Sed0013751 (gene) Chayote v1

Overview


Name	Sed0013751
Type	gene
Organism	Sechium edule (Chayote v1)
Description	50S ribosomal protein L7/L12
Location	LG10: 7830474 .. 7831070 (+)
RNA-Seq Expression	Sed0013751
Synteny	Sed0013751

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAAATCTCCGAATTCTTTCCCTTCATCTCTCGAGGATTCGCAGAACTCAAAACCCTTGCTCTGATTCTCCGTCTAATCTTCTAGGTTCGGAACGATTGACATCTTCTTCATTGCTAAACCGCCGGAATTACACCACTGCTTCGCCGGAACCAAGACCGGCCCCTACAGAGAGAGTTTCGGCCATTGTGGATGAGATCTCCGGTCTCACGCTACTCGAGGTTGCGGACCTGACGGAGGTTCTTCGAGAGAAATTGGATGTGAAGGATATGCCGGTGATGGCGGTGATGATGCCCGGAATGGGGTTCGGCGGCTTGCAAGGCGCCGCCGCCAAGGGTGGTGCTGGAGCGAAAGGCGGTGGTGAGGAGAAGAAGGCGGAGAAGACGGCGTTTGATGTGAAGCTTGAAGGTTTCGATGCTGCGTCGAAGATCAAGGTGATTAAGGAAGTGCGGACGTTTACGAATTTGGGGTTGAAGGAGGCTAAGGATTTGGTGGAGAAAGCGCCAACCCTTCTGAAGAAGGGAGTGACGAAAGAGGAAGCTGATACGATTATTGCCAAGATGAAGGATGTTGGCGCCAAAGTTTCAATGGAGTGA

mRNA sequence

ATGAGAAATCTCCGAATTCTTTCCCTTCATCTCTCGAGGATTCGCAGAACTCAAAACCCTTGCTCTGATTCTCCGTCTAATCTTCTAGGTTCGGAACGATTGACATCTTCTTCATTGCTAAACCGCCGGAATTACACCACTGCTTCGCCGGAACCAAGACCGGCCCCTACAGAGAGAGTTTCGGCCATTGTGGATGAGATCTCCGGTCTCACGCTACTCGAGGTTGCGGACCTGACGGAGGTTCTTCGAGAGAAATTGGATGTGAAGGATATGCCGGTGATGGCGGTGATGATGCCCGGAATGGGGTTCGGCGGCTTGCAAGGCGCCGCCGCCAAGGGTGGTGCTGGAGCGAAAGGCGGTGGTGAGGAGAAGAAGGCGGAGAAGACGGCGTTTGATGTGAAGCTTGAAGGTTTCGATGCTGCGTCGAAGATCAAGGTGATTAAGGAAGTGCGGACGTTTACGAATTTGGGGTTGAAGGAGGCTAAGGATTTGGTGGAGAAAGCGCCAACCCTTCTGAAGAAGGGAGTGACGAAAGAGGAAGCTGATACGATTATTGCCAAGATGAAGGATGTTGGCGCCAAAGTTTCAATGGAGTGA

Coding sequence (CDS)

ATGAGAAATCTCCGAATTCTTTCCCTTCATCTCTCGAGGATTCGCAGAACTCAAAACCCTTGCTCTGATTCTCCGTCTAATCTTCTAGGTTCGGAACGATTGACATCTTCTTCATTGCTAAACCGCCGGAATTACACCACTGCTTCGCCGGAACCAAGACCGGCCCCTACAGAGAGAGTTTCGGCCATTGTGGATGAGATCTCCGGTCTCACGCTACTCGAGGTTGCGGACCTGACGGAGGTTCTTCGAGAGAAATTGGATGTGAAGGATATGCCGGTGATGGCGGTGATGATGCCCGGAATGGGGTTCGGCGGCTTGCAAGGCGCCGCCGCCAAGGGTGGTGCTGGAGCGAAAGGCGGTGGTGAGGAGAAGAAGGCGGAGAAGACGGCGTTTGATGTGAAGCTTGAAGGTTTCGATGCTGCGTCGAAGATCAAGGTGATTAAGGAAGTGCGGACGTTTACGAATTTGGGGTTGAAGGAGGCTAAGGATTTGGTGGAGAAAGCGCCAACCCTTCTGAAGAAGGGAGTGACGAAAGAGGAAGCTGATACGATTATTGCCAAGATGAAGGATGTTGGCGCCAAAGTTTCAATGGAGTGA

Protein sequence

MRNLRILSLHLSRIRRTQNPCSDSPSNLLGSERLTSSSLLNRRNYTTASPEPRPAPTERVSAIVDEISGLTLLEVADLTEVLREKLDVKDMPVMAVMMPGMGFGGLQGAAAKGGAGAKGGGEEKKAEKTAFDVKLEGFDAASKIKVIKEVRTFTNLGLKEAKDLVEKAPTLLKKGVTKEEADTIIAKMKDVGAKVSME

Homology

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BLAST of Sed0013751 vs. NCBI nr
Match: KAG6594805.1 (hypothetical protein SDJN03_11358, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 301.2 bits (770), Expect = 6.5e-78
Identity = 176/204 (86.27%), Postives = 184/204 (90.20%), Query Frame = 0


Query: 1   MRNLRILSLHLSRIRR--TQNPCSDSPS----NLLGSERLTSSSLLNRRNYTTASPEPRP 60
           MR+LR +S HLSR+RR   QN  SDSPS    NLLG ERLTSSSLLN RNYT ASPE +P
Sbjct: 1   MRHLRSISSHLSRVRRIFAQNSASDSPSTCNLNLLGLERLTSSSLLNHRNYTVASPESKP 60

Query: 61  APTERVSAIVDEISGLTLLEVADLTEVLREKLDVKDMPVMAVMMPGMGFGGLQGAAAKGG 120
           AP+ERV+AIVDEISGLTLLEVADLTEVLREKLDVKDMPVMAVMMPGMGFGGLQ  A KGG
Sbjct: 61  APSERVTAIVDEISGLTLLEVADLTEVLREKLDVKDMPVMAVMMPGMGFGGLQN-AGKGG 120

Query: 121 AGAKGGGEEKKAEKTAFDVKLEGFDAASKIKVIKEVRTFTNLGLKEAKDLVEKAPTLLKK 180
           +GAK GGEEKKAEKTAFDVKLE FDAASKIKVIKEVRTFTNLGLKEAKDLVEKAPTLLKK
Sbjct: 121 SGAK-GGEEKKAEKTAFDVKLEAFDAASKIKVIKEVRTFTNLGLKEAKDLVEKAPTLLKK 180

Query: 181 GVTKEEADTIIAKMKDVGAKVSME 199
           GVTKEEADTIIAKMK+VGAKVSME
Sbjct: 181 GVTKEEADTIIAKMKEVGAKVSME 202

[Close]

BLAST of Sed0013751 vs. NCBI nr
Match: XP_023003672.1 (uncharacterized protein LOC111497194 [Cucurbita maxima])

HSP 1 Score: 301.2 bits (770), Expect = 6.5e-78
Identity = 176/204 (86.27%), Postives = 184/204 (90.20%), Query Frame = 0


Query: 1   MRNLRILSLHLSRIRRT--QNPCSDSPS----NLLGSERLTSSSLLNRRNYTTASPEPRP 60
           MR+LR +S HLSR+RRT  QN  SDSPS    NLLG ERLTSSSLLN RNYT ASPE +P
Sbjct: 1   MRHLRSISSHLSRVRRTFAQNSASDSPSTCNLNLLGLERLTSSSLLNHRNYTIASPESKP 60

Query: 61  APTERVSAIVDEISGLTLLEVADLTEVLREKLDVKDMPVMAVMMPGMGFGGLQGAAAKGG 120
           AP+ERV+AIVDEISGLTLLEVADLTEVLREKLDVKDMPVMAVMMPGMGFGGLQ    KGG
Sbjct: 61  APSERVTAIVDEISGLTLLEVADLTEVLREKLDVKDMPVMAVMMPGMGFGGLQN-TGKGG 120

Query: 121 AGAKGGGEEKKAEKTAFDVKLEGFDAASKIKVIKEVRTFTNLGLKEAKDLVEKAPTLLKK 180
           +GAK GGEEKKAEKTAFDVKLE FDAASKIKVIKEVRTFTNLGLKEAKDLVEKAPTLLKK
Sbjct: 121 SGAK-GGEEKKAEKTAFDVKLEAFDAASKIKVIKEVRTFTNLGLKEAKDLVEKAPTLLKK 180

Query: 181 GVTKEEADTIIAKMKDVGAKVSME 199
           GVTKEEADTIIAKMK+VGAKVSME
Sbjct: 181 GVTKEEADTIIAKMKEVGAKVSME 202

[Close]

BLAST of Sed0013751 vs. NCBI nr
Match: XP_023518906.1 (uncharacterized protein LOC111782287 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 300.8 bits (769), Expect = 8.5e-78
Identity = 176/204 (86.27%), Postives = 184/204 (90.20%), Query Frame = 0


Query: 1   MRNLRILSLHLSRIRRT--QNPCSDSPS----NLLGSERLTSSSLLNRRNYTTASPEPRP 60
           MR+LR +S HLSR+RRT  QN  SDSPS    NLLG ERLTS SLLN RNYT ASPE +P
Sbjct: 1   MRHLRSISSHLSRVRRTFAQNSASDSPSTCNLNLLGLERLTSFSLLNHRNYTVASPESKP 60

Query: 61  APTERVSAIVDEISGLTLLEVADLTEVLREKLDVKDMPVMAVMMPGMGFGGLQGAAAKGG 120
           AP+ERV+AIVDEISGLTLLEVADLTEVLREKLDVKDMPVMAVMMPGMGFGGLQ  A KGG
Sbjct: 61  APSERVTAIVDEISGLTLLEVADLTEVLREKLDVKDMPVMAVMMPGMGFGGLQN-AGKGG 120

Query: 121 AGAKGGGEEKKAEKTAFDVKLEGFDAASKIKVIKEVRTFTNLGLKEAKDLVEKAPTLLKK 180
           +GAK GGEEKKAEKTAFDVKLE FDAASKIKVIKEVRTFTNLGLKEAKDLVEKAPTLLKK
Sbjct: 121 SGAK-GGEEKKAEKTAFDVKLEAFDAASKIKVIKEVRTFTNLGLKEAKDLVEKAPTLLKK 180

Query: 181 GVTKEEADTIIAKMKDVGAKVSME 199
           GVTKEEADTIIAKMK+VGAKVSME
Sbjct: 181 GVTKEEADTIIAKMKEVGAKVSME 202

[Close]

BLAST of Sed0013751 vs. NCBI nr
Match: XP_022132430.1 (uncharacterized protein LOC111005287 [Momordica charantia])

HSP 1 Score: 298.5 bits (763), Expect = 4.2e-77
Identity = 178/204 (87.25%), Postives = 180/204 (88.24%), Query Frame = 0


