliana OX=3702 GN=BRH...	[more]
Q9SUS4	2.0e-20	32.28	Probable E3 ubiquitin-protein ligase RHA1A OS=Arabidopsis thaliana OX=3702 GN=RH...	[more]
Q9SUS5	4.2e-18	33.33	E3 ubiquitin-protein ligase RHA1B OS=Arabidopsis thaliana OX=3702 GN=RHA1B PE=2 ...	[more]
Q67YI6	2.0e-12	43.00	RING-H2 finger protein ATL65 OS=Arabidopsis thaliana OX=3702 GN=ATL65 PE=2 SV=2	[more]
Q9FL07	2.5e-10	31.36	RING-H2 finger protein ATL46 OS=Arabidopsis thaliana OX=3702 GN=ATL46 PE=2 SV=1	[more]

BLAST of Sed0013813 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U3X1	1.3e-65	71.51	Zinc finger protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold171G...	[more]
A0A5D3D061	1.7e-65	70.97	Zinc finger protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G...	[more]
A0A0A0L3J4	1.1e-64	70.27	Zinc finger protein OS=Cucumis sativus OX=3659 GN=Csa_3G121750 PE=4 SV=1	[more]
A0A6J1D2I3	1.9e-53	62.03	E3 ubiquitin-protein ligase RHA1B-like OS=Momordica charantia OX=3673 GN=LOC1110...	[more]
A0A6J1E8G9	2.0e-50	64.78	E3 ubiquitin-protein ligase RHA1B-like OS=Cucurbita moschata OX=3662 GN=LOC11143...	[more]

BLAST of Sed0013813 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G61460.1	3.1e-32	47.62	brassinosteroid-responsive RING-H2	[more]
AT1G63840.1	3.2e-29	41.57	RING/U-box superfamily protein	[more]
AT5G41400.1	1.8e-27	42.41	RING/U-box superfamily protein	[more]
AT4G11370.1	1.4e-21	32.28	RING-H2 finger A1A	[more]
AT4G11360.1	3.0e-19	33.33	RING-H2 finger A1B	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 114..156 e-value: 3.8E-6 score: 36.4
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 114..157 e-value: 2.2E-11 score: 43.9
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 114..157 score: 12.784338
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 82..161 e-value: 2.7E-17 score: 64.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 7..22
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22
None	No IPR available	PANTHER	PTHR45969	RING ZINC FINGER PROTEIN-RELATED	coord: 28..165
None	No IPR available	PANTHER	PTHR45969:SF10	BRH1 RING FINGER PROTEIN	coord: 28..165
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 113..162

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0013813.1	Sed0013813.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0061630	ubiquitin protein ligase activity