Sed0013703 (gene) Chayote v1

Overview


Name	Sed0013703
Type	gene
Organism	Sechium edule (Chayote v1)
Description	SNF1-related protein kinase regulatory subunit beta-3
Location	LG05: 39417556 .. 39417984 (-)
RNA-Seq Expression	Sed0013703
Synteny	Sed0013703

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACAACCCTTGCTCTGAAGATAGCGTAAGCTGCTAAAACTAGGTGTTTTCATCAACTAATAACATGAAATGGGGATTTAAAGATGTGCCCTTTCTACAGGATCAGACCACCGTAGTGGGTTTTGAAGTTCCAAAGTCACCGGATTCATCCTACAACAATGTATACCTTGGGAGCGAAGACGAGGCACGCGATCCACCACTTGTCCCACCTCATTTGCAGCACACCTTACTCGGCCACCCTGCAAGCAGAGATGCTGGTGAAACTCTTCCATTGCCACAGAATGCGATTCTCAACCATCTCTTTATCGAAAACCGGGAGACTCCACGATCCGTTGTGGCTCTTGGATTCACACATCGTTTTCATTCGAAATATGTCACAGTCGTGCTTTACAAACCGGTTCATAGAAGAGGGAGTAGCAGGGCTTAG

mRNA sequence

ATGAACAACCCTTGCTCTGAAGATAGCGATCAGACCACCGTAGTGGGTTTTGAAGTTCCAAAGTCACCGGATTCATCCTACAACAATGTATACCTTGGGAGCGAAGACGAGGCACGCGATCCACCACTTGTCCCACCTCATTTGCAGCACACCTTACTCGGCCACCCTGCAAGCAGAGATGCTGGTGAAACTCTTCCATTGCCACAGAATGCGATTCTCAACCATCTCTTTATCGAAAACCGGGAGACTCCACGATCCGTTGTGGCTCTTGGATTCACACATCGTTTTCATTCGAAATATGTCACAGTCGTGCTTTACAAACCGGTTCATAGAAGAGGGAGTAGCAGGGCTTAG

Coding sequence (CDS)

ATGAACAACCCTTGCTCTGAAGATAGCGATCAGACCACCGTAGTGGGTTTTGAAGTTCCAAAGTCACCGGATTCATCCTACAACAATGTATACCTTGGGAGCGAAGACGAGGCACGCGATCCACCACTTGTCCCACCTCATTTGCAGCACACCTTACTCGGCCACCCTGCAAGCAGAGATGCTGGTGAAACTCTTCCATTGCCACAGAATGCGATTCTCAACCATCTCTTTATCGAAAACCGGGAGACTCCACGATCCGTTGTGGCTCTTGGATTCACACATCGTTTTCATTCGAAATATGTCACAGTCGTGCTTTACAAACCGGTTCATAGAAGAGGGAGTAGCAGGGCTTAG

Protein sequence

MNNPCSEDSDQTTVVGFEVPKSPDSSYNNVYLGSEDEARDPPLVPPHLQHTLLGHPASRDAGETLPLPQNAILNHLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPVHRRGSSRA

Homology

[Close]

BLAST of Sed0013703 vs. NCBI nr
Match: XP_038902942.1 (SNF1-related protein kinase regulatory subunit beta-3 [Benincasa hispida] >XP_038902943.1 SNF1-related protein kinase regulatory subunit beta-3 [Benincasa hispida])

HSP 1 Score: 229.6 bits (584), Expect = 1.4e-56
Identity = 110/117 (94.02%), Postives = 112/117 (95.73%), Query Frame = 0


Query: 1   MNNPCSEDSDQTTVVGFEVPKSPDSSYNNVYLGSEDEARDPPLVPPHLQHTLLGHPASRD 60
           MNN CSEDSDQ TVVGFEVPKSPDS+YNNVY+GSEDEARDPPLVPPHLQHTLL  PASRD
Sbjct: 1   MNNLCSEDSDQNTVVGFEVPKSPDSTYNNVYVGSEDEARDPPLVPPHLQHTLLSQPASRD 60

Query: 61  AGETLPLPQNAILNHLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPVHRRGSSRA 118
           AGETLPLPQN ILNHLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPVHRRGSSRA
Sbjct: 61  AGETLPLPQNVILNHLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPVHRRGSSRA 117

[Close]

BLAST of Sed0013703 vs. NCBI nr
Match: XP_004145755.1 (SNF1-related protein kinase regulatory subunit beta-3 [Cucumis sativus] >XP_008465360.1 PREDICTED: SNF1-related protein kinase regulatory subunit beta-3 [Cucumis melo] >XP_008465361.1 PREDICTED: SNF1-related protein kinase regulatory subunit beta-3 [Cucumis melo] >XP_011657018.1 SNF1-related protein kinase regulatory subunit beta-3 [Cucumis sativus] >XP_016903370.1 PREDICTED: SNF1-related protein kinase regulatory subunit beta-3 [Cucumis melo] >XP_031742408.1 SNF1-related protein kinase regulatory subunit beta-3 [Cucumis sativus] >KAA0035235.1 SNF1-related protein kinase regulatory subunit beta-3 isoform X2 [Cucumis melo var. makuwa] >KGN46863.1 hypothetical protein Csa_020718 [Cucumis sativus] >TYK22390.1 SNF1-related protein kinase regulatory subunit beta-3 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 226.9 bits (577), Expect = 9.2e-56
Identity = 109/117 (93.16%), Postives = 112/117 (95.73%), Query Frame = 0


Query: 1   MNNPCSEDSDQTTVVGFEVPKSPDSSYNNVYLGSEDEARDPPLVPPHLQHTLLGHPASRD 60
           MNN  SEDSDQTTVVGFEVPKSPDS+YNN+Y+GSEDEARDPPLVPPHLQHTLL  PASRD
Sbjct: 1   MNNLYSEDSDQTTVVGFEVPKSPDSTYNNIYVGSEDEARDPPLVPPHLQHTLLSQPASRD 60

Query: 61  AGETLPLPQNAILNHLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPVHRRGSSRA 118
           AGETLPLPQN ILNHLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPVHRRGSSRA
Sbjct: 61  AGETLPLPQNVILNHLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPVHRRGSSRA 117

[Close]

BLAST of Sed0013703 vs. NCBI nr
Match: XP_022958406.1 (SNF1-related protein kinase regulatory subunit beta-3-like [Cucurbita moschata] >XP_022958407.1 SNF1-related protein kinase regulatory subunit beta-3-like [Cucurbita moschata] >XP_022958408.1 SNF1-related protein kinase regulatory subunit beta-3-like [Cucurbita moschata] >KAG6606042.1 SNF1-related protein kinase regulatory subunit beta-3, partial [Cucurbita argyrosperma subsp. sororia] >KAG7035994.1 SNF1-related protein kinase regulatory subunit beta-3 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 223.0 bits (567), Expect = 1.3e-54
Identity = 106/115 (92.17%), Postives = 109/115 (94.78%), Query Frame = 0


Query: 1   MNNPCSEDSDQTTVVGFEVPKSPDSSYNNVYLGSEDEARDPPLVPPHLQHTLLGHPASRD 60
           MNNP  EDSDQTTVVGFEVPKSPDS+YNNVYLGSED+ARDPP VPPHLQHTLL HPASRD
Sbjct: 1   MNNPFPEDSDQTTVVGFEVPKSPDSTYNNVYLGSEDDARDPPPVPPHLQHTLLSHPASRD 60

Query: 61  AGETLPLPQNAILNHLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPVHRRGSS 116
           AG TLPLPQN +LNHLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPVHRRGSS
Sbjct: 61  AGGTLPLPQNVVLNHLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPVHRRGSS 115

[Close]

BLAST of Sed0013703 vs. NCBI nr
Match: XP_022996167.1 (SNF1-related protein kinase regulatory subunit beta-3-like [Cucurbita maxima] >XP_022996168.1 SNF1-related protein kinase regulatory subunit beta-3-like [Cucurbita maxima] >XP_022996169.1 SNF1-related protein kinase regulatory subunit beta-3-like [Cucurbita maxima])

HSP 1 Score: 221.5 bits (563), Expect = 3.9e-54
Identity = 105/115 (91.30%), Postives = 108/115 (93.91%), Query Frame = 0


Query: 1   MNNPCSEDSDQTTVVGFEVPKSPDSSYNNVYLGSEDEARDPPLVPPHLQHTLLGHPASRD 60
           MNNP  EDSDQTTVVGFEVPKSPDS+YNNVYLGSED+ARDPP VPPHLQHTLL HPA RD
Sbjct: 1   MNNPFPEDSDQTTVVGFEVPKSPDSTYNNVYLGSEDDARDPPPVPPHLQHTLLSHPAGRD 60

Query: 61  AGETLPLPQNAILNHLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPVHRRGSS 116
           AG TLPLPQN +LNHLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPVHRRGSS
Sbjct: 61  AGGTLPLPQNVVLNHLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPVHRRGSS 115

[Close]

BLAST of Sed0013703 vs. NCBI nr
Match: XP_022140750.1 (SNF1-related protein kinase regulatory subunit beta-3 [Momordica charantia] >XP_022140751.1 SNF1-related protein kinase regulatory subunit beta-3 [Momordica charantia])

HSP 1 Score: 218.8 bits (556), Expect = 2.5e-53
Identity = 104/117 (88.89%), Postives = 108/117 (92.31%), Query Frame = 0


Query: 1   MNNPCSEDSDQTTVVGFEVPKSPDSSYNNVYLGSEDEARDPPLVPPHLQHTLLGHPASRD 60
           MNNP SEDSDQTTVVGFEVP SPDS+YNN+YLGSEDEARDPP  PPHLQHTLL HPASRD
Sbjct: 1   MNNPYSEDSDQTTVVGFEVPNSPDSTYNNLYLGSEDEARDPPFAPPHLQHTLLSHPASRD 60

Query: 61  AGETLPLPQNAILNHLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPVHRRGSSRA 118
           AG TLPLP N ILNHL+IENRETPRSVVALGFTHRF SK+VTVVLYKPVHRRGSSRA
Sbjct: 61  AGGTLPLPHNVILNHLYIENRETPRSVVALGFTHRFRSKFVTVVLYKPVHRRGSSRA 117

[Close]

BLAST of Sed0013703 vs. ExPASy Swiss-Prot
Match: Q9ZUU8 (SNF1-related protein kinase regulatory subunit beta-3 OS=Arabidopsis thaliana OX=3702 GN=KINB3 PE=1 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 2.6e-37
Identity = 76/115 (66.09%), Postives = 90/115 (78.26%), Query Frame = 0


Query: 1   MNNPCSEDSDQTTVVGFEVPKSPDSSYNNVYLGSEDEARDPPLVPPHLQHTLLGHPASRD 60
           MN+   +D + TTVVGFEVP SP SSYNNVY  +EDE RDPP VPPHLQH+LLG+  S  
Sbjct: 1   MNSQNPDDHEDTTVVGFEVPVSPVSSYNNVYSSTEDETRDPPAVPPHLQHSLLGNQGSM- 60

Query: 61  AGETLPLPQNAILNHLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPVHRRGSS 116
             E    PQN +LNHL+IENR+ PRSVVALGF+HRF +K+VTVV+YKPV RRGS+
Sbjct: 61  --ELAYAPQNVVLNHLYIENRDAPRSVVALGFSHRFRTKFVTVVIYKPVQRRGSA 112

[Close]

BLAST of Sed0013703 vs. ExPASy Swiss-Prot
Match: Q9SCY5 (SNF1-related protein kinase regulatory subunit beta-2 OS=Arabidopsis thaliana OX=3702 GN=KINB2 PE=1 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 2.3e-25
Identity = 57/103 (55.34%), Postives = 78/103 (75.73%), Query Frame = 0


Query: 10  DQTTVVGFEVPKSPDSSYNNVYLGSEDEARDPPLVPPHLQHTLLGHPASR-DAGETLPLP 69
           D  ++ GFE P+SP++SY+N+ LG+ED +++PP+VPPHLQ TLL  PA+  D    LP P
Sbjct: 187 DIQSISGFEPPQSPENSYSNLLLGAEDYSKEPPVVPPHLQMTLLNLPAANPDIPSPLPRP 246

Query: 70  QNAILNHLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPVHR 112
           Q+ ILNHL+++  ++  SVVALG THRF +KYVTVVLYK + R
Sbjct: 247 QHVILNHLYMQKGKSGPSVVALGSTHRFLAKYVTVVLYKSLQR 289

[Close]

BLAST of Sed0013703 vs. ExPASy Swiss-Prot
Match: Q84VQ1 (SNF1-related protein kinase regulatory subunit beta-1 OS=Arabidopsis thaliana OX=3702 GN=KINB1 PE=1 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 7.7e-21
Identity = 51/99 (51.52%), Postives = 65/99 (65.66%), Query Frame = 0


Query: 13  TVVGFEVPKSPDSSYNNVYLGSEDEARDPPLVPPHLQHTLLGHPASRDAGETLPLPQNAI 72
           ++V FE P SPD SY      +ED A++P  VPP L  TLLG   + +       PQ+ +
Sbjct: 188 SIVEFEAPPSPDHSYGQTLPAAEDYAKEPLAVPPQLHLTLLG---TTEETAIATKPQHVV 247

Query: 73  LNHLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPVHR 112
           LNH+FIE   TP+S+VALG THRF SKY+TVVLYKP+ R
Sbjct: 248 LNHVFIEQGWTPQSIVALGLTHRFESKYITVVLYKPLTR 283

[Close]

BLAST of Sed0013703 vs. ExPASy Swiss-Prot
Match: Q9QZH4 (5'-AMP-activated protein kinase subunit beta-2 OS=Rattus norvegicus OX=10116 GN=Prkab2 PE=1 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 6.7e-09
Identity = 34/95 (35.79%), Postives = 49/95 (51.58%), Query Frame = 0


Query: 18  EVPKSPDSSYNN--VYLGSEDEARDPPLVPPHLQHTLLGHPASRDAGET-LPLPQNAILN 77
           ++  SP   Y        SE+  + PP++PPHL   +L    +       LP P + +LN
Sbjct: 179 DLSSSPPGPYGQEMYVFRSEERFKSPPILPPHLLQVILNKDTNISCDPALLPEPNHVMLN 238

Query: 78  HLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPV 110
           HL+     T  SV+ L  THR+  KYVT +LYKP+
Sbjct: 239 HLYA--LSTKDSVMVLSATHRYKKKYVTTLLYKPI 271

[Close]

BLAST of Sed0013703 vs. ExPASy Swiss-Prot
Match: O43741 (5'-AMP-activated protein kinase subunit beta-2 OS=Homo sapiens OX=9606 GN=PRKAB2 PE=1 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.6e-08
Identity = 33/95 (34.74%), Postives = 50/95 (52.63%), Query Frame = 0


Query: 18  EVPKSPDSSYNNVYLG--SEDEARDPPLVPPHLQHTLLGHPASRDAGET-LPLPQNAILN 77
           ++  SP   Y        SE+  + PP++PPHL   +L    +       LP P + +LN
Sbjct: 180 DLSSSPPGPYGQEMYAFRSEERFKSPPILPPHLLQVILNKDTNISCDPALLPEPNHVMLN 239

Query: 78  HLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPV 110
           HL+  + +   SV+ L  THR+  KYVT +LYKP+
Sbjct: 240 HLYALSIKD--SVMVLSATHRYKKKYVTTLLYKPI 272

[Close]

BLAST of Sed0013703 vs. ExPASy TrEMBL
Match: A0A1S3CP39 (SNF1-related protein kinase regulatory subunit beta-3 OS=Cucumis melo OX=3656 GN=LOC103502997 PE=3 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 4.5e-56
Identity = 109/117 (93.16%), Postives = 112/117 (95.73%), Query Frame = 0


Query: 1   MNNPCSEDSDQTTVVGFEVPKSPDSSYNNVYLGSEDEARDPPLVPPHLQHTLLGHPASRD 60
           MNN  SEDSDQTTVVGFEVPKSPDS+YNN+Y+GSEDEARDPPLVPPHLQHTLL  PASRD
Sbjct: 1   MNNLYSEDSDQTTVVGFEVPKSPDSTYNNIYVGSEDEARDPPLVPPHLQHTLLSQPASRD 60

Query: 61  AGETLPLPQNAILNHLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPVHRRGSSRA 118
           AGETLPLPQN ILNHLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPVHRRGSSRA
Sbjct: 61  AGETLPLPQNVILNHLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPVHRRGSSRA 117

[Close]

BLAST of Sed0013703 vs. ExPASy TrEMBL
Match: A0A5A7T1A3 (SNF1-related protein kinase regulatory subunit beta-3 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold173G00140 PE=3 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 4.5e-56
Identity = 109/117 (93.16%), Postives = 112/117 (95.73%), Query Frame = 0


Query: 1   MNNPCSEDSDQTTVVGFEVPKSPDSSYNNVYLGSEDEARDPPLVPPHLQHTLLGHPASRD 60
           MNN  SEDSDQTTVVGFEVPKSPDS+YNN+Y+GSEDEARDPPLVPPHLQHTLL  PASRD
Sbjct: 1   MNNLYSEDSDQTTVVGFEVPKSPDSTYNNIYVGSEDEARDPPLVPPHLQHTLLSQPASRD 60

Query: 61  AGETLPLPQNAILNHLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPVHRRGSSRA 118
           AGETLPLPQN ILNHLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPVHRRGSSRA
Sbjct: 61  AGETLPLPQNVILNHLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPVHRRGSSRA 117

[Close]

BLAST of Sed0013703 vs. ExPASy TrEMBL
Match: A0A0A0KBG3 (AMPKBI domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G147560 PE=3 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 4.5e-56
Identity = 109/117 (93.16%), Postives = 112/117 (95.73%), Query Frame = 0


Query: 1   MNNPCSEDSDQTTVVGFEVPKSPDSSYNNVYLGSEDEARDPPLVPPHLQHTLLGHPASRD 60
           MNN  SEDSDQTTVVGFEVPKSPDS+YNN+Y+GSEDEARDPPLVPPHLQHTLL  PASRD
Sbjct: 1   MNNLYSEDSDQTTVVGFEVPKSPDSTYNNIYVGSEDEARDPPLVPPHLQHTLLSQPASRD 60

Query: 61  AGETLPLPQNAILNHLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPVHRRGSSRA 118
           AGETLPLPQN ILNHLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPVHRRGSSRA
Sbjct: 61  AGETLPLPQNVILNHLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPVHRRGSSRA 117

[Close]

BLAST of Sed0013703 vs. ExPASy TrEMBL
Match: A0A6J1H1Z8 (SNF1-related protein kinase regulatory subunit beta-3-like OS=Cucurbita moschata OX=3662 GN=LOC111459640 PE=3 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 6.5e-55
Identity = 106/115 (92.17%), Postives = 109/115 (94.78%), Query Frame = 0


Query: 1   MNNPCSEDSDQTTVVGFEVPKSPDSSYNNVYLGSEDEARDPPLVPPHLQHTLLGHPASRD 60
           MNNP  EDSDQTTVVGFEVPKSPDS+YNNVYLGSED+ARDPP VPPHLQHTLL HPASRD
Sbjct: 1   MNNPFPEDSDQTTVVGFEVPKSPDSTYNNVYLGSEDDARDPPPVPPHLQHTLLSHPASRD 60

Query: 61  AGETLPLPQNAILNHLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPVHRRGSS 116
           AG TLPLPQN +LNHLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPVHRRGSS
Sbjct: 61  AGGTLPLPQNVVLNHLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPVHRRGSS 115

[Close]

BLAST of Sed0013703 vs. ExPASy TrEMBL
Match: A0A6J1KA31 (SNF1-related protein kinase regulatory subunit beta-3-like OS=Cucurbita maxima OX=3661 GN=LOC111491475 PE=3 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 1.9e-54
Identity = 105/115 (91.30%), Postives = 108/115 (93.91%), Query Frame = 0


Query: 1   MNNPCSEDSDQTTVVGFEVPKSPDSSYNNVYLGSEDEARDPPLVPPHLQHTLLGHPASRD 60
           MNNP  EDSDQTTVVGFEVPKSPDS+YNNVYLGSED+ARDPP VPPHLQHTLL HPA RD
Sbjct: 1   MNNPFPEDSDQTTVVGFEVPKSPDSTYNNVYLGSEDDARDPPPVPPHLQHTLLSHPAGRD 60

Query: 61  AGETLPLPQNAILNHLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPVHRRGSS 116
           AG TLPLPQN +LNHLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPVHRRGSS
Sbjct: 61  AGGTLPLPQNVVLNHLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPVHRRGSS 115

[Close]

BLAST of Sed0013703 vs. TAIR 10
Match: AT2G28060.1 (5'-AMP-activated protein kinase beta-2 subunit protein )

HSP 1 Score: 156.0 bits (393), Expect = 1.9e-38
Identity = 76/115 (66.09%), Postives = 90/115 (78.26%), Query Frame = 0


Query: 1   MNNPCSEDSDQTTVVGFEVPKSPDSSYNNVYLGSEDEARDPPLVPPHLQHTLLGHPASRD 60
           MN+   +D + TTVVGFEVP SP SSYNNVY  +EDE RDPP VPPHLQH+LLG+  S  
Sbjct: 1   MNSQNPDDHEDTTVVGFEVPVSPVSSYNNVYSSTEDETRDPPAVPPHLQHSLLGNQGSM- 60

Query: 61  AGETLPLPQNAILNHLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPVHRRGSS 116
             E    PQN +LNHL+IENR+ PRSVVALGF+HRF +K+VTVV+YKPV RRGS+
Sbjct: 61  --ELAYAPQNVVLNHLYIENRDAPRSVVALGFSHRFRTKFVTVVIYKPVQRRGSA 112

[Close]

BLAST of Sed0013703 vs. TAIR 10
Match: AT4G16360.1 (5'-AMP-activated protein kinase beta-2 subunit protein )

HSP 1 Score: 116.3 bits (290), Expect = 1.6e-26
Identity = 57/103 (55.34%), Postives = 78/103 (75.73%), Query Frame = 0


Query: 10  DQTTVVGFEVPKSPDSSYNNVYLGSEDEARDPPLVPPHLQHTLLGHPASR-DAGETLPLP 69
           D  ++ GFE P+SP++SY+N+ LG+ED +++PP+VPPHLQ TLL  PA+  D    LP P
Sbjct: 157 DIQSISGFEPPQSPENSYSNLLLGAEDYSKEPPVVPPHLQMTLLNLPAANPDIPSPLPRP 216

Query: 70  QNAILNHLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPVHR 112
           Q+ ILNHL+++  ++  SVVALG THRF +KYVTVVLYK + R
Sbjct: 217 QHVILNHLYMQKGKSGPSVVALGSTHRFLAKYVTVVLYKSLQR 259

[Close]

BLAST of Sed0013703 vs. TAIR 10
Match: AT4G16360.2 (5'-AMP-activated protein kinase beta-2 subunit protein )

HSP 1 Score: 116.3 bits (290), Expect = 1.6e-26
Identity = 57/103 (55.34%), Postives = 78/103 (75.73%), Query Frame = 0


Query: 10  DQTTVVGFEVPKSPDSSYNNVYLGSEDEARDPPLVPPHLQHTLLGHPASR-DAGETLPLP 69
           D  ++ GFE P+SP++SY+N+ LG+ED +++PP+VPPHLQ TLL  PA+  D    LP P
Sbjct: 156 DIQSISGFEPPQSPENSYSNLLLGAEDYSKEPPVVPPHLQMTLLNLPAANPDIPSPLPRP 215

Query: 70  QNAILNHLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPVHR 112
           Q+ ILNHL+++  ++  SVVALG THRF +KYVTVVLYK + R
Sbjct: 216 QHVILNHLYMQKGKSGPSVVALGSTHRFLAKYVTVVLYKSLQR 258

[Close]

BLAST of Sed0013703 vs. TAIR 10
Match: AT4G16360.3 (5'-AMP-activated protein kinase beta-2 subunit protein )

HSP 1 Score: 116.3 bits (290), Expect = 1.6e-26
Identity = 57/103 (55.34%), Postives = 78/103 (75.73%), Query Frame = 0


Query: 10  DQTTVVGFEVPKSPDSSYNNVYLGSEDEARDPPLVPPHLQHTLLGHPASR-DAGETLPLP 69
           D  ++ GFE P+SP++SY+N+ LG+ED +++PP+VPPHLQ TLL  PA+  D    LP P
Sbjct: 159 DIQSISGFEPPQSPENSYSNLLLGAEDYSKEPPVVPPHLQMTLLNLPAANPDIPSPLPRP 218

Query: 70  QNAILNHLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPVHR 112
           Q+ ILNHL+++  ++  SVVALG THRF +KYVTVVLYK + R
Sbjct: 219 QHVILNHLYMQKGKSGPSVVALGSTHRFLAKYVTVVLYKSLQR 261

[Close]

BLAST of Sed0013703 vs. TAIR 10
Match: AT5G21170.1 (5'-AMP-activated protein kinase beta-2 subunit protein )

HSP 1 Score: 101.3 bits (251), Expect = 5.5e-22
Identity = 51/99 (51.52%), Postives = 65/99 (65.66%), Query Frame = 0


Query: 13  TVVGFEVPKSPDSSYNNVYLGSEDEARDPPLVPPHLQHTLLGHPASRDAGETLPLPQNAI 72
           ++V FE P SPD SY      +ED A++P  VPP L  TLLG   + +       PQ+ +
Sbjct: 188 SIVEFEAPPSPDHSYGQTLPAAEDYAKEPLAVPPQLHLTLLG---TTEETAIATKPQHVV 247

Query: 73  LNHLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPVHR 112
           LNH+FIE   TP+S+VALG THRF SKY+TVVLYKP+ R
Sbjct: 248 LNHVFIEQGWTPQSIVALGLTHRFESKYITVVLYKPLTR 283

The following BLAST results are available for this feature:

BLAST of Sed0013703 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038902942.1	1.4e-56	94.02	SNF1-related protein kinase regulatory subunit beta-3 [Benincasa hispida] >XP_03...	[more]
XP_004145755.1	9.2e-56	93.16	SNF1-related protein kinase regulatory subunit beta-3 [Cucumis sativus] >XP_0084...	[more]
XP_022958406.1	1.3e-54	92.17	SNF1-related protein kinase regulatory subunit beta-3-like [Cucurbita moschata] ...	[more]
XP_022996167.1	3.9e-54	91.30	SNF1-related protein kinase regulatory subunit beta-3-like [Cucurbita maxima] >X...	[more]
XP_022140750.1	2.5e-53	88.89	SNF1-related protein kinase regulatory subunit beta-3 [Momordica charantia] >XP_...	[more]

BLAST of Sed0013703 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZUU8	2.6e-37	66.09	SNF1-related protein kinase regulatory subunit beta-3 OS=Arabidopsis thaliana OX...	[more]
Q9SCY5	2.3e-25	55.34	SNF1-related protein kinase regulatory subunit beta-2 OS=Arabidopsis thaliana OX...	[more]
Q84VQ1	7.7e-21	51.52	SNF1-related protein kinase regulatory subunit beta-1 OS=Arabidopsis thaliana OX...	[more]
Q9QZH4	6.7e-09	35.79	5'-AMP-activated protein kinase subunit beta-2 OS=Rattus norvegicus OX=10116 GN=...	[more]
O43741	2.6e-08	34.74	5'-AMP-activated protein kinase subunit beta-2 OS=Homo sapiens OX=9606 GN=PRKAB2...	[more]

BLAST of Sed0013703 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CP39	4.5e-56	93.16	SNF1-related protein kinase regulatory subunit beta-3 OS=Cucumis melo OX=3656 GN...	[more]
A0A5A7T1A3	4.5e-56	93.16	SNF1-related protein kinase regulatory subunit beta-3 isoform X2 OS=Cucumis melo...	[more]
A0A0A0KBG3	4.5e-56	93.16	AMPKBI domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G147560 PE=3...	[more]
A0A6J1H1Z8	6.5e-55	92.17	SNF1-related protein kinase regulatory subunit beta-3-like OS=Cucurbita moschata...	[more]
A0A6J1KA31	1.9e-54	91.30	SNF1-related protein kinase regulatory subunit beta-3-like OS=Cucurbita maxima O...	[more]

BLAST of Sed0013703 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G28060.1	1.9e-38	66.09	5'-AMP-activated protein kinase beta-2 subunit protein	[more]
AT4G16360.1	1.6e-26	55.34	5'-AMP-activated protein kinase beta-2 subunit protein	[more]
AT4G16360.2	1.6e-26	55.34	5'-AMP-activated protein kinase beta-2 subunit protein	[more]
AT4G16360.3	1.6e-26	55.34	5'-AMP-activated protein kinase beta-2 subunit protein	[more]
AT5G21170.1	5.5e-22	51.52	5'-AMP-activated protein kinase beta-2 subunit protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006828	Association with the SNF1 complex (ASC) domain	SMART	SM01010	AMPKBI_2	coord: 20..109 e-value: 2.2E-28 score: 110.3
IPR006828	Association with the SNF1 complex (ASC) domain	PFAM	PF04739	AMPKBI	coord: 38..108 e-value: 6.8E-21 score: 74.3
None	No IPR available	GENE3D	6.20.250.60		coord: 13..109 e-value: 1.1E-23 score: 85.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
IPR030067	SNF1-related protein kinase regulatory subunit beta-3	PANTHER	PTHR46316:SF5	SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT BETA-3	coord: 1..115
IPR043554	SNF1-related protein kinase regulatory subunit beta	PANTHER	PTHR46316	SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT BETA-1	coord: 1..115
IPR037256	ASC domain superfamily	SUPERFAMILY	160219	AMPKBI-like	coord: 12..109

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0013703.1	Sed0013703.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043562	cellular response to nitrogen levels
biological_process	GO:0016310	phosphorylation
biological_process	GO:0009744	response to sucrose
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0016301	kinase activity
molecular_function	GO:0005515	protein binding