Query: 1   MRNLRILSLHLSRIRRT--QNPCSDSPS----NLLGSERLTSSSLLNRRNYTTASPEPRP 60
           MR LRILS H SRI RT  Q PC DS S    NLLG   L SSSLLN RNYTTASPE RP
Sbjct: 1   MRYLRILSPHFSRICRTFAQTPCCDSSSTHSLNLLGLGSLASSSLLNHRNYTTASPESRP 60

Query: 61  APTERVSAIVDEISGLTLLEVADLTEVLREKLDVKDMPVMAVMMPGMGFGGLQGAAAKGG 120
           AP+ERVSAIVDEISGLTLLEVADLTEVLREKLDVKDMPVMAVMMPGMGFGGLQG A KGG
Sbjct: 61  APSERVSAIVDEISGLTLLEVADLTEVLREKLDVKDMPVMAVMMPGMGFGGLQG-AGKGG 120

Query: 121 AGAKGGGEEKKAEKTAFDVKLEGFDAASKIKVIKEVRTFTNLGLKEAKDLVEKAPTLLKK 180
            GAK GGEEKKAEKTAFDVKLE FDAASKIKVIKEVRTFTNLGLKEAKDLVEKAPTLLKK
Sbjct: 121 PGAK-GGEEKKAEKTAFDVKLEAFDAASKIKVIKEVRTFTNLGLKEAKDLVEKAPTLLKK 180

Query: 181 GVTKEEADTIIAKMKDVGAKVSME 199
           GVTKEEADTIIAKMK+VGAKVSME
Sbjct: 181 GVTKEEADTIIAKMKEVGAKVSME 202

[Close]

BLAST of Sed0013751 vs. NCBI nr
Match: XP_038881033.1 (50S ribosomal protein L7/L12 [Benincasa hispida])

HSP 1 Score: 297.0 bits (759), Expect = 1.2e-76
Identity = 173/204 (84.80%), Postives = 181/204 (88.73%), Query Frame = 0


Query: 1   MRNLRILSLHLSRIRRT--QNPCSDSPS----NLLGSERLTSSSLLNRRNYTTASPEPRP 60
           MR LR  S H SRIRRT  QNPCSDSPS    +LLG E   SSS LN RN+TTASPE RP
Sbjct: 1   MRYLRTFSTHFSRIRRTFAQNPCSDSPSTLNFDLLGLESYASSSSLNHRNFTTASPESRP 60

Query: 61  APTERVSAIVDEISGLTLLEVADLTEVLREKLDVKDMPVMAVMMPGMGFGGLQGAAAKGG 120
           AP+E+VSAIVDEISGLTLLEVADLTEVLR+KLDVK+MPVMAVMMPGMGFGGLQG A KGG
Sbjct: 61  APSEKVSAIVDEISGLTLLEVADLTEVLRQKLDVKEMPVMAVMMPGMGFGGLQG-AGKGG 120

Query: 121 AGAKGGGEEKKAEKTAFDVKLEGFDAASKIKVIKEVRTFTNLGLKEAKDLVEKAPTLLKK 180
            GAK GGEEKKAEKTAFDVKLE FDAASKIK+IKEVRTFTNLGLKEAKDLVEKAPTLLKK
Sbjct: 121 PGAK-GGEEKKAEKTAFDVKLEAFDAASKIKIIKEVRTFTNLGLKEAKDLVEKAPTLLKK 180

Query: 181 GVTKEEADTIIAKMKDVGAKVSME 199
           GVTKEEADTIIAKMK+VGAKVSME
Sbjct: 181 GVTKEEADTIIAKMKEVGAKVSME 202

[Close]

BLAST of Sed0013751 vs. ExPASy Swiss-Prot
Match: Q9USJ9 (54S ribosomal protein L12, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=mrpl12 PE=3 SV=2)

HSP 1 Score: 96.7 bits (239), Expect = 3.2e-19
Identity = 64/170 (37.65%), Postives = 101/170 (59.41%), Query Frame = 0


Query: 29  LGSERLTSSSLLNRRNYTTASPEPRPAPTERVSAIVDEISGLTLLEVADLTEVLREKLDV 88
           L S +  + SL+N R++  A+         ++  +VD+IS L+LLE ++L + L+EKL++
Sbjct: 15  LSSSKNWARSLVNTRSFRAAASVQN--NNAQIGEMVDKISSLSLLETSELVKQLKEKLNI 74

Query: 89  KDMPVMAVMMPGMGFGGLQGAAAKGGAGAKGGGEEKKAEKTAFDVKLEGFDAASKIKVIK 148
            ++  MA + P         A A      +   EEKK EKT +++KLE FDA SK KVIK
Sbjct: 75  AEIAPMAAVAP---------AVASAAPSEEKAPEEKKEEKTTWNLKLESFDAGSKAKVIK 134

Query: 149 EVRTFTNLGLKEAKDLVEKAPTLLKKGVTKEEADTIIAKMKDVGAKVSME 199
           EV++   L L +AK  VE AP +LK+ + KE+A+ I +K++ +  KV +E
Sbjct: 135 EVKSLLGLSLVDAKKFVESAPKVLKENILKEDAEAIKSKLEKLSCKVVLE 173

[Close]

BLAST of Sed0013751 vs. ExPASy Swiss-Prot
Match: A6LKB9 (50S ribosomal protein L7/L12 OS=Thermosipho melanesiensis (strain DSM 12029 / CIP 104789 / BI429) OX=391009 GN=rplL PE=3 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.0e-17
Identity = 69/145 (47.59%), Postives = 92/145 (63.45%), Query Frame = 0


