Sed0013553 (gene) Chayote v1

Overview
NameSed0013553
Typegene
OrganismSechium edule (Chayote v1)
DescriptionUnknown protein
LocationLG01: 33851220 .. 33851468 (-)
RNA-Seq ExpressionSed0013553
SyntenySed0013553
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATCAAGATGGGAGAGATGGAGAGGAGATTAGTGAAGCTAGGTGGAGAGAAGCTCAAAGTGGGGTCATTAATCGTTTAACTCAAGTTGTTAATTCCTTAAGCGATAGGTTGGAGCGAATGGAAGTAGCTTTAGGAAATCCTCAAGGGAGGAAGGATAACTTTAATTATGAAGGAGTTGAAAATGAAGATGGAGAAGATAATGTTAACCTCTTAGCGGGATACAATCCACGGGAGGGAGAGTTTTAG

mRNA sequence

ATGAATCAAGATGGGAGAGATGGAGAGGAGATTAGTGAAGCTAGGTGGAGAGAAGCTCAAAGTGGGGTCATTAATCGTTTAACTCAAGTTGTTAATTCCTTAAGCGATAGGTTGGAGCGAATGGAAGTAGCTTTAGGAAATCCTCAAGGGAGGAAGGATAACTTTAATTATGAAGGAGTTGAAAATGAAGATGGAGAAGATAATGTTAACCTCTTAGCGGGATACAATCCACGGGAGGGAGAGTTTTAG

Coding sequence (CDS)

ATGAATCAAGATGGGAGAGATGGAGAGGAGATTAGTGAAGCTAGGTGGAGAGAAGCTCAAAGTGGGGTCATTAATCGTTTAACTCAAGTTGTTAATTCCTTAAGCGATAGGTTGGAGCGAATGGAAGTAGCTTTAGGAAATCCTCAAGGGAGGAAGGATAACTTTAATTATGAAGGAGTTGAAAATGAAGATGGAGAAGATAATGTTAACCTCTTAGCGGGATACAATCCACGGGAGGGAGAGTTTTAG

Protein sequence

MNQDGRDGEEISEARWREAQSGVINRLTQVVNSLSDRLERMEVALGNPQGRKDNFNYEGVENEDGEDNVNLLAGYNPREGEF
Homology
BLAST of Sed0013553 vs. NCBI nr
Match: XP_023534142.1 (uncharacterized protein LOC111795765 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 97.8 bits (242), Expect = 4.5e-17
Identity = 52/80 (65.00%), Postives = 66/80 (82.50%), Query Frame = 0

Query: 1  MNQDGRDGEEISEARWREAQSGVINRLTQVVNSLSDRLERMEVALGNPQGRKDNFNYEGV 60
          MNQDG +G EI+EARWREAQ G I RL QV+++L+DR+ER+E+ALGN QGR+   N EGV
Sbjct: 1  MNQDGGNGGEINEARWREAQVGTITRLNQVISTLTDRMERIEIALGNLQGREVLLN-EGV 60

Query: 61 ENEDGEDNVNLLAGYNPREG 81
          ENE+ +DNV LLAG++PR G
Sbjct: 61 ENEE-DDNVTLLAGHSPRGG 78

BLAST of Sed0013553 vs. NCBI nr
Match: XP_022929948.1 (uncharacterized protein LOC111436410 [Cucurbita moschata])

HSP 1 Score: 95.5 bits (236), Expect = 2.3e-16
Identity = 51/80 (63.75%), Postives = 65/80 (81.25%), Query Frame = 0

Query: 1  MNQDGRDGEEISEARWREAQSGVINRLTQVVNSLSDRLERMEVALGNPQGRKDNFNYEGV 60
          MNQDG +G EI+EARWREAQ G I  L QV+++L+DR+ER+E+ALGN QGR+   N EGV
Sbjct: 1  MNQDGGNGREINEARWREAQVGTITCLNQVISTLTDRMERIEIALGNLQGREVLLN-EGV 60

Query: 61 ENEDGEDNVNLLAGYNPREG 81
          ENE+ +DNV LLAG++PR G
Sbjct: 61 ENEE-DDNVTLLAGHSPRGG 78

BLAST of Sed0013553 vs. NCBI nr
Match: XP_022925325.1 (uncharacterized protein LOC111432615 [Cucurbita moschata])

HSP 1 Score: 93.6 bits (231), Expect = 8.6e-16
Identity = 50/80 (62.50%), Postives = 65/80 (81.25%), Query Frame = 0

Query: 1  MNQDGRDGEEISEARWREAQSGVINRLTQVVNSLSDRLERMEVALGNPQGRKDNFNYEGV 60
          MNQD  +G EI+EARWREAQ G I RL QV+++L+DR+ER+++ALGN QGR+   N EGV
Sbjct: 1  MNQDEGNGGEINEARWREAQVGTITRLNQVISTLTDRMERIQIALGNLQGREVLLN-EGV 60

Query: 61 ENEDGEDNVNLLAGYNPREG 81
          ENE+ +DNV LLAG++PR G
Sbjct: 61 ENEE-DDNVTLLAGHSPRGG 78

BLAST of Sed0013553 vs. NCBI nr
Match: KGN53741.1 (hypothetical protein Csa_015371 [Cucumis sativus])

HSP 1 Score: 74.3 bits (181), Expect = 5.4e-10
Identity = 48/80 (60.00%), Postives = 53/80 (66.25%), Query Frame = 0

Query: 1  MNQDGRDGEEISEARWREAQSGVINRLTQVVNSLSDRLERMEVALGN-PQGRKDNFNYEG 60
          MNQ  ++  EISEAR  EAQ G I RLTQV+N L+DRL+RM VAL N  QG   N   EG
Sbjct: 1  MNQKAKNDGEISEARRIEAQGGAIVRLTQVINDLTDRLDRMNVALRNRHQGEVLN---EG 60

Query: 61 VENEDGEDNVNLLAGYNPRE 80
          VENE  EDN  LLA  NP E
Sbjct: 61 VENEKDEDNETLLARQNPTE 77

BLAST of Sed0013553 vs. NCBI nr
Match: XP_038888883.1 (uncharacterized protein LOC120078660 [Benincasa hispida])

HSP 1 Score: 73.9 bits (180), Expect = 7.0e-10
Identity = 45/78 (57.69%), Postives = 53/78 (67.95%), Query Frame = 0

Query: 1  MNQDGRDGEEISEARWREAQSGVINRLTQVVNSLSDRLERMEVALGNPQGRKDNFNYEGV 60
          M+Q   D  E SEAR+REAQ GVI RLT+VV SL DR+ERMEVAL NPQ  +   N E  
Sbjct: 1  MSQGEGDRVETSEARYREAQVGVITRLTKVVKSLIDRVERMEVALRNPQQGEMGCN-EEF 60

Query: 61 ENEDGEDNVNLLAGYNPR 79
          +NE+ +DN  LL G N R
Sbjct: 61 DNEEDDDNETLLVGQNSR 77

BLAST of Sed0013553 vs. ExPASy TrEMBL
Match: A0A6J1ETN1 (uncharacterized protein LOC111436410 OS=Cucurbita moschata OX=3662 GN=LOC111436410 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 1.1e-16
Identity = 51/80 (63.75%), Postives = 65/80 (81.25%), Query Frame = 0

Query: 1  MNQDGRDGEEISEARWREAQSGVINRLTQVVNSLSDRLERMEVALGNPQGRKDNFNYEGV 60
          MNQDG +G EI+EARWREAQ G I  L QV+++L+DR+ER+E+ALGN QGR+   N EGV
Sbjct: 1  MNQDGGNGREINEARWREAQVGTITCLNQVISTLTDRMERIEIALGNLQGREVLLN-EGV 60

Query: 61 ENEDGEDNVNLLAGYNPREG 81
          ENE+ +DNV LLAG++PR G
Sbjct: 61 ENEE-DDNVTLLAGHSPRGG 78

BLAST of Sed0013553 vs. ExPASy TrEMBL
Match: A0A6J1EHL9 (uncharacterized protein LOC111432615 OS=Cucurbita moschata OX=3662 GN=LOC111432615 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 4.1e-16
Identity = 50/80 (62.50%), Postives = 65/80 (81.25%), Query Frame = 0

Query: 1  MNQDGRDGEEISEARWREAQSGVINRLTQVVNSLSDRLERMEVALGNPQGRKDNFNYEGV 60
          MNQD  +G EI+EARWREAQ G I RL QV+++L+DR+ER+++ALGN QGR+   N EGV
Sbjct: 1  MNQDEGNGGEINEARWREAQVGTITRLNQVISTLTDRMERIQIALGNLQGREVLLN-EGV 60

Query: 61 ENEDGEDNVNLLAGYNPREG 81
          ENE+ +DNV LLAG++PR G
Sbjct: 61 ENEE-DDNVTLLAGHSPRGG 78

BLAST of Sed0013553 vs. ExPASy TrEMBL
Match: A0A0A0L0S3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G114220 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 2.6e-10
Identity = 48/80 (60.00%), Postives = 53/80 (66.25%), Query Frame = 0

Query: 1  MNQDGRDGEEISEARWREAQSGVINRLTQVVNSLSDRLERMEVALGN-PQGRKDNFNYEG 60
          MNQ  ++  EISEAR  EAQ G I RLTQV+N L+DRL+RM VAL N  QG   N   EG
Sbjct: 1  MNQKAKNDGEISEARRIEAQGGAIVRLTQVINDLTDRLDRMNVALRNRHQGEVLN---EG 60

Query: 61 VENEDGEDNVNLLAGYNPRE 80
          VENE  EDN  LLA  NP E
Sbjct: 61 VENEKDEDNETLLARQNPTE 77

BLAST of Sed0013553 vs. ExPASy TrEMBL
Match: A0A0A0KC00 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G235580 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 5.8e-10
Identity = 45/79 (56.96%), Postives = 55/79 (69.62%), Query Frame = 0

Query: 1  MNQDGRDGEEISEARWREAQSGVINRLTQVVNSLSDRLERMEVALGN-PQGRKDNFNYEG 60
          MN+  ++  +ISEA+  EAQ G I RLTQV+N L++RL+RMEVAL N  QG   N   EG
Sbjct: 1  MNKKAKNDGKISEAKRIEAQGGAIVRLTQVINDLTNRLDRMEVALRNHHQGEVLN---EG 60

Query: 61 VENEDGEDNVNLLAGYNPR 79
          VENE+ EDN   LAG NPR
Sbjct: 61 VENEEDEDNETFLAGQNPR 76

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_023534142.14.5e-1765.00uncharacterized protein LOC111795765 [Cucurbita pepo subsp. pepo][more]
XP_022929948.12.3e-1663.75uncharacterized protein LOC111436410 [Cucurbita moschata][more]
XP_022925325.18.6e-1662.50uncharacterized protein LOC111432615 [Cucurbita moschata][more]
KGN53741.15.4e-1060.00hypothetical protein Csa_015371 [Cucumis sativus][more]
XP_038888883.17.0e-1057.69uncharacterized protein LOC120078660 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1ETN11.1e-1663.75uncharacterized protein LOC111436410 OS=Cucurbita moschata OX=3662 GN=LOC1114364... [more]
A0A6J1EHL94.1e-1662.50uncharacterized protein LOC111432615 OS=Cucurbita moschata OX=3662 GN=LOC1114326... [more]
A0A0A0L0S32.6e-1060.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G114220 PE=4 SV=1[more]
A0A0A0KC005.8e-1056.96Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G235580 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 24..44
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 59..82

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0013553.1Sed0013553.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding