Sed0013689 (gene) Chayote v1

Overview


Name	Sed0013689
Type	gene
Organism	Sechium edule (Chayote v1)
Description	50S ribosomal protein L3
Location	LG09: 972703 .. 975319 (+)
RNA-Seq Expression	Sed0013689
Synteny	Sed0013689

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAAAAATAAAATAAAATAAATAAACGGATAAGAAAATAGGCCACTCTTCTCAATCCCCATTTCTTCATCTTCATCTTCTTCACATGAATCACTGAAAAAAACCAGAGAAGAAGAAAAAAATGTCAATCCTATCATTTCCTTCACCTTCAACCTCAACCAGAAATCCAATTCCATCTTCTTCATCTCCAAGACTGAGATCTTCATTCCTCGCCCAACCTCCCAAACCCAATCTCTGCCTCAAATTTCCCACCTCAAATCGCACCAACAATGGCGGAACAGTACGCATGAGCATGGAGGCCGGCATCGGCGTAATGGCCACCAAGCTCGGCATGATGAGCTTCTTCGAGCCCGACGGCAAGGTCGTTCCGGTGACGGTGGTCGGTTTCAAGGAAGGGAATATCGTGACGCAGCTGAAGACGGAGGCGACCGACGGCTACAGCGCCGTTCAGGTCGGGTACCGTAGGGTTAGGGATCGGAAATTGACGAAACCGGAATTAGGGCATTTGGAGAAAGCGGGAGCGATCCCCATGCGGCATTTGCAGGAGTTTCGGCTTCCGTCTGTTGAGGGATTTGAACCGAATCAGCGATTGGATTTCAATGAGCTTTTCAAGGAAGGGGATCTGGTTGATGTTTCTGGCACTACCATTGGAAAGGGATTTCAAGGTTTTGTGTTTCTTGTTCTTGCTTTTGCTCATTCTGTTTTGGATTTCTGTGTTTAATTGCTTTGAGATTTTCATTTTGCTCTGAGTTTTTGGTTTTTGTTCTGTTCCTGCATGATGTTGGAGTTGAATTTAGGCATGCTTGAGATGGATTAAACATGAATCTTCATTGGCATTTTTGCTGGTTTGAAATTTGAATACACAACTGCATAGACAATTCCTGTTAGGAAATCGGAACAACAATCAAGTTAGAGTAGACTAAATGTGAGACAAAACACGAAGATTTAGAGTTGTTTTCTAATAGTGTGTTAGCTACGACCATGGGTACAGAAGAGAACGATTTTGTAATTTGGATATGTCATCTAATCTCAAAGGTTTTGTGTCCTATGCTGTTTCACAAGTTCATCTGTGAGACTTTTTTTTTTTTTTTTGAAAATCGGGAAATCGGAGTTTCGCTTCCCTATACTTGCGGCACCAGTGGCTTGCCCCTAGGCTGTGGCACTTCGGGATACTTTGAAGGGTATTCTAGTTTAAGGGCTTTTCAGTGGTCTCGAACCAGAGATCTGTAAGACTTAAATTTTGTTTACAAGTCTTGTTTGTGGATTAGGATGCCTGTGTGGTCTTTGGTAAGCTTTCATCCCAATGACATCATTGTCATCCCTTGTCGTTAGGGCGGGAAATTTGAACCTCTGACTTCTTAGTCTAGAATACATGCATTTAAAGGTTGAGACCTACTCAAGATTCCTGTCGCTTGTCATGGTAGACTCTGAAAGATTGTATTTTTTAGTACAAGAACAATATTTGAGGTTGGGAGATTCGAACCCACAATTTTGTTGTCGAAGATACATGTCAATTACCGCTAGTTGAAGCCCATTTTCGCCTATAAGATTGTACTTGCATCTTCATGTACATGCCAAACTATTTAATATTCTTGTAACACTCTCCCTCTTATATAGGTTCAAGTATTAATACTCAACATATATTTATGCAAATACAAAATCTTTTGCTCTAGCCTCTAGTACCATATTAAATCACCCTCCCTTAGTTGGACTTAAACATGAGAGTTTAAGTTAAAACTTGATCATTTAATATGTTCTCGACACCCTCATGTGTGGACTTAGATATTAATTTGATTTACAAGACCCAACATGCGAAGTAATGTAGTCCCTAAGGGGTGACGCAGTGGTTGAAGACTTGGGCTTTGAGAGTATACTCCCCTCAAGGTTCTGGATTCGAGACTCACTTGTGACATTACTGCTTCGATGTCTCTGGTGCCTAGCCTAGGAACGGGCGTAGTAACCCTTGTTTAAAAAAAAACATGTGACTTAATGTAAAGTTAGAAGGAAACCAGTCACAAAAGTAAATTTTACTCATCTTTTGTTCTCCACTCTTTTTAACACTACTCTCCTTATATATACTCTTCCAACTTTTCTAATTCTTCTCTAGGTGGAATCAAGAGACACAACTTCAAAAGAGGTCAGATGACCCACGGTTCCAAGAGTCACAGGGCACTCGGATCGATCGGTGCAGGAACTACACCCGGTCGCGTGTACAAGGGGAAGAAGATGCCCGGAAGGATGGGAGGAACGAAGACAAAGATCAGAAAGCTCAAGATTGTGAAAATTGATGATGAACTTAATGTTGTGATGATCAAAGGAGCTGTCCCGGGTAAGCCCGGAAACCTTCTTCGAATAGCTCCTGCAAAGATAGTAGGAAAGAACATTCCTAAGAACTAGCTTTAGCTCATATGTTAGAATTGTGTGCTTTCAATTCCTTTTTGTTTCTTGAGTTGTTGTATCTCTTCAACTTGTTATTTGTATCATGATAAGTTTTACTGTTGAGGTATCCAGAAATCTTTTAATCCATTCCCAGCTTTTCATCAGTTGGTGATTACAAGTAATAGGCTGAATTCATCTGTTGATATCCTTTTTTATTATAAATTGTTGTATCTCTTCAA

mRNA sequence

GAAAAAATAAAATAAAATAAATAAACGGATAAGAAAATAGGCCACTCTTCTCAATCCCCATTTCTTCATCTTCATCTTCTTCACATGAATCACTGAAAAAAACCAGAGAAGAAGAAAAAAATGTCAATCCTATCATTTCCTTCACCTTCAACCTCAACCAGAAATCCAATTCCATCTTCTTCATCTCCAAGACTGAGATCTTCATTCCTCGCCCAACCTCCCAAACCCAATCTCTGCCTCAAATTTCCCACCTCAAATCGCACCAACAATGGCGGAACAGTACGCATGAGCATGGAGGCCGGCATCGGCGTAATGGCCACCAAGCTCGGCATGATGAGCTTCTTCGAGCCCGACGGCAAGGTCGTTCCGGTGACGGTGGTCGGTTTCAAGGAAGGGAATATCGTGACGCAGCTGAAGACGGAGGCGACCGACGGCTACAGCGCCGTTCAGGTCGGGTACCGTAGGGTTAGGGATCGGAAATTGACGAAACCGGAATTAGGGCATTTGGAGAAAGCGGGAGCGATCCCCATGCGGCATTTGCAGGAGTTTCGGCTTCCGTCTGTTGAGGGATTTGAACCGAATCAGCGATTGGATTTCAATGAGCTTTTCAAGGAAGGGGATCTGGTTGATGTTTCTGGCACTACCATTGGAAAGGGATTTCAAGGTGGAATCAAGAGACACAACTTCAAAAGAGGTCAGATGACCCACGGTTCCAAGAGTCACAGGGCACTCGGATCGATCGGTGCAGGAACTACACCCGGTCGCGTGTACAAGGGGAAGAAGATGCCCGGAAGGATGGGAGGAACGAAGACAAAGATCAGAAAGCTCAAGATTGTGAAAATTGATGATGAACTTAATGTTGTGATGATCAAAGGAGCTGTCCCGGGTAAGCCCGGAAACCTTCTTCGAATAGCTCCTGCAAAGATAGTAGGAAAGAACATTCCTAAGAACTAGCTTTAGCTCATATGTTAGAATTGTGTGCTTTCAATTCCTTTTTGTTTCTTGAGTTGTTGTATCTCTTCAACTTGTTATTTGTATCATGATAAGTTTTACTGTTGAGGTATCCAGAAATCTTTTAATCCATTCCCAGCTTTTCATCAGTTGGTGATTACAAGTAATAGGCTGAATTCATCTGTTGATATCCTTTTTTATTATAAATTGTTGTATCTCTTCAA

Coding sequence (CDS)

ATGTCAATCCTATCATTTCCTTCACCTTCAACCTCAACCAGAAATCCAATTCCATCTTCTTCATCTCCAAGACTGAGATCTTCATTCCTCGCCCAACCTCCCAAACCCAATCTCTGCCTCAAATTTCCCACCTCAAATCGCACCAACAATGGCGGAACAGTACGCATGAGCATGGAGGCCGGCATCGGCGTAATGGCCACCAAGCTCGGCATGATGAGCTTCTTCGAGCCCGACGGCAAGGTCGTTCCGGTGACGGTGGTCGGTTTCAAGGAAGGGAATATCGTGACGCAGCTGAAGACGGAGGCGACCGACGGCTACAGCGCCGTTCAGGTCGGGTACCGTAGGGTTAGGGATCGGAAATTGACGAAACCGGAATTAGGGCATTTGGAGAAAGCGGGAGCGATCCCCATGCGGCATTTGCAGGAGTTTCGGCTTCCGTCTGTTGAGGGATTTGAACCGAATCAGCGATTGGATTTCAATGAGCTTTTCAAGGAAGGGGATCTGGTTGATGTTTCTGGCACTACCATTGGAAAGGGATTTCAAGGTGGAATCAAGAGACACAACTTCAAAAGAGGTCAGATGACCCACGGTTCCAAGAGTCACAGGGCACTCGGATCGATCGGTGCAGGAACTACACCCGGTCGCGTGTACAAGGGGAAGAAGATGCCCGGAAGGATGGGAGGAACGAAGACAAAGATCAGAAAGCTCAAGATTGTGAAAATTGATGATGAACTTAATGTTGTGATGATCAAAGGAGCTGTCCCGGGTAAGCCCGGAAACCTTCTTCGAATAGCTCCTGCAAAGATAGTAGGAAAGAACATTCCTAAGAACTAG

Protein sequence

MSILSFPSPSTSTRNPIPSSSSPRLRSSFLAQPPKPNLCLKFPTSNRTNNGGTVRMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQLKTEATDGYSAVQVGYRRVRDRKLTKPELGHLEKAGAIPMRHLQEFRLPSVEGFEPNQRLDFNELFKEGDLVDVSGTTIGKGFQGGIKRHNFKRGQMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMGGTKTKIRKLKIVKIDDELNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN

Homology

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BLAST of Sed0013689 vs. NCBI nr
Match: XP_022155788.1 (50S ribosomal protein L3, chloroplastic [Momordica charantia])

HSP 1 Score: 467.2 bits (1201), Expect = 9.6e-128
Identity = 246/291 (84.54%), Postives = 263/291 (90.38%), Query Frame = 0


Query: 1   MSILSFPSPSTSTRNPI-----PSSSSPRLRSSFLAQPPKP------NLCLKFP---TSN 60
           M+++SF SPSTST +PI      SSSSPRLR+SFLA PP        +L L+FP   T+ 
Sbjct: 1   MAVVSFSSPSTSTSHPIFSNNPSSSSSPRLRTSFLALPPPKSHRNNFSLRLQFPRPSTAT 60

Query: 61  RTNNGGTVRMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQLKTEATDGY 120
           RTN+G ++ MSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQ+KTEATDGY
Sbjct: 61  RTNHGLSICMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQVKTEATDGY 120

Query: 121 SAVQVGYRRVRDRKLTKPELGHLEKAGAIPMRHLQEFRLPSVEGFEPNQRLDFNELFKEG 180
           SAVQVGYRRVRDRKLTKPELGHL+KAG IPMRHLQEFRL SV+GFEPNQR+DFNELFKEG
Sbjct: 121 SAVQVGYRRVRDRKLTKPELGHLQKAGVIPMRHLQEFRLQSVDGFEPNQRMDFNELFKEG 180

Query: 181 DLVDVSGTTIGKGFQGGIKRHNFKRGQMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGRM 240
           DLVDVSG TIGKGFQGGIKRHNFKRG M+HGSKSHRALGSIGAGTTPGRVYKGKKMPGRM
Sbjct: 181 DLVDVSGITIGKGFQGGIKRHNFKRGPMSHGSKSHRALGSIGAGTTPGRVYKGKKMPGRM 240

Query: 241 GGTKTKIRKLKIVKIDDELNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN 278
           GGTKTKIRKLKIVKIDD+LNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN
Sbjct: 241 GGTKTKIRKLKIVKIDDDLNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN 291

[Close]

BLAST of Sed0013689 vs. NCBI nr
Match: XP_023515139.1 (50S ribosomal protein L3, chloroplastic-like [Cucurbita pepo subsp. pepo] >KAG7026080.1 50S ribosomal protein L3, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 460.3 bits (1183), Expect = 1.2e-125
Identity = 248/290 (85.52%), Postives = 257/290 (88.62%), Query Frame = 0


Query: 1   MSILSFPSPSTSTRNPI------PSSSSPRLRSSFLAQPPK----PNLCLKFP---TSNR 60
           MS + F S STS R+PI       SSSS RLR+SFLA P K     NL L+FP   T+ R
Sbjct: 1   MSAIPFSSASTSIRHPIFTNNASSSSSSLRLRTSFLALPLKSHHNSNLSLQFPAQRTTRR 60

Query: 61  TNNGGTVRMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQLKTEATDGYS 120
           TNNG  V MSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQ+KTEATDGYS
Sbjct: 61  TNNGVPVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQVKTEATDGYS 120

Query: 121 AVQVGYRRVRDRKLTKPELGHLEKAGAIPMRHLQEFRLPSVEGFEPNQRLDFNELFKEGD 180
           AVQVGYRRVRDRKLTKPELGHLEKAGAIPMRHLQEFRL +V+GFEPNQRL FNELFKEGD
Sbjct: 121 AVQVGYRRVRDRKLTKPELGHLEKAGAIPMRHLQEFRLVNVDGFEPNQRLVFNELFKEGD 180

Query: 181 LVDVSGTTIGKGFQGGIKRHNFKRGQMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMG 240
           LVDVSG TIGKGFQGGIKRHNFKRG MTHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMG
Sbjct: 181 LVDVSGITIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMG 240

Query: 241 GTKTKIRKLKIVKIDDELNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN 278
           GTK KIRKLKIVK+DDELNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN
Sbjct: 241 GTKRKIRKLKIVKVDDELNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN 290

[Close]

BLAST of Sed0013689 vs. NCBI nr
Match: XP_022999904.1 (50S ribosomal protein L3, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 459.5 bits (1181), Expect = 2.0e-125
Identity = 248/290 (85.52%), Postives = 257/290 (88.62%), Query Frame = 0


Query: 1   MSILSFPSPSTSTRNPI------PSSSSPRLRSSFLAQPPK----PNLCLKFP---TSNR 60
           MS + F S STS R+PI       SSSS RLR+SFLA P K     NL L+FP   T+ R
Sbjct: 1   MSAIPFSSASTSIRHPIFTNNASSSSSSLRLRTSFLALPLKSHHNSNLRLQFPAQRTTRR 60

Query: 61  TNNGGTVRMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQLKTEATDGYS 120
           TNNG  V MSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQ+KTEATDGYS
Sbjct: 61  TNNGVPVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQVKTEATDGYS 120

Query: 121 AVQVGYRRVRDRKLTKPELGHLEKAGAIPMRHLQEFRLPSVEGFEPNQRLDFNELFKEGD 180
           AVQVGYRRVRDRKLTKPELGHLEKAGAIPMRHLQEFRL +V+GFEPNQRL FNELFKEGD
Sbjct: 121 AVQVGYRRVRDRKLTKPELGHLEKAGAIPMRHLQEFRLVNVDGFEPNQRLVFNELFKEGD 180

Query: 181 LVDVSGTTIGKGFQGGIKRHNFKRGQMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMG 240
           LVDVSG TIGKGFQGGIKRHNFKRG MTHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMG
Sbjct: 181 LVDVSGITIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMG 240

Query: 241 GTKTKIRKLKIVKIDDELNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN 278
           GTK KIRKLKIVK+DDELNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN
Sbjct: 241 GTKRKIRKLKIVKVDDELNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN 290

[Close]

BLAST of Sed0013689 vs. NCBI nr
Match: XP_022964564.1 (50S ribosomal protein L3, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 457.6 bits (1176), Expect = 7.6e-125
Identity = 247/290 (85.17%), Postives = 256/290 (88.28%), Query Frame = 0


Query: 1   MSILSFPSPSTSTRNPI------PSSSSPRLRSSFLAQPPK----PNLCLKFP---TSNR 60
           MS + F S STS R+PI       SSSS RLR+SFLA P K     NL L+FP   T+  
Sbjct: 1   MSAIPFSSASTSIRHPIFTNNASSSSSSLRLRTSFLALPLKSHHNSNLRLQFPAQRTTRH 60

Query: 61  TNNGGTVRMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQLKTEATDGYS 120
           TNNG  V MSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQ+KTEATDGYS
Sbjct: 61  TNNGVPVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQVKTEATDGYS 120

Query: 121 AVQVGYRRVRDRKLTKPELGHLEKAGAIPMRHLQEFRLPSVEGFEPNQRLDFNELFKEGD 180
           AVQVGYRRVRDRKLTKPELGHLEKAGAIPMRHLQEFRL +V+GFEPNQRL FNELFKEGD
Sbjct: 121 AVQVGYRRVRDRKLTKPELGHLEKAGAIPMRHLQEFRLVNVDGFEPNQRLVFNELFKEGD 180

Query: 181 LVDVSGTTIGKGFQGGIKRHNFKRGQMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMG 240
           LVDVSG TIGKGFQGGIKRHNFKRG MTHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMG
Sbjct: 181 LVDVSGITIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMG 240

Query: 241 GTKTKIRKLKIVKIDDELNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN 278
           GTK KIRKLKIVK+DDELNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN
Sbjct: 241 GTKRKIRKLKIVKVDDELNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN 290

[Close]

BLAST of Sed0013689 vs. NCBI nr
Match: KAG6574805.1 (50S ribosomal protein L3, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7013387.1 50S ribosomal protein L3, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 454.5 bits (1168), Expect = 6.4e-124
Identity = 244/292 (83.56%), Postives = 259/292 (88.70%), Query Frame = 0


Query: 1   MSILSFPSPSTSTRNPI----PSSSSP----RLRSSFLAQPPKP----NLCLKFP---TS 60
           MS++S  S STS R+PI     SSSSP    +LR+SFLA P K     NL  +FP   T+
Sbjct: 1   MSVISISSASTSNRHPIFTNNASSSSPSSSLKLRTSFLALPLKSHRNNNLRFQFPRPRTT 60

Query: 61  NRTNNGGTVRMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQLKTEATDG 120
            R N+G +V MSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQ+KTEATDG
Sbjct: 61  RRPNDGLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQIKTEATDG 120

Query: 121 YSAVQVGYRRVRDRKLTKPELGHLEKAGAIPMRHLQEFRLPSVEGFEPNQRLDFNELFKE 180
           YSAVQVGYRRVRDRKLTKPE+GHL+KAGAIPMRHLQEFRL S++GFEPNQRL FNELFKE
Sbjct: 121 YSAVQVGYRRVRDRKLTKPEMGHLQKAGAIPMRHLQEFRLESIDGFEPNQRLVFNELFKE 180

Query: 181 GDLVDVSGTTIGKGFQGGIKRHNFKRGQMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGR 240
           GDLVDVSGTTIGKGFQGGIKRHNFKRG MTHGSKSHRALGSIGAGTTPGRVYKGKKMPGR
Sbjct: 181 GDLVDVSGTTIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGR 240

Query: 241 MGGTKTKIRKLKIVKIDDELNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN 278
           MGGTK KIRKLKIVKIDD+LNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN
Sbjct: 241 MGGTKRKIRKLKIVKIDDDLNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN 292

[Close]

BLAST of Sed0013689 vs. ExPASy Swiss-Prot
Match: O80360 (50S ribosomal protein L3, chloroplastic (Fragment) OS=Nicotiana tabacum OX=4097 GN=RPL3 PE=2 SV=1)

HSP 1 Score: 405.6 bits (1041), Expect = 4.5e-112
Identity = 205/253 (81.03%), Postives = 225/253 (88.93%), Query Frame = 0


Query: 25  LRSSFLAQPPKPNLCLKFPTSNRTNNGGTVRMSMEAGIGVMATKLGMMSFFEPDGKVVPV 84
           LRS FL + P   L    PTS   +   ++  S+EAG+GVMATKLGMMSFFE  G VVPV
Sbjct: 8   LRSPFLHRLPLRALKTHKPTSLHISK-SSISASLEAGVGVMATKLGMMSFFEESGTVVPV 67

Query: 85  TVVGFKEGNIVTQLKTEATDGYSAVQVGYRRVRDRKLTKPELGHLEKAGAIPMRHLQEFR 144
           TVVGF+EGNIVTQ+KTEATDGY+AVQVGYRRVRDRKLTKPE+GHLEK+G IP+RHLQEFR
Sbjct: 68  TVVGFREGNIVTQIKTEATDGYNAVQVGYRRVRDRKLTKPEMGHLEKSGIIPLRHLQEFR 127

Query: 145 LPSVEGFEPNQRLDFNELFKEGDLVDVSGTTIGKGFQGGIKRHNFKRGQMTHGSKSHRAL 204
           L S++GFE  Q+LDF ELFKEGDLVDVSGTTIGKGFQGGIKRHNFKRGQMTHGSKSHR L
Sbjct: 128 LQSIDGFEVTQKLDFGELFKEGDLVDVSGTTIGKGFQGGIKRHNFKRGQMTHGSKSHRQL 187

Query: 205 GSIGAGTTPGRVYKGKKMPGRMGGTKTKIRKLKIVKIDDELNVVMIKGAVPGKPGNLLRI 264
           GSIGAGTTPGRVYKGKKMPGRMGGTK KIRKLKIVKIDD+LN++MIKGA+PGKPGNLLRI
Sbjct: 188 GSIGAGTTPGRVYKGKKMPGRMGGTKRKIRKLKIVKIDDQLNIIMIKGALPGKPGNLLRI 247

Query: 265 APAKIVGKNIPKN 278
           APAKIVGKNIPK+
Sbjct: 248 APAKIVGKNIPKS 259

[Close]

BLAST of Sed0013689 vs. ExPASy Swiss-Prot
Match: Q9SKX4 (50S ribosomal protein L3-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL3A PE=2 SV=1)

HSP 1 Score: 394.8 bits (1013), Expect = 8.0e-109
Identity = 208/277 (75.09%), Postives = 232/277 (83.75%), Query Frame = 0


Query: 1   MSILSFPSPSTSTRNPIPSSSSPRLRSSFLAQPPKPNLCLKFPTSNRTNNGGTVRMSMEA 60
           M+++SFPS    T     + SS     +FL   P  +  L   +S +T     V  SMEA
Sbjct: 5   MAVVSFPSLLNKT-----TLSSSLFTPTFL---PAKSSSLLIKSSPKTR--FVVSSSMEA 64

Query: 61  GIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQLKTEATDGYSAVQVGYRRVRDRK 120
           GIGVM +KLGMMSFFE DG VVPVTVVGF+EGNIVTQ+KT ATDGY AVQ+GYRRVRD+K
Sbjct: 65  GIGVMGSKLGMMSFFEEDGTVVPVTVVGFREGNIVTQIKTLATDGYDAVQIGYRRVRDKK 124

Query: 121 LTKPELGHLEKAGAIPMRHLQEFRLPSVEGFEPNQRLDFNELFKEGDLVDVSGTTIGKGF 180
           LTKPE GHL+KAG IPMRHLQEFRL ++EGFEPNQ+L F+E+FKEGDLVDV+GTTIGKGF
Sbjct: 125 LTKPETGHLQKAGTIPMRHLQEFRLTNIEGFEPNQKLVFDEIFKEGDLVDVAGTTIGKGF 184

Query: 181 QGGIKRHNFKRGQMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMGGTKTKIRKLKIVK 240
           QGGIKRH+FKRGQMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMGGT+TKIRKLKIVK
Sbjct: 185 QGGIKRHHFKRGQMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMGGTRTKIRKLKIVK 244

Query: 241 IDDELNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN 278
           +D ELNVVMIKGA+PGKPGNLLRI PAKIVG NIPKN
Sbjct: 245 VDKELNVVMIKGALPGKPGNLLRITPAKIVGVNIPKN 271

[Close]

BLAST of Sed0013689 vs. ExPASy Swiss-Prot
Match: P82191 (50S ribosomal protein L3, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL3 PE=1 SV=2)

HSP 1 Score: 386.0 bits (990), Expect = 3.7e-106
Identity = 204/274 (74.45%), Postives = 227/274 (82.85%), Query Frame = 0


Query: 11  TSTRNPIPSSSSPRLRSSFLAQPPKPNLCLKFPTSNRTNN-----GG--TVRMSMEAGIG 70
           +S+ N  P   S RL +SF+   P   + LK  + +R+       GG     MS++AGIG
Sbjct: 33  SSSVNGTPKVQSLRLSTSFVCS-PNQIIKLKSVSPSRSTQLRRAVGGLEIKMMSVDAGIG 92

Query: 71  VMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQLKTEATDGYSAVQVGYRRVRDRKLTK 130
           VM TKLGMMSFFE DG VVPVTV+GFKEGNIVTQ+KTE+TDGY+AVQVGY R+RDRKLT 
Sbjct: 93  VMGTKLGMMSFFEEDGTVVPVTVIGFKEGNIVTQVKTESTDGYNAVQVGYERLRDRKLTM 152

Query: 131 PELGHLEKAGAIPMRHLQEFRLPSVEGFEPNQRLDFNELFKEGDLVDVSGTTIGKGFQGG 190
           PE GHL KAG IPMRHLQEFRL SV+ F P+Q+L F ELFKEGD+VD+SGTTIGKGFQGG
Sbjct: 153 PERGHLNKAGVIPMRHLQEFRLVSVDDFTPSQKLLFEELFKEGDMVDISGTTIGKGFQGG 212

Query: 191 IKRHNFKRGQMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMGGTKTKIRKLKIVKIDD 250
           IKRHNFKRG MTHGSKSHRALGSIGAGTTPG VYKGKKMPGRMGGTKTKIRKLKI+KID 
Sbjct: 213 IKRHNFKRGLMTHGSKSHRALGSIGAGTTPGHVYKGKKMPGRMGGTKTKIRKLKIMKIDT 272

Query: 251 ELNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN 278
           +L VVMIKGAVPGKPGNLLR+APAKIVGKNIPKN
Sbjct: 273 DLRVVMIKGAVPGKPGNLLRLAPAKIVGKNIPKN 305

[Close]

BLAST of Sed0013689 vs. ExPASy Swiss-Prot
Match: B1XJT9 (50S ribosomal protein L3 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) OX=32049 GN=rplC PE=3 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 5.4e-65
Identity = 125/213 (58.69%), Postives = 164/213 (77.00%), Query Frame = 0


Query: 62  IGVMATKLGMMSFFEPD-GKVVPVTVVGFKEGN-IVTQLKTEATDGYSAVQVGYRRVRDR 121
           +G++ TKLGM   F+ + G  +PVTVV  + G   VTQ+KT  TDGY++VQ+GY  V+++
Sbjct: 3   LGILGTKLGMTQIFDNETGTAIPVTVV--QAGPCTVTQIKTSETDGYTSVQIGYGDVKEK 62

Query: 122 KLTKPELGHLEKAGAIPMRHLQEFRLPSVEGFEPNQRLDFNELFKEGDLVDVSGTTIGKG 181
            LTKP+LGHL+KA A P+RHL+E+RL  V G+E  Q +  N +F+ G +VDVSG TIG+G
Sbjct: 63  NLTKPQLGHLKKADAAPLRHLKEYRLDDVSGYELGQAITAN-IFEAGQVVDVSGNTIGRG 122

Query: 182 FQGGIKRHNFKRGQMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMGGTKTKIRKLKIV 241
           F G  KRHNFKRG MTHGSK+HR  GS GAGTTPGRVY GK+M GR GGTK  +RKL++V
Sbjct: 123 FAGYQKRHNFKRGNMTHGSKNHRLPGSTGAGTTPGRVYPGKRMAGRYGGTKITVRKLEVV 182

Query: 242 KIDDELNVVMIKGAVPGKPGNLLRIAPAKIVGK 273
           ++D+E N+++IKGA+PGK GNLL IAP+ IVG+
Sbjct: 183 RVDEEKNLLLIKGAIPGKAGNLLSIAPSNIVGQ 212

[Close]

BLAST of Sed0013689 vs. ExPASy Swiss-Prot
Match: B0C1D3 (50S ribosomal protein L3 OS=Acaryochloris marina (strain MBIC 11017) OX=329726 GN=rplC PE=3 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 1.7e-63
Identity = 122/213 (57.28%), Postives = 160/213 (75.12%), Query Frame = 0


Query: 62  IGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNI-VTQLKTEATDGYSAVQVGYRRVRDRK 121
           +G++ TKLGM   F+  G+ +PVTVV  + G   VTQ+KT  TDGY+A+Q+GY    ++ 
Sbjct: 3   VGILGTKLGMTQVFDEAGRAIPVTVV--QAGPCPVTQIKTAQTDGYTAIQIGYGSTTEKA 62

Query: 122 LTKPELGHLEKAGAIPMRHLQEFRLPSVEGFEPNQRLDFNELFKEGDLVDVSGTTIGKGF 181
           LT+PELGHL+K+G+ P+RHLQE+RL  V  +E  Q +   +LF EG LVD+SGT+IG+GF
Sbjct: 63  LTRPELGHLKKSGSTPVRHLQEYRLADVSEYELGQSIS-ADLFSEGQLVDISGTSIGRGF 122

Query: 182 QGGIKRHNFKRGQMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMGGTKTKIRKLKIVK 241
            G  KRHNF+RG M HGSK+HRA GS GAGTTPGR+Y GK+M G+MG  K  IRKL +V+
Sbjct: 123 AGYQKRHNFRRGPMGHGSKNHRAPGSTGAGTTPGRIYPGKRMAGQMGNVKKTIRKLTVVR 182

Query: 242 IDDELNVVMIKGAVPGKPGNLLRIAPAKIVGKN 274
           +D E NV++IKG+VPGKPG LL I PA IVG++
Sbjct: 183 VDAERNVLLIKGSVPGKPGALLNIQPATIVGES 212

[Close]

BLAST of Sed0013689 vs. ExPASy TrEMBL
Match: A0A6J1DNV5 (50S ribosomal protein L3, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111022824 PE=3 SV=1)

HSP 1 Score: 467.2 bits (1201), Expect = 4.7e-128
Identity = 246/291 (84.54%), Postives = 263/291 (90.38%), Query Frame = 0


Query: 1   MSILSFPSPSTSTRNPI-----PSSSSPRLRSSFLAQPPKP------NLCLKFP---TSN 60
           M+++SF SPSTST +PI      SSSSPRLR+SFLA PP        +L L+FP   T+ 
Sbjct: 1   MAVVSFSSPSTSTSHPIFSNNPSSSSSPRLRTSFLALPPPKSHRNNFSLRLQFPRPSTAT 60

Query: 61  RTNNGGTVRMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQLKTEATDGY 120
           RTN+G ++ MSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQ+KTEATDGY
Sbjct: 61  RTNHGLSICMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQVKTEATDGY 120

Query: 121 SAVQVGYRRVRDRKLTKPELGHLEKAGAIPMRHLQEFRLPSVEGFEPNQRLDFNELFKEG 180
           SAVQVGYRRVRDRKLTKPELGHL+KAG IPMRHLQEFRL SV+GFEPNQR+DFNELFKEG
Sbjct: 121 SAVQVGYRRVRDRKLTKPELGHLQKAGVIPMRHLQEFRLQSVDGFEPNQRMDFNELFKEG 180

Query: 181 DLVDVSGTTIGKGFQGGIKRHNFKRGQMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGRM 240
           DLVDVSG TIGKGFQGGIKRHNFKRG M+HGSKSHRALGSIGAGTTPGRVYKGKKMPGRM
Sbjct: 181 DLVDVSGITIGKGFQGGIKRHNFKRGPMSHGSKSHRALGSIGAGTTPGRVYKGKKMPGRM 240

Query: 241 GGTKTKIRKLKIVKIDDELNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN 278
           GGTKTKIRKLKIVKIDD+LNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN
Sbjct: 241 GGTKTKIRKLKIVKIDDDLNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN 291

[Close]

BLAST of Sed0013689 vs. ExPASy TrEMBL
Match: A0A6J1KIF2 (50S ribosomal protein L3, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111494241 PE=3 SV=1)

HSP 1 Score: 459.5 bits (1181), Expect = 9.7e-126
Identity = 248/290 (85.52%), Postives = 257/290 (88.62%), Query Frame = 0


Query: 1   MSILSFPSPSTSTRNPI------PSSSSPRLRSSFLAQPPK----PNLCLKFP---TSNR 60
           MS + F S STS R+PI       SSSS RLR+SFLA P K     NL L+FP   T+ R
Sbjct: 1   MSAIPFSSASTSIRHPIFTNNASSSSSSLRLRTSFLALPLKSHHNSNLRLQFPAQRTTRR 60

Query: 61  TNNGGTVRMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQLKTEATDGYS 120
           TNNG  V MSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQ+KTEATDGYS
Sbjct: 61  TNNGVPVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQVKTEATDGYS 120

Query: 121 AVQVGYRRVRDRKLTKPELGHLEKAGAIPMRHLQEFRLPSVEGFEPNQRLDFNELFKEGD 180
           AVQVGYRRVRDRKLTKPELGHLEKAGAIPMRHLQEFRL +V+GFEPNQRL FNELFKEGD
Sbjct: 121 AVQVGYRRVRDRKLTKPELGHLEKAGAIPMRHLQEFRLVNVDGFEPNQRLVFNELFKEGD 180

Query: 181 LVDVSGTTIGKGFQGGIKRHNFKRGQMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMG 240
           LVDVSG TIGKGFQGGIKRHNFKRG MTHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMG
Sbjct: 181 LVDVSGITIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMG 240

Query: 241 GTKTKIRKLKIVKIDDELNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN 278
           GTK KIRKLKIVK+DDELNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN
Sbjct: 241 GTKRKIRKLKIVKVDDELNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN 290

[Close]

BLAST of Sed0013689 vs. ExPASy TrEMBL
Match: A0A6J1HNL2 (50S ribosomal protein L3, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111464551 PE=3 SV=1)

HSP 1 Score: 457.6 bits (1176), Expect = 3.7e-125
Identity = 247/290 (85.17%), Postives = 256/290 (88.28%), Query Frame = 0


Query: 1   MSILSFPSPSTSTRNPI------PSSSSPRLRSSFLAQPPK----PNLCLKFP---TSNR 60
           MS + F S STS R+PI       SSSS RLR+SFLA P K     NL L+FP   T+  
Sbjct: 1   MSAIPFSSASTSIRHPIFTNNASSSSSSLRLRTSFLALPLKSHHNSNLRLQFPAQRTTRH 60

Query: 61  TNNGGTVRMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQLKTEATDGYS 120
           TNNG  V MSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQ+KTEATDGYS
Sbjct: 61  TNNGVPVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQVKTEATDGYS 120

Query: 121 AVQVGYRRVRDRKLTKPELGHLEKAGAIPMRHLQEFRLPSVEGFEPNQRLDFNELFKEGD 180
           AVQVGYRRVRDRKLTKPELGHLEKAGAIPMRHLQEFRL +V+GFEPNQRL FNELFKEGD
Sbjct: 121 AVQVGYRRVRDRKLTKPELGHLEKAGAIPMRHLQEFRLVNVDGFEPNQRLVFNELFKEGD 180