Query: 58  ERVSAIVDEISGLTLLEVADLTEVLREKLDVK-DMPVMAVMMPGMGFGGLQGAAAKGGAG 117
           E++  IV+EI  LT+ E+A+L ++L +K  V    PVMA  MP      + GAAA GGA 
Sbjct: 2   EKLEQIVNEIEQLTVAELAELVKMLEDKFGVSASAPVMA--MP------VAGAAAGGGAA 61

Query: 118 AKGGGEEKKAEKTAFDVKLEGFDAASKIKVIKEVRTFTNLGLKEAKDLVEKAPT---LLK 177
           A+        EKT FDV L+ F  A KI VIK VR  T LGLKEAKDLVEKA T   ++K
Sbjct: 62  AE--------EKTEFDVVLKSF-GAKKINVIKVVREITGLGLKEAKDLVEKAGTPDAVIK 121

Query: 178 KGVTKEEADTIIAKMKDVGAKVSME 199
           +GV K+EA+ I  K+++ GA+V ++
Sbjct: 122 QGVNKDEAEEIKKKLEEAGAEVELK 129

[Close]

BLAST of Sed0013751 vs. ExPASy Swiss-Prot
Match: P41189 (50S ribosomal protein L7/L12 OS=Liberibacter africanus OX=34020 GN=rplL PE=3 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.8e-17
Identity = 60/136 (44.12%), Postives = 80/136 (58.82%), Query Frame = 0


Query: 60  VSAIVDEISGLTLLEVADLTEVLREKLDVKDMPVMAVMMPGMGFGGLQGAAAKGGAGAKG 119
           + +IV+++S LTLL+ A+L++ L E+  V     +AV+                 A A G
Sbjct: 4   IESIVEKLSSLTLLQAAELSKRLEEEWGVSAAAPVAVV-----------------ASAAG 63

Query: 120 GGEEKKAEKTAFDVKLEGFDAASKIKVIKEVRTFTNLGLKEAKDLVEKAPTLLKKGVTKE 179
                 AEKT F+V LEGFDA  KI VIKEVR  T LGLKEAKD VE AP  LK GV+K+
Sbjct: 64  ESAAAVAEKTEFEVFLEGFDAKKKISVIKEVRAITELGLKEAKDFVESAPKSLKTGVSKD 122

Query: 180 EADTIIAKMKDVGAKV 196
           EA+ +  K++  GA +
Sbjct: 124 EAEELKKKLEAAGATI 122

[Close]

BLAST of Sed0013751 vs. ExPASy Swiss-Prot
Match: B0CAD2 (50S ribosomal protein L7/L12 OS=Acaryochloris marina (strain MBIC 11017) OX=329726 GN=rplL PE=3 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 3.0e-17
Identity = 59/136 (43.38%), Postives = 79/136 (58.09%), Query Frame = 0


Query: 63  IVDEISGLTLLEVADLTEVLREKLDVKDMPVMAVMMPGMGFGGLQGAAAKGGAGAKGGGE 122
           I++++  LTLLE ADL + + E   V   P   VMM           AA G  GA GG  
Sbjct: 7   ILEKLKSLTLLEAADLVKQIEETFGVSAAPAAGVMM-----------AAPGAGGAAGG-- 66

Query: 123 EKKAEKTAFDVKLEGFDAASKIKVIKEVRTFTNLGLKEAKDLVEKAPTLLKKGVTKEEAD 182
           E+  EKT FDV LE   +  KI V+K VRT T LGLKEAK++VE  P  +K+GV+KE+A+
Sbjct: 67  EEAEEKTEFDVVLEEVPSDKKIAVLKVVRTLTGLGLKEAKEMVESTPKSIKEGVSKEDAE 126

Query: 183 TIIAKMKDVGAKVSME 199
                ++D G K S++
Sbjct: 127 EAKKSLEDAGGKASLK 129

[Close]

BLAST of Sed0013751 vs. ExPASy Swiss-Prot
Match: A9BDG4 (50S ribosomal protein L7/L12 OS=Prochlorococcus marinus (strain MIT 9211) OX=93059 GN=rplL PE=3 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 3.0e-17
Identity = 59/142 (41.55%), Postives = 85/142 (59.86%), Query Frame = 0


Query: 57  TERVSAIVDEISGLTLLEVADLTEVLREKLDVKDMPVMAVMMPGMGFGGLQGAAAKGGAG 116
           +++   I+D +  L+LLE ++L + + E   V       V+M   G GG  GA+A G   
Sbjct: 2   SKKTDEILDSLKSLSLLEASELVKQIEEAFGVSAAASAGVVMAAPGAGG--GASAAG--- 61

Query: 117 AKGGGEEKKAEKTAFDVKLEGFDAASKIKVIKEVRTFTNLGLKEAKDLVEKAPTLLKKGV 176
                 E   EKT FDV LE FDAA+KIKV+KEVR  T LGL EAK +VE AP  +K+G 
Sbjct: 62  ------EAAEEKTEFDVILESFDAAAKIKVLKEVRNATGLGLGEAKAMVEAAPKTIKEGA 121

Query: 177 TKEEADTIIAKMKDVGAKVSME 199
           +KE+A+ +   ++ VG KV+++
Sbjct: 122 SKEDAEALKKAIEAVGGKVTLK 132

[Close]

BLAST of Sed0013751 vs. ExPASy TrEMBL
Match: A0A6J1KN90 (uncharacterized protein LOC111497194 OS=Cucurbita maxima OX=3661 GN=LOC111497194 PE=3 SV=1)

HSP 1 Score: 301.2 bits (770), Expect = 3.2e-78
Identity = 176/204 (86.27%), Postives = 184/204 (90.20%), Query Frame = 0


Query: 1   MRNLRILSLHLSRIRRT--QNPCSDSPS----NLLGSERLTSSSLLNRRNYTTASPEPRP 60
           MR+LR +S HLSR+RRT  QN  SDSPS    NLLG ERLTSSSLLN RNYT ASPE +P
Sbjct: 1   MRHLRSISSHLSRVRRTFAQNSASDSPSTCNLNLLGLERLTSSSLLNHRNYTIASPESKP 60

Query: 61  APTERVSAIVDEISGLTLLEVADLTEVLREKLDVKDMPVMAVMMPGMGFGGLQGAAAKGG 120
           AP+ERV+AIVDEISGLTLLEVADLTEVLREKLDVKDMPVMAVMMPGMGFGGLQ    KGG
Sbjct: 61  APSERVTAIVDEISGLTLLEVADLTEVLREKLDVKDMPVMAVMMPGMGFGGLQN-TGKGG 120

Query: 121 AGAKGGGEEKKAEKTAFDVKLEGFDAASKIKVIKEVRTFTNLGLKEAKDLVEKAPTLLKK 180
           +GAK GGEEKKAEKTAFDVKLE FDAASKIKVIKEVRTFTNLGLKEAKDLVEKAPTLLKK
Sbjct: 121 SGAK-GGEEKKAEKTAFDVKLEAFDAASKIKVIKEVRTFTNLGLKEAKDLVEKAPTLLKK 180

Query: 181 GVTKEEADTIIAKMKDVGAKVSME 199
           GVTKEEADTIIAKMK+VGAKVSME
Sbjct: 181 GVTKEEADTIIAKMKEVGAKVSME 202

[Close]

BLAST of Sed0013751 vs. ExPASy TrEMBL
Match: A0A6J1BSG1 (uncharacterized protein LOC111005287 OS=Momordica charantia OX=3673 GN=LOC111005287 PE=3 SV=1)

HSP 1 Score: 298.5 bits (763), Expect = 2.0e-77
Identity = 178/204 (87.25%), Postives = 180/204 (88.24%), Query Frame = 0


Query: 1   MRNLRILSLHLSRIRRT--QNPCSDSPS----NLLGSERLTSSSLLNRRNYTTASPEPRP 60
           MR LRILS H SRI RT  Q PC DS S    NLLG   L SSSLLN RNYTTASPE RP
Sbjct: 1   MRYLRILSPHFSRICRTFAQTPCCDSSSTHSLNLLGLGSLASSSLLNHRNYTTASPESRP 60

Query: 61  APTERVSAIVDEISGLTLLEVADLTEVLREKLDVKDMPVMAVMMPGMGFGGLQGAAAKGG 120
           AP+ERVSAIVDEISGLTLLEVADLTEVLREKLDVKDMPVMAVMMPGMGFGGLQG A KGG
Sbjct: 61  APSERVSAIVDEISGLTLLEVADLTEVLREKLDVKDMPVMAVMMPGMGFGGLQG-AGKGG 120

Query: 121 AGAKGGGEEKKAEKTAFDVKLEGFDAASKIKVIKEVRTFTNLGLKEAKDLVEKAPTLLKK 180
            GAK GGEEKKAEKTAFDVKLE FDAASKIKVIKEVRTFTNLGLKEAKDLVEKAPTLLKK
Sbjct: 121 PGAK-GGEEKKAEKTAFDVKLEAFDAASKIKVIKEVRTFTNLGLKEAKDLVEKAPTLLKK 180

Query: 181 GVTKEEADTIIAKMKDVGAKVSME 199
           GVTKEEADTIIAKMK+VGAKVSME
Sbjct: 181 GVTKEEADTIIAKMKEVGAKVSME 202

[Close]

BLAST of Sed0013751 vs. ExPASy TrEMBL
Match: A0A6J1HHF7 (uncharacterized protein LOC111463515 OS=Cucurbita moschata OX=3662 GN=LOC111463515 PE=3 SV=1)

HSP 1 Score: 293.5 bits (750), Expect = 6.6e-76
Identity = 173/204 (84.80%), Postives = 181/204 (88.73%), Query Frame = 0


Query: 1   MRNLRILSLHLSRIRRT--QNPCSDSPS----NLLGSERLTSSSLLNRRNYTTASPEPRP 60
           MR+LR +S HLS +RRT   N  SDSPS    NLLG ERLTS SLLN RNYT ASPE +P
Sbjct: 1   MRHLRSISSHLSWVRRTFAHNSASDSPSTCNLNLLGLERLTSFSLLNHRNYTVASPESKP 60

Query: 61  APTERVSAIVDEISGLTLLEVADLTEVLREKLDVKDMPVMAVMMPGMGFGGLQGAAAKGG 120
           AP+ERV+AIVDEISGLTLLEVADLTEVLREKLDVKDMPVMAVMMPGMGFGGLQ  A KGG
Sbjct: 61  APSERVTAIVDEISGLTLLEVADLTEVLREKLDVKDMPVMAVMMPGMGFGGLQN-AGKGG 120

Query: 121 AGAKGGGEEKKAEKTAFDVKLEGFDAASKIKVIKEVRTFTNLGLKEAKDLVEKAPTLLKK 180
           +GAK GGEEKKAEKTAFDVKLE FDAASKIKVIKEVR FTNLGLKEAKDLVEKAPTLLKK
Sbjct: 121 SGAK-GGEEKKAEKTAFDVKLEAFDAASKIKVIKEVRMFTNLGLKEAKDLVEKAPTLLKK 180

Query: 181 GVTKEEADTIIAKMKDVGAKVSME 199
           GVTKEEADTIIAKMK+VGAKVSME
Sbjct: 181 GVTKEEADTIIAKMKEVGAKVSME 202

[Close]

BLAST of Sed0013751 vs. ExPASy TrEMBL
Match: A0A5A7SN88 (50S ribosomal protein L7/L12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G001680 PE=3 SV=1)

HSP 1 Score: 284.3 bits (726), Expect = 4.0e-73
Identity = 167/204 (81.86%), Postives = 176/204 (86.27%), Query Frame = 0


Query: 1   MRNLRILSLHLSRIRRT--QNPCSDSPS----NLLGSERLTSSSLLNRRNYTTASPEPRP 60
           MRNLR  S H SRIRRT  QNP S SPS    NL G E   SSS +N RNYTTASPE RP
Sbjct: 1   MRNLRFFSSHFSRIRRTFAQNPSSVSPSTRHINLPGLETFASSSSVNHRNYTTASPESRP 60

Query: 61  APTERVSAIVDEISGLTLLEVADLTEVLREKLDVKDMPVMAVMMPGMGFGGLQGAAAKGG 120
           AP+ERVSAIVDEISGLTLLEVADLTEVLREKLDVK+MPVM +MMPG GFGG+QG A KGG
Sbjct: 61  APSERVSAIVDEISGLTLLEVADLTEVLREKLDVKEMPVMTIMMPGTGFGGVQG-AGKGG 120

Query: 121 AGAKGGGEEKKAEKTAFDVKLEGFDAASKIKVIKEVRTFTNLGLKEAKDLVEKAPTLLKK 180
            GAK GGEEKK EKTAFDVKLE FDAASKIK+IKEVRTFT+LGLKEAKDLVEKAPTLLKK
Sbjct: 121 PGAK-GGEEKKEEKTAFDVKLEAFDAASKIKIIKEVRTFTSLGLKEAKDLVEKAPTLLKK 180

Query: 181 GVTKEEADTIIAKMKDVGAKVSME 199
           GVTKEEA+TIIAKMK+VGAKVSME
Sbjct: 181 GVTKEEAETIIAKMKEVGAKVSME 202

[Close]

BLAST of Sed0013751 vs. ExPASy TrEMBL
Match: A0A1S3B1Y6 (50S ribosomal protein L7/L12 OS=Cucumis melo OX=3656 GN=LOC103485090 PE=3 SV=1)

HSP 1 Score: 284.3 bits (726), Expect = 4.0e-73
Identity = 167/204 (81.86%), Postives = 176/204 (86.27%), Query Frame = 0


Query: 1   MRNLRILSLHLSRIRRT--QNPCSDSPS----NLLGSERLTSSSLLNRRNYTTASPEPRP 60
           MRNLR  S H SRIRRT  QNP S SPS    NL G E   SSS +N RNYTTASPE RP
Sbjct: 1   MRNLRFFSSHFSRIRRTFAQNPSSVSPSTRHINLPGLETFASSSSVNHRNYTTASPESRP 60

Query: 61  APTERVSAIVDEISGLTLLEVADLTEVLREKLDVKDMPVMAVMMPGMGFGGLQGAAAKGG 120
           AP+ERVSAIVDEISGLTLLEVADLTEVLREKLDVK+MPVM +MMPG GFGG+QG A KGG
Sbjct: 61  APSERVSAIVDEISGLTLLEVADLTEVLREKLDVKEMPVMTIMMPGTGFGGVQG-AGKGG 120

Query: 121 AGAKGGGEEKKAEKTAFDVKLEGFDAASKIKVIKEVRTFTNLGLKEAKDLVEKAPTLLKK 180
            GAK GGEEKK EKTAFDVKLE FDAASKIK+IKEVRTFT+LGLKEAKDLVEKAPTLLKK
Sbjct: 121 PGAK-GGEEKKEEKTAFDVKLEAFDAASKIKIIKEVRTFTSLGLKEAKDLVEKAPTLLKK 180

Query: 181 GVTKEEADTIIAKMKDVGAKVSME 199
           GVTKEEA+TIIAKMK+VGAKVSME
Sbjct: 181 GVTKEEAETIIAKMKEVGAKVSME 202

[Close]

BLAST of Sed0013751 vs. TAIR 10
Match: AT4G36420.1 (Ribosomal protein L12 family protein )

HSP 1 Score: 171.0 bits (432), Expect = 9.5e-43
Identity = 110/198 (55.56%), Postives = 138/198 (69.70%), Query Frame = 0


Query: 1   MRNLRILSLHLSRIRRTQNPCSDSPSNLLGSERLTSSSLLNRRNYTTASPEPRPAPTERV 60
           MRNLRI+S H SR+ ++               R +S  L   ++ + +SP  +   +E V
Sbjct: 1   MRNLRIISSHFSRVLKST------------ETRSSSVQLFTIQSRSYSSPATQ---SENV 60

Query: 61  SAIVDEISGLTLLEVADLTEVLREKLDVKDMPVMAVMMPGMGFGGLQGAAAKGGAGAKGG 120
           S IV+E+S LTLLE  DLTE+LR+KL++ ++PVMA MMPGM    L G+ A   AG + G
Sbjct: 61  SKIVNELSNLTLLETMDLTEILRQKLNISELPVMAAMMPGM---SLPGSGASKSAGGE-G 120

Query: 121 GEEKKAEKTAFDVKLEGFDAASKIKVIKEVRTFTNLGLKEAKDLVEKAPTLLKKGVTKEE 180
            E+KK  KTAFDV L+ +DA SKIKVIKEVRT T LGLKEAKDLVEKAPTLLKKGV+KEE
Sbjct: 121 KEKKKEAKTAFDVMLQAYDAVSKIKVIKEVRTITALGLKEAKDLVEKAPTLLKKGVSKEE 179

Query: 181 ADTIIAKMKDVGAKVSME 199
           A+ II K+K VGAKV+ME
Sbjct: 181 AEKIIEKLKAVGAKVAME 179

[Close]

BLAST of Sed0013751 vs. TAIR 10
Match: AT1G70190.1 (Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like )

HSP 1 Score: 135.2 bits (339), Expect = 5.8e-32
Identity = 76/148 (51.35%), Postives = 106/148 (71.62%), Query Frame = 0


Query: 51  EPRPAPTERVSAIVDEISGLTLLEVADLTEVLREKLDVKDMPVMAVMMPGMGFGGLQGAA 110
           E R  PT+RV  +VDEIS LTLLE+++L  ++ +K  + ++P +AVM PG G GG+    
Sbjct: 62  EHRSPPTDRVFRLVDEISSLTLLEISELGSIIMKKKGMTELPTVAVMKPGAG-GGVGVGG 121

Query: 111 AKGGAGAKGGGEEKKAEKTAFDVKLEGFDAASKIKVIKEVRTFTNLGLKEAKDLVEKAPT 170
             G     G  EE K EKT F++KLE F+A++KIK+IKE+R+FT+LGLKEAK LVEK P 
Sbjct: 122 GGGMVSQSGVSEEAKVEKTVFEIKLESFEASAKIKIIKELRSFTDLGLKEAKALVEKTPA 181

Query: 171 LLKKGVTKEEADTIIAKMKDVGAKVSME 199
           +LK G++KEE + I+ K+K +GAKV +E
Sbjct: 182 ILKAGLSKEEGEKILEKLKALGAKVVLE 208

[Close]

BLAST of Sed0013751 vs. TAIR 10
Match: AT1G70190.2 (Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like )

HSP 1 Score: 135.2 bits (339), Expect = 5.8e-32
Identity = 76/148 (51.35%), Postives = 106/148 (71.62%), Query Frame = 0


Query: 51  EPRPAPTERVSAIVDEISGLTLLEVADLTEVLREKLDVKDMPVMAVMMPGMGFGGLQGAA 110
           E R  PT+RV  +VDEIS LTLLE+++L  ++ +K  + ++P +AVM PG G GG+    
Sbjct: 62  EHRSPPTDRVFRLVDEISSLTLLEISELGSIIMKKKGMTELPTVAVMKPGAG-GGVGVGG 121

Query: 111 AKGGAGAKGGGEEKKAEKTAFDVKLEGFDAASKIKVIKEVRTFTNLGLKEAKDLVEKAPT 170
             G     G  EE K EKT F++KLE F+A++KIK+IKE+R+FT+LGLKEAK LVEK P 
Sbjct: 122 GGGMVSQSGVSEEAKVEKTVFEIKLESFEASAKIKIIKELRSFTDLGLKEAKALVEKTPA 181

Query: 171 LLKKGVTKEEADTIIAKMKDVGAKVSME 199
           +LK G++KEE + I+ K+K +GAKV +E
Sbjct: 182 ILKAGLSKEEGEKILEKLKALGAKVVLE 208

[Close]

BLAST of Sed0013751 vs. TAIR 10
Match: AT3G06040.1 (Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein )

HSP 1 Score: 109.4 bits (272), Expect = 3.4e-24
Identity = 73/147 (49.66%), Postives = 91/147 (61.90%), Query Frame = 0


Query: 52  PRPAPTERVSAIVDEISGLTLLEVADLTEVLREKLDVKDMPVMAVMMPGMGFGGLQGAAA 111
           PRP P+ ++  + + I+ L+  E   +   L E L           +P        G  A
Sbjct: 52  PRPQPSSKIMELAERIAALSPEERKQIGPALNEHL----------RLPKQQMISSDGIGA 111

Query: 112 KGGAGAKGGGEEKKAEKTAFDVKLEGFDAASKIKVIKEVRTFTNLGLKEAKDLVEKAPTL 171
           K   GA  G  E+K EKTAFDVKLE F+A+ KIKVIKEVRTFT+LGLKEAK+LVEK P +
Sbjct: 112 KQDTGA--GNVEEKKEKTAFDVKLEKFNASDKIKVIKEVRTFTSLGLKEAKELVEKVPAI 171

Query: 172 LKKGVTKEEADTIIAKMKDVGAKVSME 199
           LK+GVTKEEA+ IIAK+K VG    ME
Sbjct: 172 LKQGVTKEEANEIIAKIKAVGGIAVME 186

[Close]

BLAST of Sed0013751 vs. TAIR 10
Match: AT3G06040.2 (Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein )

HSP 1 Score: 109.4 bits (272), Expect = 3.4e-24
Identity = 73/147 (49.66%), Postives = 91/147 (61.90%), Query Frame = 0


Query: 52  PRPAPTERVSAIVDEISGLTLLEVADLTEVLREKLDVKDMPVMAVMMPGMGFGGLQGAAA 111
           PRP P+ ++  + + I+ L+  E   +   L E L           +P        G  A
Sbjct: 52  PRPQPSSKIMELAERIAALSPEERKQIGPALNEHL----------RLPKQQMISSDGIGA 111

Query: 112 KGGAGAKGGGEEKKAEKTAFDVKLEGFDAASKIKVIKEVRTFTNLGLKEAKDLVEKAPTL 171
           K   GA  G  E+K EKTAFDVKLE F+A+ KIKVIKEVRTFT+LGLKEAK+LVEK P +
Sbjct: 112 KQDTGA--GNVEEKKEKTAFDVKLEKFNASDKIKVIKEVRTFTSLGLKEAKELVEKVPAI 171

Query: 172 LKKGVTKEEADTIIAKMKDVGAKVSME 199
           LK+GVTKEEA+ IIAK+K VG    ME
Sbjct: 172 LKQGVTKEEANEIIAKIKAVGGIAVME 186

The following BLAST results are available for this feature:

BLAST of Sed0013751 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6594805.1	6.5e-78	86.27	hypothetical protein SDJN03_11358, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023003672.1	6.5e-78	86.27	uncharacterized protein LOC111497194 [Cucurbita maxima]	[more]
XP_023518906.1	8.5e-78	86.27	uncharacterized protein LOC111782287 [Cucurbita pepo subsp. pepo]	[more]
XP_022132430.1	4.2e-77	87.25	uncharacterized protein LOC111005287 [Momordica charantia]	[more]
XP_038881033.1	1.2e-76	84.80	50S ribosomal protein L7/L12 [Benincasa hispida]	[more]

BLAST of Sed0013751 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9USJ9	3.2e-19	37.65	54S ribosomal protein L12, mitochondrial OS=Schizosaccharomyces pombe (strain 97...	[more]
A6LKB9	1.0e-17	47.59	50S ribosomal protein L7/L12 OS=Thermosipho melanesiensis (strain DSM 12029 / CI...	[more]
P41189	1.8e-17	44.12	50S ribosomal protein L7/L12 OS=Liberibacter africanus OX=34020 GN=rplL PE=3 SV=...	[more]
B0CAD2	3.0e-17	43.38	50S ribosomal protein L7/L12 OS=Acaryochloris marina (strain MBIC 11017) OX=3297...	[more]
A9BDG4	3.0e-17	41.55	50S ribosomal protein L7/L12 OS=Prochlorococcus marinus (strain MIT 9211) OX=930...	[more]

BLAST of Sed0013751 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KN90	3.2e-78	86.27	uncharacterized protein LOC111497194 OS=Cucurbita maxima OX=3661 GN=LOC111497194...	[more]
A0A6J1BSG1	2.0e-77	87.25	uncharacterized protein LOC111005287 OS=Momordica charantia OX=3673 GN=LOC111005...	[more]
A0A6J1HHF7	6.6e-76	84.80	uncharacterized protein LOC111463515 OS=Cucurbita moschata OX=3662 GN=LOC1114635...	[more]
A0A5A7SN88	4.0e-73	81.86	50S ribosomal protein L7/L12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A1S3B1Y6	4.0e-73	81.86	50S ribosomal protein L7/L12 OS=Cucumis melo OX=3656 GN=LOC103485090 PE=3 SV=1	[more]

BLAST of Sed0013751 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G36420.1	9.5e-43	55.56	Ribosomal protein L12 family protein	[more]
AT1G70190.1	5.8e-32	51.35	Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/a...	[more]
AT1G70190.2	5.8e-32	51.35	Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/a...	[more]
AT3G06040.1	3.4e-24	49.66	Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family pr...	[more]
AT3G06040.2	3.4e-24	49.66	Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family pr...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013823	Ribosomal protein L7/L12, C-terminal	PFAM	PF00542	Ribosomal_L12	coord: 131..197 e-value: 2.7E-24 score: 85.3
IPR014719	Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like	GENE3D	3.30.1390.10		coord: 128..197 e-value: 3.2E-24 score: 86.8
IPR014719	Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like	SUPERFAMILY	54736	ClpS-like	coord: 127..197
IPR008932	Ribosomal protein L7/L12, oligomerisation	PFAM	PF16320	Ribosomal_L12_N	coord: 60..111 e-value: 1.6E-10 score: 40.5
IPR000206	Ribosomal protein L7/L12	TIGRFAM	TIGR00855	TIGR00855	coord: 61..197 e-value: 2.1E-25 score: 87.6
IPR000206	Ribosomal protein L7/L12	PANTHER	PTHR45987	39S RIBOSOMAL PROTEIN L12	coord: 37..198
IPR000206	Ribosomal protein L7/L12	HAMAP	MF_00368	Ribosomal_L7_L12	coord: 57..198 score: 18.80459
IPR000206	Ribosomal protein L7/L12	CDD	cd00387	Ribosomal_L7_L12	coord: 58..197 e-value: 3.3313E-47 score: 149.228
IPR036235	Ribosomal protein L7/L12, oligomerisation domain superfamily	GENE3D	1.20.5.710	Single helix bin	coord: 59..127 e-value: 1.6E-6 score: 30.0
IPR036235	Ribosomal protein L7/L12, oligomerisation domain superfamily	SUPERFAMILY	48300	Ribosomal protein L7/12, oligomerisation (N-terminal) domain	coord: 60..133
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 17..57
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 17..51

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0013751.1	Sed0013751.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome