Sed0013558 (gene) Chayote v1

Overview


Name	Sed0013558
Type	gene
Organism	Sechium edule (Chayote v1)
Description	photosystem II core complex proteins psbY, chloroplastic
Location	LG03: 42413805 .. 42414413 (+)
RNA-Seq Expression	Sed0013558
Synteny	Sed0013558

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGCTTCCATGGCTACAATGGCAGTGCTCAGTGTCAAGTGCACAACCATCAACCCCACCAAAAACCACAACATCCCAAAGCCAATCCCCAAACCAATCTCCCTCCTCTCCCTCCACAACCTTCCTAGAGGCCTAATCTCATCAAAAGCTAATGAAAATTCCAACTTATCAACCTTCCTCTCCGGCACCGCCCTCGCCGGAGCAGTCTTCTCAACCTTGAGCTCATCGGACCCGGCCTTTGCAGCCCAACAGATTGCAGAGATAGCAGCCGACGGGGACAACCGGGGCTTAGCCCTTTTGCTGCCCCTTATTCCAGCCATAGCATGGGTTCTGTTCAACATACTTCAGCCAGCACTCAACCAGATCAACAAAATGCGCAGTGACAAAGGGGTGATAATTGGCTTGGGATTGGGGGGCTTAACTGCATCAGGGTTCATGAACGCACCTGATGCTTCTGCTAGTGAGATCGCCATGGTTGCCGCCGATGCTTCAAGTGATGGCCGGGGGCAGCTTCTGCTGTTTGTCGTCGCACCCGCCATTCTTTGGGTGTTGTACAACATTCTACAGCCAGCTTTGAATCAGATCAACAGGATGAGATCCGACTGA

mRNA sequence

ATGGCAGCTTCCATGGCTACAATGGCAGTGCTCAGTGTCAAGTGCACAACCATCAACCCCACCAAAAACCACAACATCCCAAAGCCAATCCCCAAACCAATCTCCCTCCTCTCCCTCCACAACCTTCCTAGAGGCCTAATCTCATCAAAAGCTAATGAAAATTCCAACTTATCAACCTTCCTCTCCGGCACCGCCCTCGCCGGAGCAGTCTTCTCAACCTTGAGCTCATCGGACCCGGCCTTTGCAGCCCAACAGATTGCAGAGATAGCAGCCGACGGGGACAACCGGGGCTTAGCCCTTTTGCTGCCCCTTATTCCAGCCATAGCATGGGTTCTGTTCAACATACTTCAGCCAGCACTCAACCAGATCAACAAAATGCGCAGTGACAAAGGGGTGATAATTGGCTTGGGATTGGGGGGCTTAACTGCATCAGGGTTCATGAACGCACCTGATGCTTCTGCTAGTGAGATCGCCATGGTTGCCGCCGATGCTTCAAGTGATGGCCGGGGGCAGCTTCTGCTGTTTGTCGTCGCACCCGCCATTCTTTGGGTGTTGTACAACATTCTACAGCCAGCTTTGAATCAGATCAACAGGATGAGATCCGACTGA

Coding sequence (CDS)

ATGGCAGCTTCCATGGCTACAATGGCAGTGCTCAGTGTCAAGTGCACAACCATCAACCCCACCAAAAACCACAACATCCCAAAGCCAATCCCCAAACCAATCTCCCTCCTCTCCCTCCACAACCTTCCTAGAGGCCTAATCTCATCAAAAGCTAATGAAAATTCCAACTTATCAACCTTCCTCTCCGGCACCGCCCTCGCCGGAGCAGTCTTCTCAACCTTGAGCTCATCGGACCCGGCCTTTGCAGCCCAACAGATTGCAGAGATAGCAGCCGACGGGGACAACCGGGGCTTAGCCCTTTTGCTGCCCCTTATTCCAGCCATAGCATGGGTTCTGTTCAACATACTTCAGCCAGCACTCAACCAGATCAACAAAATGCGCAGTGACAAAGGGGTGATAATTGGCTTGGGATTGGGGGGCTTAACTGCATCAGGGTTCATGAACGCACCTGATGCTTCTGCTAGTGAGATCGCCATGGTTGCCGCCGATGCTTCAAGTGATGGCCGGGGGCAGCTTCTGCTGTTTGTCGTCGCACCCGCCATTCTTTGGGTGTTGTACAACATTCTACAGCCAGCTTTGAATCAGATCAACAGGATGAGATCCGACTGA

Protein sequence

MAASMATMAVLSVKCTTINPTKNHNIPKPIPKPISLLSLHNLPRGLISSKANENSNLSTFLSGTALAGAVFSTLSSSDPAFAAQQIAEIAADGDNRGLALLLPLIPAIAWVLFNILQPALNQINKMRSDKGVIIGLGLGGLTASGFMNAPDASASEIAMVAADASSDGRGQLLLFVVAPAILWVLYNILQPALNQINRMRSD

Homology

[Close]

BLAST of Sed0013558 vs. NCBI nr
Match: XP_038886078.1 (LOW QUALITY PROTEIN: photosystem II core complex proteins psbY, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 344.0 bits (881), Expect = 9.0e-91
Identity = 182/202 (90.10%), Postives = 193/202 (95.54%), Query Frame = 0


Query: 1   MAASMATMAVLSVKCTTINPTKNHNIPKPIPKPISLLSLHNLPRGLISSKANENSNLSTF 60
           MAA+MATMAVLSVKCT+IN TKNHN PKPIPKPISLLSL NLP+GL+SSK+N+NSNLST 
Sbjct: 53  MAATMATMAVLSVKCTSINSTKNHNTPKPIPKPISLLSLQNLPKGLVSSKSNQNSNLSTI 112

Query: 61  LSGTALAGAVFSTLSSSDPAFAAQQIAEIAADGDNRGLALLLPLIPAIAWVLFNILQPAL 120
           LS TA+AGAVFSTLSSSDPAFAAQQIAEIAADGDNRGLALLLPLIPAIAWVLFNILQPAL
Sbjct: 113 LSSTAIAGAVFSTLSSSDPAFAAQQIAEIAADGDNRGLALLLPLIPAIAWVLFNILQPAL 172

Query: 121 NQINKMRSDKGVIIGLGLGGLTASGFMNAPDASASEIAMVAADASSDGRGQLLLFVVAPA 180
           NQINKMRSDKGVIIGLGLGGLTASGFM APDASASEIAM+A  +SSD RGQLLLFVVAPA
Sbjct: 173 NQINKMRSDKGVIIGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPA 232

Query: 181 ILWVLYNILQPALNQINRMRSD 203
           ILWVLYNILQPALNQ+NRMRS+
Sbjct: 233 ILWVLYNILQPALNQLNRMRSE 254

[Close]

BLAST of Sed0013558 vs. NCBI nr
Match: XP_004142959.3 (photosystem II core complex proteins psbY, chloroplastic [Cucumis sativus])

HSP 1 Score: 333.2 bits (853), Expect = 1.6e-87
Identity = 177/202 (87.62%), Postives = 190/202 (94.06%), Query Frame = 0


Query: 1   MAASMATMAVLSVKCTTINPTKNHNIPKPIPKPISLLSLHNLPRGLISSKANENSNLSTF 60
           MAA+MATMAVLSVKCT+IN TK HN  K IPKPISLLSL NLP+GLISSK+N+NSNLSTF
Sbjct: 52  MAATMATMAVLSVKCTSINSTKTHNTQKIIPKPISLLSLQNLPKGLISSKSNQNSNLSTF 111

Query: 61  LSGTALAGAVFSTLSSSDPAFAAQQIAEIAADGDNRGLALLLPLIPAIAWVLFNILQPAL 120
           LS TA+AGAVF+TL SSDPAFAAQQIAEIAADGDNRGLALLLPLIPA+AWVLFNILQPAL
Sbjct: 112 LSSTAIAGAVFATLGSSDPAFAAQQIAEIAADGDNRGLALLLPLIPAVAWVLFNILQPAL 171

Query: 121 NQINKMRSDKGVIIGLGLGGLTASGFMNAPDASASEIAMVAADASSDGRGQLLLFVVAPA 180
           NQIN+MRSDKGVIIGLGLGGLTASGFM APDASASEIAM+A  +SSD RGQLLLFVVAPA
Sbjct: 172 NQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPA 231

Query: 181 ILWVLYNILQPALNQINRMRSD 203
           ILWVLYNILQPALNQ+NRMRS+
Sbjct: 232 ILWVLYNILQPALNQLNRMRSE 253

[Close]

BLAST of Sed0013558 vs. NCBI nr
Match: KGN62604.2 (hypothetical protein Csa_018753 [Cucumis sativus])

HSP 1 Score: 333.2 bits (853), Expect = 1.6e-87
Identity = 177/202 (87.62%), Postives = 190/202 (94.06%), Query Frame = 0


Query: 1   MAASMATMAVLSVKCTTINPTKNHNIPKPIPKPISLLSLHNLPRGLISSKANENSNLSTF 60
           MAA+MATMAVLSVKCT+IN TK HN  K IPKPISLLSL NLP+GLISSK+N+NSNLSTF
Sbjct: 1   MAATMATMAVLSVKCTSINSTKTHNTQKIIPKPISLLSLQNLPKGLISSKSNQNSNLSTF 60

Query: 61  LSGTALAGAVFSTLSSSDPAFAAQQIAEIAADGDNRGLALLLPLIPAIAWVLFNILQPAL 120
           LS TA+AGAVF+TL SSDPAFAAQQIAEIAADGDNRGLALLLPLIPA+AWVLFNILQPAL
Sbjct: 61  LSSTAIAGAVFATLGSSDPAFAAQQIAEIAADGDNRGLALLLPLIPAVAWVLFNILQPAL 120

Query: 121 NQINKMRSDKGVIIGLGLGGLTASGFMNAPDASASEIAMVAADASSDGRGQLLLFVVAPA 180
           NQIN+MRSDKGVIIGLGLGGLTASGFM APDASASEIAM+A  +SSD RGQLLLFVVAPA
Sbjct: 121 NQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPA 180

Query: 181 ILWVLYNILQPALNQINRMRSD 203
           ILWVLYNILQPALNQ+NRMRS+
Sbjct: 181 ILWVLYNILQPALNQLNRMRSE 202

[Close]

BLAST of Sed0013558 vs. NCBI nr
Match: XP_008444395.1 (PREDICTED: photosystem II core complex proteins psbY, chloroplastic [Cucumis melo] >KAA0061043.1 photosystem II core complex proteins psbY [Cucumis melo var. makuwa])

HSP 1 Score: 332.8 bits (852), Expect = 2.1e-87
Identity = 178/201 (88.56%), Postives = 189/201 (94.03%), Query Frame = 0


Query: 1   MAASMATMAVLSVKCTTINPTKNHNIPKPIPKPISLLSLHNLPRGLISSKANENSNLSTF 60
           MAA+MATMAVLSVKCT+IN TK HN  K IPKPISLLSL NLP+GLISSK+NENSNLSTF
Sbjct: 52  MAATMATMAVLSVKCTSINSTKTHNTQKIIPKPISLLSLQNLPKGLISSKSNENSNLSTF 111

Query: 61  LSGTALAGAVFSTLSSSDPAFAAQQIAEIAADGDNRGLALLLPLIPAIAWVLFNILQPAL 120
           LS TA+AGAVF+TL +SDPAFAAQQIAEIAADGDNRGLALLLPLIPAIAWVLFNILQPAL
Sbjct: 112 LSSTAIAGAVFATLGTSDPAFAAQQIAEIAADGDNRGLALLLPLIPAIAWVLFNILQPAL 171

Query: 121 NQINKMRSDKGVIIGLGLGGLTASGFMNAPDASASEIAMVAADASSDGRGQLLLFVVAPA 180
           NQIN+MRSDKGVIIGLGLGGLTASGFM APDASASEIAM+A  +SSD RGQLLLFVVAPA
Sbjct: 172 NQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPA 231

Query: 181 ILWVLYNILQPALNQINRMRS 202
           ILWVLYNILQPALNQ+NRMRS
Sbjct: 232 ILWVLYNILQPALNQLNRMRS 252

[Close]

BLAST of Sed0013558 vs. NCBI nr
Match: KAG6598253.1 (Photosystem II core complex proteins psbY, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 331.6 bits (849), Expect = 4.6e-87
Identity = 175/202 (86.63%), Postives = 190/202 (94.06%), Query Frame = 0


Query: 1   MAASMATMAVLSVKCTTINPTKNHNIPKPIPKPISLLSLHNLPRGLISSKANENSNLSTF 60
           MAA+MATMAVLSVKCT+IN T+NHN PK IPKPISLLSL NLP+GLISSK+NE+SNLS F
Sbjct: 1   MAATMATMAVLSVKCTSINSTRNHNTPKLIPKPISLLSLQNLPKGLISSKSNEHSNLSAF 60

Query: 61  LSGTALAGAVFSTLSSSDPAFAAQQIAEIAADGDNRGLALLLPLIPAIAWVLFNILQPAL 120
           LS TA+AGAVFS LSSSDPAFAAQQIA+IAADGDNRG+ALLLPLIPAIAWVLFNILQPAL
Sbjct: 61  LSSTAIAGAVFSALSSSDPAFAAQQIADIAADGDNRGIALLLPLIPAIAWVLFNILQPAL 120

Query: 121 NQINKMRSDKGVIIGLGLGGLTASGFMNAPDASASEIAMVAADASSDGRGQLLLFVVAPA 180
           NQIN+MRSDKGVIIGLGLGGLTASGFM APDASASE+AM+A  +SSD RGQLLLFVV PA
Sbjct: 121 NQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASELAMIADASSSDSRGQLLLFVVTPA 180

Query: 181 ILWVLYNILQPALNQINRMRSD 203
           ILWVLYNILQPALNQ+NRMRS+
Sbjct: 181 ILWVLYNILQPALNQLNRMRSE 202

[Close]

BLAST of Sed0013558 vs. ExPASy Swiss-Prot
Match: P80470 (Photosystem II core complex proteins psbY, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSBY PE=1 SV=2)

HSP 1 Score: 192.2 bits (487), Expect = 5.7e-48
Identity = 126/210 (60.00%), Postives = 149/210 (70.95%), Query Frame = 0


Query: 1   MAASMA-TMAVLSVKCTTINPTKNHNI-PKPIPKPISLLSLHNLPRGLISSKANENSNLS 60
           MAA+MA TMAVL+ KC T+N  K  +  PKP  KPISL      P GL +SK      LS
Sbjct: 1   MAATMATTMAVLNTKCLTLNTNKTTSTSPKPTSKPISL-----SPLGLSNSKL--PMGLS 60

Query: 61  TFLSGTALAGAVFSTLSSSDPAFAAQQIAEIAAD---GDNRGLALLLPLIPAIAWVLFNI 120
             ++  A+AGAVF+TL S DPAFA QQ+A+IAA+    DNRGLALLLP+IPA+ WVLFNI
Sbjct: 61  PIITAPAIAGAVFATLGSVDPAFAVQQLADIAAEAGTSDNRGLALLLPIIPALGWVLFNI 120

Query: 121 LQPALNQINKMRSD-KGVIIGLGLGGLTASGFMNA-PDASAS--EIAMVAADASSDGRGQ 180
           LQPALNQINKMR++ K  I+GLGL GL  SG + A P+A A+  EIA       SD RG 
Sbjct: 121 LQPALNQINKMRNEKKAFIVGLGLSGLATSGLLLATPEAQAASEEIA-----RGSDNRGT 180

Query: 181 LLLFVVAPAILWVLYNILQPALNQINRMRS 202
           LLL VV PAI WVL+NILQPALNQ+N+MRS
Sbjct: 181 LLLLVVLPAIGWVLFNILQPALNQLNKMRS 198

[Close]

BLAST of Sed0013558 vs. ExPASy Swiss-Prot
Match: O49347 (Photosystem II core complex proteins psbY, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSBY PE=2 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 1.4e-46
Identity = 115/205 (56.10%), Postives = 142/205 (69.27%), Query Frame = 0


Query: 1   MAASMATMAVLSVKCTTINPTKNHNIPKPIPKPISLLSLHNLPRGLISSKANENSNLSTF 60
           MAA+MAT    + KC ++NP+         PK    L      +  IS       N+S  
Sbjct: 1   MAAAMAT----ATKCMSLNPSP--------PK----LQNQTKSKPFISLPTPPKPNVSLA 60

Query: 61  LSGTALAGAVFSTLSSSDPAFAAQQIAEIA---ADGDNRGLALLLPLIPAIAWVLFNILQ 120
           ++ TALAGAVFS+LS S+PA A QQIA++A   A  DNRGLALLLP++PAIAWVL+NILQ
Sbjct: 61  VTSTALAGAVFSSLSYSEPALAIQQIAQLAAANASSDNRGLALLLPIVPAIAWVLYNILQ 120

Query: 121 PALNQINKMRSDKGVIIGLGL-GGLTASGFMNAPDASASEIAMVAADASSDGRGQLLLFV 180
           PA+NQ+NKMR  KG+++GLG+ GGL ASG +  P  + +  A  AA ASSD RGQLLL V
Sbjct: 121 PAINQVNKMRESKGIVVGLGIGGGLAASGLLTPPPEAYA--AAEAAAASSDSRGQLLLIV 180

Query: 181 VAPAILWVLYNILQPALNQINRMRS 202
           V PA+LWVLYNILQPALNQIN+MRS
Sbjct: 181 VTPALLWVLYNILQPALNQINKMRS 187

[Close]

BLAST of Sed0013558 vs. ExPASy TrEMBL
Match: A0A0A0LKA1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G350230 PE=3 SV=1)

HSP 1 Score: 333.2 bits (853), Expect = 7.7e-88
Identity = 177/202 (87.62%), Postives = 190/202 (94.06%), Query Frame = 0


Query: 1   MAASMATMAVLSVKCTTINPTKNHNIPKPIPKPISLLSLHNLPRGLISSKANENSNLSTF 60
           MAA+MATMAVLSVKCT+IN TK HN  K IPKPISLLSL NLP+GLISSK+N+NSNLSTF
Sbjct: 52  MAATMATMAVLSVKCTSINSTKTHNTQKIIPKPISLLSLQNLPKGLISSKSNQNSNLSTF 111

Query: 61  LSGTALAGAVFSTLSSSDPAFAAQQIAEIAADGDNRGLALLLPLIPAIAWVLFNILQPAL 120
           LS TA+AGAVF+TL SSDPAFAAQQIAEIAADGDNRGLALLLPLIPA+AWVLFNILQPAL
Sbjct: 112 LSSTAIAGAVFATLGSSDPAFAAQQIAEIAADGDNRGLALLLPLIPAVAWVLFNILQPAL 171

Query: 121 NQINKMRSDKGVIIGLGLGGLTASGFMNAPDASASEIAMVAADASSDGRGQLLLFVVAPA 180
           NQIN+MRSDKGVIIGLGLGGLTASGFM APDASASEIAM+A  +SSD RGQLLLFVVAPA
Sbjct: 172 NQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPA 231

Query: 181 ILWVLYNILQPALNQINRMRSD 203
           ILWVLYNILQPALNQ+NRMRS+
Sbjct: 232 ILWVLYNILQPALNQLNRMRSE 253

[Close]

BLAST of Sed0013558 vs. ExPASy TrEMBL
Match: A0A5A7UYJ2 (Photosystem II core complex proteins psbY OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G001790 PE=3 SV=1)

HSP 1 Score: 332.8 bits (852), Expect = 1.0e-87
Identity = 178/201 (88.56%), Postives = 189/201 (94.03%), Query Frame = 0


Query: 1   MAASMATMAVLSVKCTTINPTKNHNIPKPIPKPISLLSLHNLPRGLISSKANENSNLSTF 60
           MAA+MATMAVLSVKCT+IN TK HN  K IPKPISLLSL NLP+GLISSK+NENSNLSTF
Sbjct: 52  MAATMATMAVLSVKCTSINSTKTHNTQKIIPKPISLLSLQNLPKGLISSKSNENSNLSTF 111

Query: 61  LSGTALAGAVFSTLSSSDPAFAAQQIAEIAADGDNRGLALLLPLIPAIAWVLFNILQPAL 120
           LS TA+AGAVF+TL +SDPAFAAQQIAEIAADGDNRGLALLLPLIPAIAWVLFNILQPAL
Sbjct: 112 LSSTAIAGAVFATLGTSDPAFAAQQIAEIAADGDNRGLALLLPLIPAIAWVLFNILQPAL 171

Query: 121 NQINKMRSDKGVIIGLGLGGLTASGFMNAPDASASEIAMVAADASSDGRGQLLLFVVAPA 180
           NQIN+MRSDKGVIIGLGLGGLTASGFM APDASASEIAM+A  +SSD RGQLLLFVVAPA
Sbjct: 172 NQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPA 231

Query: 181 ILWVLYNILQPALNQINRMRS 202
           ILWVLYNILQPALNQ+NRMRS
Sbjct: 232 ILWVLYNILQPALNQLNRMRS 252

[Close]

BLAST of Sed0013558 vs. ExPASy TrEMBL
Match: A0A1S3B9R1 (photosystem II core complex proteins psbY, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103487736 PE=3 SV=1)

HSP 1 Score: 332.8 bits (852), Expect = 1.0e-87
Identity = 178/201 (88.56%), Postives = 189/201 (94.03%), Query Frame = 0


Query: 1   MAASMATMAVLSVKCTTINPTKNHNIPKPIPKPISLLSLHNLPRGLISSKANENSNLSTF 60
           MAA+MATMAVLSVKCT+IN TK HN  K IPKPISLLSL NLP+GLISSK+NENSNLSTF
Sbjct: 52  MAATMATMAVLSVKCTSINSTKTHNTQKIIPKPISLLSLQNLPKGLISSKSNENSNLSTF 111

Query: 61  LSGTALAGAVFSTLSSSDPAFAAQQIAEIAADGDNRGLALLLPLIPAIAWVLFNILQPAL 120
           LS TA+AGAVF+TL +SDPAFAAQQIAEIAADGDNRGLALLLPLIPAIAWVLFNILQPAL
Sbjct: 112 LSSTAIAGAVFATLGTSDPAFAAQQIAEIAADGDNRGLALLLPLIPAIAWVLFNILQPAL 171

Query: 121 NQINKMRSDKGVIIGLGLGGLTASGFMNAPDASASEIAMVAADASSDGRGQLLLFVVAPA 180
           NQIN+MRSDKGVIIGLGLGGLTASGFM APDASASEIAM+A  +SSD RGQLLLFVVAPA
Sbjct: 172 NQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPA 231

Query: 181 ILWVLYNILQPALNQINRMRS 202
           ILWVLYNILQPALNQ+NRMRS
Sbjct: 232 ILWVLYNILQPALNQLNRMRS 252

[Close]

BLAST of Sed0013558 vs. ExPASy TrEMBL
Match: A0A6J1BQF3 (photosystem II core complex proteins psbY, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111004808 PE=3 SV=1)

HSP 1 Score: 318.2 bits (814), Expect = 2.5e-83
Identity = 169/202 (83.66%), Postives = 185/202 (91.58%), Query Frame = 0


Query: 1   MAASMATMAVLSVKCTTINPTKNHNIPKPIPKPISLLSLHNLPRGLISSKANENSNLSTF 60
           MAA+MATMAVLSVKCT+IN +KNH  PKPI  PISLLSL NLP+ LISSKA++N NLSTF
Sbjct: 1   MAATMATMAVLSVKCTSINSSKNHTTPKPITNPISLLSLQNLPKELISSKASQNPNLSTF 60

Query: 61  LSGTALAGAVFSTLSSSDPAFAAQQIAEIAADGDNRGLALLLPLIPAIAWVLFNILQPAL 120
           LS TA+AGAVFS  SSSDPAFAAQQIAEIAA+GDNRGLALLLPLIPAIAWVLFNILQPAL
Sbjct: 61  LSSTAIAGAVFSAFSSSDPAFAAQQIAEIAAEGDNRGLALLLPLIPAIAWVLFNILQPAL 120

Query: 121 NQINKMRSDKGVIIGLGLGGLTASGFMNAPDASASEIAMVAADASSDGRGQLLLFVVAPA 180
           NQIN+MRSDKGVIIGLGLGGL AS FM APDASA+EIAM+A  +SSD RGQLLLFV++PA
Sbjct: 121 NQINRMRSDKGVIIGLGLGGLAASEFMYAPDASAAEIAMIADASSSDARGQLLLFVISPA 180

Query: 181 ILWVLYNILQPALNQINRMRSD 203
           ILWVLYNILQPALNQ+NRMRS+
Sbjct: 181 ILWVLYNILQPALNQLNRMRSE 202

[Close]

BLAST of Sed0013558 vs. ExPASy TrEMBL
Match: F6GVJ9 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_01s0137g00210 PE=3 SV=1)

HSP 1 Score: 290.4 bits (742), Expect = 5.7e-75
Identity = 157/202 (77.72%), Postives = 176/202 (87.13%), Query Frame = 0


Query: 1   MAASMATMAVLSVKCTTINPTKNHNIPKPIPKPISLLSLHNLPRGLISSKANENSNLSTF 60
           MAA++ATMA+L+ KC +IN  KN N+ KP  KPISLLS+ NLP+GL + K++EN NLST 
Sbjct: 1   MAATIATMAMLNAKCLSINSPKNLNLSKPTAKPISLLSIQNLPKGLTTLKSSENQNLSTS 60

Query: 61  LSGTALAGAVFSTLSSSDPAFAAQQIAEIAADGDNRGLALLLPLIPAIAWVLFNILQPAL 120
           L+GTA+AGA+FSTLSS DPA AAQQIAEI ADGDNRGLALLLP+IPAIAWVLFNILQPAL
Sbjct: 61  LAGTAIAGAIFSTLSSCDPALAAQQIAEI-ADGDNRGLALLLPIIPAIAWVLFNILQPAL 120

Query: 121 NQINKMRSDKGVIIGLGLGGLTASGFMNAPDASASEIAMVAADASSDGRGQLLLFVVAPA 180
           NQ+NKMRS KGVIIGLGLGGL ASGFM  P ASASEIA +A  ASSD RGQLLLFVV PA
Sbjct: 121 NQLNKMRSTKGVIIGLGLGGLAASGFMLTPHASASEIATLADAASSDNRGQLLLFVVTPA 180

Query: 181 ILWVLYNILQPALNQINRMRSD 203
           ILWVLYNILQPALNQ+NRMRS+
Sbjct: 181 ILWVLYNILQPALNQLNRMRSE 201

[Close]

BLAST of Sed0013558 vs. TAIR 10
Match: AT1G67740.1 (photosystem II BY )

HSP 1 Score: 187.6 bits (475), Expect = 1.0e-47
Identity = 115/205 (56.10%), Postives = 142/205 (69.27%), Query Frame = 0


Query: 1   MAASMATMAVLSVKCTTINPTKNHNIPKPIPKPISLLSLHNLPRGLISSKANENSNLSTF 60
           MAA+MAT    + KC ++NP+         PK    L      +  IS       N+S  
Sbjct: 1   MAAAMAT----ATKCMSLNPSP--------PK----LQNQTKSKPFISLPTPPKPNVSLA 60

Query: 61  LSGTALAGAVFSTLSSSDPAFAAQQIAEIA---ADGDNRGLALLLPLIPAIAWVLFNILQ 120
           ++ TALAGAVFS+LS S+PA A QQIA++A   A  DNRGLALLLP++PAIAWVL+NILQ
Sbjct: 61  VTSTALAGAVFSSLSYSEPALAIQQIAQLAAANASSDNRGLALLLPIVPAIAWVLYNILQ 120

Query: 121 PALNQINKMRSDKGVIIGLGL-GGLTASGFMNAPDASASEIAMVAADASSDGRGQLLLFV 180
           PA+NQ+NKMR  KG+++GLG+ GGL ASG +  P  + +  A  AA ASSD RGQLLL V
Sbjct: 121 PAINQVNKMRESKGIVVGLGIGGGLAASGLLTPPPEAYA--AAEAAAASSDSRGQLLLIV 180

Query: 181 VAPAILWVLYNILQPALNQINRMRS 202
           V PA+LWVLYNILQPALNQIN+MRS
Sbjct: 181 VTPALLWVLYNILQPALNQINKMRS 187

The following BLAST results are available for this feature:

BLAST of Sed0013558 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038886078.1	9.0e-91	90.10	LOW QUALITY PROTEIN: photosystem II core complex proteins psbY, chloroplastic-li...	[more]
XP_004142959.3	1.6e-87	87.62	photosystem II core complex proteins psbY, chloroplastic [Cucumis sativus]	[more]
KGN62604.2	1.6e-87	87.62	hypothetical protein Csa_018753 [Cucumis sativus]	[more]
XP_008444395.1	2.1e-87	88.56	PREDICTED: photosystem II core complex proteins psbY, chloroplastic [Cucumis mel...	[more]
KAG6598253.1	4.6e-87	86.63	Photosystem II core complex proteins psbY, chloroplastic, partial [Cucurbita arg...	[more]

BLAST of Sed0013558 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P80470	5.7e-48	60.00	Photosystem II core complex proteins psbY, chloroplastic OS=Spinacia oleracea OX...	[more]
O49347	1.4e-46	56.10	Photosystem II core complex proteins psbY, chloroplastic OS=Arabidopsis thaliana...	[more]

BLAST of Sed0013558 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LKA1	7.7e-88	87.62	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G350230 PE=3 SV=1	[more]
A0A5A7UYJ2	1.0e-87	88.56	Photosystem II core complex proteins psbY OS=Cucumis melo var. makuwa OX=1194695...	[more]
A0A1S3B9R1	1.0e-87	88.56	photosystem II core complex proteins psbY, chloroplastic OS=Cucumis melo OX=3656...	[more]
A0A6J1BQF3	2.5e-83	83.66	photosystem II core complex proteins psbY, chloroplastic OS=Momordica charantia ...	[more]
F6GVJ9	5.7e-75	77.72	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_01s0137g00210 PE=3 SV=...	[more]

BLAST of Sed0013558 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G67740.1	1.0e-47	56.10	photosystem II BY	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009388	Photosystem II PsbY	PFAM	PF06298	PsbY	coord: 94..126 e-value: 7.3E-15 score: 54.5 coord: 167..199 e-value: 6.5E-10 score: 38.7
IPR009388	Photosystem II PsbY	HAMAP	MF_00717	PSII_PsbY	coord: 94..128 score: 10.897942
IPR038760	Photosystem II PsbY, plant	PANTHER	PTHR34790	PHOTOSYSTEM II CORE COMPLEX PROTEINS PSBY, CHLOROPLASTIC	coord: 1..202
None	No IPR available	PANTHER	PTHR34790:SF2	SUBFAMILY NOT NAMED	coord: 1..202

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0013558.1	Sed0013558.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0034219	carbohydrate transmembrane transport
biological_process	GO:0045454	cell redox homeostasis
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009534	chloroplast thylakoid
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009523	photosystem II
molecular_function	GO:0030145	manganese ion binding
molecular_function	GO:0051119	sugar transmembrane transporter activity