Query: 181 LVDVSGTTIGKGFQGGIKRHNFKRGQMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMG 240
           LVDVSG TIGKGFQGGIKRHNFKRG MTHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMG
Sbjct: 181 LVDVSGITIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMG 240

Query: 241 GTKTKIRKLKIVKIDDELNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN 278
           GTK KIRKLKIVK+DDELNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN
Sbjct: 241 GTKRKIRKLKIVKVDDELNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN 290

[Close]

BLAST of Sed0013689 vs. ExPASy TrEMBL
Match: A0A6J1KXN5 (50S ribosomal protein L3, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111499138 PE=3 SV=1)

HSP 1 Score: 453.0 bits (1164), Expect = 9.1e-124
Identity = 243/292 (83.22%), Postives = 259/292 (88.70%), Query Frame = 0


Query: 1   MSILSFPSPSTSTRNPI----PSSSSP----RLRSSFLAQPPKP----NLCLKFP---TS 60
           MS++S  S STS R+PI     SSSSP    +LR+SFLA P K     N+  +FP   T+
Sbjct: 1   MSVISISSASTSKRHPIFTNNASSSSPSSSLKLRTSFLALPLKSHRNNNVRFQFPRPRTT 60

Query: 61  NRTNNGGTVRMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQLKTEATDG 120
            R N+G +V MSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQ+KTEATDG
Sbjct: 61  RRPNDGLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQIKTEATDG 120

Query: 121 YSAVQVGYRRVRDRKLTKPELGHLEKAGAIPMRHLQEFRLPSVEGFEPNQRLDFNELFKE 180
           YSAVQVGYRRVRDRKLTKPE+GHL+KAGAIPMRHLQEFRL S++GFEPNQRL FNELFKE
Sbjct: 121 YSAVQVGYRRVRDRKLTKPEMGHLQKAGAIPMRHLQEFRLESIDGFEPNQRLVFNELFKE 180

Query: 181 GDLVDVSGTTIGKGFQGGIKRHNFKRGQMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGR 240
           GDLVDVSGTTIGKGFQGGIKRHNFKRG MTHGSKSHRALGSIGAGTTPGRVYKGKKMPGR
Sbjct: 181 GDLVDVSGTTIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGR 240

Query: 241 MGGTKTKIRKLKIVKIDDELNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN 278
           MGGTK KIRKLKIVKIDD+LNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN
Sbjct: 241 MGGTKRKIRKLKIVKIDDDLNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN 292

[Close]

BLAST of Sed0013689 vs. ExPASy TrEMBL
Match: A0A6J1H630 (50S ribosomal protein L3, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111460446 PE=3 SV=1)

HSP 1 Score: 452.2 bits (1162), Expect = 1.5e-123
Identity = 243/292 (83.22%), Postives = 258/292 (88.36%), Query Frame = 0


Query: 1   MSILSFPSPSTSTRNPI----PSSSSP----RLRSSFLAQPPKP----NLCLKFP---TS 60
           MS++S    STS R+PI     SSSSP    +LR+SFLA P K     NL  +FP   T+
Sbjct: 1   MSVISISLASTSNRHPIFTNNASSSSPSSSLKLRTSFLALPLKSHRNNNLRFQFPRPRTT 60

Query: 61  NRTNNGGTVRMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQLKTEATDG 120
            R N+G +V MSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQ+KTEATDG
Sbjct: 61  RRPNDGLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQIKTEATDG 120

Query: 121 YSAVQVGYRRVRDRKLTKPELGHLEKAGAIPMRHLQEFRLPSVEGFEPNQRLDFNELFKE 180
           YSAVQVGYRRVRDRKLTKPE+GHL+KAGAIPMRHLQEFRL S++GFEPNQRL FNELFKE
Sbjct: 121 YSAVQVGYRRVRDRKLTKPEMGHLQKAGAIPMRHLQEFRLESIDGFEPNQRLVFNELFKE 180

Query: 181 GDLVDVSGTTIGKGFQGGIKRHNFKRGQMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGR 240
           GDLVDVSGTTIGKGFQGGIKRHNFKRG MTHGSKSHRALGSIGAGTTPGRVYKGKKMPGR
Sbjct: 181 GDLVDVSGTTIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGR 240

Query: 241 MGGTKTKIRKLKIVKIDDELNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN 278
           MGGTK KIRKLKIVKIDD+LNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN
Sbjct: 241 MGGTKRKIRKLKIVKIDDDLNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN 292

[Close]

BLAST of Sed0013689 vs. TAIR 10
Match: AT2G43030.1 (Ribosomal protein L3 family protein )

HSP 1 Score: 394.8 bits (1013), Expect = 5.7e-110
Identity = 208/277 (75.09%), Postives = 232/277 (83.75%), Query Frame = 0


Query: 1   MSILSFPSPSTSTRNPIPSSSSPRLRSSFLAQPPKPNLCLKFPTSNRTNNGGTVRMSMEA 60
           M+++SFPS    T     + SS     +FL   P  +  L   +S +T     V  SMEA
Sbjct: 5   MAVVSFPSLLNKT-----TLSSSLFTPTFL---PAKSSSLLIKSSPKTR--FVVSSSMEA 64

Query: 61  GIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQLKTEATDGYSAVQVGYRRVRDRK 120
           GIGVM +KLGMMSFFE DG VVPVTVVGF+EGNIVTQ+KT ATDGY AVQ+GYRRVRD+K
Sbjct: 65  GIGVMGSKLGMMSFFEEDGTVVPVTVVGFREGNIVTQIKTLATDGYDAVQIGYRRVRDKK 124

Query: 121 LTKPELGHLEKAGAIPMRHLQEFRLPSVEGFEPNQRLDFNELFKEGDLVDVSGTTIGKGF 180
           LTKPE GHL+KAG IPMRHLQEFRL ++EGFEPNQ+L F+E+FKEGDLVDV+GTTIGKGF
Sbjct: 125 LTKPETGHLQKAGTIPMRHLQEFRLTNIEGFEPNQKLVFDEIFKEGDLVDVAGTTIGKGF 184

Query: 181 QGGIKRHNFKRGQMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMGGTKTKIRKLKIVK 240
           QGGIKRH+FKRGQMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMGGT+TKIRKLKIVK
Sbjct: 185 QGGIKRHHFKRGQMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMGGTRTKIRKLKIVK 244

Query: 241 IDDELNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN 278
           +D ELNVVMIKGA+PGKPGNLLRI PAKIVG NIPKN
Sbjct: 245 VDKELNVVMIKGALPGKPGNLLRITPAKIVGVNIPKN 271

[Close]

BLAST of Sed0013689 vs. TAIR 10
Match: AT3G17465.1 (ribosomal protein L3 plastid )

HSP 1 Score: 132.1 bits (331), Expect = 6.8e-31
Identity = 77/206 (37.38%), Postives = 118/206 (57.28%), Query Frame = 0


Query: 63  GVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQLKTEATDGYSAVQVGYRRVRDRKLT 122
           G++A K GM + ++  GK +P++++ + + NIV+Q+KT   +G  A+Q+G  + + + L+
Sbjct: 78  GIIAVKCGMTALWDKWGKRIPISIL-WVDDNIVSQVKTVEKEGIFALQIGCGQKKPKHLS 137

Query: 123 KPELGHLEKAGAIPMRHLQEFRLPSVEGFEPNQRLDFNELFKEGDLVDVSGTTIGKGFQG 182
           K  +GH    G    R L+EF +           L     F  G  VDV+G T GKGFQG
Sbjct: 138 KAVVGHFRAQGVPLKRKLREFPVTEDALLPVGTSLGVRH-FVPGQYVDVTGITRGKGFQG 197

Query: 183 GIKRHNFKRGQMTHG-SKSHRALGSIGAGTTPGRVYKGKKMPGRMGGTKTKIRKLKIVKI 242
            +KRH F     +HG S SHR+ GS G    PG+V+KG+KM GRMG  +  ++ + + KI
Sbjct: 198 CMKRHGFSGMPASHGASLSHRSGGSTGQRDAPGKVFKGRKMAGRMGADQRTVKNVWVYKI 257

Query: 243 DDELNVVMIKGAVPGKPGNLLRIAPA 268
           D   N++ ++G VPG  GN + I  A
Sbjct: 258 DPARNLMWVRGQVPGAEGNFVFIKDA 281

The following BLAST results are available for this feature:

BLAST of Sed0013689 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022155788.1	9.6e-128	84.54	50S ribosomal protein L3, chloroplastic [Momordica charantia]	[more]
XP_023515139.1	1.2e-125	85.52	50S ribosomal protein L3, chloroplastic-like [Cucurbita pepo subsp. pepo] >KAG70...	[more]
XP_022999904.1	2.0e-125	85.52	50S ribosomal protein L3, chloroplastic-like [Cucurbita maxima]	[more]
XP_022964564.1	7.6e-125	85.17	50S ribosomal protein L3, chloroplastic-like [Cucurbita moschata]	[more]
KAG6574805.1	6.4e-124	83.56	50S ribosomal protein L3, chloroplastic, partial [Cucurbita argyrosperma subsp. ...	[more]

BLAST of Sed0013689 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O80360	4.5e-112	81.03	50S ribosomal protein L3, chloroplastic (Fragment) OS=Nicotiana tabacum OX=4097 ...	[more]
Q9SKX4	8.0e-109	75.09	50S ribosomal protein L3-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL...	[more]
P82191	3.7e-106	74.45	50S ribosomal protein L3, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL3 PE=...	[more]
B1XJT9	5.4e-65	58.69	50S ribosomal protein L3 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR...	[more]
B0C1D3	1.7e-63	57.28	50S ribosomal protein L3 OS=Acaryochloris marina (strain MBIC 11017) OX=329726 G...	[more]

BLAST of Sed0013689 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DNV5	4.7e-128	84.54	50S ribosomal protein L3, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111...	[more]
A0A6J1KIF2	9.7e-126	85.52	50S ribosomal protein L3, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]
A0A6J1HNL2	3.7e-125	85.17	50S ribosomal protein L3, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A6J1KXN5	9.1e-124	83.22	50S ribosomal protein L3, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]
A0A6J1H630	1.5e-123	83.22	50S ribosomal protein L3, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LO...	[more]

BLAST of Sed0013689 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G43030.1	5.7e-110	75.09	Ribosomal protein L3 family protein	[more]
AT3G17465.1	6.8e-31	37.38	ribosomal protein L3 plastid	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019927	Ribosomal protein L3, bacterial/organelle-type	TIGRFAM	TIGR03625	TIGR03625	coord: 63..264 e-value: 4.9E-74 score: 246.5
IPR019927	Ribosomal protein L3, bacterial/organelle-type	PANTHER	PTHR11229	50S RIBOSOMAL PROTEIN L3	coord: 56..276
IPR019927	Ribosomal protein L3, bacterial/organelle-type	HAMAP	MF_01325_B	Ribosomal_L3_B	coord: 61..268 score: 35.596977
None	No IPR available	GENE3D	2.40.30.10	Translation factors	coord: 189..269 e-value: 4.8E-21 score: 76.9
None	No IPR available	GENE3D	3.30.160.810		coord: 94..153 e-value: 1.9E-19 score: 71.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..36
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 195..228
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..28
None	No IPR available	PANTHER	PTHR11229:SF16	50S RIBOSOMAL PROTEIN L3-1, CHLOROPLASTIC	coord: 56..276
IPR000597	Ribosomal protein L3	PFAM	PF00297	Ribosomal_L3	coord: 156..243 e-value: 1.1E-15 score: 57.5
IPR019926	Ribosomal protein L3, conserved site	PROSITE	PS00474	RIBOSOMAL_L3	coord: 163..186
IPR009000	Translation protein, beta-barrel domain superfamily	SUPERFAMILY	50447	Translation proteins	coord: 62..273

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0013689.1	Sed0013689.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
biological_process	GO:0006011	UDP-glucose metabolic process
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0003983	UTP:glucose-1-phosphate uridylyltransferase activity