Sed0013623 (gene) Chayote v1

Overview
NameSed0013623
Typegene
OrganismSechium edule (Chayote v1)
DescriptionCCHC-type domain-containing protein
LocationLG13: 8204784 .. 8206612 (+)
RNA-Seq ExpressionSed0013623
SyntenySed0013623
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATCAGGCTCTCTTCGCCCAGATGATGGAGAACCTGGAACTAGGAGACCAAGAAGCTCAAGAAGTTTTTGAGCTTGAAGAAGAGGAGATCTCTGCGTATGAAGGAGAGCTAAACAATGTTGTTGCGTGAAAAGTGTTTTCACCAAATCAGGTGAGTTCCGACGTTTTTATAAAAGTTATTCCTAAAATATGGAATGTTGAGAATAAGATAGAGATTGAATCGGTGGGAGCCAATAAATTTATCTGTACTTTTGAGAACAAAATTATGATGGAAAGAGTTCTAATGGCAAGTCCATGGATTTATAATGAAGCTGTGATCTTGTTTGAAAGTATGGCGGGAGACAAGCGTGTTTCTAAAATGGAATTTGGTTATGGGGATTTCTGGATTAGACTTCACGATGTTCCTCCAGCGGGCCACACAGATAAGAGTGCAAGAAGATTGGGAAGTATGTTGGGGAGATTTAAAGCCTGGGAAGTGAAGAAGATAAAAGGAACAGAGGCAAGTTCTTGAGAATAAAAATTGCAATTGATGTTAGAATCCCATTAAGAAGGGCTCTGAAGTTGAAAAGTGGTGTAATGGCAGCTGAAAAATGGGTTCGGTTGTCTTATGAAAAGCTCTTGATTTTTTGTCGGGGGTGCGGAAGAATCGGCCATGGTGAAAACCAGTGTGATTTTGTGGTGATAGGGGAGGGCAACCATTTTCCTTTTGGAGTTGAGCTGCGTGAACCTGTGTCCCATACAGAGGAGATTGTGATGTTCCGCTGCTTTTTGGTATAAGAGGGAGGGGCAGGGGAAGAGGCAGAGGAGAGGGGATTCGTGGAGGTGGTGTTCGAGCAGAGGAGGAGGAATTTTCGATGGAGAAAAGGAGGGAGGAGGAGAGGCAGAGGGGAAAACCGTCGTCGAATATTCTAGCCGTTTCCGACTTGGCGGTGATAGAATCGGAAGGCAGAGAGGATTTTAAGGAAAAAATTTAGAAGATGTCTGGTTTTTCGGCTGAGGAAGGAAAGGTTTTTCGGGAAGTGGTAGGGGGATGAGACAAATAGTCAATTGATGAGCAGAGAAATTAAAATAGGGAAGGGACATGTGGCAGAAATTAATTGCGACAGGCTGGCTGGGAAGGGGAAAAAGAAATTGCTTGACCAGGGGACGAACGATTTACTCTTTGGGCCTTTTGAAGTTTGTTTCGGTCATAAAAGTGAGTCAGCTGATTATTTGATTGGGCCTAAAGTTGGGCCGATAAATGGGATTTTTATTAAAGAAGATATAGGTCAACAATTTTCTATGCTGGTTTCTGATGATCCAAAGCCAATTGGATATAGGGGCAGACATGGGCCCGATGAAAAGGAAAAAAGGGTTAACAGTTTTTCGGCAGGGCAGGAAGTTGATGTTGTTAGGCAGATTGTTGCTGAAAATAATGATAAATCGACATGGAGTCATATGGCCGAGAAAAGAGACGTTGTCAAGGTGCCAGAAGAGAGGGAGAGATGTAGAAATCCTAGTAGAAATGTTTCATCCAAGAATCTTATAGATGATGTATCTAAGATGGATATTGAGATCGAAAAAACAAGGGAATTGGACAAAGAAGTCGGTAGCAGTGGTGGTGGAAAAATTAAAAGCTCAATTTCAATTGTTAAATGGAAAAGGAAAGCAAGACTAGAGGGAATGACGAAGAAGCTACAAGCAAAGGATGTTGAGCAGAAAGAAAGGGAAGAGGCAGGCAAAAAACATGTTCTGGAGCTAACGGTGTCAATGAGATATCGGCGGAGACTGCGGAGCAGTCTCTCCGGACGCAATAAAAACTCTATGCTGGAATGCTTGGGGGCTTAA

mRNA sequence

ATGGATCAGGCTCTCTTCGCCCAGATGATGGAGAACCTGGAACTAGGAGACCAAGAAGCTCAAGAAGTTTTTGAGCTTGAAGAAGAGGAGATCTCTGCGTATGAAGGAGAGCTAAACAATGTTGTTGCTATGGCGGGAGACAAGCGTGTTTCTAAAATGGAATTTGGTTATGGGGATTTCTGGATTAGACTTCACGATGTTCCTCCAGCGGGCCACACAGATAAGAGTGCAAGAAGATTGGGAACTGAAAAATGGGTTCGGTTGTCTTATGAAAAGCTCTTGATTTTTTGTCGGGGGTGCGGAAGAATCGGCCATGGTGAAAACCAAGGAGATTGTGATGTTCCGCTGCTTTTTGGTATAAGAGGGAGGGGCAGGGGAAGAGGCAGAGGAGAGGGGATTCGTGGAGGTGGTGTTCGAGCAGAGGAGGAGGAATTTTCGATGGAGAAAAGGAGGGAGGAGGAGAGGCAGAGGGGAAAACCGTCGTCGAATATTCTAGCCGTTTCCGACTTGGCGGGGGATGAGACAAATAGTCAATTGATGAGCAGAGAAATTAAAATAGGGAAGGGACATGTGGCAGAAATTAATTGCGACAGGCTGGCTGGGAAGGGGAAAAAGAAATTGCTTGACCAGGGGACGAACGATTTACTCTTTGGGCCTTTTGAAGTTTGTTTCGGTCATAAAAGTGAGTCAGCTGATTATTTGATTGGGCCTAAAGTTGGGCCGATAAATGGGATTTTTATTAAAGAAGATATAGGTCAACAATTTTCTATGCTGGTTTCTGATGATCCAAAGCCAATTGGATATAGGGGCAGACATGGGCCCGATGAAAAGGAAAAAAGGGTTAACAGTTTTTCGGCAGGGCAGGAAGTTGATGTTGTTAGGCAGATTGTTGCTGAAAATAATGATAAATCGACATGGAGTCATATGGCCGAGAAAAGAGACGTTGTCAAGGTGCCAGAAGAGAGGGAGAGATGTAGAAATCCTAGTAGAAATGTTTCATCCAAGAATCTTATAGATGATGTATCTAAGATGGATATTGAGATCGAAAAAACAAGGGAATTGGACAAAGAAGTCGGTAGCAGTGGTGGTGGAAAAATTAAAAGCTCAATTTCAATTGTTAAATGGAAAAGGAAAGCAAGACTAGAGGGAATGACGAAGAAGCTACAAGCAAAGGATGTTGAGCAGAAAGAAAGGGAAGAGGCAGGCAAAAAACATGTTCTGGAGCTAACGGTGTCAATGAGATATCGGCGGAGACTGCGGAGCAGTCTCTCCGGACGCAATAAAAACTCTATGCTGGAATGCTTGGGGGCTTAA

Coding sequence (CDS)

ATGGATCAGGCTCTCTTCGCCCAGATGATGGAGAACCTGGAACTAGGAGACCAAGAAGCTCAAGAAGTTTTTGAGCTTGAAGAAGAGGAGATCTCTGCGTATGAAGGAGAGCTAAACAATGTTGTTGCTATGGCGGGAGACAAGCGTGTTTCTAAAATGGAATTTGGTTATGGGGATTTCTGGATTAGACTTCACGATGTTCCTCCAGCGGGCCACACAGATAAGAGTGCAAGAAGATTGGGAACTGAAAAATGGGTTCGGTTGTCTTATGAAAAGCTCTTGATTTTTTGTCGGGGGTGCGGAAGAATCGGCCATGGTGAAAACCAAGGAGATTGTGATGTTCCGCTGCTTTTTGGTATAAGAGGGAGGGGCAGGGGAAGAGGCAGAGGAGAGGGGATTCGTGGAGGTGGTGTTCGAGCAGAGGAGGAGGAATTTTCGATGGAGAAAAGGAGGGAGGAGGAGAGGCAGAGGGGAAAACCGTCGTCGAATATTCTAGCCGTTTCCGACTTGGCGGGGGATGAGACAAATAGTCAATTGATGAGCAGAGAAATTAAAATAGGGAAGGGACATGTGGCAGAAATTAATTGCGACAGGCTGGCTGGGAAGGGGAAAAAGAAATTGCTTGACCAGGGGACGAACGATTTACTCTTTGGGCCTTTTGAAGTTTGTTTCGGTCATAAAAGTGAGTCAGCTGATTATTTGATTGGGCCTAAAGTTGGGCCGATAAATGGGATTTTTATTAAAGAAGATATAGGTCAACAATTTTCTATGCTGGTTTCTGATGATCCAAAGCCAATTGGATATAGGGGCAGACATGGGCCCGATGAAAAGGAAAAAAGGGTTAACAGTTTTTCGGCAGGGCAGGAAGTTGATGTTGTTAGGCAGATTGTTGCTGAAAATAATGATAAATCGACATGGAGTCATATGGCCGAGAAAAGAGACGTTGTCAAGGTGCCAGAAGAGAGGGAGAGATGTAGAAATCCTAGTAGAAATGTTTCATCCAAGAATCTTATAGATGATGTATCTAAGATGGATATTGAGATCGAAAAAACAAGGGAATTGGACAAAGAAGTCGGTAGCAGTGGTGGTGGAAAAATTAAAAGCTCAATTTCAATTGTTAAATGGAAAAGGAAAGCAAGACTAGAGGGAATGACGAAGAAGCTACAAGCAAAGGATGTTGAGCAGAAAGAAAGGGAAGAGGCAGGCAAAAAACATGTTCTGGAGCTAACGGTGTCAATGAGATATCGGCGGAGACTGCGGAGCAGTCTCTCCGGACGCAATAAAAACTCTATGCTGGAATGCTTGGGGGCTTAA

Protein sequence

MDQALFAQMMENLELGDQEAQEVFELEEEEISAYEGELNNVVAMAGDKRVSKMEFGYGDFWIRLHDVPPAGHTDKSARRLGTEKWVRLSYEKLLIFCRGCGRIGHGENQGDCDVPLLFGIRGRGRGRGRGEGIRGGGVRAEEEEFSMEKRREEERQRGKPSSNILAVSDLAGDETNSQLMSREIKIGKGHVAEINCDRLAGKGKKKLLDQGTNDLLFGPFEVCFGHKSESADYLIGPKVGPINGIFIKEDIGQQFSMLVSDDPKPIGYRGRHGPDEKEKRVNSFSAGQEVDVVRQIVAENNDKSTWSHMAEKRDVVKVPEERERCRNPSRNVSSKNLIDDVSKMDIEIEKTRELDKEVGSSGGGKIKSSISIVKWKRKARLEGMTKKLQAKDVEQKEREEAGKKHVLELTVSMRYRRRLRSSLSGRNKNSMLECLGA
Homology
[Close]
BLAST of Sed0013623 vs. NCBI nr
Match: MBA0847410.1 (hypothetical protein [Gossypium schwendimanii])

HSP 1 Score: 57.4 bits (137), Expect = 3.6e-04
Identity = 26/65 (40.00%), Postives = 41/65 (63.08%), Query Frame = 0 

Query: 50  VSKMEFGYGDFWIRLHDVPPAGHTDKSARR----LGTEK--WVRLSYEKLLIFCRGCGRI 109
           +S +   Y +FW+++HD+ P G   ++ R+    LGT +  + R  YEKL +FC  CG++
Sbjct: 106 LSMLPLIYAEFWVQIHDL-PLGLMSEAMRKKKIVLGTSRTIYARFQYEKLSLFCFLCGKL 165

[Close]
BLAST of Sed0013623 vs. NCBI nr
Match: GEV60055.1 (reverse transcriptase domain-containing protein [Tanacetum cinerariifolium])

HSP 1 Score: 57.0 bits (136), Expect = 4.7e-04
Identity = 28/74 (37.84%), Postives = 39/74 (52.70%), Query Frame = 0 

Query: 47  DKRVSKMEFGYGDFWIRLHDVPPAGHTDKSARRL--------------GTEKWVRLSYEK 106
           +K ++++EF  G+FWI++HD+P    + + A  L              GTE WV L YE 
Sbjct: 3   NKTLNELEFNRGEFWIQVHDLPLGMLSSEYATELAKSLGKLIELDCGGGTESWVSLKYEC 62

[Close]
BLAST of Sed0013623 vs. NCBI nr
Match: TXG69340.1 (hypothetical protein EZV62_004275 [Acer yangbiense])

HSP 1 Score: 56.2 bits (134), Expect = 8.1e-04
Identity = 28/66 (42.42%), Postives = 40/66 (60.61%), Query Frame = 0 

Query: 46  GDKRVSKMEFGYGDFWIRLHDVPPAGHTDKSAR--RLG-TEK--WVRLSYEKLLIFCRGC 105
           G   +SK+ F   DFW+++HD+P      ++ +  +LG T+K   V L YE+L  FC  C
Sbjct: 113 GSGNISKLGFNKVDFWVQIHDIPLLCMNRRTVKWLKLGKTDKVTMVSLKYERLPDFCYAC 172

Query: 106 GRIGHG 107
           GRIGHG
Sbjct: 173 GRIGHG 178

[Close]
BLAST of Sed0013623 vs. ExPASy TrEMBL
Match: A0A7J9KLW8 (Uncharacterized protein (Fragment) OS=Gossypium schwendimanii OX=34291 GN=Goshw_017556 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.8e-04
Identity = 26/65 (40.00%), Postives = 41/65 (63.08%), Query Frame = 0 

Query: 50  VSKMEFGYGDFWIRLHDVPPAGHTDKSARR----LGTEK--WVRLSYEKLLIFCRGCGRI 109
           +S +   Y +FW+++HD+ P G   ++ R+    LGT +  + R  YEKL +FC  CG++
Sbjct: 106 LSMLPLIYAEFWVQIHDL-PLGLMSEAMRKKKIVLGTSRTIYARFQYEKLSLFCFLCGKL 165

[Close]
BLAST of Sed0013623 vs. ExPASy TrEMBL
Match: A0A5C7IJ96 (CCHC-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_004275 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 3.9e-04
Identity = 28/66 (42.42%), Postives = 40/66 (60.61%), Query Frame = 0 

Query: 46  GDKRVSKMEFGYGDFWIRLHDVPPAGHTDKSAR--RLG-TEK--WVRLSYEKLLIFCRGC 105
           G   +SK+ F   DFW+++HD+P      ++ +  +LG T+K   V L YE+L  FC  C
Sbjct: 113 GSGNISKLGFNKVDFWVQIHDIPLLCMNRRTVKWLKLGKTDKVTMVSLKYERLPDFCYAC 172

Query: 106 GRIGHG 107
           GRIGHG
Sbjct: 173 GRIGHG 178

The following BLAST results are available for this feature:
BLAST of Sed0013623 vs. NCBI nr
Match NameE-valueIdentityDescription
MBA0847410.13.6e-0440.00hypothetical protein [Gossypium schwendimanii][more]
GEV60055.14.7e-0437.84reverse transcriptase domain-containing protein [Tanacetum cinerariifolium][more]
TXG69340.18.1e-0442.42hypothetical protein EZV62_004275 [Acer yangbiense][more]
BLAST of Sed0013623 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Sed0013623 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A7J9KLW81.8e-0440.00Uncharacterized protein (Fragment) OS=Gossypium schwendimanii OX=34291 GN=Goshw_... [more]
A0A5C7IJ963.9e-0442.42CCHC-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_00427... [more]
BLAST of Sed0013623 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025836Zinc knuckle CX2CX4HX4CPFAMPF14392zf-CCHC_4coord: 81..113
e-value: 9.0E-7
score: 28.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 265..284
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 262..284
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 127..162
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 127..159

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0013623.1Sed0013623.1mRNA